Citrus Sinensis ID: 005808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670------
Protein Sequence
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE
Secondary Structure (PSIPRED)
cccccHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHcccccHHHHHccHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHHHccccccHHHHccccHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHccccHHHHcccHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHccccccccEEEcccccccccHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHccHHHccccHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHccc
Coil and Loop (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGcafsalgrkEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKqdrsvtceydvsnsmssltvsesglnandkmsetsenhnksdicdsssqsrdvsetcsksshdpdlcngrsdeakggssvpvsksglhingklrevsenhngssdgsksthasrdaseinrqssddfdicngpidkasvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQilkedpmypealigRGTARAFQRELEAAISDFTEAiqsnpsagEAWKRRGQARAALGESVEAIQDLSKalefepnsadilhergivnfkfkdFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDlssglgidpsnieCLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE
Flexible Loop (DISEMBL)
mlkrklldsryrlnkthkticeidelvrvDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETsenhnksdicdsssqsrDVSEtcsksshdpdlcngrsdeakggssvpvsksgLHINGKLrevsenhngssdgsksthasrdaseinrqssddfdicNGPIDKAsvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklsfkWDMLKetsneakrnkkfcvtrisksksisvdfrlsrgiaqvnegkyASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE
Low Complexity Region (SEG)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAkggssvpvsksgLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKlssdsaslndsntnsesyskssisdnkssdstesrsklsFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYhlrglllhglgqhKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE
Disordered region (IsUnstruct)
*********RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ**SVTCE************************************************************************************************************************************************************************************************************KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF*************************************LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYG**
Disordered Region (DISOPRED)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGL*
Disordered Region (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNAN*************************************LCNGRS**********VSKSGLHINGKLREVS***********************RQSSDDFDICNGPIDKASVNER**************************************************KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS******************GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE
Disordered Region (DISPRO)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	676	2.2.26 [Sep-21-2011]
Q8NBP0	860	Tetratricopeptide repeat	yes	no	0.366	0.288	0.303	2e-28
Q9M8Y0	977	Probable UDP-N-acetylgluc	no	no	0.303	0.209	0.255	2e-12
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.381	0.277	0.242	3e-12
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.381	0.276	0.239	8e-11
Q68FQ7	659	RNA polymerase II-associa	no	no	0.349	0.358	0.269	7e-10
Q86TZ1	520	Tetratricopeptide repeat	no	no	0.362	0.471	0.252	1e-09
Q96301	914	Probable UDP-N-acetylgluc	no	no	0.381	0.282	0.239	2e-09
Q5ZKQ3	665	RNA polymerase II-associa	no	no	0.349	0.354	0.252	2e-09
Q54VG4	334	Small glutamine-rich tetr	no	no	0.171	0.347	0.316	3e-09
Q9H6T3	665	RNA polymerase II-associa	no	no	0.347	0.353	0.26	6e-09

>sp|Q8NBP0|TTC13_HUMAN Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 135/254 (53%), Gaps = 6/254 (2%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQSNP 446
           +  G Y  AI  F  +L+E+P    A+ GRG A   +     +  E A+ + +  I   P
Sbjct: 154 IGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEP 213

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+  A ED 
Sbjct: 214 DRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDF 272

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++L+K    A  Y GL     G  K+A E+  +A++   +F++A+  L Q Y++L N
Sbjct: 273 QQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGN 332

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            E A E  Q+ L +++   +   LRG++L+  G  ++A+K+    L ++P N  C Y++ 
Sbjct: 333 FEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKG 392

Query: 627 SCYHAIGEYREAIK 640
             + A+G++ E IK
Sbjct: 393 LSHVAMGQFYEGIK 406

Homo sapiens (taxid: 9606)

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 91/219 (41%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +L  A+  + EA++  P+  +A+   G    ALG   EAI     AL+  PNSA      
Sbjct: 238 DLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNI 297

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             + ++    + A+      +  D     AY  LG AL  IG   +A   + + + L  N
Sbjct: 298 ASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQPN 357

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             +A  +L   Y +      A    +  L +    S  ++   ++    G +  AI   +
Sbjct: 358 HPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYN 417

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L IDP   + L  R + Y  IG   EAI+DY  A++ 
Sbjct: 418 EVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINF 456

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 123/280 (43%), Gaps = 22/280 (7%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F+EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   +++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+          Y +A C
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA--------YYKKALC 294

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLF 668
           Y+    Y +A+ +    L +    M KF +  + FY++ F
Sbjct: 295 YN--WHYADAMYN----LGVAYGEMLKFDM-AIVFYELAF 327

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 121/280 (43%), Gaps = 22/280 (7%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+          Y + + 
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA---------YYKKAL 293

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLF 668
           Y+    Y +A+ +    L +    M KF +  + FY++ F
Sbjct: 294 YYN-WHYADAMYN----LGVAYGEMLKFDM-AIVFYELAF 327

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 13/249 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +GKY  AI  + + +  DP  P     R +A    ++   A SD   AI  + 
Sbjct: 139 KGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSR 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVED 505
           S  +A+ RRG AR AL +  +A +D  K LE EP++ +  +E R I        N+  +D
Sbjct: 199 SYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENSHPKD 258

Query: 506 LSACVK-LDKENKS-----------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++A +K  + E K+           A   LG      G+Y++A E + + I  D      
Sbjct: 259 IAAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALL 318

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
             +    Y  +   E+A     Q + +D  +SKA+  RG     LG+  +A +D  + L 
Sbjct: 319 PANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLL 378

Query: 614 IDPSNIECL 622
           ++P N + +
Sbjct: 379 LEPGNKQAV 387

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q86TZ1|TTC6_HUMAN Tetratricopeptide repeat protein 6 OS=Homo sapiens GN=TTC6 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 1/246 (0%)

Query: 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
           F + L  +P Y +A I  G     Q + + A + FT AI ++P    A++ R      +G
Sbjct: 270 FLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMG 329

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
            +  A+QD++ A++    +A+ L  RG+++        A++D    + L+ +   AY   
Sbjct: 330 NNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNA 388

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           G       ++ +A +   KA++ D        +       L   E+A E    V+     
Sbjct: 389 GNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPF 448

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
           ++  Y  R    + L Q++ A +DL+  L + P++      RA     IG   EA+ DY+
Sbjct: 449 WAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYN 508

Query: 644 AALDLE 649
            ALDLE
Sbjct: 509 QALDLE 514

Homo sapiens (taxid: 9606)

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 123/280 (43%), Gaps = 22/280 (7%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+A A+++++ +L++D    EA IG+G     Q +   A   F+EAI+ +P    A    
Sbjct: 58  KFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHC 117

Query: 456 GQARAALGESVEAIQDLSKAL----EFEPNS---ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL     ++P +   A +L + G       +    ++    
Sbjct: 118 GILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYE 177

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 178 ALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLE 237

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+          Y + + 
Sbjct: 238 MAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVA---------YYKKAL 288

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLF 668
           Y+    Y +A+ +    L +    M KF +  + FY++ F
Sbjct: 289 YYN-WHYADAMYN----LGVAYGEMLKFDMA-IVFYELAF 322

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G +  AI  + + +  DP  P     R +A    ++   A SD   A+  + 
Sbjct: 139 KGNKYFKQGNFDEAIKCYTRGMHSDPFNPVLPTNRASAFYRMKKFSVAESDCNLALALDK 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-------KDF 499
           +  +A+ RRG AR AL     A +D  K LE + N+ +  +E   +           K+F
Sbjct: 199 NYTKAYARRGAARFALKNFQGAKEDYEKVLELDANNYEAKNELKKIEQALSSESSEQKEF 258

Query: 500 NAAV-----EDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
             AV     E+   C++ ++  + A T   LG      G+Y+ A E + + I  D     
Sbjct: 259 EEAVRSELTENERRCIEEEQLKQKAVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNAL 318

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
              +    Y  +   E+A     Q L +D  +SKA+  RG     LG+ K+A++D  + L
Sbjct: 319 LPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVL 378

Query: 613 GIDPSNIECL 622
            ++P N + +
Sbjct: 379 KLEPGNKQAI 388

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425
           +KF  ++  + K+I+   + + G A++NEGK+  A+S +++ +  D         R    
Sbjct: 131 QKFMESKAGEVKAIAEKLK-NEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATY 189

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482
           +  +  E +I D  EAI+ NP+ G+A+ R G A  +LG+  EA++  +KA+E EPN+
Sbjct: 190 SALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNN 246

May act as a co-chaperone and regulate the ATPase activity of heat shock proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 15/250 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +GKY  AI  + + +  DP  P     R +A    ++   A SD   A+  N 
Sbjct: 139 KGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNR 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVED 505
           S  +A+ RRG AR AL +  EA +D  + LE EPN+ +  +E R I        N+  ++
Sbjct: 199 SYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKE 258

Query: 506 LSACVK------------LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLE 552
               +K             +K+   +    G      G+Y++A E + + I  D  N L 
Sbjct: 259 ADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALL 318

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
                  + +     E   +C Q +L +D  +SKA+  RG     LG+  +A +D  + L
Sbjct: 319 PANRAMAYLKIQKYEEAEKDCTQAIL-LDGSYSKAFARRGTARTFLGKLNEAKQDFETVL 377

Query: 613 GIDPSNIECL 622
            ++P N + +
Sbjct: 378 LLEPGNKQAV 387

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	676
255567975	1101	tetratricopeptide repeat protein, tpr, p	0.930	0.571	0.679	0.0
225438920	1068	PREDICTED: tetratricopeptide repeat prot	0.884	0.559	0.667	0.0
449448472	1046	PREDICTED: tetratricopeptide repeat prot	0.843	0.544	0.602	0.0
449520722	1046	PREDICTED: tetratricopeptide repeat prot	0.843	0.544	0.600	0.0
356565517	1042	PREDICTED: tetratricopeptide repeat prot	0.835	0.542	0.604	0.0
356496945	1047	PREDICTED: tetratricopeptide repeat prot	0.831	0.536	0.589	0.0
297798124	1043	hypothetical protein ARALYDRAFT_912592 [	0.831	0.538	0.563	0.0
224071273	526	predicted protein [Populus trichocarpa]	0.776	0.998	0.676	0.0
186517170	1052	suppressor of RPS4-RLD 1 / tetratricopep	0.840	0.539	0.558	0.0
4468812	1013	putative protein [Arabidopsis thaliana]	0.840	0.560	0.558	0.0

>gi|255567975|ref|XP_002524965.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis] gi|223535800|gb|EEF37462.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/634 (67%), Positives = 503/634 (79%), Gaps = 5/634 (0%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLC+ R+WSKAIR+LDSLL+QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCASRDWSKAIRVLDSLLSQSCTIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQLDP LLQAYILKG AFS+LGRK++AL VW++GYEHAL QSADLKQ LELEELL  
Sbjct: 61  DKALQLDPMLLQAYILKGRAFSSLGRKDDALLVWQQGYEHALRQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQ+R++     V+ S + +  +E   + N K +E S+N ++ SDI +S  +S D SE C
Sbjct: 121 AKQERNIGLRDHVTES-TPMNTTEFATHTNGKSNEASKNRDQLSDISNSCRESGDGSEIC 179

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SK   + D  N   D+A G S + + +   H+NGK  +V  NH+   D SK  + SRD  
Sbjct: 180 SKFGGNFDAMNVIRDKAGGESPITIPECRPHMNGKSDDVCTNHDKLGDKSKLHNESRDTY 239

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           +I   S D+  I N    KA  + +  +  NGTH+  DK+S DS S N  +  S   SKS
Sbjct: 240 KICCNSGDNCAIQNYLSRKAEGDVKTDK--NGTHNFIDKIS-DSESCNVLSDTSVPSSKS 296

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S     S D+++ R KLS K D+  E  +E K++KKF VTRISK+KSI+VDFRLSRGIAQ
Sbjct: 297 STISISSGDTSDIRVKLSNKTDIPNEAGDETKKSKKFSVTRISKTKSITVDFRLSRGIAQ 356

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYASAISIFDQIL EDP YPEALIGRGTA AFQRELEAAI+DF++AIQSNP AGEA
Sbjct: 357 VNEGKYASAISIFDQILTEDPTYPEALIGRGTAHAFQRELEAAIADFSKAIQSNPLAGEA 416

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES+EAI DL+KALEFEPNSADILHERGIVNFKFKDF+AAV+DLSACVK
Sbjct: 417 WKRRGQARAALGESIEAIHDLTKALEFEPNSADILHERGIVNFKFKDFDAAVQDLSACVK 476

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           LDK+NKSAYTYLGLALSS GEYKKAEEAHLK+IQLDR+FLE W HLTQFYQDLAN  KA 
Sbjct: 477 LDKDNKSAYTYLGLALSSTGEYKKAEEAHLKSIQLDRSFLEGWAHLTQFYQDLANLTKAF 536

Query: 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
           EC++QVL ID RF+KAYHL GLLLHG+G+H+KAIK+LS GL I+ SNIECLYLRASCYHA
Sbjct: 537 ECIKQVLQIDARFAKAYHLHGLLLHGMGEHRKAIKELSLGLSIENSNIECLYLRASCYHA 596

Query: 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           IGEY EA+KDYDA LD+ELDSMEKFVLQCLAFYQ
Sbjct: 597 IGEYGEAVKDYDATLDMELDSMEKFVLQCLAFYQ 630

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438920|ref|XP_002279290.1| PREDICTED: tetratricopeptide repeat protein 13-like [Vitis vinifera]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/635 (66%), Positives = 495/635 (77%), Gaps = 37/635 (5%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           M SAI+ R ELAKLCS R+WSKAIR+LDSLLAQS  IQDICNRAFCYS+LELHKHVIRDC
Sbjct: 1   MESAISERQELAKLCSCRDWSKAIRVLDSLLAQSCVIQDICNRAFCYSKLELHKHVIRDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQL+PTLLQAYILKG A SALG+KE+AL VWE+GY HA+ QSADLKQFLELEELL  
Sbjct: 61  DKALQLEPTLLQAYILKGHALSALGKKEDALLVWEQGYGHAVRQSADLKQFLELEELL-- 118

Query: 153 AKQDRSVTCE-YDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETC 211
            KQ+R +TCE + + +  SS++VSES L+ N+K + T +N +K +         D SE C
Sbjct: 119 -KQNRRITCENHAMESPESSISVSESALHVNEKPNSTHKNDSKLN---------DESELC 168

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           S+SS   +                       I+ K     +N +  +D S+    S D S
Sbjct: 169 SESSDTSE-----------------------IHCKPNSTHKNDSKLNDESELCSESSDTS 205

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           EI+ ++ D  D  +   D  + NE+   ++NGT+D+  K S +S   ++ N  SE  SKS
Sbjct: 206 EIHCKAFDTSDGHDELRDTVNGNEKLNSESNGTYDIFVKSSDESELCSELNDTSEQSSKS 265

Query: 332 SIS-DNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390
           S+   +KSSD +E R K S K+D+  E  +EA RNKKFCVTRISK+KSISVDFRLSRGIA
Sbjct: 266 SVVIHSKSSDISEVRRKSSNKYDIRSELGDEANRNKKFCVTRISKTKSISVDFRLSRGIA 325

Query: 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           QVNEG Y++AISIFDQILKEDP YPEAL+GRGTA AFQREL +AI+DFT+AI+SNPSA E
Sbjct: 326 QVNEGNYSNAISIFDQILKEDPTYPEALVGRGTAYAFQRELSSAIADFTKAIESNPSACE 385

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510
           AWKRRGQARAALGES EAI+DL+KALEFEPNS DILHERGIVNFKFKDFNAAVEDLSACV
Sbjct: 386 AWKRRGQARAALGESSEAIEDLTKALEFEPNSTDILHERGIVNFKFKDFNAAVEDLSACV 445

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
           +LDKENKSAYTYLGLALSSIGEYK+AEEAH+K+IQLD+NFLE W HLTQFYQDLAN  KA
Sbjct: 446 QLDKENKSAYTYLGLALSSIGEYKRAEEAHMKSIQLDQNFLEGWAHLTQFYQDLANPTKA 505

Query: 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630
           LEC+++VL ID+ F+KAYHLRGLL HG+G+HKKAI DLS GLGI+ SNIECLYLRASCYH
Sbjct: 506 LECIERVLQIDEGFAKAYHLRGLLRHGMGEHKKAITDLSIGLGIENSNIECLYLRASCYH 565

Query: 631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           AIGEY EAIKDYD AL LELDSMEKFVLQCLAFYQ
Sbjct: 566 AIGEYGEAIKDYDKALTLELDSMEKFVLQCLAFYQ 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448472|ref|XP_004141990.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/636 (60%), Positives = 460/636 (72%), Gaps = 66/636 (10%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESGFSTVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           HAIGEY  A+KDYDA LDL+LDSMEKFVLQCLAFYQ
Sbjct: 538 HAIGEYGLAVKDYDATLDLDLDSMEKFVLQCLAFYQ 573

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520722|ref|XP_004167382.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/636 (60%), Positives = 459/636 (72%), Gaps = 66/636 (10%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESRFSAVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           HAIGEY  A+KDYD  LDL+LDSMEKFVLQCLAFYQ
Sbjct: 538 HAIGEYGLAVKDYDVTLDLDLDSMEKFVLQCLAFYQ 573

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565517|ref|XP_003550986.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/637 (60%), Positives = 459/637 (72%), Gaps = 72/637 (11%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA A + R+ELA+LC+ ++WSKAIRILDSL++ S  IQD+CNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPATSERVELARLCASKDWSKAIRILDSLVSHSNAIQDLCNRAFCYSKLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDPTLLQAYILKG A S LGRKE AL VWE+GYEHALHQSADLKQ LELEEL+  
Sbjct: 61  DRALQLDPTLLQAYILKGSALSVLGRKENALLVWEQGYEHALHQSADLKQLLELEELIAT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN----KSDICDSSSQSRDVS 208
           AKQ  +  CE   S +  SL  ++S   +N   SET +  +    ++++C  ++   D S
Sbjct: 121 AKQGNNTLCE---SETHRSLPQTKSVSLSNGSSSETCKIQDTLGTRAELCGDATG--DKS 175

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASR 268
           ETC KS+ + +L +   DE                    RE S   +G  +GS       
Sbjct: 176 ETCLKSADNSNLKHESHDE-------------------YRE-SNKSDGQVNGSPDV---L 212

Query: 269 DASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY 328
           D    N +S +D    +   DK S N                 S DSA++     N    
Sbjct: 213 DTLSYNSESCNDSSDASESSDKVSTN-----------------SGDSANVPKIFRN--PI 253

Query: 329 SKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRG 388
           SK   SD +  +                     A++NKKFCV RIS + SISVDFRLSRG
Sbjct: 254 SKFIFSDERKGE---------------------ARKNKKFCVARISNTNSISVDFRLSRG 292

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           IA+VNEGKYA AISIFDQILK+DP YPEALIGRGTA AFQREL+AAI+DFT+AIQ NP A
Sbjct: 293 IAEVNEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLA 352

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
           GEAWKRRGQARAALGE VEAI+DL+KALEFEP++ADILHERGIVNFKFK+F+AAVEDLSA
Sbjct: 353 GEAWKRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSA 412

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
           CVKLDK+N SAYTYLGLALSSIGEYK+AEEAHLK++QLD+NFLEAW HLTQFYQDLA   
Sbjct: 413 CVKLDKDNTSAYTYLGLALSSIGEYKEAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPT 472

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
           KA EC+ ++L+ID RF++AYHLRGLL H +G+H+KAIKDL+ GL ID SNIECLYLRASC
Sbjct: 473 KAQECINRMLHIDGRFARAYHLRGLLFHAMGEHRKAIKDLTMGLSIDGSNIECLYLRASC 532

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           YHA+G+Y+EA+KDYDAALDLELDSM+KFVLQCL FYQ
Sbjct: 533 YHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLVFYQ 569

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496945|ref|XP_003517325.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/643 (58%), Positives = 454/643 (70%), Gaps = 81/643 (12%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA   + R  LA+LCS ++WSKAIR+LDSL++QS  IQDICNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPTTSQRATLARLCSSKDWSKAIRVLDSLVSQSGAIQDICNRAFCYSRLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           +KALQLDP+ LQAYILKG A SALGRK +AL VWE+GYEHA HQSADLK  LELEELLT 
Sbjct: 61  NKALQLDPSRLQAYILKGHALSALGRKTDALLVWEQGYEHAQHQSADLKLLLELEELLTT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK----SDICDSSSQSRDVS 208
            KQ  S   E     + S ++ SES   ++  ++E  EN ++     ++CD++S   D S
Sbjct: 121 TKQGNSALYE----TNGSPVSQSESDSPSDGNLTEICENQDRLSVQDELCDNAS---DKS 173

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHING------KLREVSENHNGSSDGSK 262
               KS+ + DL N  + E +       +KS   +NG      KL   SE+ N SSD S+
Sbjct: 174 LILLKSADNFDLRNELNIEDRES-----NKSDSQVNGSPDVIDKLSYNSESCNDSSDTSE 228

Query: 263 STHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSN 322
           S    +  +     SSD  D+                      ++  KLS          
Sbjct: 229 SCDKDKVFTNSGESSSDSLDVA---------------------EILRKLS---------- 257

Query: 323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD 382
                                  SK +F      E   EA++N KFCV RISK+KSISVD
Sbjct: 258 -----------------------SKFNFP----HEKIGEARKN-KFCVARISKTKSISVD 289

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
           FRLSRGI +VNEGKYA AISIFDQILKEDP YPEALIGRGTA AF+REL+AAI+DF++AI
Sbjct: 290 FRLSRGIGEVNEGKYAHAISIFDQILKEDPAYPEALIGRGTAYAFKRELDAAIADFSKAI 349

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + NPSAGEAWKRRGQARAALGE VEAI+DL+ ALEFE NSADILHERGIVNFKFK+F+AA
Sbjct: 350 EFNPSAGEAWKRRGQARAALGEFVEAIEDLTMALEFESNSADILHERGIVNFKFKEFDAA 409

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           VEDLSACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++Q+DRNFLEAW HLTQFYQ
Sbjct: 410 VEDLSACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQIDRNFLEAWAHLTQFYQ 469

Query: 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622
           DL+   KA ECL Q+L ID RF++AYHLRGLL H +G+H+KAI DL+  L +D +N+ECL
Sbjct: 470 DLSKPTKAQECLNQMLQIDGRFARAYHLRGLLFHAMGEHRKAISDLTMSLNVDGANVECL 529

Query: 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           YLR SCYHA+G Y+EA+KDYDAALDLELDSM+KFVLQCLAFYQ
Sbjct: 530 YLRGSCYHAVGRYKEAVKDYDAALDLELDSMDKFVLQCLAFYQ 572

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798124|ref|XP_002866946.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata] gi|297312782|gb|EFH43205.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/642 (56%), Positives = 446/642 (69%), Gaps = 80/642 (12%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA+A + R+ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DC
Sbjct: 1   MATATSERVELAKHCSSRNWSKAIRVLDSLLAKQSSILDICNRAFCYNQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY++AL Q+AD+KQ LELEELLT 
Sbjct: 61  DKALLLEPCAIQAFILKGRALLALGRKQEAVLVLEQGYKNALQQTADVKQLLELEELLTD 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
           A++      E D + S      S S    +D+ ++  +NH               S  CS
Sbjct: 121 ARR------EIDATESRQETPASHS--EKSDEKTDKLDNHE--------------SGACS 158

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
                    NG S                H +   RE+ E        SK    S+D S+
Sbjct: 159 ---------NGNS----------------HDHEASRELGEK-------SKIISFSKDTSK 186

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNT 323
            ++QS    D+CNG   K   N + G Q NG++         D+HD L+  S  L D + 
Sbjct: 187 ASKQSDGSSDLCNGSAYKEKENGKCGSQINGSYESCKPCNGSDLHDNLAESSDRLGDLSI 246

Query: 324 NSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383
           N    +K  I  +K S   E+R              +E ++NKK+ + RIS + SISVDF
Sbjct: 247 NG---NKLIIKSSKMSHKAEARC-------------DETRKNKKYTIARISGTHSISVDF 290

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           RLSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQ
Sbjct: 291 RLSRGIAQVNEGNYMKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQ 350

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SNP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV
Sbjct: 351 SNPAATEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAV 410

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           +DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+
Sbjct: 411 KDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQE 470

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
           LA+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLY
Sbjct: 471 LADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLY 529

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           LR SCYHAIGEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQ
Sbjct: 530 LRGSCYHAIGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQ 571

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071273|ref|XP_002303385.1| predicted protein [Populus trichocarpa] gi|222840817|gb|EEE78364.1| predicted protein [Populus trichocarpa]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/529 (67%), Positives = 412/529 (77%), Gaps = 4/529 (0%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLCS R+WSKAIR+LDSLL QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCSSRDWSKAIRVLDSLLVQSCAIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDPTLLQAYILKG AFS+LGRK++AL VWE+GYEHALHQSADLKQ LELEELL  
Sbjct: 61  DRALQLDPTLLQAYILKGRAFSSLGRKDDALLVWEQGYEHALHQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQDRS  CE  V  S  S+  SES    + K  ETS++ NK SDI +  S SR+V    
Sbjct: 121 AKQDRSAGCETHVVESRLSMYASES--QPHSKSDETSKHQNKLSDISNLCSGSRNVLGIH 178

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SKS  + ++  G SDE  G S   V +SG H N K  E S+N + +SD S+     RDA 
Sbjct: 179 SKSGDNFEIHKGISDEV-GRSLKLVPESGCHTNEKSSETSKNPSKASDKSELCSELRDAP 237

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           EI  +S D+FD+ NG  DKA  N++ G   N  HD+ D  +  S S +  +  SE  S+ 
Sbjct: 238 EICCKSGDNFDMDNGLSDKAEGNQKPGILVNDNHDILDLPNHVSESCSGVSNASELSSRL 297

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S+      D++E  SK S K +M  E ++E K NKK CVTRISK+KSISVDFRLSRGIAQ
Sbjct: 298 SMIPGNLGDTSEILSKSSNKVNMHNEVTDETKGNKKLCVTRISKTKSISVDFRLSRGIAQ 357

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYA+AISIFDQILKEDP YPEALIGRGTARAF+REL +AI+DF++AI+SNPSAGEA
Sbjct: 358 VNEGKYATAISIFDQILKEDPTYPEALIGRGTARAFKRELGSAIADFSKAIESNPSAGEA 417

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES EAI DL+KALEFEPNSADILHERGIV++KFKDF+AAVEDLSACVK
Sbjct: 418 WKRRGQARAALGESAEAINDLTKALEFEPNSADILHERGIVSYKFKDFDAAVEDLSACVK 477

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
           LD +N SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR+FLEAW HLTQF
Sbjct: 478 LDMDNMSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRSFLEAWAHLTQF 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186517170|ref|NP_195462.3| suppressor of RPS4-RLD 1 / tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|332661397|gb|AEE86797.1| suppressor of RPS4-RLD 1 / tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/641 (55%), Positives = 447/641 (69%), Gaps = 73/641 (11%)

Query: 34  ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93
           A+A + R ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DCD
Sbjct: 4   ATATSERFELAKHCSSRNWSKAIRVLDSLLAKESSILDICNRAFCYNQLELHKHVIKDCD 63

Query: 94  KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153
           KAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY+ AL Q+AD+KQ LELEELL  A
Sbjct: 64  KALLLEPFAIQAFILKGRALLALGRKQEAVLVLEQGYKSALQQTADVKQLLELEELLKDA 123

Query: 154 KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSK 213
           +++        +   + S        +A +   ET   H  S+  D  S   D  E+ + 
Sbjct: 124 RRE--------IDGILKS--------HATESPQETPAYH--SEKSDEKSDKLDNHESGAS 165

Query: 214 SSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273
           S       NG S E+                    E+ E        SK    S+ AS+ 
Sbjct: 166 S-------NGNSHESSS------------------ELGEQ-------SKIVSFSKVASKA 193

Query: 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNTN 324
           ++QS  + D+CNG + K   N + G Q NG +         D+HD L+  S    + + N
Sbjct: 194 SKQSDGNSDLCNGSVYKEKENGKCGSQINGYYESCKPCNGSDLHDNLAESSDRFGELSIN 253

Query: 325 SESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR 384
               +K SI  +K S   E+R  +S          +E+++NKK+ + RIS + SISVDFR
Sbjct: 254 G---NKISIKSSKMSHKAEARCGIS----------DESRKNKKYTIARISGTHSISVDFR 300

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           LSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQS
Sbjct: 301 LSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQS 360

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV+
Sbjct: 361 NPAASEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAVK 420

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+L
Sbjct: 421 DLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQEL 480

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
           A+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLYL
Sbjct: 481 ADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLYL 539

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           R SCYHA+GEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQ
Sbjct: 540 RGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQ 580

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4468812|emb|CAB38213.1| putative protein [Arabidopsis thaliana] gi|7270728|emb|CAB80411.1| putative protein [Arabidopsis thaliana]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/641 (55%), Positives = 447/641 (69%), Gaps = 73/641 (11%)

Query: 34  ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93
           A+A + R ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DCD
Sbjct: 4   ATATSERFELAKHCSSRNWSKAIRVLDSLLAKESSILDICNRAFCYNQLELHKHVIKDCD 63

Query: 94  KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153
           KAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY+ AL Q+AD+KQ LELEELL  A
Sbjct: 64  KALLLEPFAIQAFILKGRALLALGRKQEAVLVLEQGYKSALQQTADVKQLLELEELLKDA 123

Query: 154 KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSK 213
           +++        +   + S        +A +   ET   H  S+  D  S   D  E+ + 
Sbjct: 124 RRE--------IDGILKS--------HATESPQETPAYH--SEKSDEKSDKLDNHESGAS 165

Query: 214 SSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273
           S       NG S E+                    E+ E        SK    S+ AS+ 
Sbjct: 166 S-------NGNSHESSS------------------ELGEQ-------SKIVSFSKVASKA 193

Query: 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNTN 324
           ++QS  + D+CNG + K   N + G Q NG +         D+HD L+  S    + + N
Sbjct: 194 SKQSDGNSDLCNGSVYKEKENGKCGSQINGYYESCKPCNGSDLHDNLAESSDRFGELSIN 253

Query: 325 SESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR 384
               +K SI  +K S   E+R  +S          +E+++NKK+ + RIS + SISVDFR
Sbjct: 254 G---NKISIKSSKMSHKAEARCGIS----------DESRKNKKYTIARISGTHSISVDFR 300

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           LSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQS
Sbjct: 301 LSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQS 360

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV+
Sbjct: 361 NPAASEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAVK 420

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+L
Sbjct: 421 DLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQEL 480

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
           A+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLYL
Sbjct: 481 ADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLYL 539

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           R SCYHA+GEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQ
Sbjct: 540 RGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQ 580

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	676
TAIR|locus:2126347	1052	SRFR1 "SUPPRESSOR OF RPS4-RLD	0.452	0.290	0.710	2.6e-160
DICTYBASE|DDB_G0272186	1050	DDB_G0272186 "TPR_1 repeat-con	0.329	0.212	0.290	1.1e-28
ZFIN|ZDB-GENE-080722-25	826	ttc13 "tetratricopeptide repea	0.377	0.308	0.291	6.7e-24
UNIPROTKB|Q74DZ8	266	GSU1166 "TPR domain protein" [	0.329	0.838	0.271	1e-14
TIGR_CMR|GSU_1166	266	GSU_1166 "TPR domain protein"	0.329	0.838	0.271	1e-14
UNIPROTKB|F1NNH9	599	TOMM70A "Uncharacterized prote	0.399	0.450	0.224	2.3e-12
UNIPROTKB|O94826	608	TOMM70A "Mitochondrial import	0.411	0.457	0.22	3.1e-12
UNIPROTKB|P72802	266	mom72 "Mitochondrial outer mem	0.269	0.684	0.279	7.9e-12
RGD|1303049	610	Tomm70a "translocase of outer	0.411	0.455	0.223	1.8e-11
MGI|MGI:106295	611	Tomm70a "translocase of outer	0.411	0.454	0.223	1.8e-11

TAIR|locus:2126347 SRFR1 "SUPPRESSOR OF RPS4-RLD 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1139 (406.0 bits), Expect = 2.6e-160, Sum P(2) = 2.6e-160
 Identities = 218/307 (71%), Positives = 261/307 (85%)

Query:   359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL 418
             S+E+++NKK+ + RIS + SISVDFRLSRGIAQVNEG Y  AISIFD++LKE+P YPEAL
Sbjct:   275 SDESRKNKKYTIARISGTHSISVDFRLSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEAL 334

Query:   419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478
             IGRGTA AFQRELE+AI+DFT+AIQSNP+A EAWKRRGQARAALGE VEA++DL+KAL F
Sbjct:   335 IGRGTAYAFQRELESAIADFTKAIQSNPAASEAWKRRGQARAALGEYVEAVEDLTKALVF 394

Query:   479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             EPNS D+LHERGIVNFK KDF AAV+DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEE
Sbjct:   395 EPNSPDVLHERGIVNFKSKDFTAAVKDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEE 454

Query:   539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXX 598
             AHLK+IQLD N+LEAW HL QFYQ+LA+  KALEC++QVL +D R  KAY          
Sbjct:   455 AHLKSIQLDSNYLEAWLHLAQFYQELADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGL 514

Query:   599 XXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
                +KAI++LS GL I+ + IECLYLR SCYHA+GEYR+A+KDYDA +D+ELD++EKFVL
Sbjct:   515 GEHRKAIQELSIGLSIE-NTIECLYLRGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVL 573

Query:   659 QCLAFYQ 665
             QCLAFYQ
Sbjct:   574 QCLAFYQ 580

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0032947 "protein complex scaffold" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

DICTYBASE|DDB_G0272186 DDB_G0272186 "TPR_1 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 306 (112.8 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
 Identities = 65/224 (29%), Positives = 125/224 (55%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             +S+G   VN G+Y  AI +F  I+  +P+ P   +GRGT+ AF  +L  AI+DF+ AI+ 
Sbjct:   291 ISQGNTFVNAGQYEEAIELFTMIIDNNPLVPSLYLGRGTSNAFLGQLNEAINDFSRAIEL 350

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAV 503
             + ++ +A+KRRGQ++ A     EA++D ++A+ F+  +  DI + RG+++++ +++  A+
Sbjct:   351 DNTSSDAYKRRGQSKVAKSMEQEALEDFNQAVAFDKEDDYDIYYNRGLLHYQMRNYERAL 410

Query:   504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             +D      ++  +K A+  +GL L+  G   +A +A  +A+++D  F  +  ++ Q ++D
Sbjct:   411 KDFKKVTSIEPSHKLAWNRIGLCLNVNGYPMEAYQAFTEALRIDPYFEASHTNIGQCWKD 470

Query:   564 LANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKD 607
             L   + + +   + L I   +S A                AIKD
Sbjct:   471 LGKFDPSYQSFTKALEICPNYSNALHLRGLLFFNSGRHLDAIKD 514

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-080722-25 ttc13 "tetratricopeptide repeat domain 13" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 6.7e-24, P = 6.7e-24
 Identities = 76/261 (29%), Positives = 134/261 (51%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA---RAFQ--RELEAAISDFT 439
             L+ G   +  G Y  AI  F  +L+ DP    A+ GRG A   ++ Q  +  + A+ + +
Sbjct:   113 LAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKSLQDIKNADLALYELS 172

Query:   440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
               I   P+  E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+
Sbjct:   173 RVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDY 231

Query:   500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
              AA+ED    ++L K    A  Y GL     G  K+A E   +A++L  +F++A+  L Q
Sbjct:   232 MAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQ 291

Query:   560 FYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNI 619
              Y++L + E A+E  Q+ L +D+   ++              ++AI +    L ++P N 
Sbjct:   292 AYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNE 351

Query:   620 ECLYLRASCYHAIGEYREAIK 640
              C Y++   + A+G++ E IK
Sbjct:   352 VCQYMKGLSHVAMGQFYEGIK 372

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1166 GSU_1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NNH9 TOMM70A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
 Identities = 65/289 (22%), Positives = 116/289 (40%)

Query:   369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDP---MYPEALIGRGTA 424
             C   I        +  L R    +  G   +A    DQ++  ED    +   ALI RG+ 
Sbjct:   308 CTKEIEAKGKYMAEALLLRATFYLLIGNANAAKPDLDQVISMEDANVKLRANALIKRGSM 367

Query:   425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                Q++   +  DF  A   +P   + +  RGQ +  L +  EA++D  + +   P+SA 
Sbjct:   368 YMQQQQPALSTQDFNMAADIDPQNADVYHHRGQLKILLDQIEEAVEDFDECIRLRPDSAL 427

Query:   485 ILHERGIVNFK--FKDFN-----AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
                ++    ++  +   N      A++     +K   +    Y     AL+   ++ KA+
Sbjct:   428 AQAQKCFALYRQAYTGNNPLPVQVAMKGFEDVIKKFPKCAEGYALYAQALTDQQQFGKAD 487

Query:   538 EAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXX 593
             E + K I L+ +    + H      Q+ QDL   +K LE + + + ID +   AY     
Sbjct:   488 EMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDNKCDFAYETMGT 544

Query:   594 XXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                      KAI+  +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   545 IEVQRGNLDKAIEMFNKAINLAKSEMEMAHLYSLCDAAYAQ-TEVAKKY 592

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|O94826 TOMM70A "Mitochondrial import receptor subunit TOM70" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
 Identities = 66/300 (22%), Positives = 119/300 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   313 IISECSKEIDAEGKY----MAEALLLRATFYLLIGNANAAKPDLDKVISLKEANVK---L 365

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RG+    Q++   +  DF  A   +P   + +  RGQ +  L +  EA+ D  
Sbjct:   366 RANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEAVADFD 425

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             + +   P SA         L+ +           AA++     +K        Y     A
Sbjct:   426 ECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYALYAQA 485

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   ++ LE + + + ID 
Sbjct:   486 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DRGLELISKAIEIDN 542

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
             +   AY             +KAI   +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   543 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQ-TEVAKKY 601

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=TAS

GO:0008320 "protein transmembrane transporter activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P72802 mom72 "Mitochondrial outer membrane 72K protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 182 (69.1 bits), Expect = 7.9e-12, P = 7.9e-12
 Identities = 52/186 (27%), Positives = 96/186 (51%)

Query:   388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
             G+ ++    ++ AI+ F + +K +    +A   RG A+    + +AAI+D+ +AI  NP 
Sbjct:    49 GVDKLAAQNFSGAIADFTESIKLNDQDADAYYNRGYAKHVLGQYQAAITDYNQAISLNPE 108

Query:   448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
                A   R  A   L +  +AIQD S A+E  PN AD    RG    +  +   A+ D +
Sbjct:   109 FAYALGNRCYAYFLLSQYDKAIQDCSNAIEINPNYADFYVYRGNSQSQLGNETTAIADYN 168

Query:   508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH--LTQFYQDLA 565
               ++++ ++ +AY    L  + + + ++A   + ++IQLD +  EA+ +  LTQ+   L 
Sbjct:   169 DAIRINAQHANAYYNRALTHNRLKQDQQALADYNQSIQLDPDSAEAYFNRGLTQYR--LG 226

Query:   566 NSEKAL 571
             +  KA+
Sbjct:   227 DEPKAI 232

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

RGD|1303049 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 67/300 (22%), Positives = 117/300 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   315 IISECSKEIDAQGKY----MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---L 367

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RGT    Q++   +  DF  A + +P   + +  RGQ +  L    EA+ D  
Sbjct:   368 RANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFD 427

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
               +   P  A         L+ +           AA++     +K        Y     A
Sbjct:   428 ACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEVIKKFPRCAEGYALYAQA 487

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   488 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 544

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
             +   AY             +KAI   +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   545 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQ-TEVAKKY 603

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

MGI|MGI:106295 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (yeast)" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 67/300 (22%), Positives = 117/300 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   316 IISECSKEIDAQGKY----MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---L 368

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RGT    Q++   +  DF  A + +P   + +  RGQ +  L    EA+ D  
Sbjct:   369 RANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFD 428

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
               +   P  A         L+ +           AA++     +K        Y     A
Sbjct:   429 ACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEIIKKFPRCAEGYALYAQA 488

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   489 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 545

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
             +   AY             +KAI   +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   546 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQ-TEVAKKY 604

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	676
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-16
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-16
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-12
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-12
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-10
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	9e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-06
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	8e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	1e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-04
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	2e-04
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	2e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	4e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	6e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	7e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	8e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	8e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.002
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.004
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	0.004
PRK09782	987	PRK09782, PRK09782, bacteriophage N4 receptor, out	0.004

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 82.2 bits (201), Expect = 4e-17
 Identities = 84/289 (29%), Positives = 134/289 (46%), Gaps = 10/289 (3%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTAR-AFQRELEAAISDFTEAIQSNPSAGEA- 451
                 A++I  + L +      AL+  G A      EL  A+    EA++  P++  A 
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60

Query: 452 -WKRRGQARAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSA 508
                  A   LG   EA++ L KALE E  PN A+ L   G++      +  A+E L  
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 509 CVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLD---RNFLEAWGHLTQFYQDL 564
            + LD +   A   L L AL  +G+Y++A E + KA++LD       EA   L    + L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180

Query: 565 ANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
              E+ALE L++ L ++    ++A    GLL   LG++++A++     L +DP N E LY
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEY 672
             A     +G Y EA++  + AL+L+ D     +   L   + L  +E 
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 76.3 bits (188), Expect = 7e-17
 Identities = 37/100 (37%), Positives = 57/100 (57%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EA    G     LG+  EA++   KALE +P++AD  +      +K   +  A+ED    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LD +N  AY  LGLA   +G+Y++A EA+ KA++LD N
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 84.0 bits (208), Expect = 1e-16
 Identities = 62/273 (22%), Positives = 112/273 (41%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           S+  +L      + E ++  A ++ D++L  DP   +AL+ +G        +E A++ + 
Sbjct: 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +AI   P+               GE  EA +     L+  PNS    + + +V+F+ K++
Sbjct: 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A E L   +K   E   A    G +   +G  ++A +   + ++   N  +A   L  
Sbjct: 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
               L   ++A+  L   L +D     A  L G     LG  +KA + L+    +DP N 
Sbjct: 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA 397

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
                      + G+  EAI D + A  L+ + 
Sbjct: 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 32/99 (32%), Positives = 57/99 (57%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A   LG     +G+Y +A E + KA++LD +  +A+ +L   Y  L   E+ALE  ++ L
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +D   +KAY+  GL  + LG++++A++     L +DP+
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 83.2 bits (206), Expect = 2e-16
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 4/261 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+A +  G+   A   ++Q L  DP    A +G       +   + A +   E + ++P
Sbjct: 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +A   +G    +LG    A+    KA+   PN+  +L     +  +  +F  A +  
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
            A +K    +  A+    L       Y+ A E    A++    +L A      +++   L
Sbjct: 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ--L 308

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            N E+A + L Q+L       +A  L   +   LG+  +AI  LS  LG+DP +   L L
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

Query: 625 RASCYHAIGEYREAIKDYDAA 645
               Y A+G++ +A +    A
Sbjct: 369 LGEAYLALGDFEKAAEYLAKA 389

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 30/98 (30%), Positives = 56/98 (57%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           EA  +L   Y  L + ++ALE  ++ L +D   + AY+      + LG++++A++D    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L +DP N +  Y     Y+ +G+Y EA++ Y+ AL+L+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 76.7 bits (189), Expect = 2e-14
 Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 5/235 (2%)

Query: 415 PEALIGRGTARAFQRELE--AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           PE LI    A+++ ++ +  AAI     A+Q +P+  EA    G+   ALG+   A ++L
Sbjct: 22  PEELIEA--AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKEL 79

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIG 531
            KAL        +L            F   +++L     LD E  +      GLA   +G
Sbjct: 80  RKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
           + + A++++ +A+ +D   L A   L Q        ++A   + +VL  D     A  L+
Sbjct: 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
           G LL  LG  + A+      + + P+NI  L   A+     GE+ EA K  DA L
Sbjct: 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 31/99 (31%), Positives = 55/99 (55%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
           + L   G + +K  D++ A+E     ++LD +N  AY  L  A   +G+Y++A E + KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           ++LD +  +A+ +L   Y  L   E+ALE  ++ L +D 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 28/97 (28%), Positives = 48/97 (49%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+ G      G Y  A+  +++ L+ DP   +A      A     + E A+ D+ +A++ 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +P   +A+   G A   LG+  EA++   KALE +PN
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 74.0 bits (182), Expect = 1e-13
 Identities = 66/259 (25%), Positives = 101/259 (38%), Gaps = 20/259 (7%)

Query: 404 FDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           F Q+L E        D    E L  RG A     +LE A   + +A+  +P +  A    
Sbjct: 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL 165

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
            Q   A     EA   + + L  +P + D L  +G +     +   A+      + L   
Sbjct: 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANSEK 569
           N +    L   L   GE+++A E H  A+          ++L+A   L  F +   N E 
Sbjct: 226 NIAVLLALATILIEAGEFEEA-EKHADALLKKAPNSPLAHYLKA---LVDFQKK--NYED 279

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           A E LQ  L     +  A  L G   + LG  ++A + L+  L   P++ +   L AS  
Sbjct: 280 ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339

Query: 630 HAIGEYREAIKDYDAALDL 648
             +G   EAI     AL L
Sbjct: 340 LRLGRVDEAIATLSPALGL 358

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 72.0 bits (177), Expect = 5e-13
 Identities = 68/310 (21%), Positives = 113/310 (36%), Gaps = 42/310 (13%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G A +  G +  A     +  + DP    A    G ++  Q +   AI+D   A Q +P 
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429

Query: 448 AGEA-------WKRRGQARAAL---------------------------GESVEAIQDLS 473
            G A       + R GQ   AL                           G+  +A +   
Sbjct: 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KAL  EP+          ++ +  + + A++     + +D +N  A     LAL+ +   
Sbjct: 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI----LALAGLYLR 545

Query: 534 KKAEEAHL----KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
              EE  +    KA +L+   +E    L Q+Y      +KAL  L +         +A+ 
Sbjct: 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           + G      G   KA+      L + P +   L L A  Y  +  Y +AI     AL+L+
Sbjct: 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665

Query: 650 LDSMEKFVLQ 659
            D+ E  +  
Sbjct: 666 PDNTEAQIGL 675

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           EAL+  G       + + A+  + +A++ +P   +A+     A   LG+  EA++D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           LE +P++A   +  G+  +K   +  A+E     ++LD  
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 70.4 bits (172), Expect = 1e-12
 Identities = 94/420 (22%), Positives = 158/420 (37%), Gaps = 75/420 (17%)

Query: 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD--NKSSDSTESRSK 347
           K  ++++  R+        +  + +  S    N   E   +    D  + ++ S E R K
Sbjct: 66  KPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKK 125

Query: 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI 407
            + K   LKE  N+A RNK F       +K+I +               Y+ AI      
Sbjct: 126 YAAK---LKEKGNKAYRNKDF-------NKAIKL---------------YSKAI-----E 155

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467
            K DP+Y         A     + E  + D T A++ +P   +A  RR  A   LG+  +
Sbjct: 156 CKPDPVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212

Query: 468 AIQDLSKAL---EFEPNSADILHERGIVNF-------KFKDFNAAV-------------- 503
           A+ DL+ +     F    +    ER +  F         +     +              
Sbjct: 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR 272

Query: 504 -----EDLSACVKLDKENKSAYTYLGLAL--SSIGE-YKKAEEAHLKAIQLDRNFL---E 552
                  L    +LD+E  +    LGL    S   E Y++A  A  K   LD   L   E
Sbjct: 273 PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK--ALDLGKLGEKE 330

Query: 553 AWGH-LTQFYQDLANS-EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
           A    L   ++ L     +AL  L + + +D R +++Y  R  +   LG   KA +D   
Sbjct: 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV-LQCLAFYQVLFD 669
            L ++  + +  Y RA  +   GE+ +A KDY  ++DL+ D +   + L    + +    
Sbjct: 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 69.3 bits (170), Expect = 4e-12
 Identities = 56/298 (18%), Positives = 106/298 (35%), Gaps = 9/298 (3%)

Query: 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
           +S     S +  +    + + + KY +AI      L++DP   EA    G       +  
Sbjct: 14  LSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYA 73

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEF--EPNSADILHER 489
           AA  +  +A+       +       ARA L +   + + D         +  +A++L  R
Sbjct: 74  AAEKELRKALSLGYPKNQV--LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALR 131

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLD 547
           G+          A +       L  + +S Y  LGLA    +   + +A     + +  D
Sbjct: 132 GLAYLGLGQLELAQKSYEQA--LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
              ++A          L N E AL   ++ + +             +L   G+ ++A K 
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
             + L   P++    YL+A        Y +A +    AL    + +   +L   + YQ
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-YREAIKDYD 643
           ++A    G  L  LG + +AI+     L +DP N E  Y  A  Y  +G+ Y EA++D +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 644 AALDL 648
            AL+L
Sbjct: 63  KALEL 67

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 59.1 bits (141), Expect = 2e-09
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRG-TARAFQRELEAAISDFTEAIQ 443
           L+ G+     GKY  A+ + ++ L  DP    A       A     + E A+  + +A++
Sbjct: 99  LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158

Query: 444 SNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDF 499
            +P      EA    G    ALG   EA++ L KAL+  P+  A+ L   G++  K   +
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
             A+E     ++LD +N  A   L L L  +G Y++A EA  KA++LD +   
Sbjct: 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYN 271

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 62/308 (20%), Positives = 110/308 (35%), Gaps = 38/308 (12%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           VD  L +G   ++ G    A++ + + +   P     L+   T      E E A      
Sbjct: 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
            ++  P++  A   +           +A + L  AL+  P     L   G   ++  +  
Sbjct: 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312

Query: 501 AAVEDLSACVK----------------------------------LDKENKSAYTYLGLA 526
            A + L+  +K                                  LD ++ +A + LG A
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
             ++G+++KA E   KA +LD     A   L        +  +A+  L+    +D    +
Sbjct: 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432

Query: 587 AYHLRGLLLHGL--GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           A  L  L+L  L  GQ  KA+          P N     L  + Y   G+  +A + ++ 
Sbjct: 433 ADLL--LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490

Query: 645 ALDLELDS 652
           AL +E D 
Sbjct: 491 ALSIEPDF 498

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 64/291 (21%), Positives = 106/291 (36%), Gaps = 33/291 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           EG    AI  F+++L  DP    A++            E A++   +A + NP   E   
Sbjct: 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q     G+  +A+  L++A +  P+S +     G       D N AV      + L 
Sbjct: 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            ++  A   L  A + +  Y KA  +  +A++L  +  EA   L Q       +E A + 
Sbjct: 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691

Query: 574 LQQV----------------LYI-DKR-------FSKAYHLRG-----LLLH----GLGQ 600
            + +                LY+  K        + KA          + LH      G 
Sbjct: 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGN 751

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
             +A+K L + L   P++       A  Y A  +Y +AIK Y   +    D
Sbjct: 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           +A    G L + LG + +A++     L +DP N +  Y  A+ Y+ +G+Y EA++DY+ A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 646 LDLELDSMEKFVLQCLAFYQVLFDMEYY 673
           L+L                   + +  Y
Sbjct: 61  LEL----DPDNAKAYYNLGLAYYKLGKY 84

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 57.7 bits (139), Expect = 1e-08
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           Y  A   F++ L    +  +  I    RGT +  + +   A++D +++I+ +P   +++ 
Sbjct: 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           +R      LG+  +A +D  KAL+      DI + R  ++F   +F  A +D    + LD
Sbjct: 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
            +   ++  LG+     G    +     +     +NF EA
Sbjct: 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCK---KNFPEA 466

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEA 539
           ++A+ L   G   FK  D++ A+E     ++LD +N  AY  L LA   +G+ Y++A E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 540 HLKAIQLD 547
             KA++LD
Sbjct: 61  LEKALELD 68

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDFNAAVEDLSA 508
           EA K  G A   LG+  EAI+   KALE +P++A+  +   +   K  KD+  A+EDL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 509 CVKLDK 514
            ++LD 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 55.5 bits (134), Expect = 8e-08
 Identities = 58/262 (22%), Positives = 96/262 (36%), Gaps = 22/262 (8%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
            YA AI+   + L+  P   EA IG        +  E+A        + +P A   ++  
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G       +   AIQ   KAL+  P+S + +     +     +   AV+ L A +K    
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS-GNTAEAVKTLEAWLKTHPN 768

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           +    T L     +  +Y KA + +   ++   +      +L   Y +L +  +ALE  +
Sbjct: 769 DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAE 827

Query: 576 QVLYIDKRFSKAYHLR----------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
                     +A  L           G LL   G+  +A+  L   + I P      Y  
Sbjct: 828 ----------RALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877

Query: 626 ASCYHAIGEYREAIKDYDAALD 647
           A    A G   EA K+ D  L+
Sbjct: 878 ALALLATGRKAEARKELDKLLN 899

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLS 473
            EAL   G A     + + AI  + +A++ +P   EA+     A   LG+   EA++DL 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 474 KALEFEP 480
           KALE +P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 51.9 bits (124), Expect = 9e-07
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 13/211 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG  +  +GK+  A++   + ++ DP   ++ I R +      + + A  DF +A++ N 
Sbjct: 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +  R Q     GE  +A +D  K+++ +P+      + G+  +K     +++   
Sbjct: 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGH--- 556
             C K   E    Y Y G  L    ++ +A E    AI+L++       N L        
Sbjct: 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           L Q+ QD   +E   E   + L ID     A
Sbjct: 517 LFQWKQDFIEAENLCE---KALIIDPECDIA 544

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            N A  Y +L  ++  + D +KAL+LDP   +AY   G A+  LG+ EEAL  +EK  E 
Sbjct: 38  YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 369 CVT--RISKSKSISV--DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA 424
           CVT    S+    +     RL   +  + +G YA A    ++ L+ DP Y  A + R   
Sbjct: 19  CVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY 78

Query: 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNS 482
                E + A   + +A+   P+ G+     G    A G   EA+Q   +AL        
Sbjct: 79  YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
           +D L   G+   K   F+ A E L   ++LD +       L LA         A 
Sbjct: 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAP 191

Length = 250

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 35/148 (23%), Positives = 56/148 (37%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A    G   S++++  +     P   E L  +G  +        A+S   +A +  P+  
Sbjct: 75  ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A   LG   EA +   +ALE  PN   I +  G+      D   A   L   
Sbjct: 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAE 537
                 +      L L +   G++++AE
Sbjct: 195 YLSPAADSRVRQNLALVVGLQGDFREAE 222

Length = 257

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTE 440
           +   + G A    G Y  AI  +++ L+ DP   EA      A     +  E A+ D  +
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 441 AIQSNP 446
           A++ +P
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-------- 549
           D   A E+L   ++ D ++  AY  L L    +GE +KAE++  +A+ L+ N        
Sbjct: 46  DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105

Query: 550 --FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             FL   G   Q  Q     E+A+E     LY   + +++    GL     G   KA K 
Sbjct: 106 GTFLCQQGKYEQAMQQF---EQAIE---DPLY--PQPARSLENAGLCALKAGDFDKAEKY 157

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           L+  L IDP   E L   A  Y+  G+Y++A    +        + E   L 
Sbjct: 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG 209

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           + D   +   A    GKY  A+  +++ L+ DP   +A    G A     + E A+  + 
Sbjct: 33  NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92

Query: 440 EAIQSNPS 447
           +A++ +P+
Sbjct: 93  KALELDPN 100

Length = 100

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL--- 486
           E+EA I+     +Q NP   E W   G+A  ALG + +A+     AL    ++ +IL   
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL 196

Query: 487 ------HERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
                      +  K +     A       + LD  N  A + L  A    G+Y +A
Sbjct: 197 AEALYYQAGQQMTAKARALLRQA-------LALDPANIRALSLLAFAAFEQGDYAEA 246

Length = 287

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480
              A     + + A++    A+   P A EA    G+A    G   EA   L  AL  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 481 NSA 483
           +  
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+   A +  G Y  A++  +  L   P+  EAL+  G A   Q  L  A +    A+ +
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 445 NPSA 448
           +P  
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
           A+   ++A++ +PN+A++  +R   N K  +F  AV D +  ++LD     AY   G A 
Sbjct: 21  AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

Query: 528 SSIGEYKKAEEA 539
             + EY+ A+ A
Sbjct: 81  MKLEEYQTAKAA 92

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALEC 573
           +N  A   LG AL  +G+Y +A EA+ KA++LD +  EA+ +L   Y  L  + E+ALE 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 574 LQQVLYIDK 582
           L++ L +D 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +T+AI  +P+  E +  R QA   LG   EA+ D +KA+E +P+ A     +G 
Sbjct: 19  ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78

Query: 492 VNFKFKDFNAA 502
              K +++  A
Sbjct: 79  ACMKLEEYQTA 89

Length = 356

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+   +++L +      AY L        GQ+K+A + L   L +D S+  C YL A 
Sbjct: 6   ENAIFLAEKLLALTPSNEDAYLL-AQCYFLQGQYKRAYELLRK-LKLDNSS-GCRYLLAQ 62

Query: 628 CYHAIGEYREAIKDYDAA 645
           C   +G+Y EAI   + A
Sbjct: 63  CLLKLGKYDEAIAVLEKA 80

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 394 EGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--- 447
            G YA AI  F   LK   +    P A    G A   Q +   A   F   ++  P    
Sbjct: 13  AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPK 72

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A +A  + G +   LG+  +A   L + ++  P S+
Sbjct: 73  APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 108

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSS 610
           EA  +L      L + ++A+E  ++ L +D   ++AY+   L    LG  +++A++DL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 611 GLGIDP 616
            L +DP
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 18/58 (31%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                   G + +A+  L + L   P   E L L        G   EA     AAL  
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Length = 65

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +A     ++ A ++   AA +     ++ NP      K         G++  ++  L K
Sbjct: 34  AKATGAPESSLAMRQTQGAAAALGAAVLR-NPEDLSIAKLATALYLR-GDADSSLAVLQK 91

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +    P   ++L  +G    +  +F  AV  L    +L   +  A+  LG AL  +G + 
Sbjct: 92  SAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151

Query: 535 KAEEAHLKAIQLDRN 549
           +A  A+ +A++L  N
Sbjct: 152 EARRAYRQALELAPN 166

Length = 257

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++L+ N 
Sbjct: 3   ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +A    G A   LG+  EA++   KALE  PN
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKA 570
           +A   L L L  +G+Y +A E   KA++L R           A  +L + Y  L + ++A
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 571 LECLQQVL 578
           LE L++ L
Sbjct: 66  LEYLEKAL 73

Length = 78

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           RG    +LG    A  D S+AL   P+  ++ +  GI   +  +F+AA E   + ++LD 
Sbjct: 71  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALE 572
               A+   G+AL   G YK A++  L   Q D N  F   W +L +  Q L + ++A  
Sbjct: 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE--QKL-DPKQAKT 187

Query: 573 CLQQ 576
            L+Q
Sbjct: 188 NLKQ 191

Length = 297

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 532 EYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQDLA-------NSEKALECLQQVLYIDK 582
           E++KA +    L  +      +E    + QFY +LA       + ++A E L++ L  DK
Sbjct: 156 EWEKAIDVAERLVKLGGQTYRVE----IAQFYCELAQQALASSDVDRARELLKKALQADK 211

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAI 639
           +  +A  + G +    G ++KA++ L   L  +P  + E L +   CY  +G+  E +
Sbjct: 212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269

Length = 389

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 27/130 (20%), Positives = 46/130 (35%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
                  A  GR        + + A+      I + P      +  G       ++ EAI
Sbjct: 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI 360

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           + L KAL  +PNS  +         K      A+  L+  +  D E+ + +  L  A + 
Sbjct: 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420

Query: 530 IGEYKKAEEA 539
           +G   +A  A
Sbjct: 421 LGNRAEALLA 430

Length = 484

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.3 bits (100), Expect = 8e-04
 Identities = 22/100 (22%), Positives = 46/100 (46%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A  NE ++  A+ ++ ++L+ DP  P+ L+G     A   +   A+    E +   P+  
Sbjct: 95  AYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDA 154

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
             ++       A  + ++A+Q   +AL  EP++ +   E 
Sbjct: 155 ARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALEL 194

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            + LY   + Y  +G+Y EA++ Y+ AL+L 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELN 31

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAI 639
           A +   L+L  LG + +A++ L   L +        P     L   A  Y A+G+Y EA+
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 640 KDYDAALDL 648
           +  + AL L
Sbjct: 67  EYLEKALAL 75

Length = 78

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            E LY   + Y  +G+Y EA++ Y+ AL+L+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A +  G  A A+   +  LK  P               Q++ + AI  +   ++  P   
Sbjct: 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804

Query: 450 E-----AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                 AW               A++   +AL+  PN   IL   G +  +  + + A+ 
Sbjct: 805 VVLNNLAWLYLELKDP------RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
            L   V +  E  +   +L LAL + G   +A
Sbjct: 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 46/220 (20%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDF 438
              R+   +  + +G    A    D+ L+ DP    A +    A  +Q+  ELE A   F
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL--ALYYQQLGELEKAEDSF 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
             A+  NP+ G+     G      G+  +A+Q                            
Sbjct: 89  RRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ---------------------------Q 121

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
           F  A+ED      L  +   +    GL     G++ KAE+   +A+Q+D    E+   L 
Sbjct: 122 FEQAIEDP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176

Query: 559 QFYQDLANSEKALECLQQV----------LYIDKRFSKAY 588
           + Y      + A   L++           L++  R ++A 
Sbjct: 177 ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 35/165 (21%), Positives = 59/165 (35%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            RA    L    +    A +S      A   R       G+  EA++ L   +  +P++ 
Sbjct: 281 IRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP 340

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
             L   G +  +      A+E L   + LD  +      L  AL   G+ ++A     + 
Sbjct: 341 YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRY 400

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
           +  D      W  L Q Y +L N  +AL    +   +  R  +A 
Sbjct: 401 LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445

Length = 484

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++LD N 
Sbjct: 3   ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           + + N    Y +L  +   +   +KAL+LDP    AY     A+  LG+ EEAL  +EK 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 130 YEHA 133
            E  
Sbjct: 61  LELD 64

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
           +A A+ ++ Q +  DP   E    R  A         A++D  +AI+ +PS  +A+ R+G
Sbjct: 18  FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

Query: 457 QARAALGESVEAIQDLSKALEFEPNS---ADILHE 488
            A   L E   A   L K     P       ++ E
Sbjct: 78  TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112

Length = 356

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 545 QLDRNFLEA-WGHLTQFYQ--DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            LD   LE  +      YQ      + K  + L      + R+             L ++
Sbjct: 11  GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL---AACCQMLKEY 67

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           ++AI   +    +DP +    +  A C  A+GE   A+K  D A+++
Sbjct: 68  EEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane subunit; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
            R    + E A++D T ++   PSA     R    R        A+ DL  ALE EPN
Sbjct: 585 QRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQR-HNVPAAVSDLRAALELEPN 641

Length = 987

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	676
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.96
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.94
KOG1126	638	consensus DNA-binding cell division cycle control	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK14574	822	hmsH outer membrane protein; Provisional	99.93
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.91
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.91
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.9
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.9
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.9
KOG2076	895	consensus RNA polymerase III transcription factor	99.9
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.9
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.89
KOG2003	840	consensus TPR repeat-containing protein [General f	99.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.88
PRK12370	553	invasion protein regulator; Provisional	99.88
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.88
KOG2076	895	consensus RNA polymerase III transcription factor	99.88
KOG1129	478	consensus TPR repeat-containing protein [General f	99.87
PRK12370	553	invasion protein regulator; Provisional	99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.85
KOG1129	478	consensus TPR repeat-containing protein [General f	99.85
KOG1125	579	consensus TPR repeat-containing protein [General f	99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.85
PRK11189	296	lipoprotein NlpI; Provisional	99.84
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.83
PRK11189	296	lipoprotein NlpI; Provisional	99.83
KOG1125	579	consensus TPR repeat-containing protein [General f	99.83
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.82
KOG0553	304	consensus TPR repeat-containing protein [General f	99.81
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.81
PLN03218	1060	maturation of RBCL 1; Provisional	99.81
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.8
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.8
PLN03218	1060	maturation of RBCL 1; Provisional	99.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.79
PLN03077	857	Protein ECB2; Provisional	99.79
PLN02789	320	farnesyltranstransferase	99.79
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.78
PLN02789	320	farnesyltranstransferase	99.78
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.75
PLN03077	857	Protein ECB2; Provisional	99.75
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.74
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.69
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.66
KOG4234	271	consensus TPR repeat-containing protein [General f	99.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.63
PRK15359	144	type III secretion system chaperone protein SscB;	99.59
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.58
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.57
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.57
PRK15359	144	type III secretion system chaperone protein SscB;	99.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.56
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.54
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.53
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.52
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.5
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.49
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.49
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.49
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.48
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.47
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.45
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.44
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.44
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.43
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.4
PRK04841	903	transcriptional regulator MalT; Provisional	99.4
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.39
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.38
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.38
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.37
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.36
KOG0553	304	consensus TPR repeat-containing protein [General f	99.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.32
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.31
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.3
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.29
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.28
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.21
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.21
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.2
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.2
PRK04841	903	transcriptional regulator MalT; Provisional	99.2
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.17
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.14
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.13
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.07
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.06
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.05
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.04
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.02
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.02
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.01
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.99
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.99
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.99
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.98
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.98
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.98
PRK11906	458	transcriptional regulator; Provisional	98.98
KOG4555	175	consensus TPR repeat-containing protein [Function	98.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.97
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.96
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.96
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.94
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.93
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.93
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.93
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.91
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.89
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.89
PRK11906	458	transcriptional regulator; Provisional	98.89
PRK15331	165	chaperone protein SicA; Provisional	98.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.87
PRK15331	165	chaperone protein SicA; Provisional	98.86
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.84
PRK10803	263	tol-pal system protein YbgF; Provisional	98.84
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.82
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.82
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.81
PRK10803	263	tol-pal system protein YbgF; Provisional	98.79
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.76
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.73
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.73
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.72
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.7
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.68
PF13512	142	TPR_18: Tetratricopeptide repeat	98.67
PF13371	73	TPR_9: Tetratricopeptide repeat	98.67
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.65
PF12688	120	TPR_5: Tetratrico peptide repeat	98.64
PF13512	142	TPR_18: Tetratricopeptide repeat	98.64
KOG2471	696	consensus TPR repeat-containing protein [General f	98.64
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.62
PF12688	120	TPR_5: Tetratrico peptide repeat	98.62
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.62
PF13371	73	TPR_9: Tetratricopeptide repeat	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.59
KOG4234	271	consensus TPR repeat-containing protein [General f	98.53
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.51
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.5
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.46
KOG2471	696	consensus TPR repeat-containing protein [General f	98.39
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.38
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.31
KOG4555	175	consensus TPR repeat-containing protein [Function	98.29
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.29
KOG1586	288	consensus Protein required for fusion of vesicles	98.29
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.26
KOG1586	288	consensus Protein required for fusion of vesicles	98.24
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.2
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.19
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.18
PF13431	34	TPR_17: Tetratricopeptide repeat	98.16
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.14
KOG1585	308	consensus Protein required for fusion of vesicles	98.13
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.13
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.05
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.03
KOG1585	308	consensus Protein required for fusion of vesicles	98.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.0
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.99
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.98
PF13428	44	TPR_14: Tetratricopeptide repeat	97.97
KOG1310	758	consensus WD40 repeat protein [General function pr	97.95
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.93
PF13428	44	TPR_14: Tetratricopeptide repeat	97.91
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.81
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.8
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.79
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.79
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.77
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.73
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.71
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.7
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.66
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.65
KOG1258	577	consensus mRNA processing protein [RNA processing	97.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.6
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.58
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.57
PF13431	34	TPR_17: Tetratricopeptide repeat	97.56
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.49
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.48
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.44
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.39
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.38
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.37
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.34
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.34
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.29
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.29
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.29
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.24
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.24
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.17
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.16
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.16
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.13
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.11
KOG1258	577	consensus mRNA processing protein [RNA processing	97.1
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.08
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.08
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.05
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.05
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.94
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.93
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.91
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.91
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.87
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.86
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.84
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.75
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.61
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.55
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.5
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.49
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.48
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.46
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.36
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.35
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.32
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.2
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.18
PRK10941	269	hypothetical protein; Provisional	96.16
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.13
PRK10941	269	hypothetical protein; Provisional	96.12
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.04
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.03
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.99
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.96
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.94
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.87
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.84
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.82
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.72
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.7
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.6
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.59
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.55
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.45
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.36
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.36
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.32
KOG3364	149	consensus Membrane protein involved in organellar	95.31
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.28
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.27
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.24
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.15
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.03
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.98
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.94
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.66
PRK11619	644	lytic murein transglycosylase; Provisional	94.62
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.54
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.49
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.43
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.39
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.31
KOG1310	758	consensus WD40 repeat protein [General function pr	94.03
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.9
KOG3364	149	consensus Membrane protein involved in organellar	93.75
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.66
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.6
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.56
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.51
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.31
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.29
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.21
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.19
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.14
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.09
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.99
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.84
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.57
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.36
KOG2422	665	consensus Uncharacterized conserved protein [Funct	92.36
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.35
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.31
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.17
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.06
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.05
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.93
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.63
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.57
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.55
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.5
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.01
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.82
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.34
COG2912	269	Uncharacterized conserved protein [Function unknow	89.93
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.53
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.33
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	89.22
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.93
COG2912	269	Uncharacterized conserved protein [Function unknow	88.74
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.02
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.37
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.34
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.27
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.96
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.79
KOG1463	411	consensus 26S proteasome regulatory complex, subun	86.77
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.58
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.34
COG3947	361	Response regulator containing CheY-like receiver a	86.25
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.53
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.27
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.28
COG5159	421	RPN6 26S proteasome regulatory complex component [	83.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.9
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.44
KOG2581	493	consensus 26S proteasome regulatory complex, subun	82.06
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.05
COG5187	412	RPN7 26S proteasome regulatory complex component,	81.88
COG3947	361	Response regulator containing CheY-like receiver a	81.12
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	81.12
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	80.73
KOG4014	248	consensus Uncharacterized conserved protein (conta	80.6
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.35

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-45  Score=359.78  Aligned_cols=298  Identities=23%  Similarity=0.276  Sum_probs=289.9

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (676)
                      |..+.+...|.-+-+|-.+|-.+..+|+...|+..|+++++++|+.+++|+++|.+|...+.+++|+..|.+++.+.|++
T Consensus       206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~  285 (966)
T KOG4626|consen  206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH  285 (966)
T ss_pred             HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence            56666777788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (676)
                      ..++-++|.+|..+|..+-|+..|+++++..|..++++.++|..+-..|+..+|..+|.+++.+.|+.+++..++|.++.
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~  365 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR  365 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (676)
                      .+|.+++|...|.++++..|....+..++|.+|.++|++++|+.+|+.++.+.|...+++.++|..|..+|+...|+..|
T Consensus       366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y  445 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY  445 (966)
T ss_pred             HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  666 (676)
                      .+++..+|...+++.+||.+|...|+..+|+..|++++++.|+.++++.++..++.-.
T Consensus       446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v  503 (966)
T KOG4626|consen  446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV  503 (966)
T ss_pred             HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988876543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1e-41  Score=333.60  Aligned_cols=269  Identities=18%  Similarity=0.233  Sum_probs=260.8

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (676)
                      ...+..+.+|.-+++++.+|.+|-..+.|+.|+.+|.+++...|+++.++.++|.+|+.+|..+-|+..|++++++.|+.
T Consensus       240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F  319 (966)
T KOG4626|consen  240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF  319 (966)
T ss_pred             HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence            44556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (676)
                      ++++.++|.++...|+..+|..+|.+++...|..+++..++|.+|.+.|.+++|...|.+++...|....++.++|.+|.
T Consensus       320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k  399 (966)
T KOG4626|consen  320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK  399 (966)
T ss_pred             hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (676)
                      ++|++++|+.+|++++.+.|....++.++|..|..+|+.+.|+.+|.+++..+|...+++.++|.+|...|+..+|+..|
T Consensus       400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHHhccHHH
Q 005808          609 SSGLGIDPSNIECLYLRASCYHAIGEYRE  637 (676)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~  637 (676)
                      +.++++.|+.++++.+++.++.-..++.+
T Consensus       480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  480 RTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             HHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence            99999999999999999998876665544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=9.5e-39  Score=349.50  Aligned_cols=434  Identities=18%  Similarity=0.198  Sum_probs=340.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005808           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (676)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~  120 (676)
                      .+++.+|..|+|++|+.+|+++|++.|++..|.|+|.||+++|+|++|+.+|++||+++|+++++++++|.+|..+|+++
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence            56778899999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcccc
Q 005808          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS  200 (676)
Q Consensus       121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (676)
                      +|+..|..++.+.+-.......+++..-. .......     ...                                   
T Consensus       212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~-----~~~-----------------------------------  250 (615)
T TIGR00990       212 DALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKA-----KEI-----------------------------------  250 (615)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHH-----HHH-----------------------------------
Confidence            99999988866654333222222211100 0000000     000                                   


Q ss_pred             CcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCC
Q 005808          201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD  280 (676)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (676)
                                ...   .+..       .+....+..+...+.                                      
T Consensus       251 ----------l~~---~~~~-------~~~~~~~~~~~~~~~--------------------------------------  272 (615)
T TIGR00990       251 ----------LET---KPEN-------LPSVTFVGNYLQSFR--------------------------------------  272 (615)
T ss_pred             ----------Hhc---CCCC-------CCCHHHHHHHHHHcc--------------------------------------
Confidence                      000   0000       000000000000000                                      


Q ss_pred             cccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhh
Q 005808          281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN  360 (676)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (676)
                          ..                                                                        ..
T Consensus       273 ----~~------------------------------------------------------------------------~~  276 (615)
T TIGR00990       273 ----PK------------------------------------------------------------------------PR  276 (615)
T ss_pred             ----CC------------------------------------------------------------------------cc
Confidence                00                                                                        00


Q ss_pred             HHHHhhHHHHHHhhccCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHH
Q 005808          361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQRELEAA  434 (676)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A  434 (676)
                        .    ..+......++.....++.++..+   ...++|++|+..|++++..   .|....++..+|.++...|++++|
T Consensus       277 --~----~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA  350 (615)
T TIGR00990       277 --P----AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA  350 (615)
T ss_pred             --h----hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence              0    000000001111122233333332   3357899999999999986   477788999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005808          435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (676)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  514 (676)
                      +..|++++..+|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|
T Consensus       351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P  430 (615)
T TIGR00990       351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP  430 (615)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH------H
Q 005808          515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA------Y  588 (676)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~  588 (676)
                      ++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++.+.|.....      +
T Consensus       431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l  510 (615)
T TIGR00990       431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL  510 (615)
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998864322      2


Q ss_pred             HHHHHH-HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          589 HLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       589 ~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      ...+.+ +...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+.
T Consensus       511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL  578 (615)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence            233333 3447999999999999999999999999999999999999999999999999998876553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-40  Score=313.65  Aligned_cols=240  Identities=23%  Similarity=0.300  Sum_probs=210.6

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (676)
                      +.++...|..++..|++-.|...|+.++.++|.+...|+.++.+|....+.++....|.++..++|.++++|+..|++++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            56778888888889999999999999999999888888999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  574 (676)
                      -++++++|+..|++++.++|++..++..++.+.++++++++++..|+.+.+..|..++++...|.++..++++++|++.|
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY  485 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcC------cHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          575 QQVLYIDKR------FSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       575 ~~al~~~~~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      +.++.+.|.      ++..+...|.+.. ..+++..|+..+.++++++|....++..||.+..++|+.++|+++|++++.
T Consensus       486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999998887      5555555554433 358889999999999999999889999999999999999999999999988


Q ss_pred             hCCCcHH
Q 005808          648 LELDSME  654 (676)
Q Consensus       648 ~~p~~~~  654 (676)
                      +.....+
T Consensus       566 lArt~~E  572 (606)
T KOG0547|consen  566 LARTESE  572 (606)
T ss_pred             HHHhHHH
Confidence            7655444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.5e-33  Score=327.64  Aligned_cols=297  Identities=19%  Similarity=0.138  Sum_probs=284.5

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (676)
                      .+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  668 (899)
T TIGR02917       589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN  668 (899)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            44455566788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (676)
                      ..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..+++++...|++ ..+..++.++.
T Consensus       669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~  747 (899)
T TIGR02917       669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALL  747 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987 67888999999


Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (676)
                      ..|++++|+..+++++...|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..+
T Consensus       748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~  826 (899)
T TIGR02917       748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA  826 (899)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 8899999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      ++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.++..++.+++...
T Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG  885 (899)
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999998887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-35  Score=283.93  Aligned_cols=475  Identities=17%  Similarity=0.153  Sum_probs=341.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005808           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (676)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  115 (676)
                      .+...+++.+|..|+|+.|+.+|++||.++ +|+..|+||..||..+|+|++|+.|..+++.++|+|+++|.|+|.+++.
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            566788999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCC
Q 005808          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (676)
Q Consensus       116 l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (676)
                      +|+|++|+..|.++|+.              +|+|..++.|+     .++. ......   ...-..+.+.......+..
T Consensus        83 lg~~~eA~~ay~~GL~~--------------d~~n~~L~~gl-----~~a~-~~~~~~---~~~~~~p~~~~~l~~~p~t  139 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEK--------------DPSNKQLKTGL-----AQAY-LEDYAA---DQLFTKPYFHEKLANLPLT  139 (539)
T ss_pred             cccHHHHHHHHHHHhhc--------------CCchHHHHHhH-----HHhh-hHHHHh---hhhccCcHHHHHhhcChhh
Confidence            99999999999999554              55555555555     2221 000000   0111111222222222222


Q ss_pred             CccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcc
Q 005808          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR  275 (676)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (676)
                      .....+   +.+..+......+|..+..++.+.+.+........ ...+..   ..    .......             
T Consensus       140 ~~~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~---~~----~~~~~~~-------------  195 (539)
T KOG0548|consen  140 NYSLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG-VDELLF---YA----SGIEILA-------------  195 (539)
T ss_pred             hhhhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc-Cccccc---cc----cccccCC-------------
Confidence            222223   67777777777888888888776666554444331 100000   00    0000000             


Q ss_pred             cCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhh
Q 005808          276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML  355 (676)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (676)
                             ...++.                                               .+...+.....         
T Consensus       196 -------~~~~p~-----------------------------------------------~~~~~~~~~~~---------  212 (539)
T KOG0548|consen  196 -------SMAEPC-----------------------------------------------KQEHNGFPIIE---------  212 (539)
T ss_pred             -------CCCCcc-----------------------------------------------cccCCCCCccc---------
Confidence                   000000                                               00000000000         


Q ss_pred             hhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI  435 (676)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  435 (676)
                       +...+....             ......-.+|...+...++..|++.|..++.++ .+...+...+.+++..|.+.+++
T Consensus       213 -d~~ee~~~k-------------~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~  277 (539)
T KOG0548|consen  213 -DNTEERRVK-------------EKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI  277 (539)
T ss_pred             -hhHHHHHHH-------------HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence             001111100             114566688999999999999999999999999 88888999999999999999999


Q ss_pred             HHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005808          436 SDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (676)
Q Consensus       436 ~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (676)
                      ..+..+++......       .+...+|..+...++++.|+.+|.+++.....        ..+.......++++.....
T Consensus       278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~  349 (539)
T KOG0548|consen  278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAER  349 (539)
T ss_pred             cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHH
Confidence            99999887655432       23444666777888899999999997765543        4445556667777777777


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH
Q 005808          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY  588 (676)
Q Consensus       509 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  588 (676)
                      ..-.+|.-..-....|..++..|+|..|+.+|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+....|
T Consensus       350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy  429 (539)
T KOG0548|consen  350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY  429 (539)
T ss_pred             HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence            77777877777777789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808          589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (676)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (676)
                      ...|.++..+.+|++|++.|+++++.+|++.++.-.+..|...+.......+..++
T Consensus       430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            99999999999999999999999999999888888888888765444444444444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.3e-32  Score=316.43  Aligned_cols=298  Identities=17%  Similarity=0.178  Sum_probs=274.6

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (676)
                      .+..+....|.+...+..++.++...|++++|+..+.+++..+|.+...+..++.++...|++++|+..+++++...|.+
T Consensus       521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  600 (899)
T TIGR02917       521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS  600 (899)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            45556667788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (676)
                      ...+..+|.++...|++++|+..|++++...|.++..+..+|.++...|++++|+..+++++..+|++...+..++.++.
T Consensus       601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  680 (899)
T TIGR02917       601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL  680 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (676)
                      ..|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+
T Consensus       681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~  759 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTL  759 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998876 77888999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      +++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++..+....
T Consensus       760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  818 (899)
T TIGR02917       760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK  818 (899)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999988888887643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.5e-31  Score=311.29  Aligned_cols=296  Identities=17%  Similarity=0.098  Sum_probs=203.2

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcccHHHH
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA  434 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~~~A  434 (676)
                      .+......+|.++..++.+|.+++..|++++|+..|+++++.+|++..              ....+|.++...|++++|
T Consensus       291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA  370 (1157)
T PRK11447        291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA  370 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence            444555567777777777777777777777777777777777776532              123446667777777777


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-----------------------
Q 005808          435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI-----------------------  491 (676)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------------  491 (676)
                      +..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.                       
T Consensus       371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~  450 (1157)
T PRK11447        371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR  450 (1157)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence            777777777777777777777777777777777777777777777776655444333                       


Q ss_pred             -------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH
Q 005808          492 -------------------VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (676)
Q Consensus       492 -------------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  552 (676)
                                         ++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++..|.++.
T Consensus       451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence                               3345677777777788877777877777777788888888888888888777777777766


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhcCcCcHHHHHHHH
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG  592 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~a----------------------------------------l~~~~~~~~~~~~la  592 (676)
                      .++.++..+...+++++|+..++++                                        ++..|.++..+..+|
T Consensus       531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La  610 (1157)
T PRK11447        531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA  610 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence            6665555555555555554444321                                        123455556666666


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      .++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..++++++..|++...+..++.++.
T Consensus       611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~  682 (1157)
T PRK11447        611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA  682 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            666667777777777777776667666667777777766677777777777666666666666665555554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=4.1e-31  Score=289.36  Aligned_cols=240  Identities=20%  Similarity=0.242  Sum_probs=221.8

Q ss_pred             cccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005808          428 QRELEAAISDFTEAIQS---NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (676)
Q Consensus       428 ~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (676)
                      .+++++|+..|++++..   .|....++..+|.++...|++++|+..|++++..+|.....+..+|.++...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            36899999999999986   477788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc
Q 005808          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (676)
Q Consensus       505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  584 (676)
                      .+++++..+|+++.+++.+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..|++++...|.+
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH------HHHHHHHH-HHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC------LYLRASCY-HAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      +.++..+|.++...|++++|+..|++++.+.|++...      +...+.++ ...|++++|...++++++++|++..++.
T Consensus       467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~  546 (615)
T TIGR00990       467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA  546 (615)
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            9999999999999999999999999999998875332      23333333 4479999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 005808          658 LQCLAFYQVL  667 (676)
Q Consensus       658 ~~~~~~~~~~  667 (676)
                      .++.++++..
T Consensus       547 ~la~~~~~~g  556 (615)
T TIGR00990       547 TMAQLLLQQG  556 (615)
T ss_pred             HHHHHHHHcc
Confidence            8988887644

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=5.6e-31  Score=306.56  Aligned_cols=282  Identities=20%  Similarity=0.215  Sum_probs=252.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--------------
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--------------  450 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------  450 (676)
                      ..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..              
T Consensus       273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            456899999999999999999999999999999999999999999999999999999999997642              


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----
Q 005808          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL-----  525 (676)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~-----  525 (676)
                      ....+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.     
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            123457888999999999999999999999999999999999999999999999999999999998776655444     


Q ss_pred             -------------------------------------HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q 005808          526 -------------------------------------ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (676)
Q Consensus       526 -------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  568 (676)
                                                           ++...|++++|+..|+++++.+|+++.+++.+|.+|...|+++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence                                                 3456799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------------------------------------
Q 005808          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG-------------------------------------  611 (676)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------------------------------  611 (676)
                      +|+..+++++...|.++..++.++..+...+++++|+..++++                                     
T Consensus       513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999988888887777777777777766543                                     


Q ss_pred             ---hcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808          612 ---LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       612 ---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  666 (676)
                         ++..|.++..+..+|.++...|++++|+..|+++++.+|++++++..++.++...
T Consensus       593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~  650 (1157)
T PRK11447        593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ  650 (1157)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence               2246788889999999999999999999999999999999999999998887543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=9.9e-30  Score=277.11  Aligned_cols=353  Identities=13%  Similarity=0.027  Sum_probs=302.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808           45 KLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (676)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~  123 (676)
                      ++..+|++++|+..+..++...|+ +..++++|.+.+..|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus        51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai  130 (656)
T PRK15174         51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA  130 (656)
T ss_pred             HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            457889999999999999988844 4458888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCcC
Q 005808          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (676)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (676)
                      ..|++++.+.|                                                                     
T Consensus       131 ~~l~~Al~l~P---------------------------------------------------------------------  141 (656)
T PRK15174        131 DLAEQAWLAFS---------------------------------------------------------------------  141 (656)
T ss_pred             HHHHHHHHhCC---------------------------------------------------------------------
Confidence            99998843222                                                                     


Q ss_pred             CcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCccc
Q 005808          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (676)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (676)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (656)
T PRK15174        142 --------------------------------------------------------------------------------  141 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHH
Q 005808          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK  363 (676)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (676)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (656)
T PRK15174        142 --------------------------------------------------------------------------------  141 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (676)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (676)
                                     .++..+..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++.
T Consensus       142 ---------------~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~  205 (656)
T PRK15174        142 ---------------GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP  205 (656)
T ss_pred             ---------------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence                           12556778899999999999999999999999999888877654 47888999999999999988


Q ss_pred             hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHH
Q 005808          444 SNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA----AVEDLSACVKLDKENKS  518 (676)
Q Consensus       444 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~  518 (676)
                      ..|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++    |+..+++++..+|++..
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~  285 (656)
T PRK15174        206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR  285 (656)
T ss_pred             cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence            8753 344455668888899999999999999999999999999999999999999885    89999999999999999


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (676)
                      ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~  365 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA  365 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999998887777788899999


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      |++++|+..|+++++..|++.            ...+++|...|.++++..+....
T Consensus       366 G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~  409 (656)
T PRK15174        366 GKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPPE  409 (656)
T ss_pred             CCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCccc
Confidence            999999999999999988864            34556777777777776655443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.4e-29  Score=275.95  Aligned_cols=377  Identities=13%  Similarity=0.019  Sum_probs=337.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHccc----CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 005808           44 AKLCSLRNWSKAIRILDSLLAQS----YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (676)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~----~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~  119 (676)
                      ..++++.+|+.---+++.+-+..    .+....-..+..+++.|++++|+..+..++...|+++.+++.+|.+.+..|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~   92 (656)
T PRK15174         13 TTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP   92 (656)
T ss_pred             hhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH
Confidence            44567778877766777666654    33333566677899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccc
Q 005808          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (676)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (676)
                      ++|+..|+++++++|++                                                               
T Consensus        93 ~~A~~~l~~~l~~~P~~---------------------------------------------------------------  109 (656)
T PRK15174         93 DAVLQVVNKLLAVNVCQ---------------------------------------------------------------  109 (656)
T ss_pred             HHHHHHHHHHHHhCCCC---------------------------------------------------------------
Confidence            99999999999777653                                                               


Q ss_pred             cCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCC
Q 005808          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (676)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (676)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (656)
T PRK15174        110 --------------------------------------------------------------------------------  109 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhh
Q 005808          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (676)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (676)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (656)
T PRK15174        110 --------------------------------------------------------------------------------  109 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (676)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (676)
                                           +.++..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+.
T Consensus       110 ---------------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~  168 (656)
T PRK15174        110 ---------------------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR  168 (656)
T ss_pred             ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence                                 34556678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 005808          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (676)
Q Consensus       440 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  518 (676)
                      +++...|++..++..++ .+...|++++|+..+++++...|. .......++.++...|++++|+..+++++..+|+++.
T Consensus       169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~  247 (656)
T PRK15174        169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA  247 (656)
T ss_pred             HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence            99999999998887764 478899999999999999998763 3445566788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcccHHH----HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 005808          519 AYTYLGLALSSIGEYKK----AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (676)
                      ++..+|.++...|++++    |+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~  327 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999986    89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                      +...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++....+..+...+.
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~  398 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD  398 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence            99999999999999999999999888888889999999999999999999999999977655554444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.4e-29  Score=257.65  Aligned_cols=461  Identities=15%  Similarity=0.090  Sum_probs=369.3

Q ss_pred             HHHH-HHhcCCHHHHHHHHHHHHccc-CChh---HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHH
Q 005808           42 ELAK-LCSLRNWSKAIRILDSLLAQS-YEIQ---DICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSA  115 (676)
Q Consensus        42 ~~~~-~~~~~~y~~Ai~~y~~ai~~~-~~~~---~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~  115 (676)
                      .|+. +|-.|+|..+..++..+|... ..+.   .++.+|.+|..+|+|++|...|..++..+|++ +-+++++|+.|..
T Consensus       275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~  354 (1018)
T KOG2002|consen  275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK  354 (1018)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence            4444 568999999999999999876 3333   38999999999999999999999999999999 7799999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCC
Q 005808          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (676)
Q Consensus       116 l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (676)
                      .|+++.|+.+|++.+...|+..+...-+..++..........     ..                               
T Consensus       355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~-----d~-------------------------------  398 (1018)
T KOG2002|consen  355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR-----DK-------------------------------  398 (1018)
T ss_pred             hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH-----HH-------------------------------
Confidence            999999999999999999988888776666555442000000     00                               


Q ss_pred             CccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcc
Q 005808          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR  275 (676)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (676)
                                 +..++.+                          +.                                  
T Consensus       399 -----------a~~~l~K--------------------------~~----------------------------------  407 (1018)
T KOG2002|consen  399 -----------ASNVLGK--------------------------VL----------------------------------  407 (1018)
T ss_pred             -----------HHHHHHH--------------------------HH----------------------------------
Confidence                       0000000                          00                                  


Q ss_pred             cCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhh
Q 005808          276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML  355 (676)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (676)
                                                                               ...+....++..++.++......
T Consensus       408 ---------------------------------------------------------~~~~~d~~a~l~laql~e~~d~~  430 (1018)
T KOG2002|consen  408 ---------------------------------------------------------EQTPVDSEAWLELAQLLEQTDPW  430 (1018)
T ss_pred             ---------------------------------------------------------hcccccHHHHHHHHHHHHhcChH
Confidence                                                                     00000111222222222222211


Q ss_pred             hhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHH
Q 005808          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMY-----PEALIGRGTAR  425 (676)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~-----~~~~~~la~~~  425 (676)
                      ..  -.........+.  ....+..++.+...|-.++..|++.+|...|.+++..     +++.     ....+++|.++
T Consensus       431 ~s--L~~~~~A~d~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~  506 (1018)
T KOG2002|consen  431 AS--LDAYGNALDILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL  506 (1018)
T ss_pred             HH--HHHHHHHHHHHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence            11  111122111111  2334467999999999999999999999999999876     2221     23589999999


Q ss_pred             HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005808          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (676)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  505 (676)
                      ...++++.|.+.|..++..+|...+++.++|......++..+|..++..++..+..++.++..+|.++.....+..|.+-
T Consensus       507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~  586 (1018)
T KOG2002|consen  507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK  586 (1018)
T ss_pred             HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999999999998


Q ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHH------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808          506 LSACVKLDK--ENKSAYTYLGLALSS------------IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (676)
Q Consensus       506 ~~~al~~~~--~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  571 (676)
                      |+..++...  .++.+...||.++++            .+.+++|++.|.++++.+|.+..+-..+|.++...|++.+|.
T Consensus       587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~  666 (1018)
T KOG2002|consen  587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR  666 (1018)
T ss_pred             HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence            877766532  456777888887764            356889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      .+|.++.+...+++.+|.++|.||..+|+|..|++.|+.+++..  .+++.++..||.++++.|.+.+|..++.+++.+.
T Consensus       667 dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~  746 (1018)
T KOG2002|consen  667 DIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA  746 (1018)
T ss_pred             HHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            99999998888889999999999999999999999999999764  3568999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhhhh
Q 005808          650 LDSMEKFVLQCLAFYQVLFDM  670 (676)
Q Consensus       650 p~~~~~~~~~~~~~~~~~~~~  670 (676)
                      |.++...++++.+..+.....
T Consensus       747 p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  747 PSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             CccchHHhHHHHHHHHHHHHH
Confidence            999999999999998876543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=9.6e-28  Score=266.55  Aligned_cols=259  Identities=12%  Similarity=0.001  Sum_probs=231.3

Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808          402 SIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE  479 (676)
Q Consensus       402 ~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  479 (676)
                      ..+.+++...|.  ++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....
T Consensus       462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~  539 (987)
T PRK09782        462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD  539 (987)
T ss_pred             HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence            334444445566  88999999999987 889999999999999999765 36667888889999999999999988776


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (676)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  559 (676)
                      |.+ ..+..+|.++...|++++|+.+++++++.+|.....+..++......|++++|+..++++++.+|+ +.++..+|.
T Consensus       540 p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~  617 (987)
T PRK09782        540 MSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARAT  617 (987)
T ss_pred             CCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence            654 557888999999999999999999999999998888777777777889999999999999999997 899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (676)
                      ++.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~  697 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ  697 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          640 KDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       640 ~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      .+|+++++++|++..+....+....
T Consensus       698 ~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        698 HYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HHHHHHHhcCCCCchhhhhhhHHHH
Confidence            9999999999999887666655543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=3.6e-26  Score=254.09  Aligned_cols=216  Identities=14%  Similarity=0.075  Sum_probs=193.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (676)
                      ++.++..+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..++++....|. ...+..+|.++
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHH
Confidence            56677888888876 788889999999998888754 3666777778999999999999998776555 45577889999


Q ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (676)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (676)
                      ...|++++|+.+++++++..|.....+..++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999998888777777777789999999999999999996 89999999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      |++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++....
T Consensus       632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG  691 (987)
T PRK09782        632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD  691 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999987643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.8e-26  Score=239.14  Aligned_cols=269  Identities=19%  Similarity=0.196  Sum_probs=161.0

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      ...+.+|.+|+++..+|+|++|..+|.++++.+|++ .-.++.+|..+...|+++.|+..|++++...|++.+....+|.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            344456666666666666666666666666666655 5555666666666666666666666666666666666666666


Q ss_pred             HHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Q 005808          458 ARAALG----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENKSAYTYLGLALS  528 (676)
Q Consensus       458 ~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~  528 (676)
                      +|...+    ..+.|..++.+++...|.+.++|..++.++....-+.. +..|..++..     .+-.++.+.++|..++
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf  463 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF  463 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence            665554    44556666666666666666666666666554444333 5666555532     2233556666666666


Q ss_pred             HcccHHHHHHHHHHHHhc-----Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808          529 SIGEYKKAEEAHLKAIQL-----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (676)
                      ..|++.+|...|..++..     +++.     ....+++|.++...+++..|.+.|..+++.+|....++..+|......
T Consensus       464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k  543 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK  543 (1018)
T ss_pred             HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence            666666666666666554     1111     123556666666666666666666666666666666666666555555


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      ++..+|...+..++..+..++.+|..+|.++.....+..|.+-|+.+++.
T Consensus       544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~  593 (1018)
T KOG2002|consen  544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK  593 (1018)
T ss_pred             cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence            66666666666666666666666666666666666666666655555543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=1.3e-26  Score=258.18  Aligned_cols=399  Identities=14%  Similarity=0.018  Sum_probs=321.3

Q ss_pred             HhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005808           47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (676)
Q Consensus        47 ~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~  125 (676)
                      .-.|++++|+..|.+++... .....+.++|.++..+|++++|+..++++++++|+++.+++.+|.++...|++++|+..
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            46899999999999998866 44446899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCcCCc
Q 005808          126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR  205 (676)
Q Consensus       126 ~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (676)
                      ++++++..|+.+. ...+..+.-.       .                                                
T Consensus       106 l~~~l~~~P~~~~-~~~la~~l~~-------~------------------------------------------------  129 (765)
T PRK10049        106 AKQLVSGAPDKAN-LLALAYVYKR-------A------------------------------------------------  129 (765)
T ss_pred             HHHHHHhCCCCHH-HHHHHHHHHH-------C------------------------------------------------
Confidence            9999888777655 3222110000       0                                                


Q ss_pred             chhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCcccCC
Q 005808          206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN  285 (676)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (676)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (765)
T PRK10049        130 --------------------------------------------------------------------------------  129 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHHHh
Q 005808          286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN  365 (676)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (676)
                                                                                         +        ....
T Consensus       130 -------------------------------------------------------------------g--------~~~~  134 (765)
T PRK10049        130 -------------------------------------------------------------------G--------RHWD  134 (765)
T ss_pred             -------------------------------------------------------------------C--------CHHH
Confidence                                                                               0        0011


Q ss_pred             hHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcccH---H
Q 005808          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARA-----FQREL---E  432 (676)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~-----~~g~~---~  432 (676)
                      ....+.++....|.++..++.+|.++...|..++|+..++++.. .|...     .....+..+..     ..+++   +
T Consensus       135 Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad  213 (765)
T PRK10049        135 ELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD  213 (765)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence            12255566677888899999999999999999999999987765 54421     11222222222     22334   7


Q ss_pred             HHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 005808          433 AAISDFTEAIQSNPSAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVE  504 (676)
Q Consensus       433 ~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~  504 (676)
                      +|+..++.+++..|.++.       ++......+...|++++|+..|++++...|..+ .+...+|.+|...|++++|+.
T Consensus       214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~  293 (765)
T PRK10049        214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS  293 (765)
T ss_pred             HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence            899999999976443322       222212334677999999999999998865432 244446999999999999999


Q ss_pred             HHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHcC
Q 005808          505 DLSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---------------FLEAWGHLTQFYQDLA  565 (676)
Q Consensus       505 ~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~  565 (676)
                      .|++++..+|.+    ......++.++...|++++|+..++++....|.               ...++..++.++...|
T Consensus       294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g  373 (765)
T PRK10049        294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN  373 (765)
T ss_pred             HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence            999999888765    356777888899999999999999999988763               2456788999999999


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                      ++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++|...++++
T Consensus       374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCcHHHHH
Q 005808          646 LDLELDSMEKFV  657 (676)
Q Consensus       646 l~~~p~~~~~~~  657 (676)
                      ++..|+++.+..
T Consensus       454 l~~~Pd~~~~~~  465 (765)
T PRK10049        454 VAREPQDPGVQR  465 (765)
T ss_pred             HHhCCCCHHHHH
Confidence            999999998643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.6e-25  Score=219.28  Aligned_cols=286  Identities=18%  Similarity=0.163  Sum_probs=265.7

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      ..+++.....+..++..++|.+..++++..++.+|-++.++....-+++..|+..+-...-.+.+...|+.+..|+..|.
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC  320 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence            34588999999999999999999999999999999998888666669999999888888888999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      .|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|...++++-|.
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----C---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (676)
                      ..|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+    .   -...+.++|.++.+.+.+++|+..|++
T Consensus       401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~  480 (611)
T KOG1173|consen  401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK  480 (611)
T ss_pred             HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999984322    1   234688999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (676)
                      ++...|.++.++..+|.+|..+|+++.|+++|.+++-+.|++.-+--.++.+.
T Consensus       481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999976655555443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.8e-26  Score=231.02  Aligned_cols=286  Identities=18%  Similarity=0.216  Sum_probs=264.7

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 005808          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (676)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (676)
                      +..+.........++..+|+.|+..++|++|..+|+.+-+..|-..+..-....+++...+--+--.+.+..+..+|+.+
T Consensus       342 ~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP  421 (638)
T KOG1126|consen  342 FEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP  421 (638)
T ss_pred             HHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc
Confidence            33444555666678889999999999999999999999999998877777777888877765555555667788899999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005808          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (676)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (676)
                      +.|..+|.+|..+++++.|+++|+++++++|....+|..+|.-+.....++.|..+|+.++..+|.+-.+|+.+|.+|.+
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (676)
Q Consensus       530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (676)
                      +++++.|.-+|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++...+..|.++...+++++|+..++
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE  581 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE  581 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      +..+..|++..+++.+|.+|.++|+.+.|+..|.-|+.++|.-...
T Consensus       582 eLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i  627 (638)
T KOG1126|consen  582 ELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI  627 (638)
T ss_pred             HHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence            9999999999999999999999999999999999999999987663

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=1.2e-24  Score=242.68  Aligned_cols=295  Identities=13%  Similarity=0.002  Sum_probs=241.8

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (676)
                      .+.......|.++. ++.+|.++...|++++|+..++++++..|+++.++..+|.++...|..+.|+..++++.. .|..
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~  182 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE  182 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence            44555666888899 999999999999999999999999999999999999999999999999999999987775 5543


Q ss_pred             HH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 005808          449 GE-----AWKRRGQARA-----ALGES---VEAIQDLSKALEFEPNSAD-------ILHERGIVNFKFKDFNAAVEDLSA  508 (676)
Q Consensus       449 ~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~  508 (676)
                      ..     ....+..+..     ..+++   ++|+..++.++...|.++.       +.......+...|++++|+..|++
T Consensus       183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~  262 (765)
T PRK10049        183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR  262 (765)
T ss_pred             HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            11     1222222222     22334   7899999999976444332       222212234677999999999999


Q ss_pred             HHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          509 CVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       509 al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                      +++..+.. ..+...+|.++...|++++|+.+|+++++..|.+    ......++.++...|++++|+..++++....|.
T Consensus       263 ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~  342 (765)
T PRK10049        263 LKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP  342 (765)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence            99886442 2344557999999999999999999999988765    456777888899999999999999999988762


Q ss_pred             ---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          584 ---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       584 ---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                                     ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.+
T Consensus       343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l  422 (765)
T PRK10049        343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL  422 (765)
T ss_pred             eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence                           23567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHH
Q 005808          649 ELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       649 ~p~~~~~~~~~~~~~~~  665 (676)
                      +|++...++.++.++.+
T Consensus       423 ~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        423 EPRNINLEVEQAWTALD  439 (765)
T ss_pred             CCCChHHHHHHHHHHHH
Confidence            99999988888887654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.9e-25  Score=210.75  Aligned_cols=221  Identities=19%  Similarity=0.169  Sum_probs=205.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (676)
                      ..++...|..++..|++-.|...|+.++.++|.+...|..++.+|...++.++..+.|.++..++|.++++|+..|.+++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (676)
                      -++++++|+.-|++++.++|++..++..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY  485 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCC------CHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808          609 SSGLGIDPS------NIECLYLRASCYH-AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD  669 (676)
Q Consensus       609 ~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  669 (676)
                      ++++.+.|.      ++..+.+.|.+.. -.+++..|...+++|++++|.+..++..++....|....
T Consensus       486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI  553 (606)
T ss_pred             HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence            999999998      6666666555432 358999999999999999999999999999888776543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.94  E-value=7.3e-24  Score=194.76  Aligned_cols=332  Identities=16%  Similarity=0.213  Sum_probs=270.1

Q ss_pred             hhhhhhhHHHHH-HHHHH-HHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhH
Q 005808           29 VDSVMASAITAR-IELAK-LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA  105 (676)
Q Consensus        29 ~~~~~~~~~~~~-~~~~~-~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a  105 (676)
                      .+|....+.-++ .++.+ ++..|+|.+|+..|-.||+.+ .+...++.||.+|+.+|+-.-|+.|+.++|++.|+...|
T Consensus        29 a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A  108 (504)
T KOG0624|consen   29 AESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA  108 (504)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence            344444444555 55554 678999999999999999999 677779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCC
Q 005808          106 YILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM  185 (676)
Q Consensus       106 ~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (676)
                      ...+|.+++++|++++|...|.+.|..+|++......-           ..+                            
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq-----------skl----------------------------  149 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ-----------SKL----------------------------  149 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH-----------HHH----------------------------
Confidence            99999999999999999999999966555432110000           000                            


Q ss_pred             ccccccCCCCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCccc
Q 005808          186 SETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTH  265 (676)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (676)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (504)
T KOG0624|consen  150 --------------------------------------------------------------------------------  149 (504)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccchhhcccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhh
Q 005808          266 ASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESR  345 (676)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (676)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (504)
T KOG0624|consen  150 --------------------------------------------------------------------------------  149 (504)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhHhhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR  425 (676)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  425 (676)
                      +.+                              .....+......++..|++..|+.....+++..|-++..+...+.||
T Consensus       150 ~~~------------------------------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  150 ALI------------------------------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY  199 (504)
T ss_pred             HhH------------------------------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            000                              00223445566777889999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH------------HHHHH
Q 005808          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------------RGIVN  493 (676)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~  493 (676)
                      ...|....|+..+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++..++-.            -+.-.
T Consensus       200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~  279 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA  279 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987543322            13345


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  569 (676)
                      ...++|.+++...++.++.+|..+.    ....+..|+..-+++.+|+..+.++++.+|++..++...+.+|+....|+.
T Consensus       280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~  359 (504)
T KOG0624|consen  280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD  359 (504)
T ss_pred             HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence            6678899999999999998888543    344577888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcCcHHHHH
Q 005808          570 ALECLQQVLYIDKRFSKAYH  589 (676)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~  589 (676)
                      |+..|+++.+.++++..+.-
T Consensus       360 AI~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  360 AIHDYEKALELNESNTRARE  379 (504)
T ss_pred             HHHHHHHHHhcCcccHHHHH
Confidence            99999999999888765543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.94  E-value=4.7e-24  Score=202.76  Aligned_cols=285  Identities=15%  Similarity=0.174  Sum_probs=256.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      .+...+.-+..+-.++.+|+++.|++++.-.-+.+.... .+-.++..+++.+  .++..|..+...++..+.-++.++.
T Consensus       415 ~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~  494 (840)
T KOG2003|consen  415 AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT  494 (840)
T ss_pred             hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh
Confidence            344566677889999999999999999987665554432 3345555555554  4788999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (676)
                      +.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+.
T Consensus       495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence            99999999999999999999999999889999999999999999999999999998888888999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (676)
                      .+|++++-++..+-|+++.++..+|.+|-+.|+..+|.+++-......|.+.+..-.+|..|....-+++|+.+|+++.-
T Consensus       575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal  654 (840)
T KOG2003|consen  575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL  654 (840)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL  661 (676)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  661 (676)
                      +.|+........+.|+.+.|+|.+|...|+..-...|.+.+....+..
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr  702 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR  702 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            999988888899999999999999999999999999999887555443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.9e-25  Score=222.39  Aligned_cols=285  Identities=21%  Similarity=0.227  Sum_probs=263.7

Q ss_pred             HHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          383 FRLSRGI--AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       383 ~~~~~a~--~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      .+..+|.  ....+-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-...|-..+..-....++.
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW  398 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW  398 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            3444444  44455677899999999778888889999999999999999999999999999999987777767777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (676)
                      .+.+--+--.+.+..+..+|..|+.|..+|.+|..+++++.|+++|+++++++|....+|..+|.=+.....++.|..+|
T Consensus       399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f  478 (638)
T KOG1126|consen  399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF  478 (638)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence            77776666667778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (676)
Q Consensus       541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (676)
                      +.++..+|.+-.+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-
T Consensus       479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      ..+..|.++..++++++|+..+++..++-|++..+++.++.+|-++.
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999887654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=9.7e-24  Score=219.88  Aligned_cols=279  Identities=18%  Similarity=0.092  Sum_probs=253.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR  455 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l  455 (676)
                      .....+..|..+...|++++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            356677789999999999999999999999999999999999999999999999999999998854332    3568889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSI  530 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~  530 (676)
                      |.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+.     ..+..+|.++...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999887653     2466789999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLS  609 (676)
Q Consensus       531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~  609 (676)
                      |++++|+.+++++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|+..++
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988865 4667889999999999999999999


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      ++++..|+.. .+..++.++...|++++|...++++++..|++......+
T Consensus       274 ~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        274 RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            9999999865 448999999999999999999999999999987655333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.93  E-value=7.8e-23  Score=188.04  Aligned_cols=241  Identities=21%  Similarity=0.278  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EA------------LIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (676)
                      +...+|.+++.+|.+++|...|+.+++.+|++.   ++            +......++..|+...|+.+....+++.|.
T Consensus       108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W  187 (504)
T KOG0624|consen  108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW  187 (504)
T ss_pred             HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence            445667888999999999999999999999652   22            223344455567888888888888888888


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH----
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL----  523 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----  523 (676)
                      +...+...+.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+-..    
T Consensus       188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk  267 (504)
T KOG0624|consen  188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK  267 (504)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888765433211    


Q ss_pred             --------HHHHHHcccHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q 005808          524 --------GLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR  591 (676)
Q Consensus       524 --------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  591 (676)
                              +......++|.++++..++.++.+|..+.    ....+..++..-|++.+|+..+.++++.+|++..++...
T Consensus       268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR  347 (504)
T KOG0624|consen  268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR  347 (504)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence                    11222334444444444444444444221    222233344444444444444444444444444444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      |.+|+....|+.|+..|+++.+.++++..+..
T Consensus       348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  348 AEAYLGDEMYDDAIHDYEKALELNESNTRARE  379 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            44444444444444444444444444444333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=9.6e-23  Score=194.97  Aligned_cols=282  Identities=18%  Similarity=0.169  Sum_probs=258.7

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      .-|.+...-...|.+.+.+.++++|+..|+.+.+.+|-..+-.-....+++-..+-.+-.-..+.+..++.-.++....+
T Consensus       257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI  336 (559)
T KOG1155|consen  257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII  336 (559)
T ss_pred             cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence            36677778888899999999999999999999999998877777778888777766665556667777888788888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  535 (676)
                      |..|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|+++++++|.+-.+|+.+|..|..++...=
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y  416 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY  416 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--
Q 005808          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--  613 (676)
Q Consensus       536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  613 (676)
                      |+-+|+++....|+++..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.+.++.++|..+|++.++  
T Consensus       417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888889999999999999999999999999987  


Q ss_pred             -----CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          614 -----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       614 -----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                           ..|....+...|+.-+.+.+++++|..+..+++.-++...++..
T Consensus       497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~  545 (559)
T KOG1155|consen  497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA  545 (559)
T ss_pred             HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence                 45656678888999999999999999999999998777666543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=2.6e-22  Score=209.13  Aligned_cols=230  Identities=18%  Similarity=0.098  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-----HHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-----AWKRRG  456 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~la  456 (676)
                      ..+..+|..+...|++++|+..|.++++..|.+..++..++.++...|++++|+..+.+++...|.+..     .+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            466788999999999999999999999988888899999999999999999999999999888776532     345566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHH
Q 005808          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKK  535 (676)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~  535 (676)
                      .++...|++++|+..|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            677777777777777777777777766777777777777777777777777777666554 2345556666666666666


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhh
Q 005808          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGL  612 (676)
Q Consensus       536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al  612 (676)
                      |+..++++++..|+... +..++.++...|++++|+..++++++..|++......++..+..  .|+..+|+..+++.+
T Consensus       268 A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~  345 (389)
T PRK11788        268 GLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV  345 (389)
T ss_pred             HHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence            66666666666665433 35566666666666666666666666666555433333322211  335555555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.93  E-value=6.1e-21  Score=208.28  Aligned_cols=441  Identities=10%  Similarity=-0.004  Sum_probs=320.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCChh-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH--HHHH
Q 005808           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK--GCAF  113 (676)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~-~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~--g~~~  113 (676)
                      ...+.++--.+++|+|+.|+..|.++++.+|+.. ...-.+.++...|++++|+..|++++  +|.+...+..+  |.+|
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly  112 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAY  112 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHH
Confidence            4555666778999999999999999999997753 33377788889999999999999999  66555555555  7799


Q ss_pred             HHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCC
Q 005808          114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN  193 (676)
Q Consensus       114 ~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (676)
                      ..+|++++|+..|+++++.+|+.+..+..+..+.-........+                                    
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl------------------------------------  156 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL------------------------------------  156 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH------------------------------------
Confidence            99999999999999999999988766643322221111100000                                    


Q ss_pred             CCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhh
Q 005808          194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI  273 (676)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (676)
                                     ..+.+                                                            
T Consensus       157 ---------------~~l~~------------------------------------------------------------  161 (822)
T PRK14574        157 ---------------KQATE------------------------------------------------------------  161 (822)
T ss_pred             ---------------HHHHH------------------------------------------------------------
Confidence                           00000                                                            


Q ss_pred             cccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhH
Q 005808          274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWD  353 (676)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (676)
                                                                                ....  .+.........+...+
T Consensus       162 ----------------------------------------------------------l~~~--dp~~~~~l~layL~~~  181 (822)
T PRK14574        162 ----------------------------------------------------------LAER--DPTVQNYMTLSYLNRA  181 (822)
T ss_pred             ----------------------------------------------------------hccc--CcchHHHHHHHHHHHh
Confidence                                                                      0000  0000000011111110


Q ss_pred             hhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHH----
Q 005808          354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT--ARAF----  427 (676)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~--~~~~----  427 (676)
                           ...... ....+.++....|.+.+.+..+...+...|-...|.+...+--.........++....  -..+    
T Consensus       182 -----~~~~~~-AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~  255 (822)
T PRK14574        182 -----TDRNYD-ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL  255 (822)
T ss_pred             -----cchHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence                 111111 3445666777788888888888888888888888887666533222111111111111  1111    


Q ss_pred             -----cc---cHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 005808          428 -----QR---ELEAAISDFTEAIQSN---PSA----GEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGI  491 (676)
Q Consensus       428 -----~g---~~~~A~~~~~~al~~~---~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  491 (676)
                           .+   -.+.|+..++..+...   |..    ..+....-.++...|++.+++..|+.+.... |--..+....|.
T Consensus       256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad  335 (822)
T PRK14574        256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS  335 (822)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence                 11   2455777777777633   332    2234455667788899999999999887554 334557788999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc---------------cc
Q 005808          492 VNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NF  550 (676)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~  550 (676)
                      .|+..+++++|+.+|+.++...|      .+......|...+...+++++|..++++..+..|               +.
T Consensus       336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~  415 (822)
T PRK14574        336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW  415 (822)
T ss_pred             HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence            99999999999999999988653      2333457788899999999999999999988544               33


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (676)
                      ......++.++...|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...+|.++.
T Consensus       416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al  495 (822)
T PRK14574        416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM  495 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808          631 AIGEYREAIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~~  656 (676)
                      .+|++.+|......+++..|++....
T Consensus       496 ~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        496 ALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             hhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            99999999999999999999998753

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.91  E-value=2.6e-20  Score=185.24  Aligned_cols=293  Identities=13%  Similarity=0.093  Sum_probs=162.7

Q ss_pred             hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      ++-.|..-..|...+..--..|..+.-..++++++...|.....|...+..+...|+...|...+.++++.+|++.++|+
T Consensus       543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl  622 (913)
T KOG0495|consen  543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL  622 (913)
T ss_pred             HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence            34444444444444444444455555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (676)
                      ....+.....+++.|..+|.++....| ...+|+.-+.+...+++.++|+++++++++..|+....|..+|.++.+.++.
T Consensus       623 aavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i  701 (913)
T KOG0495|consen  623 AAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI  701 (913)
T ss_pred             HHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence            555555555555555555555554443 2344455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (676)
                      +.|...|...++..|..+..|..++.+-...|..-.|...++++.-.+|.+...|.....+-.+.|+.+.|...+.+|++
T Consensus       702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555544


Q ss_pred             CCC------------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808          614 IDP------------------------------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (676)
Q Consensus       614 ~~p------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (676)
                      ..|                              .++.++...|.++....++++|..+|.++++.+|++.++|.....-+
T Consensus       782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe  861 (913)
T KOG0495|consen  782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE  861 (913)
T ss_pred             hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence            333                              23456666777777777777777777777777777777776655444


Q ss_pred             HHhh
Q 005808          664 YQVL  667 (676)
Q Consensus       664 ~~~~  667 (676)
                      .+..
T Consensus       862 l~hG  865 (913)
T KOG0495|consen  862 LRHG  865 (913)
T ss_pred             HHhC
Confidence            4433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.2e-21  Score=185.80  Aligned_cols=281  Identities=16%  Similarity=0.113  Sum_probs=251.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  463 (676)
                      +.++.++......++++.-+...... .|.+...-...|.+.+...+++.|+..|+...+.+|-..+-.-....+++-.+
T Consensus       231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~  310 (559)
T KOG1155|consen  231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN  310 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence            44556666666889999999888887 88888888999999999999999999999999999987766666677776666


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (676)
                      +-.+---+...+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.=|..+.+...|+..|+.|
T Consensus       311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            65555555666777887788888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      ++++|.+-.+|+.+|.+|.-++...=|+-+|+++....|.++..|..+|.||.+.++.++|+++|.+++.....+..++.
T Consensus       391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~  470 (559)
T KOG1155|consen  391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV  470 (559)
T ss_pred             HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHH
Q 005808          624 LRASCYHAIGEYREAIKDYDAALD-------LELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~~~  665 (676)
                      .+|.+|.++++..+|..+|++.++       ..|+...+...++.-+++
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k  519 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK  519 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence            999999999999999999999998       455555665555555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.6e-20  Score=184.52  Aligned_cols=254  Identities=17%  Similarity=0.123  Sum_probs=234.9

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (676)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (676)
                      ++++.....+..++..+++.+..+.++..++.+|-+..++.....++...|+..+-..+-.+.++..|..+..|+..|..
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            34678888999999999999999999999999998887766655599999999988888889999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 005808          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (676)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  572 (676)
                      |...|++.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++.|........+|.-|.+.+++.-|..
T Consensus       322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK  401 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC----CC---CHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID----PS---NIECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                      .|.+++.+.|.+|..+..+|.+.+..+.|.+|..+|+.++..-    +.   ....+.+||.++.+++++++|+.+|+++
T Consensus       402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998432    22   2356899999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHh
Q 005808          646 LDLELDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       646 l~~~p~~~~~~~~~~~~~~~~  666 (676)
                      +.+.|.+...+..+|.+|.-+
T Consensus       482 L~l~~k~~~~~asig~iy~ll  502 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLL  502 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHh
Confidence            999999999999888887543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=5.5e-20  Score=173.54  Aligned_cols=298  Identities=18%  Similarity=0.127  Sum_probs=276.8

Q ss_pred             hhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808          359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF  438 (676)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  438 (676)
                      ....+....++.......-+.+...+..+|.+++..|++.+|+..|+++...+|....+.-..|.++...|+++.-....
T Consensus       210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~  289 (564)
T KOG1174|consen  210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM  289 (564)
T ss_pred             cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence            55566677778788888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 005808          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (676)
Q Consensus       439 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  518 (676)
                      ...+........-|+.-+...+..+++..|+.+-+++++.+|++..++...|.++...|+.++|+-.|+.+..+.|...+
T Consensus       290 ~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~  369 (564)
T KOG1174|consen  290 DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE  369 (564)
T ss_pred             HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence            99998887788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQ-DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (676)
                      .|..+..+|...|.+.+|.-..+.+++..|.+..++..+| .++. .-.--++|.+.+++++.+.|....+-..+|.++.
T Consensus       370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~  449 (564)
T KOG1174|consen  370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ  449 (564)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998886 4443 3344678999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      ..|.++.++..+++.+...|+ ...+..||.++...+.+.+|+.+|..|+.++|++....-
T Consensus       450 ~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~  509 (564)
T KOG1174|consen  450 VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR  509 (564)
T ss_pred             hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence            999999999999999999988 578999999999999999999999999999999987643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.90  E-value=1e-23  Score=207.90  Aligned_cols=264  Identities=20%  Similarity=0.225  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ..+.+|..++..|++++|++++.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            4457799999999999999999766544  488899999999999999999999999999999999988888888888 7


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                      ..+++++|+.+++++.+..+ ++..+..+..++...++++++...++++....  +.++..|..+|.++...|+.++|+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999988764 56777888889999999999999999987655  6778899999999999999999999


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (676)
                      .++++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++...|++++|+.+|+++++.+|++
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          619 IECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      +.++..+|.++...|++++|..+++++++.
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999999999999998763

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.90  E-value=3.5e-20  Score=191.73  Aligned_cols=272  Identities=16%  Similarity=0.143  Sum_probs=222.9

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAW  452 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~  452 (676)
                      |.+.+.|..++.....+|++.+|+-+|.++++.+|.+....+..+.++.+.|+...|+..|.+++...|..     .+..
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i  283 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI  283 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence            34467888999999999999999999999999999999999999999999999999999999999999832     1233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-------------
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE-------------  515 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~-------------  515 (676)
                      ...+..+...++-+.|++.++.++...  ....+.+..++.+++....++.|..........  .++             
T Consensus       284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~  363 (895)
T KOG2076|consen  284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE  363 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence            445777888888899999999998832  233456778899999999999999888776551  011             


Q ss_pred             -------------CHHH-HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          516 -------------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (676)
Q Consensus       516 -------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (676)
                                   +..+ ...++.+....+...+++..+..--...|. .+..+..++.++...|++.+|+.++..+...
T Consensus       364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~  443 (895)
T KOG2076|consen  364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR  443 (895)
T ss_pred             ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence                         1122 455566666666666666665443333343 4788999999999999999999999999877


Q ss_pred             Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          581 DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       581 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      .+ ++..+|+.+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.++....-+
T Consensus       444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            66 4567899999999999999999999999999999999999999999999999999999999877333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=1.8e-19  Score=196.79  Aligned_cols=298  Identities=15%  Similarity=0.014  Sum_probs=241.6

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808          368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (676)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (676)
                      ..+..+...+|.++..++.++..+...++.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|+
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPT  201 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence            35667788899999999999999999999999999999999999985554 55666666677787799999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHH------------------------------------------------HHHHHhcC
Q 005808          448 AGEAWKRRGQARAALGESVEAIQD------------------------------------------------LSKALEFE  479 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~------------------------------------------------~~~al~~~  479 (676)
                      +.+++..+..++...|-...|.+.                                                ++..+...
T Consensus       202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~  281 (822)
T PRK14574        202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW  281 (822)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence            999988888777766654444433                                                33333322


Q ss_pred             ---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc---
Q 005808          480 ---PNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---  548 (676)
Q Consensus       480 ---p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---  548 (676)
                         |..    ..+....-.++...|++.++++.|+.+.... |-...+....|..|...++.++|+.+|.+++...|   
T Consensus       282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~  361 (822)
T PRK14574        282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF  361 (822)
T ss_pred             cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence               221    1123344455677889999999999876554 33456778899999999999999999999988653   


Q ss_pred             ---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          549 ---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---------------RFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       549 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (676)
                         ........|...|...+++++|..++++.....|               +.......++.++...|++.+|.+.+++
T Consensus       362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~  441 (822)
T PRK14574        362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED  441 (822)
T ss_pred             CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence               2344457788999999999999999999987444               2346778899999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  666 (676)
                      .+...|.|+.++..+|.++...|++.+|...++.+..++|++..+...++.+....
T Consensus       442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l  497 (822)
T PRK14574        442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL  497 (822)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999888877776543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.2e-20  Score=181.89  Aligned_cols=283  Identities=22%  Similarity=0.243  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------------------------HHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE------------------------LEAAIS  436 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~  436 (676)
                      +..|..+|..++..|+|++|+..|.+.++.+|++...+..++.++.....                        .+.+..
T Consensus        70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~  149 (539)
T KOG0548|consen   70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV  149 (539)
T ss_pred             hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence            55667778888888888999888888888888888777777766622100                        001111


Q ss_pred             HHHHHHHhCCCc--------------------------------------------------------------HHHHHH
Q 005808          437 DFTEAIQSNPSA--------------------------------------------------------------GEAWKR  454 (676)
Q Consensus       437 ~~~~al~~~~~~--------------------------------------------------------------~~~~~~  454 (676)
                      .....+..+|.+                                                              ......
T Consensus       150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~  229 (539)
T KOG0548|consen  150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE  229 (539)
T ss_pred             HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence            111111111100                                                              113456


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-------SAYTYLGLAL  527 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~  527 (676)
                      +|.......++..|++.+..++.++ .+...+.+.+-+|+..|.+.+.+.....+++......       .+...+|..+
T Consensus       230 lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~  308 (539)
T KOG0548|consen  230 LGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY  308 (539)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence            7888888889999999999999999 8888889999999999999999998888887654432       2333456677


Q ss_pred             HHcccHHHHHHHHHHHHhcCcc--------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808          528 SSIGEYKKAEEAHLKAIQLDRN--------------------------FLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (676)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (676)
                      ...++++.|+.+|.+++.....                          -..--..-|..++..|+|..|+..|.+++..+
T Consensus       309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~  388 (539)
T KOG0548|consen  309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD  388 (539)
T ss_pred             hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            7888999999999988764322                          22233456888999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL  661 (676)
Q Consensus       582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  661 (676)
                      |+++..|.++|.||.++|.+..|+...+.+++++|+....|+..|.++..+.+|++|++.|+++++.+|++.++......
T Consensus       389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r  468 (539)
T KOG0548|consen  389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR  468 (539)
T ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887555544


Q ss_pred             HHH
Q 005808          662 AFY  664 (676)
Q Consensus       662 ~~~  664 (676)
                      +..
T Consensus       469 c~~  471 (539)
T KOG0548|consen  469 CVE  471 (539)
T ss_pred             HHH
Confidence            443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=3.9e-21  Score=181.63  Aligned_cols=289  Identities=20%  Similarity=0.236  Sum_probs=235.9

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005808           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (676)
Q Consensus        35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  113 (676)
                      .+++...+++.++++.+|..|+..|+.||+.+ .+..+|.|||.++..+|+|++|+.+++..+.++|+.++++.+.|.++
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH  127 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence            34556678888999999999999999999999 66677999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCC
Q 005808          114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN  193 (676)
Q Consensus       114 ~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (676)
                      .+++...+|...|+..-                 |.  .+.+.+     ...                            
T Consensus       128 ~a~~~~i~A~~~~~~~~-----------------~~--~~anal-----~~~----------------------------  155 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSKQ-----------------AY--KAANAL-----PTL----------------------------  155 (486)
T ss_pred             hhhHHHHHHHHHhhhhh-----------------hh--HHhhhh-----hhh----------------------------
Confidence            99999999997776330                 00  000001     000                            


Q ss_pred             CCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhh
Q 005808          194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI  273 (676)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (676)
                                                            .   ...                                   
T Consensus       156 --------------------------------------~---~~~-----------------------------------  159 (486)
T KOG0550|consen  156 --------------------------------------E---KLA-----------------------------------  159 (486)
T ss_pred             --------------------------------------h---ccc-----------------------------------
Confidence                                                  0   000                                   


Q ss_pred             cccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhH
Q 005808          274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWD  353 (676)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (676)
                                                                                        .+            
T Consensus       160 ------------------------------------------------------------------~s------------  161 (486)
T KOG0550|consen  160 ------------------------------------------------------------------PS------------  161 (486)
T ss_pred             ------------------------------------------------------------------cc------------
Confidence                                                                              00            


Q ss_pred             hhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808          354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA  433 (676)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~  433 (676)
                                          ....|.-..+.+..+.++...|++++|...--.++++++.+.++++..|.+++..++.+.
T Consensus       162 --------------------~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k  221 (486)
T KOG0550|consen  162 --------------------HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK  221 (486)
T ss_pred             --------------------ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence                                000011144566778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Q 005808          434 AISDFTEAIQSNPSAGE------------AWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK  497 (676)
Q Consensus       434 A~~~~~~al~~~~~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~  497 (676)
                      |+.+|++++.++|+...            .+..-|.-.++.|++..|.+.|..++.++|.+    ...|.+.+.+....|
T Consensus       222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg  301 (486)
T KOG0550|consen  222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG  301 (486)
T ss_pred             HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence            99999999999998743            45667777888889999999999999988876    446788888888899


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Q 005808          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (676)
Q Consensus       498 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  549 (676)
                      +..+|+.....++.+++....++...|.|+..+++|++|++.|+++.+...+
T Consensus       302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999998888888888899999999999999999988887554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1.2e-19  Score=172.88  Aligned_cols=241  Identities=22%  Similarity=0.206  Sum_probs=231.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS  473 (676)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  473 (676)
                      -.++.+|..+.+.++..+.-++.++.+.|.+.+..|++++|.+.|..++..+....++++++|..+..+|+.++|+++|-
T Consensus       469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~  548 (840)
T KOG2003|consen  469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL  548 (840)
T ss_pred             ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence            34899999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH
Q 005808          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA  553 (676)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  553 (676)
                      +.-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+.
T Consensus       549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~  628 (840)
T KOG2003|consen  549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET  628 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence            99888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q 005808          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (676)
Q Consensus       554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (676)
                      .-.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+..-...|.+.+.+..|.++.-.+|
T Consensus       629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            99999999999999999999999999999988888899999999999999999999999999999999999998887777


Q ss_pred             c
Q 005808          634 E  634 (676)
Q Consensus       634 ~  634 (676)
                      -
T Consensus       709 l  709 (840)
T KOG2003|consen  709 L  709 (840)
T ss_pred             c
Confidence            4

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.88  E-value=6.8e-19  Score=175.22  Aligned_cols=293  Identities=15%  Similarity=0.061  Sum_probs=272.4

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808          368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (676)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (676)
                      -.+.+.....|.....|+..+..+...|+...|..++.++++.+|++.+.|+..-.+.....+++.|..+|.++....| 
T Consensus       571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-  649 (913)
T KOG0495|consen  571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-  649 (913)
T ss_pred             HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-
Confidence            3556777888999999999999999999999999999999999999999999999999999999999999999988665 


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (676)
                      ...+|+.-+.+...+++.++|+.+++.+++..|.....|..+|+++.++++.+.|...|...++..|.....|..++.+-
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            46778888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------------------------
Q 005808          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------------------------  583 (676)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------------------  583 (676)
                      ...|+.-.|...++++.-.+|++...|.....+-.+.|+.+.|...+.++++..|+                        
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA  809 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA  809 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999887764                        


Q ss_pred             ------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          584 ------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       584 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                            ++.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++..-.|.+.+.|.
T Consensus       810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~  889 (913)
T KOG0495|consen  810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ  889 (913)
T ss_pred             HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence                  34557778999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHHH
Q 005808          658 LQCL  661 (676)
Q Consensus       658 ~~~~  661 (676)
                      ....
T Consensus       890 avSK  893 (913)
T KOG0495|consen  890 AVSK  893 (913)
T ss_pred             HHhh
Confidence            5543

>PRK12370 invasion protein regulator; Provisional

Probab=99.88  E-value=5.4e-20  Score=197.84  Aligned_cols=265  Identities=14%  Similarity=0.001  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCCcHH
Q 005808          383 FRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSAGE  450 (676)
Q Consensus       383 ~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~  450 (676)
                      .++..|..++..   +++++|+..|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++.
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~  339 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ  339 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence            466677655543   4578999999999999999999999999887744         3489999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005808          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (676)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  530 (676)
                      ++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988777777778889


Q ss_pred             ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          531 GEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (676)
Q Consensus       531 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (676)
                      |++++|+..+++++... |+++..+..+|.++...|++++|...+.++....|....+...++..+...|+  +|...++
T Consensus       420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~  497 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR  497 (553)
T ss_pred             cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence            99999999999999875 77899999999999999999999999999988888888889999999998884  7777777


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      ..++.....+........+|.-.|+.+.+..+ +++.+.+.
T Consensus       498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence            76664433333334488888889999988887 77766543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.88  E-value=2e-19  Score=183.14  Aligned_cols=290  Identities=16%  Similarity=0.126  Sum_probs=248.4

Q ss_pred             hhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808          365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (676)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (676)
                      ..-..+.+..+.+|.++.+.+.++..|..+++.+.|+...+++++. ..+++.+|..++.++...+++.+|+...+.++.
T Consensus       462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~  541 (799)
T KOG4162|consen  462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE  541 (799)
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            3345667778889999999999999999999999999999999999 556799999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHh--
Q 005808          444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---------ILHERGIVNFKFKDFNAAVEDLSACVKL--  512 (676)
Q Consensus       444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~--  512 (676)
                      ..|+|.........+-...++.++|+..+...+........         .....+......++..+|++..+.+...  
T Consensus       542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a  621 (799)
T KOG4162|consen  542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA  621 (799)
T ss_pred             HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence            99998877777777778889999999998887766442222         2222233334445566666666555432  


Q ss_pred             -------------------CCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q 005808          513 -------------------DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (676)
Q Consensus       513 -------------------~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  568 (676)
                                         .|..     ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|+..
T Consensus       622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~  701 (799)
T KOG4162|consen  622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE  701 (799)
T ss_pred             hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH
Confidence                               1111     2467778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH--HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (676)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (676)
                      +|.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++.+|.++++|+.+|.++.+.|+.++|.++|..++
T Consensus       702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999888888  9999999999999999999999999999999999999999


Q ss_pred             hhCCCcHH
Q 005808          647 DLELDSME  654 (676)
Q Consensus       647 ~~~p~~~~  654 (676)
                      ++.+.+|-
T Consensus       782 qLe~S~PV  789 (799)
T KOG4162|consen  782 QLEESNPV  789 (799)
T ss_pred             hhccCCCc
Confidence            99988764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.88  E-value=2e-19  Score=186.25  Aligned_cols=288  Identities=23%  Similarity=0.259  Sum_probs=242.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ...++..|..++..|++++|..++.++++.+|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            67788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcccHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKK  535 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~  535 (676)
                      .+|++.+|.-+|.++++.+|.+....+..+.+|.++|+...|...+.+++...|...     ......+..+...++-+.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999999999999999999999999999998321     222334666677777788


Q ss_pred             HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------
Q 005808          536 AEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLY----------------------------------  579 (676)
Q Consensus       536 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------------------------  579 (676)
                      |++.+..++...  ......+..++.+++....++.|...+.....                                  
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence            888888777622  22233445555666666666665554443322                                  


Q ss_pred             -----------------------------cCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 005808          580 -----------------------------IDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-NIECLYLRASC  628 (676)
Q Consensus       580 -----------------------------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~  628 (676)
                                                   ..| +++..+..++.++...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence                                         111 34567889999999999999999999999987654 46899999999


Q ss_pred             HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 005808          629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLF  668 (676)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  668 (676)
                      |..+|.+++|+.+|++++.+.|++.++...++.++.+...
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~  498 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN  498 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence            9999999999999999999999999999999999887654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=1e-19  Score=166.60  Aligned_cols=239  Identities=13%  Similarity=0.063  Sum_probs=136.0

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (676)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (676)
                      ..+|.||+..|-+.+|.+.++.++...| .++.+..++.+|....+...|+..+...++..|.+...+..++.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            3455555555555555555555555443 344455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL  578 (676)
Q Consensus       499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  578 (676)
                      +++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.+.+..++++-++..|.+++
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          579 YIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       579 ~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      ....   .-.++|+++|.+....|++..|...|+-++..++++.+++.+||.+-.+.|+.++|..++..+-...|+-.+.
T Consensus       386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence            4322   2235556666665566666666666666666566555666666666666666666666666655555555444


Q ss_pred             HHH
Q 005808          656 FVL  658 (676)
Q Consensus       656 ~~~  658 (676)
                      .++
T Consensus       466 ~~N  468 (478)
T KOG1129|consen  466 TTN  468 (478)
T ss_pred             ccc
Confidence            433

>PRK12370 invasion protein regulator; Provisional

Probab=99.85  E-value=3.9e-19  Score=191.25  Aligned_cols=228  Identities=15%  Similarity=0.112  Sum_probs=204.1

Q ss_pred             HHHHHHHHHH---cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHH
Q 005808          418 LIGRGTARAF---QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADI  485 (676)
Q Consensus       418 ~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~  485 (676)
                      ++..|.....   .+.+++|+..|+++++++|++..++..+|.++...         +++++|+..++++++.+|+++.+
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a  340 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA  340 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence            3444544433   24678999999999999999999999999887644         34899999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (676)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  565 (676)
                      +..+|.++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999887777777788899


Q ss_pred             CHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808          566 NSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (676)
Q Consensus       566 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (676)
                      ++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|....++..++..|...|+  +|...+++
T Consensus       421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~  498 (553)
T PRK12370        421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE  498 (553)
T ss_pred             CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence            9999999999999775 78889999999999999999999999999999999988999999999999885  66666666


Q ss_pred             HHh
Q 005808          645 ALD  647 (676)
Q Consensus       645 al~  647 (676)
                      .++
T Consensus       499 ll~  501 (553)
T PRK12370        499 FLE  501 (553)
T ss_pred             HHH
Confidence            555

>TIGR00540 hemY_coli hemY protein

Probab=99.85  E-value=3.3e-18  Score=177.37  Aligned_cols=285  Identities=15%  Similarity=0.056  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQAR  459 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~  459 (676)
                      ....+..|...+..|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            445577888888999999999999999888888888888889999999999999999999988888875 4666678999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcccHHH
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKK  535 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~la~~~~~~g~~~~  535 (676)
                      ...|+++.|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++....    ....-....+..++
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~  243 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE  243 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999888877544443221    11222234444455


Q ss_pred             HHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 005808          536 AEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLS  609 (676)
Q Consensus       536 A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~  609 (676)
                      +...+..+....|    +++..+..++..+...|++++|...++++++..|++....  ..........++...+++.++
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            5667777777666    4788888888888888888888888888888888776431  223333344577888888888


Q ss_pred             HhhcCCCCCH--HHHHHHHHHHHHhccHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHh
Q 005808          610 SGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYD--AALDLELDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       610 ~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~  666 (676)
                      ++++..|+++  ..+..+|.++.+.|++++|.++|+  .+++..|++.. +..++.++.+.
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~  383 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQA  383 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence            8888888888  778888888888888888888888  57778887766 34666665543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.85  E-value=4.8e-21  Score=188.91  Aligned_cols=256  Identities=21%  Similarity=0.213  Sum_probs=123.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005808          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL  486 (676)
Q Consensus       409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  486 (676)
                      +..|. . ..+.+|.+++..|++++|++.+.+.+..  .|++...|..+|.+....++++.|+..|++++..++.++..+
T Consensus         4 ~~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~   81 (280)
T PF13429_consen    4 EFGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY   81 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34555 2 3346799999999999999999766544  488899999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHc
Q 005808          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDL  564 (676)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~  564 (676)
                      ..++.+ ...+++++|+..++++.+..+ ++..+.....++...++++++...++++....  +.++..|..+|.++.+.
T Consensus        82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   82 ERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL  159 (280)
T ss_dssp             --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred             cccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            888888 799999999999999987664 56677778888999999999999999977654  67889999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (676)
Q Consensus       565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (676)
                      |+.++|+..++++++.+|+++.+...+++++...|+++++...+....+..|+++..+..+|.++..+|++++|+.+|++
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            99999999999999999999999999999999999999999999998888888899999999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHhhh
Q 005808          645 ALDLELDSMEKFVLQCLAFYQVLF  668 (676)
Q Consensus       645 al~~~p~~~~~~~~~~~~~~~~~~  668 (676)
                      +++.+|+++.....++.++.+...
T Consensus       240 ~~~~~p~d~~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  240 ALKLNPDDPLWLLAYADALEQAGR  263 (280)
T ss_dssp             HHHHSTT-HHHHHHHHHHHT----
T ss_pred             cccccccccccccccccccccccc
Confidence            999999999999988888776543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=1e-19  Score=166.68  Aligned_cols=243  Identities=14%  Similarity=0.121  Sum_probs=231.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  464 (676)
                      ..+|.||++.|-+.+|.+.++..++..|. ++.+..++.+|....+...|+..+...++..|.+...+...++++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            47899999999999999999999998876 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (676)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (676)
                      +++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.|++..++++-++..|++++
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 005808          545 QLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (676)
Q Consensus       545 ~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (676)
                      ....+   -.++|+++|.+....|++..|..+|+-++..++++..++.++|.+-.+.|+.++|..++..+-...|+-.+.
T Consensus       386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence            87543   378999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             HHHHHHH
Q 005808          622 LYLRASC  628 (676)
Q Consensus       622 ~~~la~~  628 (676)
                      .++++.+
T Consensus       466 ~~Nl~~~  472 (478)
T KOG1129|consen  466 TTNLQFM  472 (478)
T ss_pred             ccceeEE
Confidence            7776654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=8e-20  Score=180.64  Aligned_cols=256  Identities=18%  Similarity=0.208  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  463 (676)
                      -+..|..++..|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            36778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHH
Q 005808          464 ESVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYK  534 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~  534 (676)
                      .-.+|+.++.+.+...|........       ...-......+..-.+.|-.+....|  .++++...||.+|...|+|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            9999999999988877644321110       00001111223344555666666666  67788888888888888888


Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      +|+.+|+.++...|++...|+.||-.+....+..+|+..|.+|+++.|....+++++|..++.+|.|.+|+++|-.++.+
T Consensus       448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888876


Q ss_pred             CCC----------CHHHHHHHHHHHHHhccHHHHH
Q 005808          615 DPS----------NIECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       615 ~p~----------~~~~~~~la~~~~~~g~~~~A~  639 (676)
                      .+.          +..+|-.|-.++..+++.+-+.
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            443          1246666666666666665443

>TIGR00540 hemY_coli hemY protein

Probab=99.85  E-value=4.2e-18  Score=176.61  Aligned_cols=277  Identities=14%  Similarity=0.027  Sum_probs=234.1

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 005808          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (676)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (676)
                      ....+..|.....++..|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++...+..|+++
T Consensus       108 ~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~  187 (409)
T TIGR00540       108 AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK  187 (409)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            344555677777888999999999999999999999999999875 4666679999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhCC----CCHHHHH
Q 005808          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAYT  521 (676)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~  521 (676)
                      .++..++.++...|++++|...+.+..+....++..+.    ....-+...+..+.+...+..+....|    +++..+.
T Consensus       188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~  267 (409)
T TIGR00540       188 EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKI  267 (409)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence            99999999999999999999999999987554444321    222222444555556678888888777    5899999


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH--HHHHHHHHHHHH
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLHG  597 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~  597 (676)
                      .++..+...|++++|...++++++..|++....  ..........++...+++.++++++..|+++  .....+|+++.+
T Consensus       268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~  347 (409)
T TIGR00540       268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK  347 (409)
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            999999999999999999999999999987532  2333334446888999999999999999999  889999999999


Q ss_pred             cCCHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          598 LGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       598 ~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      .|++++|.++|+  .+++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus       348 ~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       348 HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999  67888888544 669999999999999999999998763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.84  E-value=1.1e-18  Score=172.03  Aligned_cols=232  Identities=17%  Similarity=0.157  Sum_probs=150.6

Q ss_pred             CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808          395 GKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (676)
Q Consensus       395 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  470 (676)
                      +..+.++..+.+++...|   . .+..|+.+|.++...|++++|+..|.++++.+|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            456677777777775333   2 256677778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (676)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  550 (676)
                      .|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            8888888888777777778888777788888888888888777777632211 123344567777777776655433221


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVL-------YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECL  622 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~  622 (676)
                        .|. .+.++...|+...+ ..+..+.       +..|....+|+.+|.++...|++++|+.+|++++..+| +.++..
T Consensus       199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence              111 23444445554332 1222222       33444556677777777777777777777777777664 445555


Q ss_pred             HHHHHHHHH
Q 005808          623 YLRASCYHA  631 (676)
Q Consensus       623 ~~la~~~~~  631 (676)
                      +.+..+...
T Consensus       275 ~~~~e~~~~  283 (296)
T PRK11189        275 YALLELALL  283 (296)
T ss_pred             HHHHHHHHH
Confidence            555444444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.83  E-value=1.4e-17  Score=171.60  Aligned_cols=262  Identities=14%  Similarity=0.100  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHH
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-AWKRRGQARAA  461 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~  461 (676)
                      ..+..|...+..|+|+.|.+.+.+..+..+.....+...+.+....|+++.|..++.++.+.+|++.. .....+.++..
T Consensus        86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         86 KQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            34455555555666666665555543332221222222244446666666666666666665555532 22233556666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Q 005808          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD----------------------------  513 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------------  513 (676)
                      .|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..                            
T Consensus       166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~  245 (398)
T PRK10747        166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS  245 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            6666666666666666666666666666666666666666665555544433                            


Q ss_pred             --------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          514 --------------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (676)
Q Consensus       514 --------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  579 (676)
                                    |+++.+...++..+...|+.++|...++++++. +.++......+.+  ..++.+++++.+++.++
T Consensus       246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHh
Confidence                          334445555555555556666666655555553 2233332222222  23555555555555555


Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      ..|+++..+..+|.++...|++++|..+|+++++..|++ ..+..++.++.++|+.++|..+|++++.+
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            556555555566666666666666666666666555552 33445555666666666666666555543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.83  E-value=2.7e-18  Score=169.39  Aligned_cols=224  Identities=23%  Similarity=0.255  Sum_probs=183.4

Q ss_pred             cccHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005808          428 QRELEAAISDFTEAIQSNP---S-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV  503 (676)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  503 (676)
                      .+..+.++..+.+++...|   . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4577889999999996444   2 36789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                      ..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            99999999999999999999999999999999999999999999998742222 22345578999999999887654332


Q ss_pred             cHHHHHHHHHHHHHcCCHHHH--HHHHHHhh----cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CcHHH
Q 005808          584 FSKAYHLRGLLLHGLGQHKKA--IKDLSSGL----GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEK  655 (676)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A--~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~  655 (676)
                      ..  |. .+.+....|+..++  +..+.+.+    +..|...++|+.+|.++...|++++|+.+|+++++.+| +..+.
T Consensus       198 ~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~  273 (296)
T PRK11189        198 EQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH  273 (296)
T ss_pred             cc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence            22  22 34555556665443  33333332    44556678999999999999999999999999999997 44444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=2e-19  Score=177.84  Aligned_cols=233  Identities=18%  Similarity=0.249  Sum_probs=208.3

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (676)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (676)
                      +..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            66899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHH
Q 005808          499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK  569 (676)
Q Consensus       499 ~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~  569 (676)
                      -.+|+..+.+-+...|........       ...-......+..-.+.|-.+....|  .++.+...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887654321110       00011112234455667777777777  689999999999999999999


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      |+.+|+.++...|++...|..+|-.+....+.++|+..|.+|+++.|...++++++|.+++.+|.|++|.++|-.||.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 005808          650 LD  651 (676)
Q Consensus       650 p~  651 (676)
                      +.
T Consensus       529 ~k  530 (579)
T KOG1125|consen  529 RK  530 (579)
T ss_pred             hc
Confidence            66

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=5.5e-19  Score=167.24  Aligned_cols=271  Identities=26%  Similarity=0.307  Sum_probs=243.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +.-....|..++...+|.+|+..+..+++..|+++..|...+.+++..|++++|....++.+.+.|.....+...+.++.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            44556778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHH---------------hcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005808          461 ALGESVEAIQDLSKAL---------------EFE---PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al---------------~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (676)
                      ..++..+|...++..-               ..+   |....+-...+.++...|++++|...--..+++++.+.++++.
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v  208 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV  208 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence            9888888776655211               111   2223345567889999999999999999999999999999999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SK  586 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~  586 (676)
                      .|.++...++.+.|+..|++++.++|++            ...+..-|.-.++.|++..|.++|..++.++|++    ..
T Consensus       209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak  288 (486)
T KOG0550|consen  209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK  288 (486)
T ss_pred             cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence            9999999999999999999999999986            3456778888999999999999999999999965    46


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .|.++|.+...+|+..+|+...+.+++++|....++...|.|+..+++|++|.+.|+++++...+
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            78999999999999999999999999999999999999999999999999999999999998776

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.83  E-value=4.6e-18  Score=149.34  Aligned_cols=206  Identities=19%  Similarity=0.104  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005808          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (676)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (676)
                      .+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..++.
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~  115 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          530 IGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (676)
Q Consensus       530 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (676)
                      +|++++|...|++++..  .+.....+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|+|..|..+
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence            77777777777777763  2344677778888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      +++.....+-..+.+.....+-...|+.+.|..+=.+.....|...+.
T Consensus       196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            888777777667777777777788888888888777777778877663

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.82  E-value=6.8e-18  Score=148.30  Aligned_cols=207  Identities=22%  Similarity=0.213  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ..+.+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                      .+|++++|...|++++..  .+.....+.++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999998864  345577888899999999999999999999999999888888888999999999999988


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (676)
Q Consensus       539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  587 (676)
                      +++......+-....+.....+-...|+-+.+-.+=.+.-...|.....
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            8888888777777777777778888888888888777777777766543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.82  E-value=8.8e-18  Score=161.65  Aligned_cols=202  Identities=18%  Similarity=0.134  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (676)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+...+..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            34555555666666666666666666665556555566666666666666666666666666666666666666666666


Q ss_pred             HcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (676)
                      ..|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|.++..+..+|.++...|++++|..
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666665532  33455666677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      .+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            77777777666677777777777777777777777766655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.82  E-value=1.3e-16  Score=177.80  Aligned_cols=85  Identities=12%  Similarity=0.002  Sum_probs=66.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHccc---CChhHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCC
Q 005808           44 AKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIRDCDKALQ--LDPTLLQAYILKGCAFSALGR  118 (676)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~---~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~l~~  118 (676)
                      ..+...|++++|+..|.......   ++...|.....++.+.|+++.|...+...+.  ..|+ +..+..+..+|.+.|+
T Consensus        95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g~  173 (697)
T PLN03081         95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKCGM  173 (697)
T ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcCCC
Confidence            44567889999999998876542   5667788888888888998888888777765  3454 6678888889999999


Q ss_pred             HHHHHHHHHHH
Q 005808          119 KEEALSVWEKG  129 (676)
Q Consensus       119 ~~~A~~~~~~a  129 (676)
                      +++|.+.|++.
T Consensus       174 ~~~A~~lf~~m  184 (697)
T PLN03081        174 LIDARRLFDEM  184 (697)
T ss_pred             HHHHHHHHhcC
Confidence            99999888877

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.82  E-value=1.4e-17  Score=160.26  Aligned_cols=201  Identities=21%  Similarity=0.241  Sum_probs=149.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      .+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            36677788888888888888888888888888888888888888888888888888888888888888877888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      ...|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|++...+..+|.++...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888877643  3445566667777777777777777777777777776666777777777777777777


Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (676)
Q Consensus       538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (676)
                      .++++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            7777776666666666666666666667777766666555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=3.1e-19  Score=163.47  Aligned_cols=108  Identities=29%  Similarity=0.400  Sum_probs=100.8

Q ss_pred             hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005808           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG  110 (676)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g  110 (676)
                      .-..++.-+.+++++++.++|.+|+..|++||+++ .|+.+|||||.+|.++|.|+.|+++|++||.+||++.++|.|+|
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            44566777799999999999999999999999999 88888999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 005808          111 CAFSALGRKEEALSVWEKGYEHALHQSAD  139 (676)
Q Consensus       111 ~~~~~l~~~~~A~~~~~~al~~~~~~~~~  139 (676)
                      .+|..+|++++|+.+|++||+++|+....
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDNESY  185 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence            99999999999999999998888887633

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.81  E-value=1.5e-16  Score=146.15  Aligned_cols=272  Identities=17%  Similarity=0.145  Sum_probs=242.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHH
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQ  457 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~  457 (676)
                      --|..|..++-..+.++|+..|..+++.+|...++.+.+|.++...|..+.|+..-+..+. .|+.     ..+...+|.
T Consensus        37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~  115 (389)
T COG2956          37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR  115 (389)
T ss_pred             HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence            3456788888899999999999999999999999999999999999999999998776655 4543     347788999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccc
Q 005808          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGE  532 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~  532 (676)
                      -|+..|-++.|...|....+....-..++..+..+|....+|++|++..++..++.+...     ..+..++..+....+
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999887766778999999999999999999999999999987653     456778888888999


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (676)
                      .+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +.+.-.+..+|.+.|+.++.+..+.++
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999976 567888999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808          612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (676)
                      .+..+. +.+-..++..-....-.+.|..++.+-+...|+-...+
T Consensus       276 ~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~  319 (389)
T COG2956         276 METNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH  319 (389)
T ss_pred             HHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence            998887 56777778877777778889999999999999765543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.81  E-value=4.7e-17  Score=169.52  Aligned_cols=208  Identities=18%  Similarity=0.118  Sum_probs=188.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (676)
                      .++...|...|-++++++|....++..+|.+|...-+...|.++|.++.++++.+..++-..+..|....+++.|.....
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            35588899999999999999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             HHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808          542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (676)
Q Consensus       542 ~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (676)
                      .+-+..|..  ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            777776654  456777999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD  669 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  669 (676)
                      ...+..+.+...+|+|.+|+..+...+............++.++.+.+.+
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd  680 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD  680 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999988777666666677776665544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.81  E-value=1.7e-17  Score=172.71  Aligned_cols=282  Identities=14%  Similarity=0.116  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      .|..+|..+...+++..|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+....
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~  643 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN  643 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence            34446666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHH
Q 005808          463 GESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKL-------D-KENKSAYTYLGLAL  527 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~-~~~~~~~~~la~~~  527 (676)
                      |.|.+|+..+...+......       .+++...+..+...|-...|..++++.++.       . -++...|..+|.++
T Consensus       644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac  723 (1238)
T KOG1127|consen  644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC  723 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence            77777777666665543322       233444444444444444444444444332       1 12222222222211


Q ss_pred             HHcccH-----------------------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHH--------cCCHHHH
Q 005808          528 SSIGEY-----------------------------KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------LANSEKA  570 (676)
Q Consensus       528 ~~~g~~-----------------------------~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~~~~~~A  570 (676)
                      .-.-..                             --+.+++-..+... .++..|+++|..|.+        +.+...|
T Consensus       724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~~~~A  802 (1238)
T KOG1127|consen  724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKDACTA  802 (1238)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence            110000                             01111111111111 114455666655544        1223356


Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      +.++.++++...++...|..+|.+ ...|++.-|.-.|-+.....|.....|.++|.++.+..+++-|...|.++..++|
T Consensus       803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP  881 (1238)
T KOG1127|consen  803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP  881 (1238)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence            666666666666666666666665 4446666666666666666666666666666666666666666666666666666


Q ss_pred             CcHHHHHHHHHHHHHh
Q 005808          651 DSMEKFVLQCLAFYQV  666 (676)
Q Consensus       651 ~~~~~~~~~~~~~~~~  666 (676)
                      .+...|...+++--..
T Consensus       882 ~nl~~WlG~Ali~eav  897 (1238)
T KOG1127|consen  882 LNLVQWLGEALIPEAV  897 (1238)
T ss_pred             hhhHHHHHHHHhHHHH
Confidence            6666665555544433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.81  E-value=8.8e-15  Score=164.88  Aligned_cols=267  Identities=14%  Similarity=0.022  Sum_probs=198.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKR  454 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~  454 (676)
                      +...|..+...|...|++++|+.+|..+.... ..+...|..+...+.+.|++++|...|.++...    .| +...+..
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna  584 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA  584 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence            46677777778888888888888888876542 123667778888888888888888888887653    33 3456777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Q 005808          455 RGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~  532 (676)
                      +...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|.++.... ..+...+..+...+...|+
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~  664 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD  664 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            7778888888888888888887765 3456778888888888888888888888877652 2235677777888888888


Q ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (676)
Q Consensus       533 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (676)
                      +++|.+++..+.+.. +.+...+..+...|.+.|++++|...|++....  .| +...|..+...|.+.|++++|+++|+
T Consensus       665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~  743 (1060)
T PLN03218        665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLS  743 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888888888887654 334677888888888888888888888877543  33 45678888888888888888888888


Q ss_pred             HhhcC--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          610 SGLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       610 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      ++...  .|+ ...|..+...+.+.|++++|..++.++++..
T Consensus       744 eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        744 EMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            77643  344 5666677778888888888888888887643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.80  E-value=4.3e-16  Score=173.76  Aligned_cols=266  Identities=10%  Similarity=-0.042  Sum_probs=230.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRR  455 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l  455 (676)
                      +.+...|..+...|...|++++|+.+|+++.+.. .-+...+..+...+...|++++|...+..+++.. +.+..++..+
T Consensus       287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L  366 (697)
T PLN03081        287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL  366 (697)
T ss_pred             CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence            3457788899999999999999999999997643 2246788999999999999999999999999875 5567788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYK  534 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~  534 (676)
                      ...|.+.|++++|...|+++.+   .+...|..+...|.+.|+.++|++.|+++.... ..+...+..+...+...|..+
T Consensus       367 i~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~  443 (697)
T PLN03081        367 VDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE  443 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence            9999999999999999998754   356789999999999999999999999988753 234666788888999999999


Q ss_pred             HHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          535 KAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       535 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      +|..+|+.+.+..+  .+...|..+...+.+.|+.++|.+.+++.- ..| +...|..+...+...|+++.|...+++.+
T Consensus       444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~  521 (697)
T PLN03081        444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLY  521 (697)
T ss_pred             HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            99999999986432  235678889999999999999999988652 333 46779999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      +..|++...|..++.+|...|++++|.+.++...+.
T Consensus       522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999988765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.1e-15  Score=141.95  Aligned_cols=88  Identities=25%  Similarity=0.198  Sum_probs=76.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc--CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 005808           42 ELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (676)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~--~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~  119 (676)
                      ++..++.+++|..||..+.-....+  .....-.=.|.|++++|+|++|+..|+-+.+.+.-..+..+.++.+++=+|.|
T Consensus        28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            5788899999999999999888776  33334456789999999999999999999998888889999999999999999


Q ss_pred             HHHHHHHHHH
Q 005808          120 EEALSVWEKG  129 (676)
Q Consensus       120 ~~A~~~~~~a  129 (676)
                      .+|...-.+|
T Consensus       108 ~eA~~~~~ka  117 (557)
T KOG3785|consen  108 IEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHhhC
Confidence            9999777777

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.80  E-value=9.7e-15  Score=164.54  Aligned_cols=233  Identities=17%  Similarity=0.049  Sum_probs=196.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKR  454 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~  454 (676)
                      +...+..+...+...|++++|..+|.++...    .|+ ...+..+...|.+.|++++|...|+.+.+.+ +.+...|..
T Consensus       541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns  619 (1060)
T PLN03218        541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI  619 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence            4667888888899999999999999998763    344 6788888889999999999999999998876 456778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Q 005808          455 RGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIG  531 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g  531 (676)
                      +...|.+.|++++|+.+|.++...  .| +...|..+...+...|++++|.+++..+.+.. +.+...+..+...|.+.|
T Consensus       620 LI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G  698 (1060)
T PLN03218        620 AVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK  698 (1060)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            999999999999999999998876  34 46788889999999999999999999998764 445778899999999999


Q ss_pred             cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          532 EYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (676)
Q Consensus       532 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (676)
                      ++++|...|+++.... ..+...|..+...|.+.|++++|+++|+++...  .| +...|..+...+.+.|++++|..++
T Consensus       699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~  777 (1060)
T PLN03218        699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLL  777 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999886542 234678999999999999999999999988754  34 4667777888999999999999999


Q ss_pred             HHhhcCC
Q 005808          609 SSGLGID  615 (676)
Q Consensus       609 ~~al~~~  615 (676)
                      ..+.+..
T Consensus       778 ~~M~k~G  784 (1060)
T PLN03218        778 SQAKEDG  784 (1060)
T ss_pred             HHHHHcC
Confidence            9998753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.80  E-value=7.5e-16  Score=158.87  Aligned_cols=195  Identities=14%  Similarity=0.072  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI--------GRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      +.++..++..+...|++++|+..+.++.+..+.++....        .+........+-+.....++......|+++.++
T Consensus       187 ~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~  266 (398)
T PRK10747        187 PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ  266 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH
Confidence            344444455566666777777666666665544332211        111111111122222233333323334455556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      ..++..+...|+.++|...++++++. |.++.....++.+  ..++.+++++.+++.++.+|+++..+..+|.++...++
T Consensus       267 ~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~  343 (398)
T PRK10747        267 VAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE  343 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence            66666666666666666666666553 2244333333332  23555566666666666666666656666666666666


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  579 (676)
                      +++|..+|+++++..|++. .+..++.++...|+.++|..+|++++.
T Consensus       344 ~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        344 WQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6666666666665555532 234555555566666666666655544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.5e-16  Score=150.50  Aligned_cols=234  Identities=17%  Similarity=0.170  Sum_probs=124.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (676)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (676)
                      ...|++++--.+-...+..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.
T Consensus       277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia  356 (564)
T KOG1174|consen  277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA  356 (564)
T ss_pred             HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence            33444444444444444444444444555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH-HHcccHHHHHHHHHHHHhcCcc
Q 005808          472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG-LAL-SSIGEYKKAEEAHLKAIQLDRN  549 (676)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~-~~~g~~~~A~~~~~~al~~~p~  549 (676)
                      |+.+..+.|...+.|..+..+|...|++.+|.-....+++..|.+...+..+| .++ ..-.--++|.+.+++++.+.|.
T Consensus       357 FR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~  436 (564)
T KOG1174|consen  357 FRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI  436 (564)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence            55555555555555555555555555555555555555555555555555443 222 2222334555555555555555


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005808          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (676)
Q Consensus       550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  626 (676)
                      ...+...++.++...|.+..++..+++.+...|+ ...+..+|.++...+.+++|+.+|..++.++|++......+-
T Consensus       437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR  512 (564)
T ss_pred             cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            5555555555555555555555555555555543 334555555555555555555555555555555554444443

>PLN03077 Protein ECB2; Provisional

Probab=99.79  E-value=2.3e-15  Score=172.08  Aligned_cols=277  Identities=11%  Similarity=-0.003  Sum_probs=195.6

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  458 (676)
                      .+...+..+...|...|++++|..+|+++.+   .+...|..+...+...|++++|+..|+++....+.+...+..+...
T Consensus       422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a  498 (857)
T PLN03077        422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA  498 (857)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence            3456677778888888888888888887643   3456788888888888888888888888876544455566666667


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          459 RAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      +...|..+.+.+.+..+++... .+..+...+...|.+.|+.++|...|...    +.+...|..+...|...|+.++|+
T Consensus       499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~  574 (857)
T PLN03077        499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAV  574 (857)
T ss_pred             HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHH
Confidence            7777777777777777765532 23445566677777778888887777764    455667777777777788888888


Q ss_pred             HHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808          538 EAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       538 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (676)
                      ..|+++.+.  .|+ ...+..+...+.+.|..++|..+|+...+..+  .+...|..+..++.+.|++++|.+.+++. .
T Consensus       575 ~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~  652 (857)
T PLN03077        575 ELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-P  652 (857)
T ss_pred             HHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-C
Confidence            888777654  233 44455555667777778888777777763322  23466777777777788888887777775 2


Q ss_pred             CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                      ..|+ ..+|..+-..+...|+.+.|....+++++++|++...|..++..|..
T Consensus       653 ~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~  703 (857)
T PLN03077        653 ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD  703 (857)
T ss_pred             CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence            4454 56666666677777777777777777777778777777777766654

>PLN02789 farnesyltranstransferase

Probab=99.79  E-value=7e-17  Score=158.33  Aligned_cols=227  Identities=15%  Similarity=0.099  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 005808          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF--NAAVEDLS  507 (676)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~  507 (676)
                      .++|+..+.++++++|++..+|...+.++..+| ++++++..+++++..+|++..+|...+.++...|+.  ++++.++.
T Consensus        53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~  132 (320)
T PLN02789         53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR  132 (320)
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence            334444444444444444444444444444444 334444444444444444444444444444444432  34444444


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhc
Q 005808          508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANS----EKALECLQQVLYI  580 (676)
Q Consensus       508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~  580 (676)
                      ++++.+|++..+|..++.++...|+++++++++.++++.+|.+..+|...+.+....   |.+    ++++.+..+++..
T Consensus       133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~  212 (320)
T PLN02789        133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA  212 (320)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence            445555555555555555554445555555555555555555555554444444333   111    3455555566666


Q ss_pred             CcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc------------------cHHHH
Q 005808          581 DKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG------------------EYREA  638 (676)
Q Consensus       581 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~~~~A  638 (676)
                      +|++..+|..++.++..    .++..+|+..+.+++...|.++.++..|+.+|....                  ..++|
T Consensus       213 ~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  292 (320)
T PLN02789        213 NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLA  292 (320)
T ss_pred             CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHH
Confidence            66666666666555555    234455666666666666666666666666665422                  33667


Q ss_pred             HHHHHHHHhhCCCcHHHHH
Q 005808          639 IKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       639 ~~~~~~al~~~p~~~~~~~  657 (676)
                      ...++..-+.+|=-...|.
T Consensus       293 ~~~~~~l~~~d~ir~~yw~  311 (320)
T PLN02789        293 QAVCSELEVADPMRRNYWA  311 (320)
T ss_pred             HHHHHHHHhhCcHHHHHHH
Confidence            7777777555664444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.78  E-value=4e-15  Score=152.15  Aligned_cols=272  Identities=20%  Similarity=0.204  Sum_probs=230.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGESVEAIQDLSK  474 (676)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (676)
                      ...++++.++++++.+|+|+.+.+.++.-|...++.+.|+.+..++++. ..++..+|..++.++...+++.+|+.+.+.
T Consensus       459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999 456689999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH---------HHHHHHcccHHHHHHHHHHHHh
Q 005808          475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL---------GLALSSIGEYKKAEEAHLKAIQ  545 (676)
Q Consensus       475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~  545 (676)
                      ++...|+|.........+-...++.++|+..+...+........+...+         +......++..+|+...+++..
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            9999999888777777888889999999999888877654332222222         2222233344445544444332


Q ss_pred             c---------------------Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q 005808          546 L---------------------DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (676)
Q Consensus       546 ~---------------------~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (676)
                      .                     .|..     ...|...+..+...++.++|..++.++-.+.|..+..|+..|.++...|
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~  698 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG  698 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence            1                     1111     3567788999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK--DYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      +..+|.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++|.++++|+++|.++.+.+
T Consensus       699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G  768 (799)
T KOG4162|consen  699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG  768 (799)
T ss_pred             hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999988888  999999999999999999999886544

>PLN02789 farnesyltranstransferase

Probab=99.78  E-value=2.8e-16  Score=154.08  Aligned_cols=234  Identities=16%  Similarity=0.131  Sum_probs=206.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH--H
Q 005808          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES--V  466 (676)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~--~  466 (676)
                      ++...+.+++|+..+.++++.+|.+..+|..++.++...| ++++++..+.+++..+|++..+|...+.++...|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            3566789999999999999999999999999999999998 689999999999999999999999999999999874  7


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---ccH----HHHHHH
Q 005808          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY----KKAEEA  539 (676)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~  539 (676)
                      +++.++.++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|..++.+....   |.+    ++++.+
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999998776   333    578888


Q ss_pred             HHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC----------------
Q 005808          540 HLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG----------------  599 (676)
Q Consensus       540 ~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----------------  599 (676)
                      ..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++..++.++....                
T Consensus       206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~  285 (320)
T PLN02789        206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE  285 (320)
T ss_pred             HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence            999999999999999999999987    456678999999999999999999999999998643                


Q ss_pred             --CHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          600 --QHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       600 --~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                        ..++|...++..-+.+|=-...|.
T Consensus       286 ~~~~~~a~~~~~~l~~~d~ir~~yw~  311 (320)
T PLN02789        286 LSDSTLAQAVCSELEVADPMRRNYWA  311 (320)
T ss_pred             cccHHHHHHHHHHHHhhCcHHHHHHH
Confidence              235677777777555554334443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.76  E-value=3.4e-14  Score=142.57  Aligned_cols=433  Identities=12%  Similarity=0.047  Sum_probs=268.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCChhH-HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 005808           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (676)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~  119 (676)
                      .+.-++|..++|.+.+...+..+...|.+.. ....|..+..+|+-++|...++.++..||...--|..+|.++..-.+|
T Consensus        12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y   91 (700)
T KOG1156|consen   12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY   91 (700)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence            3556889999999999999999997766555 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccc
Q 005808          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (676)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (676)
                      ++|++||+.|+.+.|+...-+..+.-|...+.+.. +.     .++                                  
T Consensus        92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~-~~-----~~t----------------------------------  131 (700)
T KOG1156|consen   92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE-GY-----LET----------------------------------  131 (700)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh-hH-----HHH----------------------------------
Confidence            99999999998888888776666655444433221 11     000                                  


Q ss_pred             cCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCC
Q 005808          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (676)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (676)
                                                        ...... .                                      
T Consensus       132 ----------------------------------r~~LLq-l--------------------------------------  138 (700)
T KOG1156|consen  132 ----------------------------------RNQLLQ-L--------------------------------------  138 (700)
T ss_pred             ----------------------------------HHHHHH-h--------------------------------------
Confidence                                              000000 0                                      


Q ss_pred             CcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhh
Q 005808          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (676)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (676)
                            .+                                                 ..-..+..    +.....+....
T Consensus       139 ------~~-------------------------------------------------~~ra~w~~----~Avs~~L~g~y  159 (700)
T KOG1156|consen  139 ------RP-------------------------------------------------SQRASWIG----FAVAQHLLGEY  159 (700)
T ss_pred             ------hh-------------------------------------------------hhHHHHHH----HHHHHHHHHHH
Confidence                  00                                                 00000000    00000000001


Q ss_pred             hHHHHhhHHHHHHhhccCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 005808          360 NEAKRNKKFCVTRISKSKSI-----SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA  434 (676)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  434 (676)
                      ..+............ ..+.     .....+.........|.+++|++.+...-..--+........|.++...+++++|
T Consensus       160 ~~A~~il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA  238 (700)
T KOG1156|consen  160 KMALEILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA  238 (700)
T ss_pred             HHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence            111111111111111 1111     1224455566666777777777766655433333344556677778888888888


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHH--------------H---HHhc
Q 005808          435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGI--------------V---NFKF  496 (676)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~--------------~---~~~~  496 (676)
                      ...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|.... ...++.              +   .++.
T Consensus       239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~-p~Rlplsvl~~eel~~~vdkyL~~~l~K  317 (700)
T KOG1156|consen  239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC-PRRLPLSVLNGEELKEIVDKYLRPLLSK  317 (700)
T ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc-chhccHHHhCcchhHHHHHHHHHHHhhc
Confidence            88888888888888777777666664222333333 445444444332210 000000              0   0000


Q ss_pred             -------------CCHHHHHHHHHHHHHh-----C--------------CCCH--HHHHHHHHHHHHcccHHHHHHHHHH
Q 005808          497 -------------KDFNAAVEDLSACVKL-----D--------------KENK--SAYTYLGLALSSIGEYKKAEEAHLK  542 (676)
Q Consensus       497 -------------~~~~~A~~~~~~al~~-----~--------------~~~~--~~~~~la~~~~~~g~~~~A~~~~~~  542 (676)
                                   .+.... .++++.+..     .              |...  ..++.++.-+...|+++.|..+++.
T Consensus       318 g~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~  396 (700)
T KOG1156|consen  318 GVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL  396 (700)
T ss_pred             CCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                         111111 122222211     0              1112  2344567777888899999999999


Q ss_pred             HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-----
Q 005808          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-----  617 (676)
Q Consensus       543 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----  617 (676)
                      ++...|..++.+..-|+++...|+.++|..++..+.+++..+..+-..-|.-..+.++.++|.+.+.+.-+...+     
T Consensus       397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L  476 (700)
T KOG1156|consen  397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNL  476 (700)
T ss_pred             HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhH
Confidence            998888888888888999999999999999999888887766655556777888888888888887776554321     


Q ss_pred             ----CHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          618 ----NIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       618 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                          ..+....-|.+|.++|++..|++-|..+-+.
T Consensus       477 ~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~  511 (700)
T KOG1156|consen  477 AEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH  511 (700)
T ss_pred             HHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence                1123334578888888888888877666544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.75  E-value=1.8e-14  Score=144.61  Aligned_cols=291  Identities=15%  Similarity=0.121  Sum_probs=182.2

Q ss_pred             HHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (676)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (676)
                      .+.....|........+++...+..++....+.++++-....-.+.++..|..-..|...+..+...|++..|...++..
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef  169 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF  169 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666777777777777777777777777777777777777777777777777777777777777777766666


Q ss_pred             HHhC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005808          442 IQSN---PSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (676)
Q Consensus       442 l~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (676)
                      .+..   |..     .........+....|.+++|++.+..--...-+........+.++...+++++|...+...+..+
T Consensus       170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn  249 (700)
T KOG1156|consen  170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN  249 (700)
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence            5543   222     22333444555566666666666554333333333445556777777777888888887777777


Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCcccHHHHHHHHHH-----------------HHHcC----------
Q 005808          514 KENKSAYTYLGLALSSIGEYKKAE-EAHLKAIQLDRNFLEAWGHLTQF-----------------YQDLA----------  565 (676)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-----------------~~~~~----------  565 (676)
                      |++...+..+-.++..-.+.-+++ ..|...-+..|.... ...++..                 .++.|          
T Consensus       250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~-p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S  328 (700)
T KOG1156|consen  250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC-PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS  328 (700)
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc-chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence            777777666666665333333333 444444444433200 0000000                 00000          


Q ss_pred             --CHHHHHHHHHHHH-------hc----C--------cCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808          566 --NSEKALECLQQVL-------YI----D--------KRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (676)
Q Consensus       566 --~~~~A~~~~~~al-------~~----~--------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (676)
                        +..+-...+++.+       .-    +        |..  .+.++.++..+...|+++.|..+++.|+...|+-++.+
T Consensus       329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly  408 (700)
T KOG1156|consen  329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY  408 (700)
T ss_pred             HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence              0000111222221       10    0        111  23456788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          623 YLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                      ...|+++...|+.++|..++..+-+++-.+.
T Consensus       409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  409 LVKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence            9999999999999999999999999876543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.9e-15  Score=139.06  Aligned_cols=235  Identities=21%  Similarity=0.211  Sum_probs=213.3

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 005808          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVN  493 (676)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~  493 (676)
                      +..|.-+....+.++|+..|..+++.+|...+++..+|.++...|..+.|+..-+..+.. |+.     ..+...+|.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence            455777777889999999999999999999999999999999999999999998877654 433     34788999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCCHH
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSE  568 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~  568 (676)
                      +..|-++.|...|........--..++..+..+|....+|++|++..++..++.+..     ...+..++..+....+.+
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999887666667889999999999999999999999999988765     567888999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      .|+..+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..+|.++|+.++...++.++.+
T Consensus       198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986 47889999999999999999999999999


Q ss_pred             hCCCcHH
Q 005808          648 LELDSME  654 (676)
Q Consensus       648 ~~p~~~~  654 (676)
                      ..+....
T Consensus       278 ~~~g~~~  284 (389)
T COG2956         278 TNTGADA  284 (389)
T ss_pred             ccCCccH
Confidence            8887543

>PLN03077 Protein ECB2; Provisional

Probab=99.75  E-value=1e-14  Score=166.88  Aligned_cols=262  Identities=12%  Similarity=-0.004  Sum_probs=222.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQA  458 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~  458 (676)
                      +...|..+...+...|++++|+.+|+++....+.+...+..+-..+...|..+.+...+..+++..- .+......+...
T Consensus       454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~  533 (857)
T PLN03077        454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL  533 (857)
T ss_pred             CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence            3456777788888999999999999999876555677778888888999999999999999887643 234556678899


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHH
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKA  536 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A  536 (676)
                      |.+.|+.++|...|+..    +.+...|..+...|...|+.++|++.|+++.+.  .|+ ...+..+...+...|..++|
T Consensus       534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea  608 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQG  608 (857)
T ss_pred             HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHH
Confidence            99999999999999886    557889999999999999999999999998875  344 44566666789999999999


Q ss_pred             HHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          537 EEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       537 ~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      ..+|+.+.+..+  .+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++
T Consensus       609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l  686 (857)
T PLN03077        609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFEL  686 (857)
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence            999999985432  23678899999999999999999999886 34554 677888888888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      .|++...+..++.+|...|++++|.+..+...+.
T Consensus       687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            9999999999999999999999999999887653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.74  E-value=6.3e-16  Score=157.92  Aligned_cols=250  Identities=18%  Similarity=0.187  Sum_probs=164.6

Q ss_pred             HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH
Q 005808          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (676)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (676)
                      ......|........+|..|..+|+|+.|+..|+.+++.-             ....|.             ..|.-...
T Consensus       190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l-------------~k~~G~-------------~hl~va~~  243 (508)
T KOG1840|consen  190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRIL-------------EKTSGL-------------KHLVVASM  243 (508)
T ss_pred             hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------------HHccCc-------------cCHHHHHH
Confidence            3445566666677777777777777777777777777650             000000             01111122


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CC
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KE  515 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~  515 (676)
                      ...+|.+|..++++.+|+..|++++.+        +|....++.++|.+|...|++++|..++++++.+.        |.
T Consensus       244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~  323 (508)
T KOG1840|consen  244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE  323 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence            224556666666666666666666543        22223456666666666666666666666665542        11


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 005808          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID------  581 (676)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------  581 (676)
                      -...+..++.++...+++++|+.++++++++.        +.-+..+.++|.+|..+|++++|.+.+++++...      
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~  403 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK  403 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence            23445666777777777777777777776652        2336677888888888888888888888888653      


Q ss_pred             --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          582 --KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       582 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                        +.....+..+|..+.+.+++.+|...|.++..+       .|+....+.+|+.+|..+|++++|.++.++++.
T Consensus       404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence              223456778888888888888888888877654       344457888999999999999999999988874

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.72  E-value=2.2e-15  Score=153.95  Aligned_cols=233  Identities=19%  Similarity=0.191  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEA  451 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~  451 (676)
                      ...+...+..--..--+..|+..+.+..... |.-......+|.+|...+++.+|+..|++++.+        +|.-..+
T Consensus       206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~  285 (508)
T KOG1840|consen  206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT  285 (508)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3444444444444444555555544443321 221233345888888888888888888888865        2333557


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C---C
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----K---E  515 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~---~  515 (676)
                      +.+||.+|...|++++|..++++++++.        |.-...+..++.++...+++++|..++++++++.     +   .
T Consensus       286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~  365 (508)
T KOG1840|consen  286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN  365 (508)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence            7888888888888888888888887663        2224467788888999999999999999888763     2   2


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q 005808          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------  580 (676)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------  580 (676)
                      -+..+.++|.+|..+|++++|.+.+++++.+.        +.....+..+|..|.+.+++.+|...|.++..+       
T Consensus       366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~  445 (508)
T KOG1840|consen  366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD  445 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC
Confidence            24678889999999999999999999999874        223567888999999999999999999888765       


Q ss_pred             CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (676)
                      .|+....+.+||.+|..+|+++.|+++.+.++.
T Consensus       446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  446 HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            344557799999999999999999999998874

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=6.7e-12  Score=121.49  Aligned_cols=444  Identities=14%  Similarity=0.101  Sum_probs=306.2

Q ss_pred             HHHHHH-HhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005808           41 IELAKL-CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (676)
Q Consensus        41 ~~~~~~-~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~  118 (676)
                      ++.++. -.++++.+|...|.+|+..+ .++..+..-|.+-.+.++...|-..+++|+.+-|.--+-++..-..-..+|+
T Consensus        77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN  156 (677)
T KOG1915|consen   77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN  156 (677)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence            344442 46789999999999999999 9999999999999999999999999999999999999999988888899999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcc
Q 005808          119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC  198 (676)
Q Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (676)
                      ...|.+.|++-++..|+.-.=...+ ...--.........+...+-.                                 
T Consensus       157 i~gaRqiferW~~w~P~eqaW~sfI-~fElRykeieraR~IYerfV~---------------------------------  202 (677)
T KOG1915|consen  157 IAGARQIFERWMEWEPDEQAWLSFI-KFELRYKEIERARSIYERFVL---------------------------------  202 (677)
T ss_pred             cHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHhhHHHHHHHHHHHHhe---------------------------------
Confidence            9999999999988888764322211 111111111011100000000                                 


Q ss_pred             ccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCC
Q 005808          199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS  278 (676)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (676)
                                                                  +.                                  
T Consensus       203 --------------------------------------------~H----------------------------------  204 (677)
T KOG1915|consen  203 --------------------------------------------VH----------------------------------  204 (677)
T ss_pred             --------------------------------------------ec----------------------------------
Confidence                                                        00                                  


Q ss_pred             CCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhh
Q 005808          279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET  358 (676)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (676)
                                                                                       .....+.++..+...
T Consensus       205 -----------------------------------------------------------------P~v~~wikyarFE~k  219 (677)
T KOG1915|consen  205 -----------------------------------------------------------------PKVSNWIKYARFEEK  219 (677)
T ss_pred             -----------------------------------------------------------------ccHHHHHHHHHHHHh
Confidence                                                                             000012222222211


Q ss_pred             hhHHHHhhHHHHHHh---hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcccH--
Q 005808          359 SNEAKRNKKFCVTRI---SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALIGRGTARAFQREL--  431 (676)
Q Consensus       359 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~--  431 (676)
                      .... ..........   ...+......+..-|..-..+..++.|..+|.-+++.-|.+-.  .+-..-..-.+-|+.  
T Consensus       220 ~g~~-~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g  298 (677)
T KOG1915|consen  220 HGNV-ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG  298 (677)
T ss_pred             cCcH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence            1110 0011111111   1112222334445556666677888999999999988887732  333333333344543  


Q ss_pred             -HHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHH---H-----Hh
Q 005808          432 -EAAI-----SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD--ILHERGIV---N-----FK  495 (676)
Q Consensus       432 -~~A~-----~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~---~-----~~  495 (676)
                       ++++     --|++.+..+|.+.++|+..-.+....|+.+.-.+.|++++...|...+  .|.....+   |     +.
T Consensus       299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle  378 (677)
T KOG1915|consen  299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE  378 (677)
T ss_pred             hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence             2232     2466778888999999999888888889999999999999987775433  22222211   1     24


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808          496 FKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (676)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  571 (676)
                      ..+.+.+.+.|+.++++-|..    +.+|...|....++.+...|.+++-.++-..|.+ ........+-.++++++...
T Consensus       379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcR  457 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCR  457 (677)
T ss_pred             hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHH
Confidence            678888999999999988865    4678888888888899999999999999988884 44555566777889999999


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      .+|++.++..|.+..+|...|.+-..+|+.+.|...|+-|++...-+.  ..|......-...|.++.|...|++.++..
T Consensus       458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999988654333  344455556677899999999999999988


Q ss_pred             CCcHHHHHHHHHHHHHh
Q 005808          650 LDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       650 p~~~~~~~~~~~~~~~~  666 (676)
                      +... .|..  .+.|+.
T Consensus       538 ~h~k-vWis--FA~fe~  551 (677)
T KOG1915|consen  538 QHVK-VWIS--FAKFEA  551 (677)
T ss_pred             ccch-HHHh--HHHHhc
Confidence            7765 4443  344443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.69  E-value=4.7e-14  Score=145.02  Aligned_cols=275  Identities=15%  Similarity=0.042  Sum_probs=197.1

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH----HHHHHHHHHHhCCCcHH
Q 005808          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA----AISDFTEAIQSNPSAGE  450 (676)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~  450 (676)
                      .......+..+..|..+...|++++|...++++++.+|.+..++.. +..+...|++..    +...+.......|....
T Consensus        37 ~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (355)
T cd05804          37 AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY  115 (355)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence            3344556778888999999999999999999999999998877765 555555554443    44444333345666777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Q 005808          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLA  526 (676)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~  526 (676)
                      .+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.++.+++...|.++    ..+..++.+
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999999999999999999998876432    345678999


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcc--cHHHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhcCcC--cHHHHHHHHHHHH
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLH  596 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~~~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~  596 (676)
                      +...|++++|+..+++++...|.  ......   .+...+...|....+..+  + .......+.  ........+.++.
T Consensus       196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~  275 (355)
T cd05804         196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA  275 (355)
T ss_pred             HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence            99999999999999998766552  221111   222233334433333332  1 111111111  2233346788888


Q ss_pred             HcCCHHHHHHHHHHhhcCCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          597 GLGQHKKAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      ..|+.++|...++........         ........+.++...|++++|...+..++.+-.
T Consensus       276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~  338 (355)
T cd05804         276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA  338 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999998877553221         246677889999999999999999999987653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.8e-12  Score=127.75  Aligned_cols=285  Identities=15%  Similarity=0.081  Sum_probs=190.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMY-------PEALIGRGTARAFQRELEAAISDFTEAIQS  444 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (676)
                      +-+.+|..|..+...|+|.+|++.++++++.        +.+.       ..+...++.++..+|+..+|...|...+..
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            4678899999999999999999999999432        1111       345678899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCC----HH-HHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808          445 NPSAGEAWKRRGQARAALGE----SV-EAIQDLSKALEFEPN----------SADILHERGIVNFKFKDFNAAVEDLSAC  509 (676)
Q Consensus       445 ~~~~~~~~~~la~~~~~~g~----~~-~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (676)
                      +|.+.........-......    ++ .++..++......++          -..++.+.+.+.+..+..+.+.+.....
T Consensus       254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l  333 (652)
T KOG2376|consen  254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL  333 (652)
T ss_pred             cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence            88776443333222222111    11 122222222211111          1234556666666667666666655544


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hc
Q 005808          510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVL--------YI  580 (676)
Q Consensus       510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~  580 (676)
                      -...|..............+...+.+|..++....+..|.. ..+...++.+.+.+|++..|++.+...+        +.
T Consensus       334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~  413 (652)
T KOG2376|consen  334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA  413 (652)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence            33344433222333333344447889999999999998887 6778888999999999999999998333        22


Q ss_pred             CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                      . ..|.+-..+-.++...++.+-|...+..++..       .+.....+..++..-.+.|+-++|...+++.++.+|++.
T Consensus       414 ~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~  492 (652)
T KOG2376|consen  414 K-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT  492 (652)
T ss_pred             c-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence            1 23444555556667777766677777666643       222234556677777888999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 005808          654 EKFVLQCLAFYQ  665 (676)
Q Consensus       654 ~~~~~~~~~~~~  665 (676)
                      +....+..+|-+
T Consensus       493 ~~l~~lV~a~~~  504 (652)
T KOG2376|consen  493 DLLVQLVTAYAR  504 (652)
T ss_pred             HHHHHHHHHHHh
Confidence            988877776654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=2e-15  Score=129.03  Aligned_cols=116  Identities=22%  Similarity=0.246  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCChh------HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ------DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK  109 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~------~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~  109 (676)
                      +...+.+++++|.+|+|.+|..-|+.||+++|...      +|.|||.|+++++.++.||.+|.+||+++|++-+|+.|+
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            34445788999999999999999999999994432      389999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 005808          110 GCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (676)
Q Consensus       110 g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~  151 (676)
                      +.+|.++.++++|+..|.++++++|..-.....+.++.|...
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN  216 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence            999999999999999999999999998888888888888643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.64  E-value=4.8e-14  Score=135.42  Aligned_cols=196  Identities=17%  Similarity=0.048  Sum_probs=108.5

Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H
Q 005808          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---I  485 (676)
Q Consensus       412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  485 (676)
                      +..+..++.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++..|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            33456666666666666666666666666666666543   35566666666666666666666666666665443   4


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (676)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  565 (676)
                      ++.+|.++...                          ++.++...|++++|+..+++++..+|++...+..+..+....+
T Consensus       110 ~~~~g~~~~~~--------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~  163 (235)
T TIGR03302       110 YYLRGLSNYNQ--------------------------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN  163 (235)
T ss_pred             HHHHHHHHHHh--------------------------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence            55555555443                          0001111245555555555555555555433322211111000


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHhccHHHHHHHH
Q 005808          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDY  642 (676)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~  642 (676)
                          .             .......+|.++...|++.+|+..+++++...|+.   +.+++.+|.++..+|++++|..++
T Consensus       164 ----~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       164 ----R-------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             ----H-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                0             01123356666777777777777777777665543   466777777777777777777766


Q ss_pred             HHHHhhCC
Q 005808          643 DAALDLEL  650 (676)
Q Consensus       643 ~~al~~~p  650 (676)
                      +.+....|
T Consensus       227 ~~l~~~~~  234 (235)
T TIGR03302       227 AVLGANYP  234 (235)
T ss_pred             HHHHhhCC
Confidence            66655544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.63  E-value=3.7e-14  Score=136.19  Aligned_cols=190  Identities=16%  Similarity=0.162  Sum_probs=158.1

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--
Q 005808          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--  450 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--  450 (676)
                      ..+..++.++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..++++++..|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            3466789999999999999999999999999999999875   68899999999999999999999999999998765  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808          451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (676)
Q Consensus       451 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (676)
                       +++.+|.++...        |++++|+..|++++..+|++...+..+..+....+    .             ......
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~  170 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL  170 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence             788999999876        78999999999999999998765543332211110    0             012235


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  582 (676)
                      .+|.++...|++.+|+..+++++...|+.   +.+++.+|.++...|++++|..+++.+....|
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            68888999999999999999999987654   67899999999999999999998888776554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.63  E-value=2.4e-12  Score=122.70  Aligned_cols=263  Identities=16%  Similarity=0.091  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQAR  459 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~  459 (676)
                      .......|..-+..|+|.+|.....+.-+..+....++..-+......|+++.+-.++.++-+..+++ ..+....+.+.
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            44556677778889999999999999888888777888888899999999999999999999885544 55677889999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------------------------
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK-------------------------  514 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-------------------------  514 (676)
                      ...|++..|.....+++...|.++.++.....+|...|+|......+.+..+..-                         
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999888877655321                         


Q ss_pred             -----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          515 -----------------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (676)
Q Consensus       515 -----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (676)
                                       +++.+...++.-+...|+.++|.+...++++..-+.. ....++  ...-++...=++..++.
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence                             1233344455556666777777777776666543322 111111  22356666666666777


Q ss_pred             HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       578 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      ++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++-
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777766 56677777777777777777777777764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.59  E-value=4.6e-14  Score=122.61  Aligned_cols=125  Identities=14%  Similarity=0.048  Sum_probs=95.3

Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      ..+++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            45667777777764   445677777778888888888888777787777888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      +++.+++.+|.++..+|++++|+..|++++++.|+++..+..++.+..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            778888888888888888888888888888888887777766665543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.58  E-value=8.2e-12  Score=129.77  Aligned_cols=269  Identities=17%  Similarity=0.106  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      .+.++..+.++...|++++|+..+......-.+...++-.+|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            46777888888999999999999988888888888888899999999999999999999999999999988888887773


Q ss_pred             HcC-----CHHHHHHHHHHHHhcCCCCH--------------------------------HHHHHHHHHHHhcCCHHHHH
Q 005808          461 ALG-----ESVEAIQDLSKALEFEPNSA--------------------------------DILHERGIVNFKFKDFNAAV  503 (676)
Q Consensus       461 ~~g-----~~~~A~~~~~~al~~~p~~~--------------------------------~~~~~la~~~~~~~~~~~A~  503 (676)
                      ...     +.+.-...|+......|...                                .++..+-.+|....+..-..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence            332     45666777777766665431                                12222222333222222222


Q ss_pred             HHHHHHHHh---------------CCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 005808          504 EDLSACVKL---------------DKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (676)
Q Consensus       504 ~~~~~al~~---------------~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  566 (676)
                      ..+......               .|...  .+++.++..|...|++++|+.+.++++...|..++.+...|.++...|+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence            222222211               11112  3557789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--C-------HHHHHHHHHHHHHhccHHH
Q 005808          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--N-------IECLYLRASCYHAIGEYRE  637 (676)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~  637 (676)
                      +.+|...++.+..+++.+-.+-...+..+++.|+.++|.+.+......+.+  .       .+.....|.+|.+.|++..
T Consensus       244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999888889999999999999999999888765521  1       2344567999999999999


Q ss_pred             HHHHHHHHHhhC
Q 005808          638 AIKDYDAALDLE  649 (676)
Q Consensus       638 A~~~~~~al~~~  649 (676)
                      |++.|..+.+..
T Consensus       324 ALk~~~~v~k~f  335 (517)
T PF12569_consen  324 ALKRFHAVLKHF  335 (517)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888753

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.7e-10  Score=111.88  Aligned_cols=249  Identities=13%  Similarity=0.107  Sum_probs=201.7

Q ss_pred             HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH---HHcccHHH
Q 005808          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE-------ALIGRGTAR---AFQRELEA  433 (676)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~---~~~g~~~~  433 (676)
                      ...++........+|.+-+.++..-..--..|+.+.-.+.|++++...|....       +|..+-.++   ....+.+.
T Consensus       305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er  384 (677)
T KOG1915|consen  305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER  384 (677)
T ss_pred             hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            34455667778889999999999999999999999999999999988775422       122222222   34578899


Q ss_pred             HHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808          434 AISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (676)
Q Consensus       434 A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (676)
                      +...|+.++++-|..    ...|...|.....+.+...|.+.+-.++...|.+ ..+.....+-.++++++....+|++.
T Consensus       385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkf  463 (677)
T KOG1915|consen  385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKF  463 (677)
T ss_pred             HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999998864    6789999999999999999999999999999965 45566777788899999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808          510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (676)
Q Consensus       510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  587 (676)
                      +...|.+..+|...|..-..+|+.+.|..+|+-++....-+.  ..|......-...|.++.|..+|++.++..+... +
T Consensus       464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-v  542 (677)
T KOG1915|consen  464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-V  542 (677)
T ss_pred             HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-H
Confidence            999999999999999999999999999999999998765443  3444555566778999999999999999887654 7


Q ss_pred             HHHHHHHHH-----HcC-----------CHHHHHHHHHHhhcC
Q 005808          588 YHLRGLLLH-----GLG-----------QHKKAIKDLSSGLGI  614 (676)
Q Consensus       588 ~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~  614 (676)
                      |...|..-.     +.+           +...|...|++|...
T Consensus       543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~  585 (677)
T KOG1915|consen  543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY  585 (677)
T ss_pred             HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence            777766554     444           567788888888754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=2.4e-12  Score=115.03  Aligned_cols=207  Identities=18%  Similarity=0.157  Sum_probs=149.2

Q ss_pred             ccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005808          429 RELEAAISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (676)
Q Consensus       429 g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  502 (676)
                      .+.++-+++....+..      .++...++-....+....|+.+-|..++++.....|.+..+....|..+...|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            4566666666665543      2333445555566666777777777777777777777777777777777777888888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (676)
Q Consensus       503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  582 (676)
                      +++|+..+..+|.+..++...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-..|
T Consensus       106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence            88888777777777777777777777777777777777777777777778888888888777888888878877777777


Q ss_pred             CcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccH
Q 005808          583 RFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY  635 (676)
Q Consensus       583 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  635 (676)
                      .++..+..+|.+++-.|   ++.-|.++|.++++++|.+...++.+-.+....-+.
T Consensus       186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~  241 (289)
T KOG3060|consen  186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI  241 (289)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence            77777777777777665   556677777777777776666666665555444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.57  E-value=9.4e-13  Score=135.34  Aligned_cols=205  Identities=16%  Similarity=0.108  Sum_probs=170.7

Q ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005808          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (676)
Q Consensus       411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  487 (676)
                      +|+.+.++..+|.++...|+.+.+...+.++....|.+   .+.....+.++...|++++|...+++++..+|.+..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            79999999999999999999999999998888877754   556777888999999999999999999999999987766


Q ss_pred             HHHHHHHhcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 005808          488 ERGIVNFKFKD----FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (676)
Q Consensus       488 ~la~~~~~~~~----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  563 (676)
                      . +..+...|+    ...+...+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            5 555554444    44444444443345677777888889999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcCcH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          564 LANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       564 ~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      .|++++|+.++.+++...|..+    ..+..+|.++...|++++|+..|++++...|
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            9999999999999998876432    3466899999999999999999999987666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.56  E-value=1e-13  Score=120.43  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005808          402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN  481 (676)
Q Consensus       402 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  481 (676)
                      .+|+++++.+|++   ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3444555555442   3344555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (676)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (676)
                      ++.+++.+|.++...|++++|+..|++++...|+++..+..++.+.
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.56  E-value=3.9e-11  Score=124.76  Aligned_cols=185  Identities=12%  Similarity=0.025  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      ..++.+|..|-..|++++|+.+++++++..|..++.+...|.++.+.|++.+|...++.+..+++.+-.+....+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            35577788888888888888888888888888888888888888888888888888888888888888777788888888


Q ss_pred             cCCHHHHHHHHHHHHhcCC--CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          462 LGESVEAIQDLSKALEFEP--NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      .|+.++|...+......+.  ..       .+.....|.+|.+.|++..|++.|..+.+......+-.+..-..+.+.+-
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t  354 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT  354 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence            8888888888877655442  11       12334568888888888888888888777643322222222222333333


Q ss_pred             HHHHHHHHH--HHHhcCcccHHHHHHHHHHHHHcCC
Q 005808          533 YKKAEEAHL--KAIQLDRNFLEAWGHLTQFYQDLAN  566 (676)
Q Consensus       533 ~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~~~  566 (676)
                      +..=+..++  .-+...|....+......+|+...+
T Consensus       355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d  390 (517)
T PF12569_consen  355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHD  390 (517)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence            222222221  1222345556666666677766544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=2.3e-12  Score=115.12  Aligned_cols=205  Identities=14%  Similarity=0.031  Sum_probs=175.8

Q ss_pred             HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808          393 NEGKYASAISIFDQILKED------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (676)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  466 (676)
                      ...+.++-+++...++...      |+....+-....+....|+.+.|..++.+.....|.+..+....|..+...|+++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence            3456777888887776532      3334555667777788899999999999998888999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 005808          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (676)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (676)
                      +|+++|+..++.+|.+...+.....+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            99999999999999998888888888888999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q 005808          547 DRNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (676)
                      .|.++..+..+|.+++-+|   +..-|.++|.++++++|.+..+++.+-.+...
T Consensus       184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            9999999999999988766   56778999999999999777777766555433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.54  E-value=5.4e-13  Score=122.38  Aligned_cols=126  Identities=21%  Similarity=0.273  Sum_probs=96.3

Q ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH-HHcCC--HHHHHH
Q 005808          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-HGLGQ--HKKAIK  606 (676)
Q Consensus       530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~  606 (676)
                      .++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++...|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            556677777777777777777777777887777778888888888888777777777777777764 56666  477888


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      .++++++.+|+++.++..+|.++...|++++|+.+|++++++.|.+.+-
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            8888888888878888888888888888888888888887777765543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.53  E-value=1.6e-12  Score=117.56  Aligned_cols=176  Identities=20%  Similarity=0.192  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005808          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (676)
Q Consensus       434 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (676)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            444444455556666666 6666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (676)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (676)
                      |++..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666555556666666666


Q ss_pred             HHHHcCCHHHHHHHHHH
Q 005808          594 LLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       594 ~~~~~g~~~~A~~~~~~  610 (676)
                      +....|++.+|.....+
T Consensus       211 ~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         211 VVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhhcCChHHHHhhccc
Confidence            66666666666655443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.52  E-value=6.7e-14  Score=129.62  Aligned_cols=104  Identities=20%  Similarity=0.170  Sum_probs=96.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005808           40 RIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (676)
Q Consensus        40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~  118 (676)
                      +.+++++|.+|.|++||+||+++|...| |+..+.|||.+|++++.|..|..||..|+.+|-.+++||-|+|.+-..+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            5678999999999999999999999996 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHH
Q 005808          119 KEEALSVWEKGYEHALHQSADLKQF  143 (676)
Q Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~~  143 (676)
                      ..+|.+.++.+|++.|+.-+-.+..
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHH
Confidence            9999999999999988864443333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.52  E-value=4.4e-12  Score=137.42  Aligned_cols=231  Identities=15%  Similarity=-0.012  Sum_probs=164.1

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808          368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (676)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (676)
                      +.-..+..-.|....++..++..+...+++++|+.+++..++..|+...+++.+|.+++..+++.++.-.  .++...+.
T Consensus        18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence            3334445667888999999999999999999999999999999999999999999999999987776554  44444333


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (676)
                      +              .++ .++.++...+...+.+..+++.+|.+|-++|++++|...++++++.+|+++.++.++|..+
T Consensus        96 ~--------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~  160 (906)
T PRK14720         96 N--------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY  160 (906)
T ss_pred             c--------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            3              233 3444444444445555666667777777777777777777777777777777777777666


Q ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH--------------------
Q 005808          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------  587 (676)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------  587 (676)
                      ... +.++|+.++.+++..              +...+++..+.+++.+.+..+|.+.+.                    
T Consensus       161 ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~  225 (906)
T PRK14720        161 EEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL  225 (906)
T ss_pred             HHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH
Confidence            666 667777766666654              344455666666666666655554332                    


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (676)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (676)
                      +.-+-..|...++|++++.+++.+++.+|++..+...++.+|.
T Consensus       226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            2333366777788888888888888888888888888888887

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.51  E-value=2.3e-12  Score=116.61  Aligned_cols=183  Identities=17%  Similarity=0.105  Sum_probs=171.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (676)
                      +...+...+-+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA  126 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA  126 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3344667777778889999999 999999999999999999999999999999999988999999999999999999999


Q ss_pred             HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      ....|+++.+|..+|.+|.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+..+..
T Consensus       127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~  206 (257)
T COG5010         127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ  206 (257)
T ss_pred             hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHh
Q 005808          624 LRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      +++.+....|++.+|...-.+-+.
T Consensus       207 NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         207 NLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHHhhcCChHHHHhhcccccc
Confidence            999999999999999988765443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.50  E-value=2.2e-12  Score=118.33  Aligned_cols=124  Identities=17%  Similarity=0.164  Sum_probs=88.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHcCC--HHHHHH
Q 005808          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLAN--SEKALE  572 (676)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~  572 (676)
                      .++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            455667777777777777777777777777777777777777777777777777777777777753 55555  477777


Q ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (676)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (676)
                      .++++++.+|+++.++..+|..+...|++++|+.+++++++..|.+.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            77777777777777777777777777777777777777777666543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.50  E-value=4.1e-12  Score=137.64  Aligned_cols=227  Identities=16%  Similarity=0.068  Sum_probs=194.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005808          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE  488 (676)
Q Consensus       409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  488 (676)
                      ..+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++...+++..+.-+  .++..          
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------   92 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------   92 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh----------
Confidence            357888999999999999999999999999999999999999999999999999886665544  44333          


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q 005808          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (676)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  568 (676)
                          .....++ .+++++...+...+.+..+++.+|.||.++|++++|...|+++++.+|+++.+++++|..|... +.+
T Consensus        93 ----~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         93 ----FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             ----cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence                3334455 5666666677778888889999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH--------------------HHHHHHH
Q 005808          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC--------------------LYLRASC  628 (676)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~~~la~~  628 (676)
                      +|+.++.+++..              +...++|..+.+++.+.+..+|++.+.                    +.-+-..
T Consensus       167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~  232 (906)
T PRK14720        167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP  232 (906)
T ss_pred             HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            999999999866              566678888999999998888886544                    2233478


Q ss_pred             HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      |...++|++++.+++.+++.+|.|..+...++.+|-+.-
T Consensus       233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY  271 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKY  271 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHc
Confidence            888999999999999999999999999999998886543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.49  E-value=4.6e-12  Score=136.62  Aligned_cols=150  Identities=13%  Similarity=-0.026  Sum_probs=106.4

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH
Q 005808          507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK  586 (676)
Q Consensus       507 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  586 (676)
                      .......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...|+++.
T Consensus        76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~  155 (694)
T PRK15179         76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR  155 (694)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence            33344456667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (676)
                      +++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus       156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~  225 (694)
T PRK15179        156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL  225 (694)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence            7777777777777777777777777776777777777777777777777777777777777665554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.49  E-value=6.8e-13  Score=128.73  Aligned_cols=259  Identities=13%  Similarity=0.048  Sum_probs=199.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808          388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (676)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  466 (676)
                      .+.++..|+|..++..++ ....++. .......+.+++..+|+++..+..+..   ..+....+...++..+...++.+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence            456778999999998777 3233332 355678889999999998877655433   22333445556666665555677


Q ss_pred             HHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          467 EAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (676)
Q Consensus       467 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (676)
                      .++..++..+....  .++.+....|.++...|++++|++.+.+.     .+.+.......++...++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777766553332  34556777788999999999999988754     567888888999999999999999999999


Q ss_pred             hcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808          545 QLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (676)
Q Consensus       545 ~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (676)
                      +.+.+..-+....+++....|  ++.+|...|++..+..+..+..+..++.++..+|+|++|...+.+++..+|++++++
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            988887666666666666666  599999999999888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccH-HHHHHHHHHHHhhCCCcHHH
Q 005808          623 YLRASCYHAIGEY-REAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       623 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~  655 (676)
                      .+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            9999999999998 67888999999999998765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=3.3e-10  Score=113.20  Aligned_cols=261  Identities=13%  Similarity=0.031  Sum_probs=165.1

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQ  457 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~  457 (676)
                      .+...+...|..+++.|+|++|+.+|+.+++.+.++.+.............  ..+ . ..+.+...|. ..+.+++.+.
T Consensus       108 ~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac  183 (652)
T KOG2376|consen  108 LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTAC  183 (652)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHH
Confidence            334566677888899999999999999988877666554443322221110  011 1 2333444444 5678889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC-------CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005808          458 ARAALGESVEAIQDLSKALEFE-------PNS--------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (676)
                      ++...|+|.+|++.+++++.+.       ..+        ..+...++.++...|+.++|...|...++.+|.+......
T Consensus       184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av  263 (652)
T KOG2376|consen  184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV  263 (652)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence            9999999999999999985431       111        2256778889999999999999999999988877643332


Q ss_pred             HHHHHHHccc----HH-HHHHHHHHHHhcCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808          523 LGLALSSIGE----YK-KAEEAHLKAIQLDR----------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (676)
Q Consensus       523 la~~~~~~g~----~~-~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  587 (676)
                      ..+-+.....    ++ .++..++......+          ....++.+.+.+.+..+.-+.+.+.....-...|....-
T Consensus       264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~  343 (652)
T KOG2376|consen  264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFP  343 (652)
T ss_pred             HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHH
Confidence            2222211111    11 11112211111111          113445566666666666666666555444444433222


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHhccHHHHHHHHH
Q 005808          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYD  643 (676)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~  643 (676)
                      -........+...+..|.+++....+.+|.+ ..+.+.++.+...+|+++.|+..+.
T Consensus       344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  344 ILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            2233333333347899999999999999987 6788999999999999999999999

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=6.3e-13  Score=127.79  Aligned_cols=122  Identities=21%  Similarity=0.271  Sum_probs=106.3

Q ss_pred             hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc----------------CChhHHHHHHHHHHHhhCHHHHHHHHHHH
Q 005808           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS----------------YEIQDICNRAFCYSQLELHKHVIRDCDKA   95 (676)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~----------------~~~~~~~~ra~~~~~~g~~~~A~~~~~~a   95 (676)
                      +.+-+...|..++.+|+.|+|..|+..|.+|+..=                .-..++.|+|.|+++++.|..|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            55566777788899999999999999999986521                11223789999999999999999999999


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005808           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (676)
Q Consensus        96 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~  153 (676)
                      |+++|+|++|+||+|.+++.+|+++.|+..|++++++.|++.+...+++.+.......
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888887777655443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.47  E-value=8.9e-13  Score=125.22  Aligned_cols=265  Identities=19%  Similarity=0.189  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----C--CCcHHHHH
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQS----N--PSAGEAWK  453 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~~~~~~  453 (676)
                      +-..|.-++..|++...+..|+.+++...++    ..+|..+|.+|+..++|.+|+++-.-=+.+    .  -.....--
T Consensus        20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg   99 (639)
T KOG1130|consen   20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG   99 (639)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence            3355788899999999999999999988776    356788999999999999999876543322    1  12234556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKD--------------------FNAAVEDLS  507 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~  507 (676)
                      ++|..+...|.|++|+-+..+-+.+..      ....+++++|.+|...|+                    ++.|.++|.
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~  179 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM  179 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence            789999999999999999888775532      135689999999987664                    345556665


Q ss_pred             HHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          508 ACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQ  575 (676)
Q Consensus       508 ~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~  575 (676)
                      .-+++....      ..++-++|..|+-+|+|+.|+..-+.-+.+....      ..++.++|.++.-.|+++.|+++|+
T Consensus       180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            555543322      3466778899999999999999988877765443      5688999999999999999999999


Q ss_pred             HHHhcC----c--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808          576 QVLYID----K--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYD  643 (676)
Q Consensus       576 ~al~~~----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~  643 (676)
                      ..+.+.    .  -.+...+.+|..|.-..++++|+.++.+-+.+..      ....+++.||.++-.+|..++|+.+.+
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            886542    2  2356688999999999999999999998776532      235788999999999999999999988


Q ss_pred             HHHhh
Q 005808          644 AALDL  648 (676)
Q Consensus       644 ~al~~  648 (676)
                      +.+++
T Consensus       340 ~hl~~  344 (639)
T KOG1130|consen  340 LHLRS  344 (639)
T ss_pred             HHHHH
Confidence            88764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.45  E-value=4.2e-12  Score=129.64  Aligned_cols=224  Identities=17%  Similarity=0.144  Sum_probs=198.5

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      .-|........+|..++..|-...|+.+|++.        ..|-....||...|+..+|.....+-++ .|.++..|..+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L  463 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL  463 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence            34555667788999999999999999999984        6677788999999999999999998888 67788888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  535 (676)
                      |.+.....-|++|.++.+..      +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.
T Consensus       464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            88887777777777776543      344667778878888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      |.++|..++...|++..+|++++..|...++..+|...+.++++.+-.+..+|-+...+....|.+++|++.+.+.+..
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999888999999999999999999999999998765

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.44  E-value=8.2e-12  Score=127.57  Aligned_cols=224  Identities=17%  Similarity=0.139  Sum_probs=200.2

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (676)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (676)
                      ........++..+...|-...|+..|++.        ..|-....||...|+..+|.....+-++ .|.++..|..+|.+
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV  466 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence            33456678999999999999999999985        4566788999999999999999999988 67788899999888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 005808          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (676)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  572 (676)
                      .....-|++|.++.+..      +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.+
T Consensus       467 ~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence            87777777777766553      344667777778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      +|..++...|++..+|.+++.+|...|+-.+|...++++++.+-++..+|.+.-.+..+.|.+++|++.+.+.+.+..+
T Consensus       541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.44  E-value=3.8e-12  Score=110.46  Aligned_cols=118  Identities=21%  Similarity=0.205  Sum_probs=102.7

Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (676)
                      ..+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      ++..++.+|.++...|++++|+..|+++++++|++...
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            88888888999988999999999999999988888764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=8.1e-10  Score=101.07  Aligned_cols=387  Identities=17%  Similarity=0.179  Sum_probs=261.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808           45 KLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (676)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~  123 (676)
                      ++....+|.+||.+.+.-.+.+| +-...+.+|.||++..+|..|...|+..-.+.|+..+-.+.-+..+.+-+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            34667899999999999999886 66669999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCcC
Q 005808          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (676)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (676)
                      .......+    ++.-+...+++.....--..++                                              
T Consensus        99 rV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl----------------------------------------------  128 (459)
T KOG4340|consen   99 RVAFLLLD----NPALHSRVLQLQAAIKYSEGDL----------------------------------------------  128 (459)
T ss_pred             HHHHHhcC----CHHHHHHHHHHHHHHhcccccC----------------------------------------------
Confidence            88777632    2222222333222111000000                                              


Q ss_pred             CcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCccc
Q 005808          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (676)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (676)
                                               ..                                                     
T Consensus       129 -------------------------~g-----------------------------------------------------  130 (459)
T KOG4340|consen  129 -------------------------PG-----------------------------------------------------  130 (459)
T ss_pred             -------------------------cc-----------------------------------------------------
Confidence                                     00                                                     


Q ss_pred             CCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHH
Q 005808          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK  363 (676)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (676)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (459)
T KOG4340|consen  131 --------------------------------------------------------------------------------  130 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (676)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (676)
                        .+..+..  ......++.....|-..+..|+|+.|++-|+.+++...-++..-++++.++++.|++..|+++....++
T Consensus       131 --~rsLveQ--lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  131 --SRSLVEQ--LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             --hHHHHHh--ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence              0000000  001134667777888899999999999999999999999999999999999999999999998887765


Q ss_pred             h----CCCc-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 005808          444 S----NPSA-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-----SADILHER  489 (676)
Q Consensus       444 ~----~~~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l  489 (676)
                      .    .|..                         .+++...+.++++.|+++.|.+.+..   +.|.     +|..+.++
T Consensus       207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~  283 (459)
T KOG4340|consen  207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQ  283 (459)
T ss_pred             hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHH
Confidence            3    3321                         13555677788899999988876643   3332     35566776


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHH-HH
Q 005808          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFY-QD  563 (676)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~-~~  563 (676)
                      +..-. .+++.+...-+.-.+.++|-..+.+.++-.+|.+..-++-|...+-+    +|+.     ....+.+-..+ ..
T Consensus       284 Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~  358 (459)
T KOG4340|consen  284 ALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITC  358 (459)
T ss_pred             HHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhC
Confidence            65443 45677777888888889998888888999999988888877766543    3432     12223333322 23


Q ss_pred             cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005808          564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK  640 (676)
Q Consensus       564 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  640 (676)
                      .-..++|.+-+...-....+...........-...+   ....|++.|+.+++..   ..+....+++|+...+|..+.+
T Consensus       359 qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk  435 (459)
T KOG4340|consen  359 QTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEK  435 (459)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHH
Confidence            445666665555443221111000000001111111   1234555566665543   3467788999999999999999


Q ss_pred             HHHHHHhhCCCcHH
Q 005808          641 DYDAALDLELDSME  654 (676)
Q Consensus       641 ~~~~al~~~p~~~~  654 (676)
                      .|+...+...++..
T Consensus       436 ~Fr~SvefC~ehd~  449 (459)
T KOG4340|consen  436 IFRKSVEFCNDHDV  449 (459)
T ss_pred             HHHHHHhhhcccce
Confidence            99999988766543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=2.3e-09  Score=102.78  Aligned_cols=230  Identities=17%  Similarity=0.091  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-H-------HH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-E-------AW  452 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~-------~~  452 (676)
                      ....+.++......|++..|..-..++++..|.++.++.....+|...|++.....++.+..+..--+. +       ++
T Consensus       153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~  232 (400)
T COG3071         153 LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW  232 (400)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence            345667788899999999999999999999999999999999999999999999999888776543221 1       11


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      ..+-.-....+..+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. ....+  -....++
T Consensus       233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d  309 (400)
T COG3071         233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGD  309 (400)
T ss_pred             HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCC
Confidence            11111111122222222334333333335678888999999999999999999999998865543 22222  2345688


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      ...-++..++.++..|+++..+..+|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|...++.++
T Consensus       310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999988875 6778999999999999999999999988


Q ss_pred             cC
Q 005808          613 GI  614 (676)
Q Consensus       613 ~~  614 (676)
                      ..
T Consensus       389 ~~  390 (400)
T COG3071         389 LL  390 (400)
T ss_pred             HH
Confidence            43

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.40  E-value=2.1e-11  Score=131.56  Aligned_cols=154  Identities=10%  Similarity=-0.014  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (676)
Q Consensus       399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  478 (676)
                      +++.-+.......|.+++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            33334444445677778888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH
Q 005808          479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (676)
Q Consensus       479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  552 (676)
                      .|+++..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+.++|...|+++++....-..
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~  223 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR  223 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence            88888888888888888888888888888888877777888888888888888888888888888776544333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.40  E-value=6e-12  Score=127.03  Aligned_cols=112  Identities=23%  Similarity=0.254  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005808           39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (676)
Q Consensus        39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~  117 (676)
                      -+.++..+|..|+|++|+.+|.++|+++ .+...|++||.||+++|++++|+.++++|+.++|+++.+|+++|.+|..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            3456788999999999999999999999 666779999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 005808          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (676)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~  150 (676)
                      ++++|+..|++++.++|+++.....+..+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988877765554444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.40  E-value=2.1e-09  Score=124.90  Aligned_cols=269  Identities=17%  Similarity=0.053  Sum_probs=191.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHH
Q 005808          386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR  454 (676)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~  454 (676)
                      .+|..+...|++++|...+++++...+..     ..+...+|.++...|++++|...+.+++......      ..++..
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            45677778899999999999888754432     2345677888888999999999998888653321      235567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYT  521 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~  521 (676)
                      +|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++.....     ....+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            788888999999999998888765211        1234556788888889999999998888765321     234556


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH----HHHHH
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAW----GHLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHL  590 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~  590 (676)
                      .++.++...|++++|...+.++....+..   ....    ......+...|+.+.|..++.......+...    ..+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            67888889999999999888887653321   1111    1122444557888888888777654322222    12457


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          591 RGLLLHGLGQHKKAIKDLSSGLGID------PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      ++.++...|++++|...+++++...      .....++..+|.++...|+.++|...+.+++++......
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            8888899999999999999887652      122457788899999999999999999999987755433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=4.2e-10  Score=105.27  Aligned_cols=274  Identities=14%  Similarity=0.093  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      ...+..|.|++..|+|++|+..|+-+...+.-+.+.+.++|.+++..|.|.+|.....+    .|+.+-....+-.+..+
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH
Confidence            34445555666666666666666655554444455556666666666666655544433    24444333333344444


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (676)
                      .++-++-... ..-++   +..+-...++.+.+..-.|++|++.|++++..+|+....-..++.||.++.-++-+.+.+.
T Consensus       134 lndEk~~~~f-h~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  134 LNDEKRILTF-HSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             hCcHHHHHHH-HHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence            4443332222 22111   1123334455555555566666666666666666665555666666666666666666666


Q ss_pred             HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (676)
Q Consensus       542 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (676)
                      -.++..|+++-+....+...++.=+-..|..-....... +...+.+-...-.-+.--.+-+.|++.+--.++.   -|+
T Consensus       210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPE  286 (557)
T KOG3785|consen  210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPE  286 (557)
T ss_pred             HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChH
Confidence            666666666666655555555443333333333333221 1111111110000000011223344443333333   246


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808          621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD  669 (676)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  669 (676)
                      +..++...|..+|+..+|....+   +++|..|.-|...++++.....+
T Consensus       287 ARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe  332 (557)
T KOG3785|consen  287 ARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE  332 (557)
T ss_pred             hhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence            77888888888888888876653   56788888887777777655443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.38  E-value=1.6e-11  Score=106.48  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=70.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (676)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  482 (676)
                      .+++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45555556666555566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  518 (676)
                      +..++.+|.++...|++++|+..++++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666666666666666555543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=1.1e-10  Score=106.77  Aligned_cols=185  Identities=15%  Similarity=0.127  Sum_probs=94.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (676)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (676)
                      ....+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+.+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            34455666666666555556655555566666666666666666666666666665555555555556666666666555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Q 005808          472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (676)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  551 (676)
                      ...+.....-...++..-+-+.+..+++..+....++.-  ..+........|.+.++.|+++.|++-|+.+++...-.+
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp  178 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP  178 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence            544433211112233333444444444444444333211  013334444455555555555555555555555544444


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          552 EAWGHLTQFYQDLANSEKALECLQQVL  578 (676)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al  578 (676)
                      ..-++++.++++.+++..|+++..+.+
T Consensus       179 llAYniALaHy~~~qyasALk~iSEIi  205 (459)
T KOG4340|consen  179 LLAYNLALAHYSSRQYASALKHISEII  205 (459)
T ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            455555555555555555555444443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.1e-12  Score=115.85  Aligned_cols=101  Identities=26%  Similarity=0.325  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005808           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (676)
Q Consensus        35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  113 (676)
                      ++..-..+++++|..+.|+.||.+|++||-++|+. .+|-|||.||+++.+|+.+..+|++|++++|+.+++++.+|.+.
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            33444467899999999999999999999999777 55789999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhccC
Q 005808          114 SALGRKEEALSVWEKGYEHALH  135 (676)
Q Consensus       114 ~~l~~~~~A~~~~~~al~~~~~  135 (676)
                      +....+++|+..+++|.++..+
T Consensus        89 l~s~~~~eaI~~Lqra~sl~r~  110 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLLRE  110 (284)
T ss_pred             HhhccccHHHHHHHHHHHHHhc
Confidence            9999999999999999766543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.37  E-value=2.2e-11  Score=103.15  Aligned_cols=95  Identities=14%  Similarity=0.079  Sum_probs=88.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005808           44 AKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA  122 (676)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A  122 (676)
                      ..++..|+|++|...|.-...++ .++..|.|+|.|+-.+|+|.+|+..|.+|+.++|+++.+++..|.|++.+|+.+.|
T Consensus        43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A  122 (157)
T PRK15363         43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA  122 (157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence            35789999999999999999999 77777999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCChH
Q 005808          123 LSVWEKGYEHALHQSA  138 (676)
Q Consensus       123 ~~~~~~al~~~~~~~~  138 (676)
                      .++|+.|+..+-+.|.
T Consensus       123 ~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        123 IKALKAVVRICGEVSE  138 (157)
T ss_pred             HHHHHHHHHHhccChh
Confidence            9999999988744443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.36  E-value=1.3e-11  Score=117.35  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEF----EPN--S  482 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~  482 (676)
                      ..++-.+|..|+..|+|+.|+..-+.-+.+....      ..++.++|.++.-+|+++.|+++|++.+.+    ...  .
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            4677888999999999999998888777664433      347888999999999999999999887643    222  2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------c
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------F  550 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~  550 (676)
                      ....+.+|..|.-..++++|+.++.+-+.+..      ....+++.+|..+...|..++|+.+.+..++....      .
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sge  354 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGE  354 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchh
Confidence            44677889999999999999999888776532      23567888999999999999998888777665321      1


Q ss_pred             HHHHHHHHHHHHHcCCHHH
Q 005808          551 LEAWGHLTQFYQDLANSEK  569 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~  569 (676)
                      ..+..++...-...|..+.
T Consensus       355 lTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  355 LTARDNLSDLILELGQEDS  373 (639)
T ss_pred             hhhhhhhHHHHHHhCCCcc
Confidence            3344455555555555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=1.4e-11  Score=113.70  Aligned_cols=120  Identities=25%  Similarity=0.343  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ++.+-..|.-++..++|.+|+..|.++|+++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|.++|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            45666779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (676)
                      .+|++++|++.|++++.++|++...+..+..+-...+...
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999988777776666555544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=8e-12  Score=115.89  Aligned_cols=103  Identities=24%  Similarity=0.241  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-C----ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 005808           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-Y----EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK  109 (676)
Q Consensus        35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~----~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~  109 (676)
                      .|.+-+.+++.+|+.++|..|+.+|+++|... +    |...|.|||+|.+.+|||..|+.||.+|+.++|+++++++|=
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            56777899999999999999999999999876 3    334499999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 005808          110 GCAFSALGRKEEALSVWEKGYEHALHQS  137 (676)
Q Consensus       110 g~~~~~l~~~~~A~~~~~~al~~~~~~~  137 (676)
                      +.|++.+.++++|+...+..+.++-+..
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999999999999999988876654433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.31  E-value=1e-09  Score=108.06  Aligned_cols=153  Identities=20%  Similarity=0.164  Sum_probs=117.3

Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (676)
Q Consensus       412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (676)
                      |....+++..+..++..|++++|+..+...+...|+++..+...+.++...++..+|.+.+++++..+|..+.++.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            66677778888888888888888888888888888888777778888888888888888888888888877777788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (676)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  571 (676)
                      .++..|++.+|+..+...+..+|+++..|..++..|..+|+..++...+                 +..|...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence            8888888888888888888778888888888888887777766655443                 34455577777777


Q ss_pred             HHHHHHHhcC
Q 005808          572 ECLQQVLYID  581 (676)
Q Consensus       572 ~~~~~al~~~  581 (676)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            7777776654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.30  E-value=1.2e-10  Score=98.62  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=91.7

Q ss_pred             HHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 005808          543 AIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (676)
Q Consensus       543 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (676)
                      ...+. ++..+..+.+|..+...|++++|...|+.+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34455 66777788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          622 LYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ++++|.|++..|+.+.|.+.|+.++....+.
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            8888888888888888888888888876443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.29  E-value=2.5e-07  Score=93.81  Aligned_cols=268  Identities=13%  Similarity=0.174  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH-----HHHHHHHHHcc-------------cHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEAL-----IGRGTARAFQR-------------ELEAAISDFT  439 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~-----~~la~~~~~~g-------------~~~~A~~~~~  439 (676)
                      ...+..+|..|.+.|.+++|..+|++++..--.   ...++     +.-..+...++             +.+-.+..|+
T Consensus       248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e  327 (835)
T KOG2047|consen  248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE  327 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence            457789999999999999999999999875321   11111     11111111111             2233444455


Q ss_pred             HHH------------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHhcCCHHH
Q 005808          440 EAI------------QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE-FEPNS-----ADILHERGIVNFKFKDFNA  501 (676)
Q Consensus       440 ~al------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~~~~~~  501 (676)
                      ..+            ..+|++..-|....  -+..|+..+-+..|..++. .+|..     ...|..+|..|...|+.+.
T Consensus       328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence            443            34666666665544  4456888888888888875 35533     4588999999999999999


Q ss_pred             HHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------------cHHHHHHHHH
Q 005808          502 AVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------------------FLEAWGHLTQ  559 (676)
Q Consensus       502 A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~  559 (676)
                      |...|+++.+..-..    ..+|...|..-....+++.|+.+++.+...-..                  +..+|..++.
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            999999998875332    467888888888899999999999988754211                  2456777888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCHHHHHHHHHHH---HHhcc
Q 005808          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCY---HAIGE  634 (676)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~---~~~g~  634 (676)
                      .....|-++.....|++++.+.--.|....+.|..+....-++++.+.|++.+.+.+  .-.++|...-.-+   +.-..
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k  565 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK  565 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence            888889999999999999998888889999999999999999999999999998864  3345554433322   22236


Q ss_pred             HHHHHHHHHHHHhhCC
Q 005808          635 YREAIKDYDAALDLEL  650 (676)
Q Consensus       635 ~~~A~~~~~~al~~~p  650 (676)
                      .+.|...|++|++..|
T Consensus       566 lEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  566 LERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            7899999999999888

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.29  E-value=1.4e-09  Score=107.17  Aligned_cols=153  Identities=20%  Similarity=0.174  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (676)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  559 (676)
                      |....+++..+..++..|+++.|+..+...+...|+|+..+...+.++...++..+|.+.+++++...|..+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (676)
                      ++++.|++.+|+..+...+..+|+++..|..+|..|..+|+..+|.                 ...++.|.-.|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHH
Confidence            6666666666666666666666666666666666666666544333                 33445555566666666


Q ss_pred             HHHHHHHhhC
Q 005808          640 KDYDAALDLE  649 (676)
Q Consensus       640 ~~~~~al~~~  649 (676)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            6666666554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.28  E-value=5.9e-11  Score=115.26  Aligned_cols=234  Identities=16%  Similarity=0.073  Sum_probs=179.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRGQ  457 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~  457 (676)
                      ..+..+...++++.+|+++..+.-+..   ..+....+...++..+...++-+.++..++..+....  .++.+....|.
T Consensus        34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~  110 (290)
T PF04733_consen   34 KLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT  110 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            455677888899999998877655433   2233355666666666554566667766665543322  34556666778


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--cHHH
Q 005808          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYKK  535 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~  535 (676)
                      ++...|++++|++.+.+.     .+.+.......++...++++.|.+.++.+.+.+.+..-....-+++....|  .+.+
T Consensus       111 i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~  185 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQD  185 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred             HHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHH
Confidence            888899999999988654     567888889999999999999999999998888877766666777777766  5899


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH-HHHHHHHHHhhcC
Q 005808          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLGI  614 (676)
Q Consensus       536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  614 (676)
                      |...|++..+..+..+..+..++.+++.+|++++|...+.+++..+|.++.++.+++.+....|+. +.+.+++.+....
T Consensus       186 A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  186 AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            999999998888888999999999999999999999999999999999999999999999999988 6677788888888


Q ss_pred             CCCCHHH
Q 005808          615 DPSNIEC  621 (676)
Q Consensus       615 ~p~~~~~  621 (676)
                      +|+++.+
T Consensus       266 ~p~h~~~  272 (290)
T PF04733_consen  266 NPNHPLV  272 (290)
T ss_dssp             TTTSHHH
T ss_pred             CCCChHH
Confidence            9987654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.21  E-value=4.2e-06  Score=85.24  Aligned_cols=97  Identities=18%  Similarity=0.026  Sum_probs=57.1

Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCCh--------hHHHHHHHHHHH---hh---CHHHHHHHHHHH
Q 005808           30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI--------QDICNRAFCYSQ---LE---LHKHVIRDCDKA   95 (676)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~--------~~~~~ra~~~~~---~g---~~~~A~~~~~~a   95 (676)
                      ..+.|.+.++=+  .-+...+++++|...|...+..+.+.        ..+...-....+   .+   +++.-   .+.-
T Consensus       165 Lk~~P~~~eeyi--e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai---iR~g  239 (835)
T KOG2047|consen  165 LKVAPEAREEYI--EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI---IRGG  239 (835)
T ss_pred             HhcCHHHHHHHH--HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH---HHhh
Confidence            355565533333  22357888999999888887654222        222222111111   11   22221   2233


Q ss_pred             HHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808           96 LQLDPT-LLQAYILKGCAFSALGRKEEALSVWEKGYE  131 (676)
Q Consensus        96 l~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  131 (676)
                      +..-|+ ....++.++.-|...|.++.|.+.|++++.
T Consensus       240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~  276 (835)
T KOG2047|consen  240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ  276 (835)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            333343 456889999999999999999999999963

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.21  E-value=5.4e-09  Score=99.15  Aligned_cols=181  Identities=17%  Similarity=0.127  Sum_probs=128.6

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~  452 (676)
                      .++..++..|..++..|+|++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            467888899999999999999999999999999988654   4889999999999999999999999998877   5578


Q ss_pred             HHHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005808          453 KRRGQARAALGE------------------SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (676)
Q Consensus       453 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  514 (676)
                      +.+|.++...+.                  ..+|+..|++.++..|+..-+              .+|...+..+-.   
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence            888877644431                  246778888888888876432              111111111100   


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQ  576 (676)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~  576 (676)
                      .-..--+.+|..|.+.|.|..|+.-++.+++..|+.   .+++..++..|...|..++|......
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            001122346677777777777777777777776654   56677777777777777777665544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.20  E-value=2.4e-09  Score=99.29  Aligned_cols=175  Identities=21%  Similarity=0.223  Sum_probs=112.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~  452 (676)
                      .++..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|+++.|+..+++.+...|++   ..++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            347889999999999999999999999999988876   6789999999999999999999999999999886   4578


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808          453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (676)
Q Consensus       453 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (676)
                      +.+|.+++...           ...+|+..|+..+...|++..+-              +|...+..+-.   .-..--+
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~  145 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHEL  145 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHH
Confidence            88888766542           23467777777777777653321              11111110000   0011123


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHH
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA  570 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A  570 (676)
                      .+|..|.+.|.+..|+..++.+++..|+.   ..++..++.+|...|..+.|
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            35566666666666666666666665554   34555666666666665533

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.20  E-value=3.8e-11  Score=93.89  Aligned_cols=80  Identities=30%  Similarity=0.352  Sum_probs=72.7

Q ss_pred             cCCHHHHHHHHHHHHcccC---ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005808           49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (676)
Q Consensus        49 ~~~y~~Ai~~y~~ai~~~~---~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~  125 (676)
                      +|+|+.|+.+|.++++..|   +...++++|.|++++|+|++|+..+++ +..+|.++..++.+|.++.++|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6899999999999999986   355678899999999999999999999 999999999999999999999999999999


Q ss_pred             HHHH
Q 005808          126 WEKG  129 (676)
Q Consensus       126 ~~~a  129 (676)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.20  E-value=7e-11  Score=88.58  Aligned_cols=67  Identities=30%  Similarity=0.335  Sum_probs=62.9

Q ss_pred             ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 005808           68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL  134 (676)
Q Consensus        68 ~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~-~~~~A~~~~~~al~~~~  134 (676)
                      ++..|.++|.+++.+|+|++|+..|++|++++|+++.+++.+|.+|..+| ++++|+..|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            56779999999999999999999999999999999999999999999999 79999999999977665

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.20  E-value=2.3e-08  Score=116.35  Aligned_cols=285  Identities=15%  Similarity=0.061  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---  448 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  448 (676)
                      +......+..+...|++++|...+..+....+.         .......+|.++...|++++|...+++++...+..   
T Consensus       409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (903)
T PRK04841        409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY  488 (903)
T ss_pred             cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence            445567788888999999999999988664221         13445567888899999999999999998854443   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----
Q 005808          449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----  515 (676)
Q Consensus       449 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----  515 (676)
                        ..+...+|.++...|++++|...+.+++......      ..++..+|.++...|+++.|...+++++.....     
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  568 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ  568 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence              2355678888999999999999999998653321      235677899999999999999999998875221     


Q ss_pred             ---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---
Q 005808          516 ---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---  584 (676)
Q Consensus       516 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---  584 (676)
                         ....+..+|.++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++....+..   
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence               1234557788999999999999999998875321     24556678899999999999999999987653321   


Q ss_pred             HHHH----HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-----
Q 005808          585 SKAY----HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELD-----  651 (676)
Q Consensus       585 ~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----  651 (676)
                      ....    ......+...|+.+.|..++.......+...    ..+..++.++...|++++|...+++++.....     
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~  728 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS  728 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence            1111    1123445568899999999887765433222    22567899999999999999999999886322     


Q ss_pred             -cHHHHHHHHHHHHH
Q 005808          652 -SMEKFVLQCLAFYQ  665 (676)
Q Consensus       652 -~~~~~~~~~~~~~~  665 (676)
                       ...++..++.++..
T Consensus       729 ~~a~~~~~la~a~~~  743 (903)
T PRK04841        729 DLNRNLILLNQLYWQ  743 (903)
T ss_pred             HHHHHHHHHHHHHHH
Confidence             12344455555543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.17  E-value=3.1e-11  Score=118.57  Aligned_cols=118  Identities=23%  Similarity=0.265  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  114 (676)
                      +..-.-++..+|..+.|+.|+..|++||+++| +..++.|||.++++.++|..|+.|+.+||+++|.+.++|+|+|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            34445688899999999999999999999995 55568999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005808          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (676)
Q Consensus       115 ~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~  153 (676)
                      +++++-+|+..|++...+.|+.+...+.+.+.+-....-
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE  122 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888888766553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.17  E-value=6.7e-10  Score=112.24  Aligned_cols=114  Identities=22%  Similarity=0.269  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      -+...|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|++..+++.+|.++..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            36677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005808          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (676)
                      |++++|+..|++++.++|+++.+...++.+....
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999888887775554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.14  E-value=1e-08  Score=97.23  Aligned_cols=182  Identities=15%  Similarity=0.052  Sum_probs=129.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAY  520 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~  520 (676)
                      ..+..++..|..+...|++++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++..|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            356667778888888888888888888888888877554   47788888888888888888888888877763   567


Q ss_pred             HHHHHHHHHccc------------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808          521 TYLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (676)
Q Consensus       521 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  582 (676)
                      +.+|.++...+.                  ..+|+..|++.++..|+...+              .+|...+..+.   .
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---D  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---H
Confidence            777777644431                  245667777777777765321              12222111111   0


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                      .-..--+..|..|.+.|.|..|+.-++.+++..|+.   .+++..++.+|..+|..++|.......
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            112224467888999999999999999999888875   478889999999999999998876543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.13  E-value=5.3e-09  Score=96.99  Aligned_cols=175  Identities=23%  Similarity=0.174  Sum_probs=115.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT  521 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~  521 (676)
                      ....++..|..++..|++.+|+..|++++...|..   +.+.+.+|.+++..|+++.|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            35677788888888888888888888888877765   56778888888888888888888888888887764   5677


Q ss_pred             HHHHHHHHccc-----------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHH
Q 005808          522 YLGLALSSIGE-----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (676)
Q Consensus       522 ~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  590 (676)
                      .+|.++.....           ..+|+..|+..+...|++..+              .+|...+..+-+   .-..--+.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~  146 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELY  146 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHH
Confidence            77777665432           235566666666666654221              122222111110   01223455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhccHHHHH
Q 005808          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~  639 (676)
                      +|..|.+.|.|..|+..++.+++..|+.+   +++..++.+|.++|..+.|.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            78888899999999999999999888865   67888888999998887543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.07  E-value=8.1e-07  Score=85.53  Aligned_cols=223  Identities=32%  Similarity=0.408  Sum_probs=126.8

Q ss_pred             ccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005808          429 RELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVE  504 (676)
Q Consensus       429 g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (676)
                      +.+..+...+...+...+.  ........+..+...+.+..+...+.....  ..+.....+...+..+...+++..++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444444444444444443  244444555555555555555555555554  344445555555555555555555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHH-HHHHcccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          505 DLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (676)
Q Consensus       505 ~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (676)
                      .+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            555555554444333333333 55566666666666666655444   23444444444455666666666666666666


Q ss_pred             CcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          581 DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       581 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .+. ....+..++..+...+++..|...+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            666 46666666666666666666666666666666665555666666666555667777777777766665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.06  E-value=5.5e-09  Score=88.28  Aligned_cols=105  Identities=24%  Similarity=0.322  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR  454 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~  454 (676)
                      ++.++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+..|++++..+|++   ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4567777778888888888888888887777665   4677777888888888888888888777777664   556777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPNSADI  485 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  485 (676)
                      +|.++...|++++|+.++++++...|++..+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            7777777777777777777777777776554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.05  E-value=6.2e-08  Score=106.11  Aligned_cols=212  Identities=13%  Similarity=0.047  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQDLSKA  475 (676)
Q Consensus       401 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (676)
                      .+.|.+.+..+|+....|......+...++.++|.+.+++++.. ++..    ..+|..+-.+...-|.-+.-.+.|++|
T Consensus      1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence            34444444445555555554444445555555555555555432 2211    123333333333334444444444444


Q ss_pred             HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHH
Q 005808          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEA  553 (676)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~  553 (676)
                      .+... ...++..|..+|...+++++|.++++.+++.......+|..++..++.+++-+.|...+.+|++.-|.  +...
T Consensus      1524 cqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1524 CQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred             HHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence            44331 22344444445555555555555555555444444445555555555555445555555555554444  3444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (676)
                      ....|.+.++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+-+...|++++.
T Consensus      1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            444444445555555555555555555554444555544444555555555555555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.04  E-value=1.5e-06  Score=83.60  Aligned_cols=224  Identities=29%  Similarity=0.351  Sum_probs=195.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005808          394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI  469 (676)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~  469 (676)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            57788888888888887776  378888899999999999999999999987  67888889999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808          470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (676)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (676)
                      ..+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999999988777555556666 89999999999999999988766   3456666677778889999999999999999


Q ss_pred             cCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808          546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       546 ~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (676)
                      ..+. ....+..++..+...+++..|...+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999 68999999999999999999999999999999987777888888888778899999999999999887

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.04  E-value=5.3e-09  Score=88.38  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYL  624 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  624 (676)
                      +..++.+|..+...|++++|+..|.+++...|++   +.+++.+|.++...|++++|+..|+.++...|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3566777888888888888888888888777765   4677788888888888888888888888877764   567888


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          625 RASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       625 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      +|.++..+|++++|..+++++++..|++..+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            8888888888888888888888888887654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=3.7e-07  Score=83.02  Aligned_cols=258  Identities=15%  Similarity=0.037  Sum_probs=192.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (676)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  466 (676)
                      -.+.++..|+|..++..-.+.-.. +....-...+.+.|..+|++...+......-   .....+...++.+...-++.+
T Consensus        14 ~iRn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~   89 (299)
T KOG3081|consen   14 NIRNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK   89 (299)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence            345677789999998887766443 3667788888999999998876655443321   222344555566555556666


Q ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          467 EAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (676)
Q Consensus       467 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (676)
                      .-+..+.+.+...  ..+......-|.++...|++++|++.....     .+.++...-..++.++.+.+-|...++++.
T Consensus        90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq  164 (299)
T KOG3081|consen   90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQ  164 (299)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555554444322  223345666788899999999999988763     445666666788899999999999999999


Q ss_pred             hcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808          545 QLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (676)
Q Consensus       545 ~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (676)
                      +++.+.  .+..+|..+..    .+++.+|.-+|+..-+..|..+.....++.++..+|+|++|...++.++..++++++
T Consensus       165 ~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe  242 (299)
T KOG3081|consen  165 QIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE  242 (299)
T ss_pred             ccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence            886553  34444444433    456889999999999888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccHHHH-HHHHHHHHhhCCCcHHH
Q 005808          621 CLYLRASCYHAIGEYREA-IKDYDAALDLELDSMEK  655 (676)
Q Consensus       621 ~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~  655 (676)
                      .+.++..+-...|...++ .+++.+.....|+++-.
T Consensus       243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            999999999999987665 45667777778887654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=6.4e-09  Score=92.60  Aligned_cols=107  Identities=19%  Similarity=0.173  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHc------------------cc-CChhHHHHHHHHHHHhhCHHHHHHHHH
Q 005808           33 MASAITARIELAKLCSLRNWSKAIRILDSLLA------------------QS-YEIQDICNRAFCYSQLELHKHVIRDCD   93 (676)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~------------------~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~   93 (676)
                      |-....-|.+++++|..|+|.+|+.+|..||-                  ++ .....+.|.+.|++..|+|-+++..|.
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            33334556889999999999999999999953                  22 333447899999999999999999999


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 005808           94 KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (676)
Q Consensus        94 ~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~  139 (676)
                      ..|..+|++++|||++|.++..-=+.++|...|.++|+++|.-...
T Consensus       255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999999999998888765544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.01  E-value=5e-08  Score=85.45  Aligned_cols=199  Identities=19%  Similarity=0.145  Sum_probs=142.1

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      ...+..++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+++.|.+.|...++++|...-++.+.|.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            34467888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      .++.-|++.-|.+.+.+..+.+|++|---..+- +-...-++.+|...+.+-.+...+....|...+.   .+|+..+ .
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS~-e  216 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKISE-E  216 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhccH-H
Confidence            999999999999999999999998874211111 1122336677766555433333222222322221   2222211 1


Q ss_pred             HHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808          538 EAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (676)
Q Consensus       538 ~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (676)
                      ..++++.....++       .++++.+|..+...|+.++|...|+-++..+
T Consensus       217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            2233333322222       5677888888888888888888888777554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=9.8e-09  Score=95.99  Aligned_cols=119  Identities=24%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 005808          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSS  610 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~  610 (676)
                      +..+.-++.-+..+|++.+.|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.++....   ...++...+++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            333444455555566666666666666666666666666666666666666666666655554432   33455666666


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ++..+|+++.+.+.||..++..|+|.+|...++..++..|.+
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            666666666666666666666666666666666666655544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.00  E-value=1.6e-09  Score=81.09  Aligned_cols=67  Identities=30%  Similarity=0.530  Sum_probs=57.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCC
Q 005808          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLEL  650 (676)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  650 (676)
                      ++..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46778888888888888888888888888888888888888888888888 78888888888888887

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.99  E-value=1.6e-09  Score=80.00  Aligned_cols=65  Identities=26%  Similarity=0.281  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 005808           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (676)
Q Consensus        73 ~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~  137 (676)
                      +.+|..+++.|+|++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36789999999999999999999999999999999999999999999999999999988888754

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.99  E-value=2.9e-07  Score=101.03  Aligned_cols=234  Identities=13%  Similarity=0.102  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 005808          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSA----DILHERGIVNFKFKDFNAAVED  505 (676)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~----~~~~~la~~~~~~~~~~~A~~~  505 (676)
                      -.+..+.|++.+..+|+..-.|..+.......++.++|.+.+++++.. ++...    .+|..+-.+...-|.-+.-.+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            344567788888999999999999999999999999999999999864 44332    3555555555666777778888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--
Q 005808          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--  583 (676)
Q Consensus       506 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--  583 (676)
                      |+++.+... ...++..|..+|...+++++|.++|+.+++...+...+|..++..++++++-+.|...+.+|++.-|.  
T Consensus      1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            888887643 35678888999999999999999999999988888999999999999999999999999999998886  


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Q 005808          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL--ELDSMEKFVLQCL  661 (676)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~  661 (676)
                      +.......|.+-++.|+.+.+...|+-.+..+|...+.|..+...-.+.|+.+.+...|++++.+  .|.....++...+
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence            67888888999999999999999999999999999999999999999999999999999999875  4555555666555


Q ss_pred             HHHH
Q 005808          662 AFYQ  665 (676)
Q Consensus       662 ~~~~  665 (676)
                      .|-.
T Consensus      1679 eyEk 1682 (1710)
T KOG1070|consen 1679 EYEK 1682 (1710)
T ss_pred             HHHH
Confidence            5543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.99  E-value=3.4e-08  Score=86.31  Aligned_cols=128  Identities=18%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR  455 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l  455 (676)
                      ...+..+...+..++...+...++.++..+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   ..+.+.+
T Consensus        12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344555555567888888888888888888887   5567778888888888888888888888876554   3467778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (676)
                      +.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus        92 A~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            8888888888888888865 33344456677778888888888888888887763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.1e-08  Score=93.86  Aligned_cols=119  Identities=26%  Similarity=0.311  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005808          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSA  508 (676)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~  508 (676)
                      +..+.-++.-+..+|++.+.|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++...   ...++...+++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            334444455555555555555555555555555555555555555555555555555555544332   23455555555


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (676)
Q Consensus       509 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  550 (676)
                      ++..+|.+..+.+.+|..++..|+|.+|...++..++..|.+
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            555555555555555555555555555555555555554443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.98  E-value=7.6e-08  Score=84.34  Aligned_cols=196  Identities=18%  Similarity=0.183  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (676)
                      +..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            55677788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  574 (676)
                      --|++.-|.+.+.+..+.+|+++.--..+-.. ...-+..+|..-+.+-.+...+.-..|...+. |  .|+..+ ...+
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~-y--LgkiS~-e~l~  219 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF-Y--LGKISE-ETLM  219 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH-H--HhhccH-HHHH
Confidence            99999999999999999999987433222222 22335666665544433322222222222221 1  232211 1223


Q ss_pred             HHHHhcCcCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808          575 QQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (676)
Q Consensus       575 ~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (676)
                      +++.....++       .++++.+|..+...|+.++|...|+-++..+
T Consensus       220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            3333222222       4578888999999999999999988888754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.98  E-value=8.9e-09  Score=82.90  Aligned_cols=99  Identities=29%  Similarity=0.489  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (676)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            45667777777788888888888887777777777777888888888888888888888887777777788888888888


Q ss_pred             ccHHHHHHHHHHHHhhCCC
Q 005808          633 GEYREAIKDYDAALDLELD  651 (676)
Q Consensus       633 g~~~~A~~~~~~al~~~p~  651 (676)
                      |++++|..++.++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            8888888888888777663

>PRK11906 transcriptional regulator; Provisional

Probab=98.98  E-value=5.2e-08  Score=96.92  Aligned_cols=161  Identities=12%  Similarity=0.086  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCC
Q 005808          383 FRLSRGIAQVNEGK---YASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS  447 (676)
Q Consensus       383 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~  447 (676)
                      .++.+|...+..+.   .+.|+.+|.+++   ..+|..+.++..++.|++..         ....+|....+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            45788888776654   567888999999   88999999999999888764         2355678888888888888


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-  526 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-  526 (676)
                      ++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....+-...-.+ 
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~  416 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD  416 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888765544433333 


Q ss_pred             HHHcccHHHHHHHHHHH
Q 005808          527 LSSIGEYKKAEEAHLKA  543 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~a  543 (676)
                      .+-....++|+..|-+-
T Consensus       417 ~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        417 MYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HHcCCchhhhHHHHhhc
Confidence            44445566777666543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.97  E-value=2e-08  Score=80.25  Aligned_cols=106  Identities=19%  Similarity=0.256  Sum_probs=93.8

Q ss_pred             HHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHH
Q 005808           46 LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILKGCAFSALGRKE  120 (676)
Q Consensus        46 ~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~~g~~~~~l~~~~  120 (676)
                      +-..|+.+.|++.|.++|.+. .++..|.|||.++.-+|+-++|+.++++|+++...-..    +|+.+|.+|..+|+-+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            456899999999999999999 77888999999999999999999999999999866444    9999999999999999


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005808          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (676)
Q Consensus       121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~  153 (676)
                      .|...|+.|-.+.  .+.+..++++++|--..+
T Consensus       133 ~AR~DFe~AA~LG--S~FAr~QLV~lNPYAAlC  163 (175)
T KOG4555|consen  133 AARADFEAAAQLG--SKFAREQLVELNPYAALC  163 (175)
T ss_pred             HHHHhHHHHHHhC--CHHHHHHHHhcChHHHHH
Confidence            9999999997664  556788889999875543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.97  E-value=2.6e-08  Score=104.81  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHH
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~  602 (676)
                      ...|+.+|+++++.+|++..++-.++.++...        .+...+.....+++..  .+.++.++..+|..+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            45556666666666666655555555544332        1234555555565553  6667788888888888889999


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                      +|...+++++.++|+ ..+|..+|.++...|++++|+..|++|+.++|.++..+..-.++++-
T Consensus       438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~~  499 (517)
T PRK10153        438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVFQT  499 (517)
T ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccccc
Confidence            999999999999984 78899999999999999999999999999999988755544444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.96  E-value=2.7e-08  Score=97.65  Aligned_cols=194  Identities=21%  Similarity=0.169  Sum_probs=122.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CC----HHHHHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEP--NS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDK--EN----KSAYTYL  523 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~----~~~~~~l  523 (676)
                      |..|...|++++|...|.++....-  .+    ...+...+.++... ++++|+.++++++.+..  +.    ...+..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4455555556666555555543321  11    22344445554444 77777777777766521  11    3456678


Q ss_pred             HHHHHHc-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-------cHHHHH
Q 005808          524 GLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------FSKAYH  589 (676)
Q Consensus       524 a~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~  589 (676)
                      |.+|... |++++|+++|+++.+.....      ...+..+|.++...|+|++|++.|+++....-+       ....+.
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            8888888 88999999999888764322      456778899999999999999999988764321       123456


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHH--HhccHHHHHHHHHHHHhhCC
Q 005808          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-----ECLYLRASCYH--AIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p  650 (676)
                      ..+.+++..|++..|...+++....+|...     .+...+-.++.  ....+.+|+..|....+++|
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            778889999999999999999998887532     33344444443  23458888888887777665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.96  E-value=3.1e-08  Score=89.48  Aligned_cols=120  Identities=23%  Similarity=0.272  Sum_probs=79.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      .+.....++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            34456667777777777777888777777777665543   356777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (676)
                      .+|.++...|+...+...+..++.                    .+++|++++++++..+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            777777777666555544444332                    2455666666666665554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.96  E-value=4.3e-06  Score=80.12  Aligned_cols=261  Identities=19%  Similarity=0.126  Sum_probs=202.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  458 (676)
                      .+-+++.-++..+..|+++.|.+-|+.++. +|.. .-.+..+-.-....|..+.|+.+-+.+....|.-..++...-..
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            367788889999999999999999998875 3432 22223333344568999999999999999999999998888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhc---CCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005808          459 RAALGESVEAIQDLSKALEF---EPNSAD-----ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~---~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  530 (676)
                      .+..|+|+.|+++.+.....   .++..+     .+...+... -.-+...|.....++.++.|+....-..-+..++..
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d  276 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRD  276 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence            89999999999999876543   222211     122222222 234688899999999999999998888899999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ---VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (676)
Q Consensus       531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~---al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (676)
                      |+..++-.+++.+.+..|. +.    ++..|....--+.++.-+++   ...+.|++.......+...+.-|++..|..-
T Consensus       277 ~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~  351 (531)
T COG3898         277 GNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK  351 (531)
T ss_pred             cchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence            9999999999999998876 33    23344433333344444444   4457889999999999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhh
Q 005808          608 LSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL  648 (676)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  648 (676)
                      -+.+....|. ..++..++.+-... |+-.++..++-++++-
T Consensus       352 Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         352 AEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            9999999998 67788888888766 9999999999999874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.94  E-value=5.6e-08  Score=84.97  Aligned_cols=117  Identities=22%  Similarity=0.121  Sum_probs=81.3

Q ss_pred             HcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~  602 (676)
                      ..++...+...++..+...|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+...+|.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4666666766777777777766   4556667777777777777777777777766443   345667777777777777


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (676)
                      +|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            777777552 3333445677777778888888888877777764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.94  E-value=3.5e-08  Score=89.15  Aligned_cols=118  Identities=20%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005808          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER  489 (676)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  489 (676)
                      ....+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            345567777777777777777777777777665543   34666777777777777777777777777777766666677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (676)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  550 (676)
                      |.++...|+...+...+..++.                    .+.+|+.++++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            7777666666665544444332                    2556666666666666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.93  E-value=1.6e-08  Score=81.37  Aligned_cols=98  Identities=28%  Similarity=0.402  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      .++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+.+++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            35566666666777777777777777666666666666777777777777777777776666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCC
Q 005808          463 GESVEAIQDLSKALEFEP  480 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p  480 (676)
                      |+++.|...+.+++...|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            666666666666666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.93  E-value=7.6e-08  Score=101.29  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHh--CCC
Q 005808          381 VDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQR--------ELEAAISDFTEAIQS--NPS  447 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~~~  447 (676)
                      +..++..|..++..++   +..|+.+|+++++.+|+++.++..++.++....        +...+.....+++..  +|.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            3445666766665544   667777777777777777777777666654432        223333333443332  344


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (676)
                      ++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..+++++.++|.++
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            445555555555555555555555555555555 344555555555555555555555555555555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.93  E-value=2.3e-07  Score=87.71  Aligned_cols=271  Identities=15%  Similarity=0.196  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCc--HHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSN----PSA--GEA  451 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~--~~~  451 (676)
                      +...+..|..++...++++|+....+.+..-.+.   ...+-.+..+...+|.|++++.+--..+...    ...  .++
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea   85 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA   85 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888999999999999999998754433   3345556677888888888776554443322    111  457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHH
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY  520 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~  520 (676)
                      +.++++.+....++.+++.+-...+......     ..+...++..+..++.++++++.|+.+++...++.      .++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            8889999999999999999888777664332     35677799999999999999999999998754332      467


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------cCc
Q 005808          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF  584 (676)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~  584 (676)
                      ..+|..+....++++|.-+..++.++....          .-+++.++..+..+|..-.|.++.+++.++.      +-.
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            889999999999999999999998774321          3466788999999999999999999987653      233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHH-----HHHHHHHHHhhCCC
Q 005808          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYRE-----AIKDYDAALDLELD  651 (676)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~  651 (676)
                      ......+|.+|...|+.+.|..-|+.+...-..      ...++...+.++....-..+     |++.-++++++...
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~  323 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS  323 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence            456778999999999999999999999865321      23566666666665544444     78877777776543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.92  E-value=5.9e-09  Score=76.91  Aligned_cols=64  Identities=31%  Similarity=0.408  Sum_probs=54.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                      .+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5788888889999999999999988888888999999999999999999999999988888875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.91  E-value=1.1e-07  Score=93.43  Aligned_cols=195  Identities=15%  Similarity=0.115  Sum_probs=116.0

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHH
Q 005808          422 GTARAFQRELEAAISDFTEAIQSNP--SA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHER  489 (676)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l  489 (676)
                      |.+|...|++++|...|.++....-  ++    ...+...+.++... ++++|+.++++++.+.-.  .    ..++..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4444455555555555555543211  00    22333444444444 677777777776655211  1    3467778


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHH
Q 005808          490 GIVNFKF-KDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWG  555 (676)
Q Consensus       490 a~~~~~~-~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  555 (676)
                      |.+|... |++++|+++|++++.....  .    ...+..+|.++...|+|++|+..|+++....-++       ...++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            8888888 8888888888888876321  1    2456678888888889999998888887643211       23456


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcCcH-----HHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCC
Q 005808          556 HLTQFYQDLANSEKALECLQQVLYIDKRFS-----KAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~  617 (676)
                      ..+.+++..|++..|...+++....+|...     .+...+-.++..  ...+..|+..|....++++-
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            677788888899899888888888777432     233334444433  44677777777777666543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.89  E-value=1.8e-09  Score=100.69  Aligned_cols=226  Identities=18%  Similarity=0.109  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  463 (676)
                      +-..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...+..++.++.....+|.+.+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH---------HHHHHHHHcccHH
Q 005808          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT---------YLGLALSSIGEYK  534 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~la~~~~~~g~~~  534 (676)
                      +..+|.+.++.++.+.|++.+....++.+-.    ..++    +-+.+..|....+..         .-|..+...|.++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~  251 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS  251 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence            9999999999999999998776655554432    1111    111222222221111         1234444455555


Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      .++.++...+.....+...-.+ +..|....+++.++.-..+++...|.........+.+-.-.|...++...++.++.+
T Consensus       252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~  330 (536)
T KOG4648|consen  252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV  330 (536)
T ss_pred             cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence            5555554444333222222222 334444445555555554544444433333333333333334444555555555555


Q ss_pred             CCCC
Q 005808          615 DPSN  618 (676)
Q Consensus       615 ~p~~  618 (676)
                      .|.+
T Consensus       331 ~P~~  334 (536)
T KOG4648|consen  331 APAV  334 (536)
T ss_pred             cccc
Confidence            4443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.89  E-value=4.5e-08  Score=88.16  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 005808          395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI  469 (676)
Q Consensus       395 g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~  469 (676)
                      +.|..+...+...++..+..  ..+++.+|.++...|++++|+..|++++.+.|+.   ..++..+|.++...|++++|+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            34555555555554444443  4556777777777777777777777777665542   346677777777777777777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005808          470 QDLSKALEFEPNSADILHERGIVNFKF  496 (676)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~~  496 (676)
                      ..+++++...|.....+..+|.++...
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~~~  119 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICHYR  119 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            777777777777766666666666633

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.89  E-value=6.5e-09  Score=81.16  Aligned_cols=81  Identities=27%  Similarity=0.369  Sum_probs=57.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (676)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (676)
                      +|+|+.|+..++++++.+|.  +...++.+|.+++..|++++|+..+++ ...+|.+...++.+|.++..+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            56777777777777777774  355566677777777777777777777 666666667777777777777777777777


Q ss_pred             HHHH
Q 005808          472 LSKA  475 (676)
Q Consensus       472 ~~~a  475 (676)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7653

>PRK11906 transcriptional regulator; Provisional

Probab=98.89  E-value=1.8e-07  Score=93.23  Aligned_cols=158  Identities=12%  Similarity=0.033  Sum_probs=108.7

Q ss_pred             HHHHHHHHHcc---cHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 005808          419 IGRGTARAFQR---ELEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA  483 (676)
Q Consensus       419 ~~la~~~~~~g---~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~  483 (676)
                      +..|......+   ..+.|+.+|.+++   .++|+...++..++.+++..         ....+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            56666665554   3567888899999   88888888888888887654         234566777777777777777


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HH
Q 005808          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQ  562 (676)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~  562 (676)
                      .++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|.-..+-...-.+ .+
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777654332222222 22


Q ss_pred             HcCCHHHHHHHHHH
Q 005808          563 DLANSEKALECLQQ  576 (676)
Q Consensus       563 ~~~~~~~A~~~~~~  576 (676)
                      -....+.|+..|-+
T Consensus       419 ~~~~~~~~~~~~~~  432 (458)
T PRK11906        419 VPNPLKNNIKLYYK  432 (458)
T ss_pred             cCCchhhhHHHHhh
Confidence            23445556655544

>PRK15331 chaperone protein SicA; Provisional

Probab=98.88  E-value=4.7e-08  Score=83.38  Aligned_cols=120  Identities=7%  Similarity=0.058  Sum_probs=87.1

Q ss_pred             HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      ..+.++..+..+..|.-+...|++++|...|+-+.-.+|.++..|..+|.++...++|++|+..|..+..++++++...+
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            33445556667777777777888888888887777777777777888888888888888888888888777777788888


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                      ..|.||..+|+.+.|+..|+.+++ .|.+.. ....+..++.
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-l~~~A~~~L~  149 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE-RTEDES-LRAKALVYLE  149 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-HHHHHHHHHH
Confidence            888888888888888888887777 454433 2333444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.87  E-value=5.1e-08  Score=87.80  Aligned_cols=104  Identities=18%  Similarity=0.123  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (676)
                      ...++.+|.++...|++++|+..|++++...|+   .+.++.++|.++...|++++|+..+++++...|.....+..+|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            445566666666666666666666666655443   23356666666666666666666666666666666666666666


Q ss_pred             HHH-------HhccHH-------HHHHHHHHHHhhCCCcHH
Q 005808          628 CYH-------AIGEYR-------EAIKDYDAALDLELDSME  654 (676)
Q Consensus       628 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~~  654 (676)
                      ++.       .+|+++       +|..+|++++..+|++..
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            655       555544       777777888888987643

>PRK15331 chaperone protein SicA; Provisional

Probab=98.86  E-value=6.1e-08  Score=82.70  Aligned_cols=112  Identities=13%  Similarity=0.112  Sum_probs=98.5

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 005808          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (676)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (676)
                      +..+....+...+..+..|..++..|++++|..+|+-+.-.+|.+++.|..+|.++..+++|++|+..|..+..++++++
T Consensus        26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            34445556666788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (676)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  482 (676)
                      ...+..|.|++.+|+.+.|+..|..++. .|.+
T Consensus       106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             CccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            9999999999999999999999999888 3443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.9e-06  Score=78.47  Aligned_cols=239  Identities=15%  Similarity=0.045  Sum_probs=173.8

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005808          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (676)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  501 (676)
                      .+-++..|+|..++...++.-... ........+.+.|..+|++...+......-   .....+...++.....-++.+.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            455677899999988777654433 667777888999999998876655443322   1223455566666666666666


Q ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          502 AVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (676)
Q Consensus       502 A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  579 (676)
                      -+..+.+.+....  .+......-|.++...|++++|+......     .+.++...-..++.+..+.+-|...++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6665555444322  23344555678899999999999988763     3455666667788889999999999999988


Q ss_pred             cCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          580 IDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       580 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      ++.+..-....-+++-..  .+.+.+|.-+|+..-+..|..+.....++.+...+|+|++|...++.++..++++++...
T Consensus       166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence            876543332333333333  347899999999999977778999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhhhh
Q 005808          658 LQCLAFYQVLFD  669 (676)
Q Consensus       658 ~~~~~~~~~~~~  669 (676)
                      ++..+-.-...+
T Consensus       246 Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  246 NLIVLALHLGKD  257 (299)
T ss_pred             HHHHHHHHhCCC
Confidence            877665544443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.84  E-value=1.4e-07  Score=89.97  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=93.2

Q ss_pred             cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHH
Q 005808          380 SVDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (676)
Q Consensus       380 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~  452 (676)
                      .....|..|..+ +..|+|++|+..|+..++.+|++   +.+++.+|.+++..|++++|+..|.+++..+|++   ++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            356677777776 56799999999999999999988   5799999999999999999999999999888874   7788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADI  485 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  485 (676)
                      +.+|.++...|++++|...|+++++..|+...+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            899999999999999999999999999987654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.82  E-value=5.2e-07  Score=85.32  Aligned_cols=262  Identities=18%  Similarity=0.149  Sum_probs=194.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHH
Q 005808          386 SRGIAQVNEGKYASAISIFDQILKE----DPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKR  454 (676)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~  454 (676)
                      .+..+....|.|++++..--..+..    ...  ..+++.+++..+....++.+++.+....+.+....     ..+...
T Consensus        48 ~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~  127 (518)
T KOG1941|consen   48 CLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLS  127 (518)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhh
Confidence            4456667778888877654443332    211  25678899999999999999999988887764333     356777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----C------HH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----N------KS  518 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~------~~  518 (676)
                      ++.++..++.++++++.|+.++.....+      ..++..+|.++....++++|+-+..++..+...    +      ..
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            9999999999999999999999874433      247889999999999999999999999876432    2      24


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CcHH
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSK  586 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~  586 (676)
                      +++.++..+..+|..-.|.++.+++.++.      +-.......+|.+|...|+.+.|..-|+.+.....      ....
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~  287 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE  287 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            56778999999999999999999988764      23356678899999999999999999999976432      1234


Q ss_pred             HHHHHHHHHHHcCCHHH-----HHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          587 AYHLRGLLLHGLGQHKK-----AIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      ++...|.++....-..+     |++.-++++++...-      ...+..++.+|..+|.-++=...+.++-+
T Consensus       288 al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  288 ALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            55566666655444444     777777777654321      25678899999988887776666665544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1e-07  Score=92.48  Aligned_cols=147  Identities=27%  Similarity=0.275  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (676)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  564 (676)
                      .....|..|++.|+|..|...|++++..-.....            -+.++....  .++     -..++.+++.++.++
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~------------~~~ee~~~~--~~~-----k~~~~lNlA~c~lKl  270 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS------------FDEEEQKKA--EAL-----KLACHLNLAACYLKL  270 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc------------CCHHHHHHH--HHH-----HHHHhhHHHHHHHhh
Confidence            3456678888888888888888887765321100            000111000  000     135678888999999


Q ss_pred             CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH-HHHHH
Q 005808          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYD  643 (676)
Q Consensus       565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~  643 (676)
                      ++|.+|+....+++..+|++..+++..|.++...|+|+.|+..|++++++.|+|..+...+..+-.+..++.+. .+.|.
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988888888888777666544 67777


Q ss_pred             HHHhhCC
Q 005808          644 AALDLEL  650 (676)
Q Consensus       644 ~al~~~p  650 (676)
                      ..+..-+
T Consensus       351 ~mF~k~~  357 (397)
T KOG0543|consen  351 NMFAKLA  357 (397)
T ss_pred             HHhhccc
Confidence            7776544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.81  E-value=2.4e-09  Score=100.46  Aligned_cols=106  Identities=22%  Similarity=0.303  Sum_probs=97.8

Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHH
Q 005808           30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL  108 (676)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  108 (676)
                      +..|.-+...|.+..+++..|++++||+.|+++|+++ ++...|.+||.+++++++...|+++|..|++++|+.++.|-.
T Consensus       108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf  187 (377)
T KOG1308|consen  108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF  187 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence            4566677788899999999999999999999999999 667779999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhccC
Q 005808          109 KGCAFSALGRKEEALSVWEKGYEHALH  135 (676)
Q Consensus       109 ~g~~~~~l~~~~~A~~~~~~al~~~~~  135 (676)
                      +|.+...+|+|++|...|..+..++-+
T Consensus       188 rg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  188 RGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999766543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.79  E-value=1.1e-07  Score=90.76  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHH
Q 005808          551 LEAWGHLTQFY-QDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLY  623 (676)
Q Consensus       551 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  623 (676)
                      ...++..+..+ ...|++++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|+++++.+|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45555555554 45678888888888888888776   4678888888888888888888888888776664   57788


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          624 LRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      .+|.++..+|++++|...|+++++..|++..+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            88888888888888888888888888887654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.76  E-value=5.3e-06  Score=76.19  Aligned_cols=181  Identities=16%  Similarity=0.183  Sum_probs=120.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA  451 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~  451 (676)
                      ...+..++..|...+..|+|++|+..|+.+....|..   ..+...++.+++..++++.|+..+++-+.+.|.++   .+
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            4458899999999999999999999999999888765   56889999999999999999999999999988774   46


Q ss_pred             HHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005808          452 WKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (676)
Q Consensus       452 ~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  523 (676)
                      ++..|.+++..=        -..+|+..|+..+...|++.-+-.....           +..+...+      ..--..+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~I  173 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAI  173 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHH
Confidence            666777755431        2356677777777777765321110000           00000000      1112235


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQ  575 (676)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~  575 (676)
                      |..|.+.|.+-.|+..++.+++..|+.   ..++..+..+|...|-.++|...-.
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~  228 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK  228 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            666666666666666666666665443   4455666666666666666655443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.6e-05  Score=83.23  Aligned_cols=243  Identities=17%  Similarity=0.088  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQI----------LKEDP----------MYPEALIGRGTARAFQRELEAAISDFTEA  441 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (676)
                      ..++..|..+...++.+.|+++|+++          +..+|          .++..|...|..+...|+.+.|+.+|..+
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            35566666677777777777777764          22233          22445566677777777777777777765


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCC
Q 005808          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL------DKE  515 (676)
Q Consensus       442 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~  515 (676)
                      -.        |+.+.++..-+|+.++|-...++     ..+..+.+.+|..|...|++.+|+.+|.++-..      ...
T Consensus       939 ~D--------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE 1005 (1416)
T KOG3617|consen  939 KD--------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE 1005 (1416)
T ss_pred             hh--------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43        55666666777777777665543     245566777888888888888888777766432      111


Q ss_pred             CHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCc-
Q 005808          516 NKSAYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV----------LYIDK-  582 (676)
Q Consensus       516 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~~-  582 (676)
                      +. .--.++.+....|  +.-.|..+|++.       +.....-..+|.+.|.+.+|++..-+.          -.++| 
T Consensus      1006 nd-~~d~L~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 ND-MKDRLANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred             cC-HHHHHHHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence            10 0001111111111  112222222221       001111223344444444444432111          11233 


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHH------hhcC----------------CCC---------CHHHHHHHHHHHHH
Q 005808          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSS------GLGI----------------DPS---------NIECLYLRASCYHA  631 (676)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~----------------~p~---------~~~~~~~la~~~~~  631 (676)
                      .++..+..-+..+....+|++|+..+-.      ++++                .|.         ...++..+|.++.+
T Consensus      1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence            4566666777777777777777765433      3221                111         12577889999999


Q ss_pred             hccHHHHHHHHHHH
Q 005808          632 IGEYREAIKDYDAA  645 (676)
Q Consensus       632 ~g~~~~A~~~~~~a  645 (676)
                      +|.|..|-+-|.+|
T Consensus      1158 QG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQA 1171 (1416)
T ss_pred             ccchHHHHHHHhhh
Confidence            99999888877765

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.73  E-value=1.9e-05  Score=83.76  Aligned_cols=229  Identities=14%  Similarity=0.028  Sum_probs=157.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005808          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA  468 (676)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  468 (676)
                      .-....+++.+|+..+.+.++..|+...+....|.++.+.|+.++|..+++..-...+++...+-.+-.+|..+|++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            34567789999999999999999999999999999999999999999888777777788888888899999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcccHH---------HHHH
Q 005808          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL-GLALSSIGEYK---------KAEE  538 (676)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-a~~~~~~g~~~---------~A~~  538 (676)
                      ..+|++++..+|. .+....+-.+|.+.+.|.+-.+..-+..+..|+++..+... ..++......+         -|..
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~  175 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK  175 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence            9999999999998 78888888888888888887777777777888887544443 33333333222         2333


Q ss_pred             HHHHHHhcC-ccc-HHHHHHHHHHHHHcCCHHHHHHHHHH-HH-hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          539 AHLKAIQLD-RNF-LEAWGHLTQFYQDLANSEKALECLQQ-VL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       539 ~~~~al~~~-p~~-~~~~~~la~~~~~~~~~~~A~~~~~~-al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      ..++.++.. +-. ..-....-.++..+|++++|.+.+.. .. ...+.+...-......+...+++.+-.+...+++..
T Consensus       176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            444444433 111 11112222344456666666666622 22 222333333344455556666666666666666666


Q ss_pred             CCCC
Q 005808          615 DPSN  618 (676)
Q Consensus       615 ~p~~  618 (676)
                      .+++
T Consensus       256 ~~Dd  259 (932)
T KOG2053|consen  256 GNDD  259 (932)
T ss_pred             CCcc
Confidence            6654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.73  E-value=1.3e-05  Score=85.12  Aligned_cols=215  Identities=14%  Similarity=0.031  Sum_probs=157.2

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (676)
                      ....+.+..|+...+....|..+.+.|++++|..+++..-...+++...+-.+-.+|..+|++++|...|++++..+|. 
T Consensus        31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-  109 (932)
T KOG2053|consen   31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-  109 (932)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence            3456677889999999999999999999999998888777777888888888999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHhcCCHH---------HHHHHHHHHHHhC-CCCH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER-GIVNFKFKDFN---------AAVEDLSACVKLD-KENK  517 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~~~~~---------~A~~~~~~al~~~-~~~~  517 (676)
                      .+....+-.+|.+.+.|.+-.+.--+..+..|.++..+... ..+.......+         -|...+++.++.. +-..
T Consensus       110 eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s  189 (932)
T KOG2053|consen  110 EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIES  189 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccch
Confidence            77777788888888888877777777777888876644444 33333333322         3444555555554 2211


Q ss_pred             -HHHHHHHHHHHHcccHHHHHHHHHH--HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc
Q 005808          518 -SAYTYLGLALSSIGEYKKAEEAHLK--AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (676)
Q Consensus       518 -~~~~~la~~~~~~g~~~~A~~~~~~--al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  584 (676)
                       .-....-.++..+|++++|...+..  +-...+.+...-......+...+++.+-.+...+++...+++
T Consensus       190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence             1123344566778899999998843  223344445555566777888899999999988888888876

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.72  E-value=3.3e-07  Score=92.06  Aligned_cols=124  Identities=16%  Similarity=0.046  Sum_probs=95.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (676)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  567 (676)
                      .+..++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3445555667888888888887777654   5556777877778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      +.|+.+.+++.+..|++...|..++.+|...|+++.|+..+..+--.
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            88888888888888888888888888888888888888777755444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.70  E-value=4.7e-07  Score=90.99  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=76.9

Q ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005808          423 TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (676)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  502 (676)
                      .++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3344456666666666666665543   4445666666666666666666666666666666666666666666666777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (676)
Q Consensus       503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (676)
                      +...++++...|.+...|..|+.+|...|+++.|+..++.+
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            77777766666666666666677777667766666665543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.68  E-value=7.5e-06  Score=75.20  Aligned_cols=189  Identities=19%  Similarity=0.083  Sum_probs=126.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT  521 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~  521 (676)
                      .+..++.-|...+..|++++|+..|+.+....|..   ..+...++..+++.+++++|+..+++.+.+.|.++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            45677788888888888888888888888777655   44677778888888888888888888888877664   3455


Q ss_pred             HHHHHHHHc--------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808          522 YLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (676)
Q Consensus       522 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (676)
                      ..|.++...        .-..+|+..++..++..|++.-+-              .|...+..+.   .....--..+|.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~--------------dA~~~i~~~~---d~LA~~Em~Iar  175 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP--------------DAKARIVKLN---DALAGHEMAIAR  175 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh--------------hHHHHHHHHH---HHHHHHHHHHHH
Confidence            566665432        113455666666666666653221              1111111110   001222345788


Q ss_pred             HHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          594 LLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                      .|.+.|.+..|+.-++.+++..|+..   +++..+..+|..+|-.++|.+.-.-.-...|++.
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            89999999999999999998877653   6788888899999999998776544444444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.67  E-value=3.2e-07  Score=76.58  Aligned_cols=96  Identities=19%  Similarity=0.229  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCChhH----HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh---HHHHHHHHHH
Q 005808           42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ---AYILKGCAFS  114 (676)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~~  114 (676)
                      ++-.++..|+|++|+..|+......|....    ...++.+|++.|+|++|+..+++-|+++|++++   ++|++|.++.
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            345679999999999999987666554433    689999999999999999999999999999988   9999999999


Q ss_pred             HcCC---------------HHHHHHHHHHHHhhccCCh
Q 005808          115 ALGR---------------KEEALSVWEKGYEHALHQS  137 (676)
Q Consensus       115 ~l~~---------------~~~A~~~~~~al~~~~~~~  137 (676)
                      .+..               ..+|...|++.+...|+..
T Consensus        96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9988               8899999999987777765

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.67  E-value=9.9e-08  Score=72.29  Aligned_cols=64  Identities=27%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 005808           76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (676)
Q Consensus        76 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~  139 (676)
                      +.+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|+++++.+|+.+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            4567888888888888888888888888888888888888888888888888888777766544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.65  E-value=4.9e-05  Score=73.14  Aligned_cols=265  Identities=17%  Similarity=0.090  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARA  460 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~  460 (676)
                      -+..|.+....|+-..|.+.-.+.-+.-..+  +.++..-+..-...|+++.|.+-|+.++. +|.. .-.+..+-.-..
T Consensus        87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq  165 (531)
T COG3898          87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ  165 (531)
T ss_pred             HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence            3456777777899999999988876543333  56667778888899999999999998775 3332 223333444446


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHH-HHcccH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---DKENK---SAYTYLGLAL-SSIGEY  533 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~---~~~~~la~~~-~~~g~~  533 (676)
                      ..|..+.|+.+.+++....|.-+.++...-...+..|+|+.|++..+.....   .++-.   .+-..-+... ....+.
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            7899999999999999999999999998888999999999999999876543   22211   1111122222 223468


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH---H
Q 005808          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS---S  610 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---~  610 (676)
                      ..|...-.+++++.|+....-..-+..++..|+..++-.+++.+.+..|. +.++.  ..++.+.|+.  ++.-++   +
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdt--a~dRlkRa~~  320 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDT--ALDRLKRAKK  320 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCc--HHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999998885 44332  2334455544  444444   4


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      ...+.|++.+..+..+..-...|++..|..--+.+....|...-
T Consensus       321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~  364 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA  364 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence            45678999999999999999999999999999999999887543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.64  E-value=9.5e-07  Score=72.81  Aligned_cols=91  Identities=23%  Similarity=0.146  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 005808          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERGI  491 (676)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~  491 (676)
                      ++.+|.++-..|+.++|+.+|++++......   ..+++.+|..+..+|++++|+..+++.+...|+   +..+...++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            3444444444444444444444444432221   233444444444444444444444444444443   3333334444


Q ss_pred             HHHhcCCHHHHHHHHHH
Q 005808          492 VNFKFKDFNAAVEDLSA  508 (676)
Q Consensus       492 ~~~~~~~~~~A~~~~~~  508 (676)
                      ++...|++++|+..+-.
T Consensus        84 ~L~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLE  100 (120)
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            44444444444444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.64  E-value=1.3e-06  Score=72.99  Aligned_cols=87  Identities=21%  Similarity=0.222  Sum_probs=75.6

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA  451 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~  451 (676)
                      ..++..++..|...+..|+|.+|++.|+.+....|..   ..+.+.+|.+++..+++++|+..+++.++++|.++   .+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3557889999999999999999999999999888765   67889999999999999999999999999999874   57


Q ss_pred             HHHHHHHHHHcCC
Q 005808          452 WKRRGQARAALGE  464 (676)
Q Consensus       452 ~~~la~~~~~~g~  464 (676)
                      ++..|.+++.+..
T Consensus        87 ~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   87 YYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHHhh
Confidence            7888888877654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=6.8e-06  Score=80.96  Aligned_cols=121  Identities=13%  Similarity=0.019  Sum_probs=99.9

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Q 005808          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQI-LKEDPM--------YPEALIGRGTARAFQRELEAAISDFTEAIQS-  444 (676)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  444 (676)
                      .....++.+++.++..++..|++.+|.+.+... +...|.        .-..|.++|.++++.|.|.-+..+|.++++. 
T Consensus       234 n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~  313 (696)
T KOG2471|consen  234 NIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS  313 (696)
T ss_pred             hhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence            344477889999999999999999999988754 222222        1345689999999999999999999999961 


Q ss_pred             --------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808          445 --------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (676)
Q Consensus       445 --------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (676)
                              .|         ...++.++.|..|...|+.-.|.++|.++......+|..|..++.+.+.
T Consensus       314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                    11         2356889999999999999999999999999999999999999998764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.62  E-value=1.1e-06  Score=81.40  Aligned_cols=105  Identities=22%  Similarity=0.276  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRG  456 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la  456 (676)
                      -.|..|..++..|+|..|...|..-++..|+.   +.+++++|.+++.+|+++.|...|..+.+..|++   +++++.+|
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            38888999999999999999999999999986   6899999999999999999999999999987765   78899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005808          457 QARAALGESVEAIQDLSKALEFEPNSADILH  487 (676)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  487 (676)
                      .+...+|+.++|...|+++++..|....+..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            9999999999999999999999998876544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.62  E-value=1.2e-06  Score=72.22  Aligned_cols=96  Identities=21%  Similarity=0.154  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGEAWKRR  455 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l  455 (676)
                      .++|..|.++-..|+.++|+.+|++++......   ..+++.+|..+...|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578899999999999999999999999975544   578999999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 005808          456 GQARAALGESVEAIQDLSKALE  477 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~  477 (676)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999987765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.62  E-value=1.1e-05  Score=69.22  Aligned_cols=148  Identities=17%  Similarity=0.132  Sum_probs=106.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALECLQ  575 (676)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  575 (676)
                      =+.+....-..+.+...|. ..-.+.+|..+...|++.+|...|++++. +..+++..+..++...+..+++..|...++
T Consensus        70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            3445555555555555554 33456678888888888888888887775 345667777888888888888888888888


Q ss_pred             HHHhcCc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808          576 QVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (676)
Q Consensus       576 ~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (676)
                      +..+.+|  ..+.....+|..+...|.+.+|...|+.++...|+ +......+..+.++|+..+|..-+..+.
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            8887776  34666777788888888888888888888888777 6777777888888887766665554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.60  E-value=2.4e-07  Score=70.19  Aligned_cols=68  Identities=28%  Similarity=0.459  Sum_probs=55.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      ..+|...+++++|+.++++++..+|+++..+..+|.++..+|++.+|...|+++++..|+++.+....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            46778888888888888888888888888888888888888888888888888888888887765443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.60  E-value=1.3e-07  Score=70.40  Aligned_cols=64  Identities=31%  Similarity=0.354  Sum_probs=41.3

Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      +..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            4556666666666666666666666666666666666666666666666666666665544433

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.59  E-value=1.9e-07  Score=69.56  Aligned_cols=65  Identities=20%  Similarity=0.308  Sum_probs=37.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (676)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  456 (676)
                      +..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34555666666666666666666666666666666666666666666666655555555444443

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=2.7e-06  Score=73.81  Aligned_cols=112  Identities=27%  Similarity=0.331  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      ++.+-.-|.-++..|+|++|..-|..++...|..     ...|.+.|.++..++.++.|+..+.++++++|.+..++.+.
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            4556677889999999999999999999998875     34667888899999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (676)
                      +.+|..+..+++|+..|.+++..+|....+....+.+
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            9999999999999999999999998776655444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.51  E-value=3.1e-06  Score=78.57  Aligned_cols=102  Identities=13%  Similarity=0.025  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHH
Q 005808          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRAS  627 (676)
Q Consensus       554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  627 (676)
                      .+..+.-++..|+|..|...|...++..|+.   +.++++||.+++.+|+|+.|...|..+++..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4444555555566666666666666655543   3556666666666666666666666666655443   466666666


Q ss_pred             HHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          628 CYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      +...+|+.++|...|+++++..|+...+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            6666666666666666666666666554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.50  E-value=4.6e-07  Score=90.15  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808           67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEH  132 (676)
Q Consensus        67 ~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~l~~~~~A~~~~~~al~~  132 (676)
                      +.+..++|+|.+|+++|+|++|+..|++||+++|++..+   |+.+|.+|..+|++++|+.+|++|+++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344458999999999999999999999999999999965   999999999999999999999999765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.46  E-value=4.2e-05  Score=65.88  Aligned_cols=124  Identities=21%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALS  528 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~  528 (676)
                      .+.+|......|++.+|..+|++++. +...++..+..++...+..+++..|...+++..+.+|.  .++....+|..+.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            34556666666666666666666553 34445556666666666666666666666666655543  2344555566666


Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  576 (676)
                      ..|.+.+|...|+.++...|+ +.+....+..+..+|+.++|..-+..
T Consensus       172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            666666666666666665554 44455555555666655555444333

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=7.5e-05  Score=73.89  Aligned_cols=266  Identities=17%  Similarity=0.090  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCCC------c--HHHHHH
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA-IQSNPS------A--GEAWKR  454 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~------~--~~~~~~  454 (676)
                      .......++...+..-+..-.+.+.....+.+.+++..+..++..|++.+|.+.+... +...|.      .  ...|.+
T Consensus       209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN  288 (696)
T KOG2471|consen  209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN  288 (696)
T ss_pred             hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence            3334445566667777777777777777788999999999999999999999987654 222222      1  235678


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc---------CC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808          455 RGQARAALGESVEAIQDLSKALEF---------EP---------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (676)
                      +|.+++..|.|.-+..+|.++++.         .|         ..-+++++.|..|...|++-.|.++|.++....-.+
T Consensus       289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n  368 (696)
T KOG2471|consen  289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN  368 (696)
T ss_pred             cceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999951         11         235689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccc-------------------------------------------------HHHHHHHHHHHHhcC
Q 005808          517 KSAYTYLGLALSSIGE-------------------------------------------------YKKAEEAHLKAIQLD  547 (676)
Q Consensus       517 ~~~~~~la~~~~~~g~-------------------------------------------------~~~A~~~~~~al~~~  547 (676)
                      +..|..++.+++...+                                                 .+-|.-+++.++-+-
T Consensus       369 PrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll  448 (696)
T KOG2471|consen  369 PRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLL  448 (696)
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcC
Confidence            9999999998865321                                                 223444444443221


Q ss_pred             ---------------------------------------------c-cc-----------HHHHHHHHHHHHHcCCHHHH
Q 005808          548 ---------------------------------------------R-NF-----------LEAWGHLTQFYQDLANSEKA  570 (676)
Q Consensus       548 ---------------------------------------------p-~~-----------~~~~~~la~~~~~~~~~~~A  570 (676)
                                                                   | ..           ..++-..+.+-...|+.-.|
T Consensus       449 ~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~A  528 (696)
T KOG2471|consen  449 NEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKA  528 (696)
T ss_pred             chhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhH
Confidence                                                         1 00           12344566677889999999


Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHhh------c-----------------CCCC-----
Q 005808          571 LECLQQVLYIDKRFSKAYHLRGLLL-----HGLGQHKKAIKDLSSGL------G-----------------IDPS-----  617 (676)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~-----  617 (676)
                      +..-++.++. |+...++..+|.+|     .-+.+..+|...+.-.+      .                 ++|.     
T Consensus       529 L~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~  607 (696)
T KOG2471|consen  529 LSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTR  607 (696)
T ss_pred             HHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCc
Confidence            9999988865 34455555555554     45677777776654311      0                 0111     


Q ss_pred             -----C-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          618 -----N-----IECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       618 -----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                           .     ...++++|.++.-+|++++|..++..+..+-|
T Consensus       608 q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h  650 (696)
T KOG2471|consen  608 QSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH  650 (696)
T ss_pred             ccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence                 1     13678899999999999999999999988877

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=0.00037  Score=63.67  Aligned_cols=134  Identities=16%  Similarity=0.177  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------cCcHHHHHHH
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID------KRFSKAYHLR  591 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~l  591 (676)
                      +.+.+..++...|.|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+++.+-+..      .....+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44445555556666666666666666655 3445555566666666666666666666443221      1223344555


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      +.++.-.+++..|...+.+++..+|.++.+-.+.|.|..-+|+..+|++.++.+++..|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            5556666666666666666666666666666666666666666666666666666666653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.0006  Score=62.33  Aligned_cols=226  Identities=15%  Similarity=0.115  Sum_probs=157.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcccHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------------------PEALIGRGTARAFQRELEAAISDFTE  440 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~  440 (676)
                      ....|...-..+.....+++|..-+...-+.+..+                   .......|.+....|+..+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34455555556666666777766665554433211                   11123334555555666555554443


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Q 005808          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSA  519 (676)
Q Consensus       441 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~  519 (676)
                      ....       ...+..........+..+..+++-+      ..+.+.+..++.-.|.|.-....+.++++.+ |..+..
T Consensus       148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L  214 (366)
T KOG2796|consen  148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL  214 (366)
T ss_pred             HHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence            3221       0111122222222344555555432      3466778888888999999999999999988 567788


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808          520 YTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (676)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (676)
                      ...+|.+.++.|+.+.|..+++..-+..      .....+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.|.
T Consensus       215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL  294 (366)
T KOG2796|consen  215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL  294 (366)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence            8889999999999999999998654332      2235566778888999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808          594 LLHGLGQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p~~  618 (676)
                      |+.-.|+...|++.++.++...|..
T Consensus       295 cllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  295 CLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.34  E-value=1.1e-06  Score=67.45  Aligned_cols=63  Identities=25%  Similarity=0.328  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808           70 QDICNRAFCYSQLELHKHVIRDCDKALQLD-------PTLLQAYILKGCAFSALGRKEEALSVWEKGYEH  132 (676)
Q Consensus        70 ~~~~~ra~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~  132 (676)
                      ..+.++|.+|..+|+|++|+..+++|+++.       |..+.++..+|.+|..+|++++|+..|++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            458899999999999999999999999663       233569999999999999999999999999654

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=0.00047  Score=72.66  Aligned_cols=217  Identities=18%  Similarity=0.115  Sum_probs=130.5

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (676)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (676)
                      ...|.+....|-.++|...|.+.-..        -.+-..|...|.|++|.+..+.--.+.  -...|++.+..+...++
T Consensus       804 akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D  873 (1416)
T KOG3617|consen  804 AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD  873 (1416)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence            34456666777777787777776442        245566666777777766654322222  13456677777777777


Q ss_pred             HHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------------
Q 005808          499 FNAAVEDLSAC----------VKLDKE----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------------  546 (676)
Q Consensus       499 ~~~A~~~~~~a----------l~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------  546 (676)
                      .+.|+++|+++          +..+|.          ++..|.+.|..+...|+.+.|+.+|..+-..            
T Consensus       874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK  953 (1416)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence            77777777664          122222          3445666677777777777777777765432            


Q ss_pred             ---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcCc--------------HHHHHHHHHHHHH
Q 005808          547 ---------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF--------------SKAYHLRGLLLHG  597 (676)
Q Consensus       547 ---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~--------------~~~~~~la~~~~~  597 (676)
                               ...+..+-+.+|+.|...|+..+|+..|.++-..      ...+              +.-....|..|..
T Consensus       954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen  954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred             chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence                     1334567788899999999999998888776422      1110              0011122333333


Q ss_pred             cC-CHHHHHHHHHHh-----------------------hcCCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          598 LG-QHKKAIKDLSSG-----------------------LGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       598 ~g-~~~~A~~~~~~a-----------------------l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                      .| +...|+..|.++                       -.++| .++..+..-+..+....+|++|...+-.+
T Consensus      1034 ~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1034 LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred             cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33 444444433332                       11233 46788888889999999999988765444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.29  E-value=3.1e-05  Score=62.34  Aligned_cols=95  Identities=23%  Similarity=0.317  Sum_probs=54.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHh
Q 005808          557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAI  632 (676)
Q Consensus       557 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~  632 (676)
                      -|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+.+++++..+..    .++...|.+|..+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            344455556666666666666666666666666666666666666666666666665533221    3455566666666


Q ss_pred             ccHHHHHHHHHHHHhhCCC
Q 005808          633 GEYREAIKDYDAALDLELD  651 (676)
Q Consensus       633 g~~~~A~~~~~~al~~~p~  651 (676)
                      |+-+.|...|+.+-++...
T Consensus       129 g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             CchHHHHHhHHHHHHhCCH
Confidence            6666666666665555433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.29  E-value=4.1e-06  Score=83.54  Aligned_cols=68  Identities=19%  Similarity=0.058  Sum_probs=51.2

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH---HHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA---YHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      +|+++..++++|.+|...|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.+++++++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56667777777777777777777777777777777777643   777777777777777777777777776

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00069  Score=60.86  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=48.5

Q ss_pred             HHHHHHHc-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH-------HHH
Q 005808          523 LGLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAY  588 (676)
Q Consensus       523 la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~  588 (676)
                      +|.+|... .++++|+.+|+++-+.....      ...+...+..-...++|.+|+..|+++....-+++       ..+
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf  198 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF  198 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence            44444332 45555555555554433221      22333444444555666666666665554333222       223


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808          589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (676)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (676)
                      +.-|.|++-..+.-.+...+++..+.+|...
T Consensus       199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  199 LKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            4455555555666666666666666666543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.00015  Score=68.37  Aligned_cols=160  Identities=14%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHH
Q 005808          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNF  494 (676)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~  494 (676)
                      ...+.+.+..|++.+|....++.++..|.+.-++..--.+++..|+...-...+++.+.. +|+.   ..+.-.++..+.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            334556677888888888889999999988888888888888889888888888888876 6555   334556677788


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHH
Q 005808          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA  570 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A  570 (676)
                      ..|-|++|.+..++++++++.+..+...++.++...|++.++.+.+.+.-..-...    ..-|...+.++...+.|+.|
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a  266 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA  266 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence            88999999999999999999988888888999999999999988887654332221    23345667778888889999


Q ss_pred             HHHHHHHH
Q 005808          571 LECLQQVL  578 (676)
Q Consensus       571 ~~~~~~al  578 (676)
                      +++|++-+
T Consensus       267 leIyD~ei  274 (491)
T KOG2610|consen  267 LEIYDREI  274 (491)
T ss_pred             HHHHHHHH
Confidence            98887654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.0015  Score=58.73  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=131.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----C-cHHHHHHHHHHHHHcCCHH
Q 005808          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-----S-AGEAWKRRGQARAALGESV  466 (676)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~-~~~~~~~la~~~~~~g~~~  466 (676)
                      ..+.+++|.++|.++              |..|....+|..|-..|.++-+..-     + ....+...+.+| +.+++.
T Consensus        26 g~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~   90 (288)
T KOG1586|consen   26 GSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPE   90 (288)
T ss_pred             CCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChH
Confidence            345788888877765              8888888889988888888865421     1 234455555555 455999


Q ss_pred             HHHHHHHHHHhcCCCCHH------HHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccH
Q 005808          467 EAIQDLSKALEFEPNSAD------ILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEY  533 (676)
Q Consensus       467 ~A~~~~~~al~~~p~~~~------~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~  533 (676)
                      +|+.++++++++..+-..      .+..+|.+|... .++++|+.+|+++-......      ...+...+..-..+++|
T Consensus        91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY  170 (288)
T KOG1586|consen   91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY  170 (288)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999998765544      344788888765 89999999999987764332      23455567777788999


Q ss_pred             HHHHHHHHHHHhcCcccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH
Q 005808          534 KKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  585 (676)
                      .+|+..|++.....-+++       ..++.-|.+++-..+.-.+...+++..+.+|...
T Consensus       171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            999999999887655542       3345667777777888888888888888999654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.20  E-value=1.4e-05  Score=68.96  Aligned_cols=92  Identities=17%  Similarity=0.248  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhC----------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--
Q 005808           52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLEL----------HKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR--  118 (676)
Q Consensus        52 y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~--  118 (676)
                      |+.|.+.|+.....+ .++..+.+-|.+++.+.+          +++|+.-++.||.++|+...|++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            457889999989999 556668999999988855          4678999999999999999999999999998875  


Q ss_pred             ---------HHHHHHHHHHHHhhccCChHHHHHH
Q 005808          119 ---------KEEALSVWEKGYEHALHQSADLKQF  143 (676)
Q Consensus       119 ---------~~~A~~~~~~al~~~~~~~~~~~~~  143 (676)
                               |+.|..+|++|.+.+|+.....+.|
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence                     7888999999988888876655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.19  E-value=0.0098  Score=60.34  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=56.7

Q ss_pred             HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (676)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (676)
                      ..++.+|.+.+.|+.+.+.+..+ -+++....|++.+...|..+.+|.......+...+|+....+|.+++.
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34567888888888888776665 888888888888888888888888888888888888888888877764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.18  E-value=2.9e-06  Score=65.09  Aligned_cols=65  Identities=28%  Similarity=0.480  Sum_probs=41.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPS---NIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      ...++..+|.+|...|++++|+.+|++++++    .++   ...++.++|.++..+|++++|++++++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455666666666666666666666666643    111   1356667777777777777777777777664

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.16  E-value=2.4e-06  Score=52.68  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808           92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (676)
Q Consensus        92 ~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~  123 (676)
                      |++||+++|+++.+|+.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            78999999999999999999999999999996

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.00027  Score=66.72  Aligned_cols=159  Identities=14%  Similarity=0.058  Sum_probs=134.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHH
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-DKEN---KSAYTYLGLALSS  529 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~  529 (676)
                      .-+.+....|+..+|...+++.++..|.+.-++..--..++..|+...-...+++++.. +++.   ..+.-.++..+..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34556677899999999999999999999988888889999999999999999999877 5555   4556677888999


Q ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHH
Q 005808          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAI  605 (676)
Q Consensus       530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~  605 (676)
                      .|-|++|.+..+++++++|.+..+....+.++...|++.++.+.+.+--..-...    ..-|...|.++...+.|+.|+
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            9999999999999999999999999999999999999999999887754332211    123566788899999999999


Q ss_pred             HHHHHhh
Q 005808          606 KDLSSGL  612 (676)
Q Consensus       606 ~~~~~al  612 (676)
                      ++|++-+
T Consensus       268 eIyD~ei  274 (491)
T KOG2610|consen  268 EIYDREI  274 (491)
T ss_pred             HHHHHHH
Confidence            9998754

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.0019  Score=58.55  Aligned_cols=168  Identities=14%  Similarity=0.061  Sum_probs=89.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----C
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN-----P  446 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~  446 (676)
                      ......+...+.+|...++|++|..++.++.+-..++      +.++-..|.+......+.++..+++++..+.     |
T Consensus        28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp  107 (308)
T KOG1585|consen   28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP  107 (308)
T ss_pred             hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence            3345667777788888899999999999998654443      3445556666677777888888888876542     2


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CC
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKL------DK  514 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~  514 (676)
                      +....-...+--.....++++|+..|++++.+...+      .+.+...+.++.+..++.+|-..+.+-...      .+
T Consensus       108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~  187 (308)
T KOG1585|consen  108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN  187 (308)
T ss_pred             chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence            222222222222334445556666665555442221      123344455555555555555444433211      11


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808          515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (676)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (676)
                      .....+.....++...++|..|..+++..-+
T Consensus       188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q  218 (308)
T KOG1585|consen  188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ  218 (308)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence            1122233333334444455555555555433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.13  E-value=0.00016  Score=70.68  Aligned_cols=138  Identities=9%  Similarity=-0.063  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (676)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (676)
                      .+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3577777888888888999999999987666678888888888666 455566999999999999988899988888899


Q ss_pred             HcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          597 GLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      ..|+.+.|..+|++++..-|...   .+|......-...|+.+......+++.+..|+....
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            99999999999999988766544   578888888888999999999999999998886553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.12  E-value=3.2e-05  Score=66.83  Aligned_cols=105  Identities=14%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      ++.|.+.++.....+|.+.+.+++.|.++..+.++...-+.                        ..-+++|+.-|+.++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es------------------------~~miedAisK~eeAL   62 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPES------------------------KKMIEDAISKFEEAL   62 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHH------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchH------------------------HHHHHHHHHHHHHHH
Confidence            45566666666666666666666666665544332110000                        012345566666666


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808          613 GIDPSNIECLYLRASCYHAIGE-----------YREAIKDYDAALDLELDSMEKFVLQCL  661 (676)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~  661 (676)
                      .++|+..++++.+|.+|...+.           |++|..+|++|...+|++......+.+
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            6666666666666666655543           778888888888888888765544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.05  E-value=0.0014  Score=66.04  Aligned_cols=186  Identities=13%  Similarity=0.062  Sum_probs=102.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005808          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA  468 (676)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  468 (676)
                      ....+..+.+.-++.-.++++++|+.+.+|..++.-..  .-..+|..+|+++++.....    +.........|..-+ 
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e-  248 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWE-  248 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhh-
Confidence            34456788999999999999999999999988875432  23567778888777643211    000001111111101 


Q ss_pred             HHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          469 IQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (676)
Q Consensus       469 ~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (676)
                            .+...+.  ...+...+|.+..+.|+.++|++.++..++..|.  +..++.++..++...+.|.++...+.+.-
T Consensus       249 ------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  249 ------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             ------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence                  1100111  1234455666666667777777777666665554  23456666666666666666666666643


Q ss_pred             hc-CcccHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCcCcHHH
Q 005808          545 QL-DRNFLEAWGHLTQFYQD-LAN---------------SEKALECLQQVLYIDKRFSKA  587 (676)
Q Consensus       545 ~~-~p~~~~~~~~la~~~~~-~~~---------------~~~A~~~~~~al~~~~~~~~~  587 (676)
                      ++ -|+.....+..+.+-.+ .++               -..|++.+.++++.+|..+..
T Consensus       323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            22 13333333333322211 111               123566777777777765544

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.03  E-value=0.00022  Score=69.69  Aligned_cols=133  Identities=15%  Similarity=0.054  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (676)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (676)
                      +|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            344444555555555555555555554333344555555555444 2333335555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Q 005808          496 FKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (676)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  549 (676)
                      .|+.+.|..+|++++..-+...   .+|......-...|+.+....+.+++.+..|.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            5555555555555555443332   34444444444455555555555554444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.0015  Score=59.15  Aligned_cols=199  Identities=15%  Similarity=0.064  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE  488 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  488 (676)
                      +..+..-+.++....++++|...+.++.+-..++.      .++-..+.+......+.++..+++++...          
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l----------  100 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL----------  100 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------
Confidence            34455555666666677777777776664433321      22233334444444455555555544332          


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHH
Q 005808          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQ  562 (676)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~  562 (676)
                          |.+.|..+.|-..++++-               -....-++++|+.+|++++.....+      .+.+...++++.
T Consensus       101 ----Y~E~GspdtAAmaleKAa---------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen  101 ----YVECGSPDTAAMALEKAA---------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             ----HHHhCCcchHHHHHHHHH---------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence                222333333322222221               1223334555555555555443222      233444555666


Q ss_pred             HcCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHh
Q 005808          563 DLANSEKALECLQQVLYI------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNIECLYLRASCYHAI  632 (676)
Q Consensus       563 ~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~  632 (676)
                      +..++.+|-..+.+-...      .++....+.....+++...+|..|...++...++    .|++..+..+|-..| ..
T Consensus       162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~  240 (308)
T KOG1585|consen  162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE  240 (308)
T ss_pred             hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence            666666665555443221      2222334444445555556777777777665543    234445555554444 34


Q ss_pred             ccHHHHHHHHH
Q 005808          633 GEYREAIKDYD  643 (676)
Q Consensus       633 g~~~~A~~~~~  643 (676)
                      |+.++..+.+.
T Consensus       241 gD~E~~~kvl~  251 (308)
T KOG1585|consen  241 GDIEEIKKVLS  251 (308)
T ss_pred             CCHHHHHHHHc
Confidence            56665555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.00  E-value=1.1e-05  Score=50.16  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 005808           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (676)
Q Consensus        71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~  102 (676)
                      .|+++|.+|+.+|++++|+..|++||+++|++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            46677777777777777777777777777753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.99  E-value=0.00085  Score=68.14  Aligned_cols=98  Identities=24%  Similarity=0.262  Sum_probs=87.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH
Q 005808          560 FYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (676)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (676)
                      .+...|+...|+.++..++...|... ....++|.++.+.|-...|-..+.+++.+....+-.++.+|..+..+.+.+.|
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence            34568999999999999999888543 45788999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHH
Q 005808          639 IKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       639 ~~~~~~al~~~p~~~~~~~  657 (676)
                      ++.|+.|++++|+++..--
T Consensus       696 ~~~~~~a~~~~~~~~~~~~  714 (886)
T KOG4507|consen  696 LEAFRQALKLTTKCPECEN  714 (886)
T ss_pred             HHHHHHHHhcCCCChhhHH
Confidence            9999999999999988643

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=8.4e-05  Score=66.81  Aligned_cols=98  Identities=19%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ..-+-..|..++....|..|+..|.+++..+|..+..|.+.+.++++..+++.+.....+++++.|+....++.+|....
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            34455668888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhc
Q 005808          461 ALGESVEAIQDLSKALEF  478 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~  478 (676)
                      ....+++|+..+.++..+
T Consensus        90 ~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   90 QSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hhccccHHHHHHHHHHHH
Confidence            999999999999999654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.97  E-value=1.8e-05  Score=52.55  Aligned_cols=42  Identities=24%  Similarity=0.158  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005808           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (676)
Q Consensus        70 ~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~  111 (676)
                      ..+..+|.+|.++|++++|+..++++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            457788899999999999999999999999999999988875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=2.6e-05  Score=77.75  Aligned_cols=105  Identities=22%  Similarity=0.076  Sum_probs=88.5

Q ss_pred             hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChhHHH
Q 005808           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQAYI  107 (676)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~  107 (676)
                      +-...+.-..+++..|..+....||..|+++++.. .....|.|||.++.+-   |+--.|+.||-.|+.+||-..+||+
T Consensus       370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~  449 (758)
T KOG1310|consen  370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF  449 (758)
T ss_pred             chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence            33333444467788899999999999999999988 5666699999999886   5778999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 005808          108 LKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (676)
Q Consensus       108 ~~g~~~~~l~~~~~A~~~~~~al~~~~~~  136 (676)
                      +++.++..++++.+|+.+...+.-..|..
T Consensus       450 ~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  450 RLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            99999999999999998887775555533

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.0038  Score=57.30  Aligned_cols=126  Identities=18%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 005808          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLS  473 (676)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~  473 (676)
                      .-..|+.+-..++..+|.+-.+|...-.++..++ +..+-++++...++.+|++..+|...-.+....|++. .-++..+
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~  137 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK  137 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence            3345555555555555555444444444433322 3344444555555555555555544444444444444 4444444


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (676)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (676)
                      .++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|.
T Consensus       138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN  185 (318)
T KOG0530|consen  138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN  185 (318)
T ss_pred             HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence            455444444444444444444444455555555554444433333333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.91  E-value=2.4e-05  Score=51.95  Aligned_cols=41  Identities=24%  Similarity=0.258  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 005808          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (676)
                      .++..+|.+|..+|++++|++.|+++++.+|+++.+|..++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            45666777777777777777777777777777776666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.85  E-value=0.0027  Score=63.10  Aligned_cols=165  Identities=12%  Similarity=-0.000  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALEF----EPNSADILHERGIVNFK---FKDFNAAVEDLSA-CVKLDKENKSAYTYL  523 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~~~~~~~~~~l  523 (676)
                      ...+-..|....+|+.-+.+.+.+-..    .++.+.+.+.+|.++.+   .|+.++|+..+.. .....+.+++.+..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            334444444445555544444444333    22334444445555544   4555555555555 223334444555555


Q ss_pred             HHHHHHc---------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------h----cCc
Q 005808          524 GLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL--------Y----IDK  582 (676)
Q Consensus       524 a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~----~~~  582 (676)
                      |.+|-..         ...++|+.+|.++.+..|+. ..-.+++.++...|...+...-+++..        +    ..-
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5544321         12556666666666666432 222344444444443222221111111        0    011


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (676)
                      .+.+.+-.++.+..-.|++++|...++++++..|.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            22233334455555556666666666666655544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.85  E-value=0.012  Score=60.24  Aligned_cols=66  Identities=26%  Similarity=0.232  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHc------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc-----------------HHHHHHHH
Q 005808          586 KAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-----------------YREAIKDY  642 (676)
Q Consensus       586 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~  642 (676)
                      .++..+|......      +..++++..|..+++..|+...+|+.+|..+...-+                 ...|+..|
T Consensus       253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y  332 (352)
T PF02259_consen  253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY  332 (352)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence            4566666666666      788888889999999988888888888887654421                 13477777


Q ss_pred             HHHHhhCCC
Q 005808          643 DAALDLELD  651 (676)
Q Consensus       643 ~~al~~~p~  651 (676)
                      -+++...+.
T Consensus       333 ~~al~~~~~  341 (352)
T PF02259_consen  333 LKALSLGSK  341 (352)
T ss_pred             HHHHhhCCC
Confidence            777777776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=4.4e-05  Score=47.38  Aligned_cols=33  Identities=33%  Similarity=0.441  Sum_probs=29.3

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 005808          103 LQAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (676)
Q Consensus       103 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~  135 (676)
                      +++|+++|.+|..+|++++|+.+|++|++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999887775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.01  Score=64.43  Aligned_cols=230  Identities=15%  Similarity=0.125  Sum_probs=120.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005808          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (676)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  467 (676)
                      |......+-|++|..+|.+-    .-+..+..   .+....+..+.|.++.+++     +.+.+|..+|.+....|...+
T Consensus      1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence            44455555666666666542    01111111   1112234444444444432     345667777777777777777


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------------------HHHH
Q 005808          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---------------------------KSAY  520 (676)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------~~~~  520 (676)
                      |++.|-++     +++..+.....+..+.|.|++-++++..+-+.....                           ..-.
T Consensus      1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i 1197 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANI 1197 (1666)
T ss_pred             HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhH
Confidence            77766543     455666666666667777777766666555432211                           1111


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------------------
Q 005808          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------------------  582 (676)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------------  582 (676)
                      ...|.-++..|.|+.|.-+|.        +..-|..++..+...|+|..|....+++-....                  
T Consensus      1198 ~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred             HHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH
Confidence            223444444455555444443        234456677777777777777777766532110                  


Q ss_pred             -------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808          583 -------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD  643 (676)
Q Consensus       583 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  643 (676)
                             -+.+-+-.+...|...|-+++-+..++.++.+...+...+..||.+|.+- ++++-.+.++
T Consensus      1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred             hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence                   01122334555566666666666666666666655555666666655432 3444444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.79  E-value=0.012  Score=58.66  Aligned_cols=32  Identities=13%  Similarity=0.078  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  584 (676)
                      .+-.++.+..-.|++++|.+.+++++...|..
T Consensus       307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            33445555666677777777777777666543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.79  E-value=0.0023  Score=64.44  Aligned_cols=197  Identities=16%  Similarity=0.048  Sum_probs=126.0

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      +....-..+..-..+..+...-++...+|++++|+.+.+|..++.-.  .....+|..+++++++......    .....
T Consensus       166 D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~  239 (539)
T PF04184_consen  166 DALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQF  239 (539)
T ss_pred             CccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhh
Confidence            33333344555566778899999999999999999999988877532  3346788888888887633211    11111


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHH
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~  602 (676)
                      ....|..-+       .+...+.  ...+...+|.+..+.|+.++|++.++..++..|.  +..+..++..++...+.|.
T Consensus       240 ~~~~g~~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya  312 (539)
T PF04184_consen  240 LQHHGHFWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA  312 (539)
T ss_pred             hhcccchhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence            111111111       1111111  1445567888888888888888888888877664  4567888888888888888


Q ss_pred             HHHHHHHHhhcC-CCCCHHHHHHHHHHHHH-hcc---------------HHHHHHHHHHHHhhCCCcHHHH
Q 005808          603 KAIKDLSSGLGI-DPSNIECLYLRASCYHA-IGE---------------YREAIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       603 ~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~  656 (676)
                      ++...+.+.-+. -|+.....+..+.+-.+ .++               -..|.+.+.+|++.+|.-+...
T Consensus       313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            888888886443 24555555544443322 111               1346788999999999877643

The molecular function of this protein is uncertain.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.77  E-value=0.055  Score=54.01  Aligned_cols=92  Identities=9%  Similarity=-0.050  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----H---------H--
Q 005808          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----E---------A--  451 (676)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~---------~--  451 (676)
                      +-...+-..+.+.-...+...-+..|..+......|...++.+.+.+|+..+......-....    +         .  
T Consensus        51 rilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l  130 (549)
T PF07079_consen   51 RILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFL  130 (549)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHH
Confidence            333344455666655555555566777788888889999999999999988877665422221    1         1  


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALEF  478 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~  478 (676)
                      -...+.++...|++.++...+++.+..
T Consensus       131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen  131 DEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            122577888999999999999888754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.74  E-value=5.7e-05  Score=75.27  Aligned_cols=111  Identities=24%  Similarity=0.326  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      .+-..|..++..+.|+.|+..|.++++++|+++..+...+..+...+++..|+..+.++++.+|....+|+..|.+.+..
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            34456777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          463 GESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      +.+.+|+..|+......|+++.+...+..+-
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            9999999999999999999998877666553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=7.6e-05  Score=46.31  Aligned_cols=32  Identities=31%  Similarity=0.305  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 005808           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (676)
Q Consensus        71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~  102 (676)
                      .++.+|.+++.+|+|++|+..|+++++++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45666666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.071  Score=53.62  Aligned_cols=191  Identities=16%  Similarity=0.149  Sum_probs=136.5

Q ss_pred             HcCCHHHHHHHHHHHHhcCCC------CHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-------C
Q 005808          461 ALGESVEAIQDLSKALEFEPN------SAD--------ILHERGIVNFKFKDFNAAVEDLSACVKL---DKE-------N  516 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~------~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~-------~  516 (676)
                      ..|-+++|.++-++++.....      ...        .+-.++.+-.-.|++.+|++....+...   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            446678888887777754211      111        2334566667789999999888777654   344       2


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---------
Q 005808          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-F--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---------  584 (676)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------  584 (676)
                      +.++..+|......+.++.|...|..+.+.... +  .....++|.+|.+.|+-+.-.+.++..   .|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence            356677888888899999999999999886443 2  345568899999988776655555443   3331         


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       585 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                       ..+++..|...+.++++.+|...+.+.++....      ..-.+..++.+..-.|+..++.+...-++++....++
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence             346778889999999999999999999987521      1235667888999999999999988888776544333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.70  E-value=0.014  Score=63.00  Aligned_cols=262  Identities=16%  Similarity=0.050  Sum_probs=185.4

Q ss_pred             CcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQ  443 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~  443 (676)
                      .+......+|.+++.-     .|.+.|+.+|..+.+.     .-.++.+.+.+|.+|....     ++..|+.+|.++..
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            3466777778777654     5899999999998761     1124667888999998853     77889999999987


Q ss_pred             hCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC
Q 005808          444 SNPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKEN  516 (676)
Q Consensus       444 ~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~  516 (676)
                      .  .++++.+.+|.++..-.   +...|..+|..+....  +..+.+.++.+|..    ..+...|..++.++...+  .
T Consensus       322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~  395 (552)
T KOG1550|consen  322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N  395 (552)
T ss_pred             c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence            6  45677788898887765   6789999999998765  67888888888865    358899999999999886  4


Q ss_pred             HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCcccHH---HHH-HHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHH
Q 005808          517 KSAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQD----LANSEKALECLQQVLYIDKRFSKA  587 (676)
Q Consensus       517 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~---~~~-~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~  587 (676)
                      +.+...++..+..- +.+..+...+.......-..+.   ++. ........    ..+...+...+.++.  ...+..+
T Consensus       396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a  473 (552)
T KOG1550|consen  396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADA  473 (552)
T ss_pred             hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHH
Confidence            45455555544332 7777766666555444322211   111 11111111    124555666666654  3456778


Q ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCCc
Q 005808          588 YHLRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       588 ~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ...+|.+|..-    .+++.|...|.++....   ....+++|.++..    .. ...|.++|.++.+.+...
T Consensus       474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRA  542 (552)
T ss_pred             HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchh
Confidence            88888888764    46999999999998877   8899999999864    23 789999999998876654

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.012  Score=54.05  Aligned_cols=248  Identities=15%  Similarity=0.165  Sum_probs=183.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHH
Q 005808          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-GESVEAIQDL  472 (676)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~  472 (676)
                      ..+|.++..+|+.++..+..+                 ..|+..-..++.++|.+..+|...-.++..+ .+..+-++++
T Consensus        39 te~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l  101 (318)
T KOG0530|consen   39 TEDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL  101 (318)
T ss_pred             chhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence            357888888888887766554                 4677777888999999988887776666554 4678889999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Q 005808          473 SKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (676)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  551 (676)
                      ...+..+|.+-.+|...-.+....|++. .-+.+.+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-
T Consensus       102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN  181 (318)
T KOG0530|consen  102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN  181 (318)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999988888899888 888999999999999999999999999999999999999999999887777


Q ss_pred             HHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-cC--CHHHHHHHHHHhh-cCCCCCHHH
Q 005808          552 EAWGHLTQFYQD-LA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG--QHKKAIKDLSSGL-GIDPSNIEC  621 (676)
Q Consensus       552 ~~~~~la~~~~~-~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~  621 (676)
                      .+|...-.+... .|     ..+.-+.+..+.+...|++..+|..+.-++.. .|  .+..-.......+ ......|..
T Consensus       182 SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~l  261 (318)
T KOG0530|consen  182 SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFL  261 (318)
T ss_pred             chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhH
Confidence            777654333222 12     12344567778888999999999998888876 44  2344455555544 444445666


Q ss_pred             HHHHHHHHH------HhccHH---HHHHHHHHHH-hhCCCcHHHHHH
Q 005808          622 LYLRASCYH------AIGEYR---EAIKDYDAAL-DLELDSMEKFVL  658 (676)
Q Consensus       622 ~~~la~~~~------~~g~~~---~A~~~~~~al-~~~p~~~~~~~~  658 (676)
                      +-.+..+|.      ..+.-+   +|...++..- +.+|-....|..
T Consensus       262 la~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~  308 (318)
T KOG0530|consen  262 LAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH  308 (318)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            666666652      222333   5777776654 677765555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.66  E-value=0.019  Score=58.85  Aligned_cols=50  Identities=18%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHh------ccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808          620 ECLYLRASCYHAI------GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD  669 (676)
Q Consensus       620 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  669 (676)
                      .++..+|......      +..+++...|.++++++|+...+|+..+..+.+.+..
T Consensus       253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~  308 (352)
T PF02259_consen  253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES  308 (352)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence            5667777777777      8899999999999999999999999988888776543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00045  Score=62.42  Aligned_cols=112  Identities=22%  Similarity=0.171  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH
Q 005808          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY  588 (676)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  588 (676)
                      ..++..-|+-++..|+|.+|...|+.++..        .|..++                        .++++......+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e------------------------W~eLdk~~tpLl  233 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE------------------------WLELDKMITPLL  233 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH------------------------HHHHHHhhhHHH
Confidence            456777888888888888888888877643        122111                        111111222345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      .+++.|+...|+|-++++.....+...|.+..+++..|.+....=+..+|...|.++++++|.-
T Consensus       234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            5555555666666666666666666666666666666665555555566666666666655543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.62  E-value=0.12  Score=53.77  Aligned_cols=292  Identities=11%  Similarity=0.054  Sum_probs=189.7

Q ss_pred             HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcccHHHHHHHHHHHH
Q 005808          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAI  442 (676)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al  442 (676)
                      ......+.......|.--..|-.-|..-...|..+.+..+|++.+.--|.....|... +.+--..|+.+.-...|++|.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            4444455666677777777888888888888888888888888888888776666543 333445677777777888887


Q ss_pred             HhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHh-
Q 005808          443 QSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK------FKDFNAAVEDLSACVKL-  512 (676)
Q Consensus       443 ~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~~~al~~-  512 (676)
                      .....+   ...|-..-.....++++..-...|++.++..-.....++..-.-+..      ....+++...-...... 
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~  221 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS  221 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence            765544   34555555555677788888888888877543333322222221222      22333333332222210 


Q ss_pred             --------------------CCCC--HHHHHHHH-------HHHHHcccHHHHHHHHHHHHhc--------CcccHHHHH
Q 005808          513 --------------------DKEN--KSAYTYLG-------LALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWG  555 (676)
Q Consensus       513 --------------------~~~~--~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~  555 (676)
                                          .|..  ......+.       .++.......+.+..++..+..        ++.....|.
T Consensus       222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~  301 (577)
T KOG1258|consen  222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR  301 (577)
T ss_pred             hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence                                0000  00000111       1111222233333344444332        122345677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHhcc
Q 005808          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGE  634 (676)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~  634 (676)
                      .....-...|+++...-.|++++--.......|...+......|+..-|...+..+.+.. |+.+.+...-+.+-...|+
T Consensus       302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n  381 (577)
T KOG1258|consen  302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN  381 (577)
T ss_pred             HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence            777777889999999999999988888888999999999999999999998888888764 6677888888888888999


Q ss_pred             HHHHHHHHHHHHhhCCCcHHH
Q 005808          635 YREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       635 ~~~A~~~~~~al~~~p~~~~~  655 (676)
                      +..|...++++..-.|+...+
T Consensus       382 ~~~A~~~lq~i~~e~pg~v~~  402 (577)
T KOG1258|consen  382 FDDAKVILQRIESEYPGLVEV  402 (577)
T ss_pred             HHHHHHHHHHHHhhCCchhhh
Confidence            999999999999888887665

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.60  E-value=0.00016  Score=44.89  Aligned_cols=34  Identities=32%  Similarity=0.644  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      +.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.60  E-value=0.032  Score=58.82  Aligned_cols=177  Identities=15%  Similarity=0.020  Sum_probs=127.2

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcccHHHHHH
Q 005808          470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEE  538 (676)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~------~~~la~~~~----~~g~~~~A~~  538 (676)
                      -.|.-++.+-|.   ....+..+.--.|+-+.+++.+.++.+...-. +-+      |+.....+.    .....+.|.+
T Consensus       178 G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~  254 (468)
T PF10300_consen  178 GLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE  254 (468)
T ss_pred             HHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence            345555666553   23334444445689999999999887632111 111      111111111    2456788999


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      .+....+..|+..-..+..|+++...|+.++|++.|++++.....-    .-.++.+++++.-+.+|++|..++.+..+.
T Consensus       255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999887533322    345788999999999999999999999987


Q ss_pred             CCCCH-HHHHHHHHHHHHhccH-------HHHHHHHHHHHhhC
Q 005808          615 DPSNI-ECLYLRASCYHAIGEY-------REAIKDYDAALDLE  649 (676)
Q Consensus       615 ~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  649 (676)
                      +.-.. ...+..|.++...|+.       ++|...|.++-.+-
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            65533 4556778899999998       88888888876543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.58  E-value=0.15  Score=53.90  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=28.9

Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      .+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus       994 ~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen  994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred             CccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence            35778888888889999999999999998887544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0048  Score=58.10  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=105.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQA  458 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~  458 (676)
                      ..+.-+..+......|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-....+.. .........
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l  212 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            4566777888899999999999999999999999999999999999999999999888776432222211 111111122


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcc
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG  531 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g  531 (676)
                      +.......+. ..+++.+..+|++.+..+.++..+...|+.+.|.+.+-..++.+..  +..+...+-.++...|
T Consensus       213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            2333332222 2345556678888888888999999999999998888888777543  3344444444444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.56  E-value=5.9e-05  Score=46.48  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (676)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45555666666666666666666666665554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.49  E-value=0.0023  Score=65.18  Aligned_cols=98  Identities=11%  Similarity=0.048  Sum_probs=82.7

Q ss_pred             HHHHHH--hcCCHHHHHHHHHHHHcccC---ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005808           42 ELAKLC--SLRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL  116 (676)
Q Consensus        42 ~~~~~~--~~~~y~~Ai~~y~~ai~~~~---~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l  116 (676)
                      .++.+|  -+|+-.+|..||..++-..+   .......+|-.+.+.|...+|-..+-.|+.-.|..+.-+|.+|.++..+
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml  296 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML  296 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence            344455  58999999999999987763   3334778899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCChHH
Q 005808          117 GRKEEALSVWEKGYEHALHQSAD  139 (676)
Q Consensus       117 ~~~~~A~~~~~~al~~~~~~~~~  139 (676)
                      +.+...+-+|..+...+|.+--.
T Consensus       297 ~~~N~S~~~ydha~k~~p~f~q~  319 (886)
T KOG4507|consen  297 GEYNHSVLCYDHALQARPGFEQA  319 (886)
T ss_pred             hhhhhhhhhhhhhhccCcchhHH
Confidence            99999999999998888865544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.48  E-value=0.075  Score=57.52  Aligned_cols=255  Identities=17%  Similarity=0.045  Sum_probs=176.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 005808          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG--  463 (676)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g--  463 (676)
                      +...|..+++.+.+.  .+..+...+|.++..-     .+.+.|+.+|+.+...     ....+.+.+.+|.+|....  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            346777888777554  4577888888888764     6899999999998771     1124557788999998853  


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccH
Q 005808          464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY  533 (676)
Q Consensus       464 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~  533 (676)
                         +...|+.++.++....  ++.+.+.+|.++....   ++..|..+|..+...  .+..+.+.++.+|..    .-+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence               6788999999998875  5677888888887765   678999999998765  677888889988865    3478


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCcH----HHHHHHHHHHHH----cCCHHHH
Q 005808          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHG----LGQHKKA  604 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~----~g~~~~A  604 (676)
                      ..|..++.++.+..  .+.+...++..+... +.++.+.-.+....+..-..+    ............    ..+...+
T Consensus       381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~  458 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA  458 (552)
T ss_pred             HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence            99999999999887  455555555554332 777777666555544322211    111111111111    1255666


Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808          605 IKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (676)
Q Consensus       605 ~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (676)
                      ...+.++..  ..++.+...+|.+|..-    .+++.|...|.++....   ....+.++..+
T Consensus       459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~  516 (552)
T KOG1550|consen  459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMH  516 (552)
T ss_pred             HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHH
Confidence            666666654  34567888889888765    35899999999998876   55556665554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.44  E-value=0.22  Score=54.38  Aligned_cols=269  Identities=17%  Similarity=0.080  Sum_probs=172.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNP-----SAGEA  451 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~  451 (676)
                      +...+.+...+..+...|...+|+...-.+  .+|.- .......+.-+...++..    .+...++.-|     .++..
T Consensus       344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~L  417 (894)
T COG2909         344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRL  417 (894)
T ss_pred             CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchH
Confidence            344778888888889999999998876554  23322 122233344444444433    3333333334     23556


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----H
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALEFEPN--S-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----K  517 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~  517 (676)
                      ....++......++.+|..++.++...-+.  .       ....-..|.+....|+++.|.+..+.++..-|.+     .
T Consensus       418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~  497 (894)
T COG2909         418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI  497 (894)
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence            667788888999999999988887765443  1       2344556788888999999999999999887765     3


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHH--HHHHHHHHH----hcCcCcH
Q 005808          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK--ALECLQQVL----YIDKRFS  585 (676)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~--A~~~~~~al----~~~~~~~  585 (676)
                      .++..+|.+..-.|++++|..+..++.+.....      ..+....+.++..+|+...  ....+...-    ...|...
T Consensus       498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~  577 (894)
T COG2909         498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE  577 (894)
T ss_pred             hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence            466778899999999999999999888774332      3344556778888884333  333333222    2233332


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ......+.++...-+++.+.......++.    .|...   -..+.++.++...|+.++|...+.....+.-+.
T Consensus       578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            33333333333333356665555555543    33322   233578999999999999999998887764443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.016  Score=54.74  Aligned_cols=150  Identities=19%  Similarity=0.123  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-DILHERGIVN  493 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~  493 (676)
                      .+.-+..+.-....|++.+|...|..++...|++.++...++.++...|+.+.|...+...-....... ..+......+
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            445566677788889999999999999999999999999999999999999999888765432222111 1111112233


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcC
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLA  565 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~  565 (676)
                      .+.....+. ..+++.+..+|++..+.+.++..+...|+.+.|.+.+-..++.+..  +..+...+-.++...|
T Consensus       214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            333322222 2344556678999999999999999999999999988888876543  2444444444444444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.38  E-value=0.068  Score=54.56  Aligned_cols=214  Identities=11%  Similarity=0.003  Sum_probs=111.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcC---C
Q 005808          403 IFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNPS-AGEAWKRRGQARAALG---E  464 (676)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g---~  464 (676)
                      .+++++..-+-.+++|+..+..+...++              -+++...|++++..-.. +...++.++..-...-   .
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~  346 (656)
T KOG1914|consen  267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK  346 (656)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence            3455555555556666555555444444              45566666666543221 2222333332222221   2


Q ss_pred             HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcccHHHHHHHHHH
Q 005808          465 SVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAHLK  542 (676)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~  542 (676)
                      ++.....+++++.....++ -+|..+...-.+..-...|...|.++-+.......++..-|.+ |.-.++..-|..+|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence            4444555555555433322 2344444444455556666666666655433332333333322 3345666667777777


Q ss_pred             HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       543 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      .++..++.+.........+...++-..|...|++++..  .+ ....+|..+-..-..-|+...+++.-++-....|
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            77776666666666666666667766777777776654  22 2235555555555566666666665555444433

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.2  Score=50.52  Aligned_cols=214  Identities=15%  Similarity=0.123  Sum_probs=146.7

Q ss_pred             HcccHHHHHHHHHHHHHhCCC------cHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-------C
Q 005808          427 FQRELEAAISDFTEAIQSNPS------AGE--------AWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S  482 (676)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~------~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~  482 (676)
                      ..|-+++|.++-++++.....      ...        .+-.+..+-.-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            457788888888877754221      111        2334566667789999999888777654   343       2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---------
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---------  550 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------  550 (676)
                      +.....+|......|.++.|...|..+.+.....   .....++|.+|...|+.+.--+.++..   .|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence            4467778888888899999999999998874332   234456889999988766555554443   3332         


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---CCCHH
Q 005808          551 -LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID---PSNIE  620 (676)
Q Consensus       551 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~  620 (676)
                       ..+++..|...+.++++.+|...+.+.++....      ....+..++.+..-.|+..++.+...-++++.   |+.+.
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v  523 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV  523 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence             456777888888999999999999999877531      12346678889999999999998887776543   44432


Q ss_pred             ---HHHHHHHHHHHhcc--HHHHHHHHH
Q 005808          621 ---CLYLRASCYHAIGE--YREAIKDYD  643 (676)
Q Consensus       621 ---~~~~la~~~~~~g~--~~~A~~~~~  643 (676)
                         ....+-.+|...|+  .+...+.|.
T Consensus       524 qLws~si~~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  524 QLWSSSILTDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence               22345566777777  444444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0019  Score=61.24  Aligned_cols=95  Identities=19%  Similarity=0.238  Sum_probs=48.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005808          556 HLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (676)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (676)
                      .-|.-|+..++|..|+..|.+.++..-.+    ...|.+.|-+....|+|..|+..+.+++..+|.+..+++.-|.|+..
T Consensus        86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e  165 (390)
T KOG0551|consen   86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE  165 (390)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence            34444555555555555555555432222    23344555555555555555555555555555555555555555555


Q ss_pred             hccHHHHHHHHHHHHhhCC
Q 005808          632 IGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       632 ~g~~~~A~~~~~~al~~~p  650 (676)
                      +.++.+|..+.+..++++.
T Consensus       166 Le~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  166 LERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHHHhhhhhhhH
Confidence            5555555555555444433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.34  E-value=0.015  Score=51.23  Aligned_cols=117  Identities=21%  Similarity=0.071  Sum_probs=83.6

Q ss_pred             HHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          537 EEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       537 ~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~  610 (676)
                      ....++....++..   ..+...++..+...|++++|+..++.++....+.   .-+-.++|.+....|.+++|+..+..
T Consensus        72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            33344444444443   2344667788888999999999999888554432   34567889999999999999988876


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      .....- .+......|.++...|+..+|+..|+++++.+++...
T Consensus       152 ~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         152 IKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             cccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            543211 1345677899999999999999999999998765544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.29  E-value=0.0058  Score=48.65  Aligned_cols=90  Identities=20%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc---CChh----------HHHHHHHHHHHhhCHHHHHHHHHHHH-------HhCCC
Q 005808           42 ELAKLCSLRNWSKAIRILDSLLAQS---YEIQ----------DICNRAFCYSQLELHKHVIRDCDKAL-------QLDPT  101 (676)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~---~~~~----------~~~~ra~~~~~~g~~~~A~~~~~~al-------~~~p~  101 (676)
                      +.-+-+..|-|.+|...+.+|++..   |.-.          +|..++.++..+|+|++++....+||       +++.+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd   94 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD   94 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence            3445578899999999999998865   2211          25678889999999999999888888       44444


Q ss_pred             ----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          102 ----LLQAYILKGCAFSALGRKEEALSVWEKGYE  131 (676)
Q Consensus       102 ----~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  131 (676)
                          |..+.+.+|.++..+|+.++|++.|+.+-+
T Consensus        95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                566889999999999999999999999943

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.29  E-value=0.43  Score=52.66  Aligned_cols=278  Identities=12%  Similarity=0.049  Sum_probs=180.1

Q ss_pred             hhHHHHHHhhccCCC----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcccHHH
Q 005808          365 NKKFCVTRISKSKSI----SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--Y----PEALIGRGTARAFQRELEA  433 (676)
Q Consensus       365 ~~~~~~~~~~~~~~~----~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~  433 (676)
                      ....|+..+....+.    .+..++.+|..++ ...+++.|..++.+++.....  .    ..+.+.++.++.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            334466655544333    3457889999888 678999999999999876533  2    234566788888888766 


Q ss_pred             HHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHhcCCHHH
Q 005808          434 AISDFTEAIQSNPS---A-GEAWKRR--GQARAALGESVEAIQDLSKALEFE--PNSADI----LHERGIVNFKFKDFNA  501 (676)
Q Consensus       434 A~~~~~~al~~~~~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~  501 (676)
                      |+..+++.++....   . ....+.+  .......+++..|++.++......  +.++.+    ....+.+....+..++
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d  197 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD  197 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence            99999999886544   1 2222222  233333479999999999988765  344442    3334666777788888


Q ss_pred             HHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHcccHHHHHHHHHHHH---hc---Cc---c-----------
Q 005808          502 AVEDLSACVKLDK----------ENKSAYTYLGL--ALSSIGEYKKAEEAHLKAI---QL---DR---N-----------  549 (676)
Q Consensus       502 A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~p---~-----------  549 (676)
                      +++.+.++.....          ....+|..+-.  ++...|+++.+...+++.-   +.   .+   .           
T Consensus       198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~  277 (608)
T PF10345_consen  198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI  277 (608)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence            8888888744321          11334444433  4455677666665554432   11   11   0           


Q ss_pred             -----------c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------c---Cc-------------
Q 005808          550 -----------F-----------LEAWGHLTQFYQDLANSEKALECLQQVLYID-------K---RF-------------  584 (676)
Q Consensus       550 -----------~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~---~~-------------  584 (676)
                                 .           .-++..-|......+..++|.+++.++++.-       +   ..             
T Consensus       278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~  357 (608)
T PF10345_consen  278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR  357 (608)
T ss_pred             ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence                       0           1123334455666777778888887776431       1   00             


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC------CHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808          585 ---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DPS------NIECLYLRASCYHAIGEYREAIKDYD  643 (676)
Q Consensus       585 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~------~~~~~~~la~~~~~~g~~~~A~~~~~  643 (676)
                         ....+..+.+.+-.+++..|...++.+...   .|.      .+..++..|..+...|+.+.|..+|.
T Consensus       358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence               122456678888899999999988877654   222      36788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.29  E-value=0.016  Score=61.03  Aligned_cols=114  Identities=19%  Similarity=0.068  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHH
Q 005808          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALEC  573 (676)
Q Consensus       498 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~  573 (676)
                      ..+.|.+.+....+..|+..-.++..|+++...|+.++|++.+++++......    .-.++.++.++..+++|++|..+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            44555555555555555555555555555555555555555555555322111    22345555555556666666666


Q ss_pred             HHHHHhcCcC-cHHHHHHHHHHHHHcCCH-------HHHHHHHHHh
Q 005808          574 LQQVLYIDKR-FSKAYHLRGLLLHGLGQH-------KKAIKDLSSG  611 (676)
Q Consensus       574 ~~~al~~~~~-~~~~~~~la~~~~~~g~~-------~~A~~~~~~a  611 (676)
                      +.+..+.+.- .....+..|.++...|+.       ++|...|.++
T Consensus       328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            6655554332 223334445555555555       5555555544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.28  E-value=0.31  Score=53.25  Aligned_cols=234  Identities=15%  Similarity=0.015  Sum_probs=153.3

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--Y-------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-  448 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-  448 (676)
                      .+|...+..|+.....+++.+|..++.++...-+.  .       .......|.+....|++++|+++.+.++..-|.+ 
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            34677788899999999999999999988764433  1       3555677888899999999999999999887765 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--HHHHHHHHHHHHhcCCH--HHHHHHHHHHHH----h
Q 005808          449 ----GEAWKRRGQARAALGESVEAIQDLSKALEFEPN----S--ADILHERGIVNFKFKDF--NAAVEDLSACVK----L  512 (676)
Q Consensus       449 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~~~~--~~A~~~~~~al~----~  512 (676)
                          ..+...+|.+..-.|++++|..+...+.+....    .  ..+....+.++..+|+.  .+....+...-.    .
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q  572 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ  572 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence                346777889999999999999999888776321    1  22444557778888832  333333322221    2


Q ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----Cccc--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-
Q 005808          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL----DRNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-  584 (676)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-  584 (676)
                      .|-........+.++...-+++.+..-....++.    .|..  . -.++.++.++...|+.++|...+........+. 
T Consensus       573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~  652 (894)
T COG2909         573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ  652 (894)
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence            2333333333333333333355555555554443    2322  2 223588999999999999999888876543221 


Q ss_pred             H------HHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          585 S------KAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       585 ~------~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      +      .+..........+|++.+|.....+..
T Consensus       653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            1      112223344456789999988887743

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.24  E-value=0.00069  Score=41.90  Aligned_cols=31  Identities=39%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 005808          104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (676)
Q Consensus       104 ~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~  134 (676)
                      ++|+.+|.+|..+|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4566666666666666666666666644444

...

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.062  Score=58.80  Aligned_cols=242  Identities=19%  Similarity=0.116  Sum_probs=149.3

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      -..+..|-.+|.+.+..|...+|++.|-++     +++..+.....+..+.|.|++-+.++..+.+.... +.+-..+..
T Consensus      1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~ 1174 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIF 1174 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHH
Confidence            345778888888888888888888888765     55677777788888888888888887776654322 122223344


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      +|.+.++..+-.+.+     ..|+... ....|.-++..|.|+.|.-+|..        ..-|..++..+..+|+|..|.
T Consensus      1175 AyAkt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred             HHHHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHH
Confidence            445555544433322     2343332 33456666666666666555532        223455666666666666666


Q ss_pred             HHHHHHHhcC-------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q 005808          538 EAHLKAIQLD-------------------------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (676)
Q Consensus       538 ~~~~~al~~~-------------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  592 (676)
                      ...+++-...                         --+.+-+-.+...|...|-+++-+..++.++.+...+-..+..+|
T Consensus      1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred             HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence            6555543211                         001333455667788888899998888888887777777778888


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCC--C------CCHHHHHHHHHHHHHhccHHHHHH
Q 005808          593 LLLHGLGQHKKAIKDLSSGLGID--P------SNIECLYLRASCYHAIGEYREAIK  640 (676)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~--p------~~~~~~~~la~~~~~~g~~~~A~~  640 (676)
                      .+|.+- ++++-.++++-....-  |      +....|..+..+|.+-..|+.|.-
T Consensus      1321 iLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1321 ILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred             HHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            877764 4555555555443321  1      224567777777777777776643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.17  E-value=0.013  Score=51.05  Aligned_cols=117  Identities=15%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      .+...|......|+...++..+.+++.......-.-..-      ..-.......+...      ...+...++..+...
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~   75 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEA   75 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            344556666778889999999999987653321000000      00011111111111      123445566777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (676)
                      |++++|+..+.+++..+|.+..++..+..+|...|+...|+..|+++..
T Consensus        76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777776643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.16  E-value=0.16  Score=50.40  Aligned_cols=193  Identities=20%  Similarity=0.124  Sum_probs=104.2

Q ss_pred             HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cC
Q 005808          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FK  497 (676)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~  497 (676)
                      ...+++..+...+..+-..  .+......++.+|...    .+..+|..+|..+..  ..++...+.+|.+|..    ..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~  127 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPL  127 (292)
T ss_pred             cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCccc
Confidence            3456677777777766552  2234555566555443    345666666664333  2345566666666655    33


Q ss_pred             CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          498 DFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (676)
Q Consensus       498 ~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  576 (676)
                      +..+|..+|.++....-.. ......++.++..-. ...+.                          ..+...|...|.+
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~--------------------------~~~~~~A~~~~~~  180 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV--------------------------AYDDKKALYLYRK  180 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc--------------------------cHHHHhHHHHHHH
Confidence            5666666666665553222 122444444443321 00000                          0011345555555


Q ss_pred             HHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc---------------cHHH
Q 005808          577 VLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---------------EYRE  637 (676)
Q Consensus       577 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~  637 (676)
                      +-...  ++.+...+|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|               +...
T Consensus       181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~  255 (292)
T COG0790         181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQ  255 (292)
T ss_pred             HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHH
Confidence            54433  45666666666644    2366777777777766655  56666666 555444               7777


Q ss_pred             HHHHHHHHHhhCCCcHH
Q 005808          638 AIKDYDAALDLELDSME  654 (676)
Q Consensus       638 A~~~~~~al~~~p~~~~  654 (676)
                      |..++..+....+....
T Consensus       256 a~~~~~~~~~~~~~~~~  272 (292)
T COG0790         256 ALEWLQKACELGFDNAC  272 (292)
T ss_pred             HHHHHHHHHHcCChhHH
Confidence            78888877776655444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.16  E-value=0.00041  Score=66.05  Aligned_cols=95  Identities=27%  Similarity=0.384  Sum_probs=87.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 005808          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (676)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  465 (676)
                      ..+...+..|.+++|+..|..++.++|.....+...+.++..+++...|+..+..++.++|+....+-..+.....+|+|
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 005808          466 VEAIQDLSKALEFEP  480 (676)
Q Consensus       466 ~~A~~~~~~al~~~p  480 (676)
                      ++|...+..+.+++-
T Consensus       199 e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  199 EEAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999988764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.13  E-value=0.3  Score=47.79  Aligned_cols=122  Identities=12%  Similarity=0.009  Sum_probs=74.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhC----CC---c-------
Q 005808          392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----PS---A-------  448 (676)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----~~---~-------  448 (676)
                      ..+|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.+.-    +.   .       
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46788888888888875543    222    345667777777777 8888888888877652    11   0       


Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005808          449 GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (676)
                      ..++..++.++...+.++   +|...++.+-...|+.+.++...-.+....++.+.+.+.+.+++...
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            224555666666655543   34444444555556656665555555555666666666666666553

It is also involved in sporulation [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.11  E-value=0.37  Score=48.42  Aligned_cols=144  Identities=18%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh---------cCc---Cc
Q 005808          520 YTYLGLALSSIGE-YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE--CLQQVLY---------IDK---RF  584 (676)
Q Consensus       520 ~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~---------~~~---~~  584 (676)
                      +..-|.-+...|. -++|+..++.+++..|.+...-...-..  -...|.+|+.  .+.+.+.         +.|   .+
T Consensus       382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e  459 (549)
T PF07079_consen  382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE  459 (549)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence            3445677788887 8899999999999988876443222111  1122333322  2222221         222   23


Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808          585 SKAYHLR--GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (676)
Q Consensus       585 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (676)
                      .+.-..+  |..++..|+|.++.-+-.=..+..| ++.++..+|.++....+|.+|..++...-- +.+-.+.....+++
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~  537 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALA  537 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHH
Confidence            3343333  5567789999999988888888999 699999999999999999999999875422 22223445555555


Q ss_pred             HHHhh
Q 005808          663 FYQVL  667 (676)
Q Consensus       663 ~~~~~  667 (676)
                      +-++-
T Consensus       538 lCqKh  542 (549)
T PF07079_consen  538 LCQKH  542 (549)
T ss_pred             HHHHh
Confidence            54443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.10  E-value=0.48  Score=49.50  Aligned_cols=295  Identities=13%  Similarity=-0.035  Sum_probs=189.8

Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          367 KFCVTRISKSKSISVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAI  442 (676)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (676)
                      .....+....-|.+.+.|...-.... ..|+.+.-...|+++......+   ...|-........++++..-...|++.+
T Consensus        99 ~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil  178 (577)
T KOG1258|consen   99 VKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL  178 (577)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            44555666677788888776544443 4578888888899998765443   3455555555577889999999999998


Q ss_pred             HhCCCcHHHHHHHHHHHHHc----------------------------------------------CCHHHHHHHHHHH-
Q 005808          443 QSNPSAGEAWKRRGQARAAL----------------------------------------------GESVEAIQDLSKA-  475 (676)
Q Consensus       443 ~~~~~~~~~~~~la~~~~~~----------------------------------------------g~~~~A~~~~~~a-  475 (676)
                      +..-.....++..-.-+...                                              +.++++...+.+. 
T Consensus       179 eiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~  258 (577)
T KOG1258|consen  179 EIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV  258 (577)
T ss_pred             hhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH
Confidence            86432221111100000000                                              0111111111111 


Q ss_pred             -----------------------Hhc-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          476 -----------------------LEF-----EPN---SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       476 -----------------------l~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                                             +..     .|.   +...|......-...|+++...-.+++++--.......|...+
T Consensus       259 ~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~  338 (577)
T KOG1258|consen  259 SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYA  338 (577)
T ss_pred             HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence                                   100     111   1224555556666778888888888888777777778888888


Q ss_pred             HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q 005808          525 LALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK  603 (676)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  603 (676)
                      ......|+.+-|...+..+.+.. |..+.....-+.+-...|++..|..++++..+..|+...+-...+......|+.+.
T Consensus       339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~  418 (577)
T KOG1258|consen  339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLED  418 (577)
T ss_pred             HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhh
Confidence            88888888888887777777664 55577777777788888899999999999888778877777777777778888887


Q ss_pred             HH---HHHHHhhcCCCCC---HHHHHHHHHH-HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808          604 AI---KDLSSGLGIDPSN---IECLYLRASC-YHAIGEYREAIKDYDAALDLELDSMEKFVLQCL  661 (676)
Q Consensus       604 A~---~~~~~al~~~p~~---~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  661 (676)
                      +.   ..+.....-..+.   ...+...++. +.-.++.+.|...+.++++..|++...+..+..
T Consensus       419 ~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~  483 (577)
T KOG1258|consen  419 ANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIR  483 (577)
T ss_pred             hhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence            77   3333333221111   2333444443 345578899999999999999999887655443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.08  E-value=0.0024  Score=43.66  Aligned_cols=42  Identities=26%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005808           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (676)
Q Consensus        71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~  112 (676)
                      +++.+|.+++++|+|++|...++.+|+++|++..|.-....+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            467899999999999999999999999999999877665443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.08  E-value=0.00098  Score=41.20  Aligned_cols=32  Identities=34%  Similarity=0.682  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .+|+.+|.+|..+|++++|..+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46788888888888888888888888888874

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.05  E-value=0.014  Score=50.85  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      ..+...++..+...|++++|+..+++++..+|-+..++..+..+|...|+..+|+..|+++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            345667888888999999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.05  E-value=0.044  Score=48.41  Aligned_cols=95  Identities=20%  Similarity=0.111  Sum_probs=53.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (676)
                      ..++..+...|++++|...++.++....+.   .-+-.+++.+....|.+++|+..+....... -.+......|.++..
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~  171 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH
Confidence            345566666666666666666666443222   2244556666666666666666665432110 012233445666666


Q ss_pred             cccHHHHHHHHHHHHhcCc
Q 005808          530 IGEYKKAEEAHLKAIQLDR  548 (676)
Q Consensus       530 ~g~~~~A~~~~~~al~~~p  548 (676)
                      .|+-++|+..|.+++...+
T Consensus       172 kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         172 KGDKQEARAAYEKALESDA  190 (207)
T ss_pred             cCchHHHHHHHHHHHHccC
Confidence            6666666666666666653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.05  E-value=0.098  Score=55.17  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=86.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  534 (676)
                      .|.-+...|+++.|+.+|-.+-        .+............|.+|+..++..-.... ....|-.++.-|...|+|+
T Consensus       712 wg~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe  782 (1636)
T KOG3616|consen  712 WGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFE  782 (1636)
T ss_pred             HhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHH
Confidence            4555666677777777665431        122223333445566666666654433221 1223444566666677777


Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHH-------
Q 005808          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIK-------  606 (676)
Q Consensus       535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~-------  606 (676)
                      .|.+.|.++-.        ...-..+|-+.|++..|.+.-.+..  .|.. ...|...+.-+-+.|+|.+|.+       
T Consensus       783 ~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~  852 (1636)
T KOG3616|consen  783 IAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE  852 (1636)
T ss_pred             HHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence            77766655321        1223345555666666666555542  2221 2334444444444444444433       


Q ss_pred             ------HHHHhh----------cCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          607 ------DLSSGL----------GIDPSN-IECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       607 ------~~~~al----------~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                            .|.+.-          +..|+. .+.+..+|.-+...|+...|...|-++
T Consensus       853 p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  853 PDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             chHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence                  332210          112221 245666777777777777776666544

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.94  E-value=0.085  Score=52.77  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808          552 EAWGHLTQFYQDLANSEKALECLQQVLYID  581 (676)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (676)
                      .++..+.....+.|..+.|+..++-.++.+
T Consensus       155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  155 YVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            445566666777888888888888777764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.93  E-value=0.46  Score=46.52  Aligned_cols=222  Identities=16%  Similarity=0.087  Sum_probs=138.5

Q ss_pred             HHHcccHHHHHHHHHHHHHhC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC----C---CC------
Q 005808          425 RAFQRELEAAISDFTEAIQSN----PSA----GEAWKRRGQARAALG-ESVEAIQDLSKALEFE----P---NS------  482 (676)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~----~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----p---~~------  482 (676)
                      ....|+++.|..++.++-...    |+.    ...+++.|......+ +++.|..+++++.++-    +   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356899999999999987654    322    356778888888899 9999999999998772    1   11      


Q ss_pred             -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808          483 -ADILHERGIVNFKFKDFN---AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (676)
Q Consensus       483 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  558 (676)
                       ..++..++.+|...+.++   +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+-....+....
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l  162 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence             236778889998887654   4555666666667888887766666666689999999999999886542211111111


Q ss_pred             HHH--HHcCCHHHHHHHHHHHHhc--CcCcHHHHHHH---HHHHHHcC--C------HHHHHHHHHHhhcC--CCCCH--
Q 005808          559 QFY--QDLANSEKALECLQQVLYI--DKRFSKAYHLR---GLLLHGLG--Q------HKKAIKDLSSGLGI--DPSNI--  619 (676)
Q Consensus       559 ~~~--~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~al~~--~p~~~--  619 (676)
                      ..+  ........|...+...+..  .|.... +...   ..++...+  +      .+.....+....+.  .|-.+  
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            111  1234455677777666542  232211 2221   22222222  2      22222333322111  12222  


Q ss_pred             -----HHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          620 -----ECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       620 -----~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                           ..+...|...++.++|.+|..+|+-++.
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence                 3445678888999999999999997763

It is also involved in sporulation [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.91  E-value=0.51  Score=46.73  Aligned_cols=170  Identities=20%  Similarity=0.078  Sum_probs=114.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 005808          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-  461 (676)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-  461 (676)
                      .+......+++..|...+..+-..  ..+.....++.++...    .+..+|..+|..+.  ....+.+.+.+|.+|.. 
T Consensus        47 ~~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G  122 (292)
T COG0790          47 NGAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANG  122 (292)
T ss_pred             ccccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcC
Confidence            334445678999999999988662  2346778888887664    46888999999554  45677888899999987 


Q ss_pred             ---cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 005808          462 ---LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS-  529 (676)
Q Consensus       462 ---~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-  529 (676)
                         ..+..+|..+|.++....-.. ......++.+|..-.       +...|...+.++....  ++.+...+|.+|.. 
T Consensus       123 ~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G  200 (292)
T COG0790         123 RGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG  200 (292)
T ss_pred             CCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence               458999999999999886433 344777888877642       2225666666665553  55566666655543 


Q ss_pred             ---cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808          530 ---IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (676)
Q Consensus       530 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  565 (676)
                         ..++.+|..+|.++-+...  ....+.++ ++...|
T Consensus       201 ~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         201 LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence               2356666666666665544  55555555 444334

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.91  E-value=0.58  Score=56.64  Aligned_cols=280  Identities=14%  Similarity=0.096  Sum_probs=169.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCC
Q 005808          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG-QARAALGE  464 (676)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~g~  464 (676)
                      ..-..+...|++..|..+|+++++.+|+....+...-...+..|.+...+...+-.....++...-+..++ .+....++
T Consensus      1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred             HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc
Confidence            34445566799999999999999999988877777777888888888888877766655555554444443 22345555


Q ss_pred             HHHHHHHHH--------------HHHhcCCCCHHHH-HHHHHH----------HHhcCCHHHHHHHHHHHHHh-------
Q 005808          465 SVEAIQDLS--------------KALEFEPNSADIL-HERGIV----------NFKFKDFNAAVEDLSACVKL-------  512 (676)
Q Consensus       465 ~~~A~~~~~--------------~al~~~p~~~~~~-~~la~~----------~~~~~~~~~A~~~~~~al~~-------  512 (676)
                      ++.-..+..              ..+.....+.-.. ..+...          ....|.+..+.++.-++...       
T Consensus      1534 wD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1534 WDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred             hhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            555444422              0111111111100 000000          00111223333332222111       


Q ss_pred             ------CCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---C----cccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          513 ------DKE-----NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL---D----RNFLEAWGHLTQFYQDLANSEKALECL  574 (676)
Q Consensus       513 ------~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~~~~~~A~~~~  574 (676)
                            .++     +..-|.+....-....+..+-+-.+++++-.   +    ..-.+.|...|++....|+++.|...+
T Consensus      1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred             HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence                  111     1223333333222223344444455554322   2    233789999999999999999999999


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CC----------C------HHHHHHHHHHHHHhccH--
Q 005808          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PS----------N------IECLYLRASCYHAIGEY--  635 (676)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--  635 (676)
                      -.+.+..  -+.++...|..+...|+-..|+..+++.+..+ |+          .      ..+.+.++......|++  
T Consensus      1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred             Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence            9988766  47889999999999999999999999999542 22          1      12344455555556664  


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 005808          636 REAIKDYDAALDLELDSMEKFVLQCLAFYQVLF  668 (676)
Q Consensus       636 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  668 (676)
                      .+-+++|..+.++.|...+.++.++ .||.+++
T Consensus      1772 ~~ilk~Y~~~~ail~ewe~~hy~l~-~yy~kll 1803 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLG-KYYDKLL 1803 (2382)
T ss_pred             HHHHHHHHHHHHHcccccCceeeHH-HHHHHHh
Confidence            4567899999999998888888888 3444443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.87  E-value=0.5  Score=47.38  Aligned_cols=240  Identities=10%  Similarity=-0.058  Sum_probs=135.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (676)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  482 (676)
                      ++++++.-.|-.+++|+.........++-+.|+...++++...|.   ....++.+|...++.+....+|+++.+.-.  
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~--  364 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK--  364 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence            345555555555666666666666666666666666665554443   444555666555555555555555432100  


Q ss_pred             HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808          483 ADILHERGIVNF---KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (676)
Q Consensus       483 ~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  559 (676)
                        .-+..+..-.   ..|+++...+++-+-.   ....-+|..+-....+..-.+.|...|.++-+..-....++..-|.
T Consensus       365 --r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~  439 (660)
T COG5107         365 --RKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF  439 (660)
T ss_pred             --HHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence              0000000000   0122211111111111   1122334434444444555667777777776554233344433333


Q ss_pred             H-HHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhccHH
Q 005808          560 F-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYR  636 (676)
Q Consensus       560 ~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~  636 (676)
                      + +...|++..|..+|+-.+...|+++......-..+...++-..|...|+.++..-.+.  ..+|-.+...-..-|+..
T Consensus       440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN  519 (660)
T COG5107         440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN  519 (660)
T ss_pred             HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence            3 4457888888888888888888887776667777788888888888888777643332  456666666666778888


Q ss_pred             HHHHHHHHHHhhCCCc
Q 005808          637 EAIKDYDAALDLELDS  652 (676)
Q Consensus       637 ~A~~~~~~al~~~p~~  652 (676)
                      .+...-++..++.|..
T Consensus       520 ~v~sLe~rf~e~~pQe  535 (660)
T COG5107         520 NVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHhHHHHHHHHcCcH
Confidence            8877777777777765

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.86  E-value=0.094  Score=52.46  Aligned_cols=145  Identities=13%  Similarity=0.073  Sum_probs=100.0

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHc------------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808          403 IFDQILKEDPMYPEALIGRGTARAFQ------------RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (676)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  470 (676)
                      -|++.++.+|.+..+|..+....-..            .-.+.-+.+|++|++.+|++...+..+-.......+.++...
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            35555666666666666655443332            124556778888888888888888887777777778888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCC----C--------------CHHHHHHHHHHHHH
Q 005808          471 DLSKALEFEPNSADILHERGIVNFK---FKDFNAAVEDLSACVKLDK----E--------------NKSAYTYLGLALSS  529 (676)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~----~--------------~~~~~~~la~~~~~  529 (676)
                      -+++++..+|.+...|..+-.....   .-.++.....|.+++..-.    .              ...++..++....+
T Consensus        87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~  166 (321)
T PF08424_consen   87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ  166 (321)
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888888777665544433   2346666666666664311    0              12355667778888


Q ss_pred             cccHHHHHHHHHHHHhcC
Q 005808          530 IGEYKKAEEAHLKAIQLD  547 (676)
Q Consensus       530 ~g~~~~A~~~~~~al~~~  547 (676)
                      .|..+.|+..++-.++.+
T Consensus       167 aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  167 AGYTERAVALWQALLEFN  184 (321)
T ss_pred             CCchHHHHHHHHHHHHHH
Confidence            999999999999999875

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.84  E-value=0.0017  Score=40.67  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808          105 AYILKGCAFSALGRKEEALSVWEKGYEH  132 (676)
Q Consensus       105 a~~~~g~~~~~l~~~~~A~~~~~~al~~  132 (676)
                      ++..+|.+|..+|++++|+.+|+++|++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888888888888888887543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.75  E-value=0.0037  Score=38.19  Aligned_cols=33  Identities=36%  Similarity=0.654  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ++++.+|.++...|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367888888888888888888888888888864

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.037  Score=57.37  Aligned_cols=94  Identities=21%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCCh--hH-----HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005808           42 ELAKLCSLRNWSKAIRILDSLLAQSYEI--QD-----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (676)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~--~~-----~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  114 (676)
                      ..+++|+.++|..++++|...+.--+..  ..     .-+++.||+.+.+.+.|++.+..|-+.||.++--.+..-.+..
T Consensus       360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~  439 (872)
T KOG4814|consen  360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL  439 (872)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            4567899999999999999987643211  11     3578889999999999999999999999999998888888999


Q ss_pred             HcCCHHHHHHHHHHHHhhccC
Q 005808          115 ALGRKEEALSVWEKGYEHALH  135 (676)
Q Consensus       115 ~l~~~~~A~~~~~~al~~~~~  135 (676)
                      ..|+-++|+.+..+.....-+
T Consensus       440 ~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  440 AEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             HhcchHHHHHHHHHHHhhhcc
Confidence            999999999999888654433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.55  E-value=0.14  Score=51.91  Aligned_cols=141  Identities=16%  Similarity=0.036  Sum_probs=70.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCc---HHHHHHHHHHH
Q 005808          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------------------------PSA---GEAWKRRGQAR  459 (676)
Q Consensus       409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~---~~~~~~la~~~  459 (676)
                      ..+|-+.+++..++.++..+|+...|.+.+++++-..                          +.|   ..+.+.....+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            4556666666666666666666666666666554211                          011   12334445555


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccc
Q 005808          460 AALGESVEAIQDLSKALEFEPN-SAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYTYLGLALSSIGE  532 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~  532 (676)
                      .+.|-+..|+++.+-.+.++|. ++- +++.+-....+.++++--+..++........     -+...+..+.++...++
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~  193 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK  193 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence            5566666666666666666665 443 2333333334455555555555543331110     12233444455555554


Q ss_pred             H---------------HHHHHHHHHHHhcCcc
Q 005808          533 Y---------------KKAEEAHLKAIQLDRN  549 (676)
Q Consensus       533 ~---------------~~A~~~~~~al~~~p~  549 (676)
                      .               +.|...+.+|+...|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  194 EESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             ccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            4               5555555555555444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.51  E-value=0.076  Score=53.72  Aligned_cols=171  Identities=14%  Similarity=-0.093  Sum_probs=88.1

Q ss_pred             HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HH
Q 005808          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LE  552 (676)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  552 (676)
                      +..+|-+.+++..++.++..+|+...|.+.+++++-.........+.....-...|..     .+   --..+.|   -.
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~-----rL---~~~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC-----RL---DYRRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc-----cc---CCccccchHHHH
Confidence            3456666777777777777777777777766666532111100000000000000000     00   0001112   23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-cHHH-HHHHHHHHHHcCCHHHHHHHHHHhhcCCC-----CCHHHHHHH
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKR-FSKA-YHLRGLLLHGLGQHKKAIKDLSSGLGIDP-----SNIECLYLR  625 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l  625 (676)
                      +.+.....+.+.|-+..|.++.+-.+.++|. ++.. ...+-....+.++|+--+..++.......     .-|...+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            3444555666667777777777777777775 5433 33333344455666555555555443111     123455666


Q ss_pred             HHHHHHhccH---------------HHHHHHHHHHHhhCCCcHH
Q 005808          626 ASCYHAIGEY---------------REAIKDYDAALDLELDSME  654 (676)
Q Consensus       626 a~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~  654 (676)
                      +.++...++.               +.|...+.+|+...|.-..
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~  228 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV  228 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence            6677777776               7888888888887775444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.50  E-value=0.0046  Score=37.73  Aligned_cols=30  Identities=17%  Similarity=0.202  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 005808          105 AYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (676)
Q Consensus       105 a~~~~g~~~~~l~~~~~A~~~~~~al~~~~  134 (676)
                      |++++|.++..+|++++|+..|++.++..|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            455555555555555555555555544444

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.49  E-value=0.29  Score=45.53  Aligned_cols=189  Identities=11%  Similarity=0.011  Sum_probs=110.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----CCcHH-HHHHHHHHHHHc
Q 005808          393 NEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAGE-AWKRRGQARAAL  462 (676)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~-~~~~la~~~~~~  462 (676)
                      ...+.++|+.-|++++++.+..    ..++-.+..+.+.+|++++-+..|.+.+..-     .+..+ ....+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            3458999999999999988775    3467778889999999999999999886531     11111 111121111222


Q ss_pred             CCHHHHHHHHHHHHhc--CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHH
Q 005808          463 GESVEAIQDLSKALEF--EPNSADIL----HERGIVNFKFKDFNAAVEDLSACVKLDKEN------------KSAYTYLG  524 (676)
Q Consensus       463 g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la  524 (676)
                      .+.+--...|+..+..  +..+...|    ..+|.+|+..+.|..-.+.+++.-......            .+++..-.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            3333333344433322  12233333    357888888887777766666654432111            13344445


Q ss_pred             HHHHHcccHHHHHHHHHHHHhcCccc--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808          525 LALSSIGEYKKAEEAHLKAIQLDRNF--LEAWG----HLTQFYQDLANSEKALECLQQVLYID  581 (676)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~  581 (676)
                      .+|..+.+..+-...|++++.+...-  |.+.-    .=|..+.+.|++++|-..|-.+++..
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            56666667777777777777653322  22211    12345667778888877777776653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.48  E-value=0.0068  Score=56.84  Aligned_cols=69  Identities=20%  Similarity=0.025  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 005808           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK  141 (676)
Q Consensus        73 ~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~  141 (676)
                      .+.|.-..+.|+.++|.+.+..|+.++|++++++...|.....-++.-+|-.+|-+||.++|.+++++-
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            455666778899999999999999999999999999999999999999999999999999999988754

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0048  Score=59.36  Aligned_cols=104  Identities=16%  Similarity=0.042  Sum_probs=88.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc-----------CC---------hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 005808           42 ELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (676)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-----------~~---------~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~  101 (676)
                      ..++.|++++|+.|..-|.++...-           ++         ...+.|.+.|-++++.+..|+..+..++..++.
T Consensus       228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s  307 (372)
T KOG0546|consen  228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS  307 (372)
T ss_pred             cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence            4567899999999999999885311           12         011568899999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHH
Q 005808          102 LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE  145 (676)
Q Consensus       102 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~  145 (676)
                      .+++|+++|..+..+.++++|...++.+....|+++.-...+..
T Consensus       308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~  351 (372)
T KOG0546|consen  308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN  351 (372)
T ss_pred             hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence            99999999999999999999999999999999988766555543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.19  Score=51.60  Aligned_cols=241  Identities=16%  Similarity=0.072  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLS  473 (676)
Q Consensus       398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~  473 (676)
                      +...+.+.......|+++...+..+..+...|+.+.|+..++..+.  +..    .-.++.+|+++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4444555555567888888888888888888887778888777765  221    2245567888888888888888888


Q ss_pred             HHHhcCCCCHHHHHHHH-HHHHh--------cCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808          474 KALEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSAC---VKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (676)
Q Consensus       474 ~al~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~a---l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (676)
                      ...+...-..-.|..++ -+++.        .|+-+.|-.+++..   +...|.+...-..         -..++.++-.
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~  398 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVK  398 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhc
Confidence            88776654444444443 33322        22333333333222   2222222111000         0111111111


Q ss_pred             HHHhcCcccHH--HHHHHHHHHHH--cCCHHHHHHHHHHHH---hc-CcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          542 KAIQLDRNFLE--AWGHLTQFYQD--LANSEKALECLQQVL---YI-DKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       542 ~al~~~p~~~~--~~~~la~~~~~--~~~~~~A~~~~~~al---~~-~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      +.- .++..+.  .++.++.++..  ....++.. -++...   +. ++++. --+..+|.++..+|+...|..+|...+
T Consensus       399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~  476 (546)
T KOG3783|consen  399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV  476 (546)
T ss_pred             ccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            110 1111111  22333333322  12222222 111111   11 22222 346678999999999999999999888


Q ss_pred             cC---CCC----CHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCC
Q 005808          613 GI---DPS----NIECLYLRASCYHAIGE-YREAIKDYDAALDLELD  651 (676)
Q Consensus       613 ~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~  651 (676)
                      +.   ...    -|.+++.+|..|..+|. ..++..++.+|-+...+
T Consensus       477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            43   111    26799999999999999 99999999999887644

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.36  E-value=0.0036  Score=39.19  Aligned_cols=29  Identities=34%  Similarity=0.544  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          621 CLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      ++..+|.+|..+|++++|+.+|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            35677777777777777777777755443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.35  E-value=0.0094  Score=58.44  Aligned_cols=86  Identities=14%  Similarity=0.227  Sum_probs=74.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHcccCChhH-----------H--------HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh
Q 005808           44 AKLCSLRNWSKAIRILDSLLAQSYEIQD-----------I--------CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ  104 (676)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-----------~--------~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~  104 (676)
                      ..+|.+|+|..|+.-|..|++++.....           .        -.+..||+++++-+-|+...-+.|.++|.++-
T Consensus       184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr  263 (569)
T PF15015_consen  184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR  263 (569)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence            3579999999999999999886621111           1        37788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          105 AYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus       105 a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                      -|++.+.++..+.+|.+|-+.+--+
T Consensus       264 nHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  264 NHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887766

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.32  E-value=0.017  Score=61.66  Aligned_cols=122  Identities=21%  Similarity=0.257  Sum_probs=99.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccC-----ChhHHHHHHHHHHHh--hCHHHHHHHHHHHHHhCC
Q 005808           28 RVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-----EIQDICNRAFCYSQL--ELHKHVIRDCDKALQLDP  100 (676)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-----~~~~~~~ra~~~~~~--g~~~~A~~~~~~al~~~p  100 (676)
                      ++.-++..+-.+..+.+..|+.++|.+|..-|..++.+.|     ....++|++.|+..+  |+|.+++.+|.-|+...|
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p  124 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP  124 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc
Confidence            3455566667777899999999999999999999988763     122278999988876  699999999999999999


Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 005808          101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (676)
Q Consensus       101 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~  149 (676)
                      ...++++.++.+|..+++++-|++...-.....|..........++...
T Consensus       125 ~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  125 RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999877778888886554433344333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.20  E-value=0.026  Score=38.67  Aligned_cols=40  Identities=35%  Similarity=0.527  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      +.++.+|..+.++|+|++|..+.+.+++++|++..+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3567777778888888888888888888888877764433

>smart00028 TPR Tetratricopeptide repeats

Probab=96.18  E-value=0.01  Score=35.67  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 005808           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (676)
Q Consensus        71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~  101 (676)
                      .+.++|.++..+|++++|+..+++++.++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4566777777777777777777777777665

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10941 hypothetical protein; Provisional

Probab=96.16  E-value=0.047  Score=52.40  Aligned_cols=71  Identities=14%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      ...++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            34556666777777777777777777777777777777777777777777777777777777777776543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.13  E-value=0.11  Score=44.70  Aligned_cols=86  Identities=17%  Similarity=0.119  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ...++.........++.+++..++..+--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            44566666666777777777777777777777777777777777778888888888877777777777777777777777


Q ss_pred             HcCCHH
Q 005808          461 ALGESV  466 (676)
Q Consensus       461 ~~g~~~  466 (676)
                      .+|+.+
T Consensus        90 ~~~D~~   95 (160)
T PF09613_consen   90 ALGDPS   95 (160)
T ss_pred             HcCChH
Confidence            776643

>PRK10941 hypothetical protein; Provisional

Probab=96.12  E-value=0.061  Score=51.63  Aligned_cols=70  Identities=16%  Similarity=0.082  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 005808           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK  141 (676)
Q Consensus        72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~  141 (676)
                      ..|.-.+|.+.++++.|+..++..+.++|+++.-+--+|.+|.++|.+..|...++.-++.+|+.+....
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            4577789999999999999999999999999987878999999999999999999999999999886643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.05  E-value=0.009  Score=53.77  Aligned_cols=60  Identities=15%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 005808           77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (676)
Q Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~  136 (676)
                      ....+.|+.+.|.+.+.+|+++-|.|...|+|+|.-..+.|+++.|.+.|++.++++|+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345677899999999999999999999999999999999999999999999998888864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.04  E-value=1.1  Score=47.46  Aligned_cols=179  Identities=13%  Similarity=0.050  Sum_probs=113.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL----------IGRGTARAFQRELEAAISDFTEAIQSNP  446 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (676)
                      +..++..|..+|...+..-.++.|...|-+.-. .|. ....          ...+.+-..-|.+++|...|-.+-..+ 
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-  764 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-  764 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence            455689999999998888888888887776522 111 1111          233444445588888888776542211 


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                             ....++...|+|-...++++..-.-..+  -..++..+|..+..+..|++|.++|...-.        .-.+.
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~  829 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQI  829 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHH
Confidence                   1234556677777666666543222111  145788899999999999999988876432        12345


Q ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (676)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (676)
                      .+++...+|++-..    ....-|++...+-.+|.++...|.-++|.+.|-+.
T Consensus       830 ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  830 ECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             HHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence            66666666665433    33345677777777888888888888887776553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.03  E-value=0.064  Score=54.25  Aligned_cols=94  Identities=9%  Similarity=0.001  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHhh
Q 005808          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGL  612 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al  612 (676)
                      ..-...|+.++...+.++..|........+.+.+.+--.+|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            4456677888888888888888877777777778888888888888888888888877766666554 778888888888


Q ss_pred             cCCCCCHHHHHHHHH
Q 005808          613 GIDPSNIECLYLRAS  627 (676)
Q Consensus       613 ~~~p~~~~~~~~la~  627 (676)
                      +.+|+++..|...-.
T Consensus       168 R~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFR  182 (568)
T ss_pred             hcCCCChHHHHHHHH
Confidence            888888777654433

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=1.7  Score=42.17  Aligned_cols=266  Identities=14%  Similarity=0.079  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCc--
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAIQ---SNPSA--  448 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~--  448 (676)
                      .+..+.......++++++.++..++..  .|.+        ......+|..+...|+..+-.........   .-+..  
T Consensus         7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka   86 (411)
T KOG1463|consen    7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA   86 (411)
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence            366677777788889999999998874  2222        34567889999999988776555544322   21111  


Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC--C
Q 005808          449 GEAWKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----DK--E  515 (676)
Q Consensus       449 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~--~  515 (676)
                      ......+.... ..-+..+.-+.++..+++......      ..-..+..+|...++|.+|+......++.    +.  .
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l  166 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL  166 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            11111122211 122334455555555554432221      13345778889999999999887766543    21  1


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CcH
Q 005808          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFS  585 (676)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~  585 (676)
                      -.+++..-..+|....+..+|...+..+-...     |..  ...-..-|.++....+|..|..+|-++++-..   ++.
T Consensus       167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v  246 (411)
T KOG1463|consen  167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV  246 (411)
T ss_pred             eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence            23455666778888888888888877665432     211  22233445666667889999999988886432   222


Q ss_pred             HH-----HHHHHHHHHHcCCHHH--HHHHHHHhhcCCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCC
Q 005808          586 KA-----YHLRGLLLHGLGQHKK--AIKDLSSGLGIDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       586 ~~-----~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .+     |..+..+.  .+..++  ++-.-+.+++....+.++....+.++.  .+.+|+.|+..|+.-+..+|-
T Consensus       247 ~A~~sLKYMlLcKIM--ln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  247 KALTSLKYMLLCKIM--LNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHHHHHHHHHHHHHH--hcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            32     23333333  444444  444445566766667888888888875  456888999988888877664

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.96  E-value=0.12  Score=41.27  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808          387 RGIAQVNEGKYASAISIFDQILKEDPMYPE---ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (676)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  463 (676)
                      +|..++..|++-+|+++.+..+...+++..   .+...|.++..+            +......+....+.+|       
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl~-------   62 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLLG-------   62 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHHH-------
Confidence            467788899999999999999988777653   334444444332            2222222222222232       


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005808          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (676)
                          +++.|.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus        63 ----sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   63 ----SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ----hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence                556777777777777777777777666666677777777776654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.94  E-value=0.15  Score=44.05  Aligned_cols=78  Identities=21%  Similarity=0.053  Sum_probs=39.1

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (676)
                      +..+-...++.+++...+...--+.|..+..-..-|.+++..|++.+|+..++.+....|..+.+.-.++.|+...|+
T Consensus        16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            333344444555555555544445555555555555555555555555555555544444444444455555544444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.87  E-value=2.3  Score=42.85  Aligned_cols=275  Identities=12%  Similarity=0.105  Sum_probs=173.3

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (676)
                      .+..-++.+|.+.-.|+.+...+-.+|.+++-.+.+++...-.|--+.+|.....--....++......|.+++...-+ 
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-  108 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-  108 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence            4555678899999999999999999999999999999999888888888776666566667888888888888865332 


Q ss_pred             HHHHHHHHHHHHHcC-----C----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALG-----E----SVEAIQDLSKALEFEPNSADILHERGIVNFK---------FKDFNAAVEDLSACV  510 (676)
Q Consensus       449 ~~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al  510 (676)
                      .+.|...-..-.+.+     +    .-+|.+..-...-..|.....|...+..+..         +.+.+.-...|.+++
T Consensus       109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral  188 (660)
T COG5107         109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL  188 (660)
T ss_pred             HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence            444443322222222     1    2233333333334567777777777665432         334555667777877


Q ss_pred             HhCCCCHH-HHHHHHHHHH-------------HcccHHHHHHHHHHHHhc-------CcccHH-----------HHHHHH
Q 005808          511 KLDKENKS-AYTYLGLALS-------------SIGEYKKAEEAHLKAIQL-------DRNFLE-----------AWGHLT  558 (676)
Q Consensus       511 ~~~~~~~~-~~~~la~~~~-------------~~g~~~~A~~~~~~al~~-------~p~~~~-----------~~~~la  558 (676)
                      ..--++.+ .|...-..-.             ..--|..|...+++...+       +|-+..           -|.+..
T Consensus       189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwI  268 (660)
T COG5107         189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWI  268 (660)
T ss_pred             cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHh
Confidence            65433322 2221111111             112255666666665443       222211           122222


Q ss_pred             HHHHH-----cCC-HH-HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005808          559 QFYQD-----LAN-SE-KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (676)
Q Consensus       559 ~~~~~-----~~~-~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (676)
                      ..-..     .|+ .. .---.+++++..-+-.+.+|+.....+...++-+.|+....+++...|.   ....++.+|..
T Consensus       269 kwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel  345 (660)
T COG5107         269 KWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYEL  345 (660)
T ss_pred             hHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhh
Confidence            22111     111 12 2223466777777778899999999999999999999999999888776   66778888877


Q ss_pred             hccHHHHHHHHHHHHh
Q 005808          632 IGEYREAIKDYDAALD  647 (676)
Q Consensus       632 ~g~~~~A~~~~~~al~  647 (676)
                      .++-+....+|+++.+
T Consensus       346 ~nd~e~v~~~fdk~~q  361 (660)
T COG5107         346 VNDEEAVYGCFDKCTQ  361 (660)
T ss_pred             cccHHHHhhhHHHHHH
Confidence            7777776676766654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.84  E-value=0.44  Score=44.35  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=35.4

Q ss_pred             ccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          429 RELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALE  477 (676)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (676)
                      ...++|+..|++++++.+...    .++..+..+++.++++++-+..|.+.+.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            367788888888888776543    3555667777788888888887777664

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.82  E-value=1.1  Score=38.90  Aligned_cols=123  Identities=17%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHH
Q 005808          388 GIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAA  461 (676)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~  461 (676)
                      +..+...+..++|+..|..+-+..-..  ..+....|.+....|+...|+..|..+-...|-.    ..+...-+.++..
T Consensus        65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence            334444455555555555444332211  2233444555555555555555555443322211    1122333344444


Q ss_pred             cCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808          462 LGESVEAIQDLSKAL-EFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (676)
Q Consensus       462 ~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (676)
                      .|.|+.-....+..- ..+|-...+.-.+|..-++.|++..|.+.|....
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            444444433333221 1122223334444444444555555555444443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.72  E-value=0.12  Score=47.89  Aligned_cols=101  Identities=20%  Similarity=0.241  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHhc----C-c--CcHHHHHHHHHHHHHcCCHHH-------HHHHHHHhhcCC--C----CCHHHHHH
Q 005808          565 ANSEKALECLQQVLYI----D-K--RFSKAYHLRGLLLHGLGQHKK-------AIKDLSSGLGID--P----SNIECLYL  624 (676)
Q Consensus       565 ~~~~~A~~~~~~al~~----~-~--~~~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~--p----~~~~~~~~  624 (676)
                      ..+++|++.|.-++-.    . +  .-+..+..+|++|...|+.+.       |+..|.+++...  |    +...+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            3455566655555421    1 1  124567777888888887544       455555555432  2    12467888


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHH
Q 005808          625 RASCYHAIGEYREAIKDYDAALDLELDSM-EKFVLQCLAFYQ  665 (676)
Q Consensus       625 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~  665 (676)
                      +|.+..+.|++++|.++|.+++.....+. .....++.-.++
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999998654443 345555555443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.70  E-value=0.041  Score=51.84  Aligned_cols=112  Identities=13%  Similarity=0.021  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--
Q 005808          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--  631 (676)
Q Consensus       554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--  631 (676)
                      ....+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++..--  
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~  198 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVS  198 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHH
Confidence            344444556688888888888888888888888888888888888888888888888888888888888877664321  


Q ss_pred             --hccHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHH
Q 005808          632 --IGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQ  665 (676)
Q Consensus       632 --~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~  665 (676)
                        -.++-..+......+.--+ .|.......-..||.
T Consensus       199 ~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~  235 (472)
T KOG3824|consen  199 AIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL  235 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence              2223333444443333333 333333444445554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.60  E-value=2  Score=45.62  Aligned_cols=137  Identities=15%  Similarity=0.086  Sum_probs=75.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcC
Q 005808          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRGQARAALG  463 (676)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g  463 (676)
                      .+|.+-.--|+|++|.+.|-.+-..+        .....+...|+|-.....++..-.-..  .-..++..+|..+..+.
T Consensus       739 q~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~  810 (1189)
T KOG2041|consen  739 QRAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMM  810 (1189)
T ss_pred             HhHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            34444445578888888776542221        112334555666655555443211111  11457777888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005808          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (676)
                      .|++|.++|.+.-..        -.+..+++....|++-..+.    ..-|++...+-.+|..+...|.-++|.+.+-+
T Consensus       811 ~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  811 EWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            888888877654221        23445555555555433322    23456666666667766666766666665543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.59  E-value=0.18  Score=40.32  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=50.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 005808          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSA---YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (676)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  566 (676)
                      +.-++..|++-+|+++.+..+...+++...   +...|.++..+.            ......+....+.+         
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl---------   61 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL---------   61 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH---------
Confidence            445566677777777777766666555432   233333333221            11111111111111         


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                        .+++++.++..+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus        62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence              2445555555555555555555555555555555666555555543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.55  E-value=1.5  Score=38.24  Aligned_cols=136  Identities=8%  Similarity=-0.005  Sum_probs=81.0

Q ss_pred             HHcccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--c--HHHHHHHHHHHHHcCCH
Q 005808          528 SSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--F--SKAYHLRGLLLHGLGQH  601 (676)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~--~~~~~~la~~~~~~g~~  601 (676)
                      ...+..++|+..|...-+..-..  .-+....+.+..+.|+...|+..|..+-...|.  -  ..+...-+.++...|-|
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            34556666776666655544332  334556667777777777777777776554331  1  12344456667777777


Q ss_pred             HHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          602 KKAIKDLSSGL-GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       602 ~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      +.-..-.+..- ..+|-...+...||..-++.|++.+|..+|.++.. +...+....+++.+.+
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            76655544432 22344446667777777788888888888877766 4444444444444443

>smart00028 TPR Tetratricopeptide repeats

Probab=95.45  E-value=0.026  Score=33.70  Aligned_cols=32  Identities=38%  Similarity=0.736  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .++..+|.++..+|++++|..+++++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35667777777777777777777777776664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.84  Score=47.58  Aligned_cols=129  Identities=15%  Similarity=0.073  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 005808          500 NAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ-  576 (676)
Q Consensus       500 ~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-  576 (676)
                      ..++..+...+..++.++..+..  +...+...+....+.-.+...+..+|.+..+..+++......|....+...+.. 
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~  127 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI  127 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33555555555566666655332  355555566666666677777777777777777777666666555555444444 


Q ss_pred             HHhcCcCcHHHHHHH------HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005808          577 VLYIDKRFSKAYHLR------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (676)
Q Consensus       577 al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (676)
                      +....|.+..+...+      +......|+..++...++++....|.++++...+...
T Consensus       128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            555666655544333      6666666677777777777777777665555544444

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.36  E-value=0.22  Score=38.78  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=38.6

Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhcc
Q 005808          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGE  634 (676)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  634 (676)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+...+-.++..+|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            445566666777777777777777777777777777777777766553  3444555555555554

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=1.4  Score=45.65  Aligned_cols=235  Identities=13%  Similarity=0.018  Sum_probs=136.2

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (676)
                      .+.......|..+-..+..+..+...|+.+.|+..+...++..-.  ..-.++.+|.++..+.+|..|-..+........
T Consensus       255 ~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd  334 (546)
T KOG3783|consen  255 ALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD  334 (546)
T ss_pred             HhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence            444555678888889999999999999988888888887761111  134567889999999999999999999888766


Q ss_pred             CcHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HhcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808          447 SAGEAWKRRG-QARAA--------LGESVEAIQDLSKA---LEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVK  511 (676)
Q Consensus       447 ~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~  511 (676)
                      ...-.|..++ -+++.        .|+-+.|..+++..   +...|.+..+   ....+.-+...+.             
T Consensus       335 WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------  401 (546)
T KOG3783|consen  335 WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------  401 (546)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------
Confidence            5544444444 33321        23444444333322   2222222111   1111111111110             


Q ss_pred             hCCCCHH--HHHHHHHHHHH--cccHHHHHHHHHHHH---hc-Cccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Q 005808          512 LDKENKS--AYTYLGLALSS--IGEYKKAEEAHLKAI---QL-DRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYID-  581 (676)
Q Consensus       512 ~~~~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  581 (676)
                      .++....  .++.++.++..  .....+.. -++..+   .. ++++ .-.+..+|.++..+|+...|..+|....+.. 
T Consensus       402 ~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~  480 (546)
T KOG3783|consen  402 LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKES  480 (546)
T ss_pred             ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            0111110  12222222211  11122222 111111   11 2222 3345678888999999999999888877431 


Q ss_pred             --c----CcHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCC
Q 005808          582 --K----RFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       582 --~----~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~  617 (676)
                        .    -.|.+++.+|.++...|. ..++..++.+|-....+
T Consensus       481 ~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  481 KRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             hhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence              1    236788999999999888 99999999998877644

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.31  E-value=0.42  Score=39.54  Aligned_cols=75  Identities=23%  Similarity=0.260  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHhhc-CCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLG-IDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       585 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      ....+++++++....   +..+.+..++..++ -.|.. -+..+.|+..+.+.|+|+.++++.+..++..|++..+.-..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            466778888887765   44567778888886 44432 36777888888888888888888888888888888765433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.28  E-value=0.22  Score=38.86  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=20.6

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (676)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (676)
                      .+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            34444445555555555555555555555555555555554444

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.27  E-value=0.087  Score=52.82  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=62.5

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  574 (676)
                      ..|+.-.|-+.+..++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-+.....|++++|....
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence            34555555555555555555555555555555555555555555544433332222333334444445555555555555


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (676)
                      .-.+...-.++++..--+.....+|-++++.-++++.+.++|.
T Consensus       381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            5554444444444444444445555555555555555555543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.24  E-value=0.33  Score=48.90  Aligned_cols=128  Identities=15%  Similarity=0.115  Sum_probs=105.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005808          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI  469 (676)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  469 (676)
                      .....|+.-.|-.-...++...|..|......+.+....|+|+.+...+..+-..-.....+...+.+....+|++++|.
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            34567899999998999999999999999999999999999999988887665554444555666777888899999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808          470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (676)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (676)
                      ....-++...-.++++....+......|-++++.-.+++.+.++|...
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            998888877777788777777777778889999999999999887643

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.15  E-value=6.6  Score=43.44  Aligned_cols=229  Identities=16%  Similarity=0.089  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-------c-------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 005808          418 LIGRGTARAFQRELEAAISDFTEAIQSNPS-------A-------------------GEAWKRRGQARAALGESVEAIQD  471 (676)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~-------------------~~~~~~la~~~~~~g~~~~A~~~  471 (676)
                      +..-|......+..++|.+++.++++.-.+       .                   ....+..+.+..-.+++..|...
T Consensus       304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~  383 (608)
T PF10345_consen  304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE  383 (608)
T ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            444455666667666777777777653111       0                   01344466777788999999888


Q ss_pred             HHHHHhcC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCCH---HHHHHHHHHHHHcc
Q 005808          472 LSKALEFE---PN------SADILHERGIVNFKFKDFNAAVEDLS--------ACVKLDKENK---SAYTYLGLALSSIG  531 (676)
Q Consensus       472 ~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~~~~~---~~~~~la~~~~~~g  531 (676)
                      +..+....   |.      .+..++..|..+...|+.+.|...|.        .+....+.+.   -+..++..++...+
T Consensus       384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~  463 (608)
T PF10345_consen  384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES  463 (608)
T ss_pred             HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence            88776542   22      36678888999999999999999998        3333333332   23344555555544


Q ss_pred             cHHH----HHHHHHHHHhcCcccH-----HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcC-c--C----cHHHHHHHHH
Q 005808          532 EYKK----AEEAHLKAIQLDRNFL-----EAWGHLTQFYQ--DLANSEKALECLQQVLYID-K--R----FSKAYHLRGL  593 (676)
Q Consensus       532 ~~~~----A~~~~~~al~~~p~~~-----~~~~~la~~~~--~~~~~~~A~~~~~~al~~~-~--~----~~~~~~~la~  593 (676)
                      .-..    +...+...-....+.+     .++..+..++.  ..-...++...+..+++.. .  +    ..-++..++.
T Consensus       464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~  543 (608)
T PF10345_consen  464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH  543 (608)
T ss_pred             ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            4332    3333333222111111     11222211121  1222346666666666544 1  1    1234556666


Q ss_pred             HHHHcCCHHHHHHHHHHhhcCCC---CCH-HHH-----HHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          594 LLHGLGQHKKAIKDLSSGLGIDP---SNI-ECL-----YLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p---~~~-~~~-----~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      .++ .|+..+.......+.....   +.. ..|     -.+...+...|+.++|.....+.-.
T Consensus       544 ~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  544 RLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            666 7888877766666654432   222 333     2455667888999999888776644

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.03  E-value=3.2  Score=39.22  Aligned_cols=265  Identities=13%  Similarity=0.074  Sum_probs=155.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcccHHHHHHHHHH---HHHhC--CCcHHH
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE---AIQSN--PSAGEA  451 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~--~~~~~~  451 (676)
                      +.+|......+++++|+..|.+++...-.        ...+...++.+|...|++..-.+....   +....  |....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            67788888999999999999999876221        245678899999999987654333322   22221  111111


Q ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHH
Q 005808          452 WKRRGQA-RAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKS  518 (676)
Q Consensus       452 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~  518 (676)
                      ...+..- -.....++.-+..+...++......      ..-..+..++++.|+|.+|+......+..      .+.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            1111111 1122345555566555554432221      22345677889999999999887766542      233345


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc-----CcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CcHHH-
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA-  587 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~-  587 (676)
                      ++..-..+|....+..++...+..+-..     .|...  ..-..-|.......+|..|..+|-++++-..   .+..+ 
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc  246 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC  246 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence            6667778888888888777777665443     23222  2223345566677889999999988886533   22333 


Q ss_pred             ----HHHHHHHHHHcCCHHHHHHHH--HHhhc-CCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCC
Q 005808          588 ----YHLRGLLLHGLGQHKKAIKDL--SSGLG-IDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       588 ----~~~la~~~~~~g~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~  651 (676)
                          |..+..+...  ..++-...+  ...++ .+....++....+.++.  .+.+|..|+..|..-+..+|-
T Consensus       247 ~sLkYmlLSkIMlN--~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~  317 (421)
T COG5159         247 VSLKYMLLSKIMLN--RREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF  317 (421)
T ss_pred             HHHHHHHHHHHHHh--hHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence                2333333333  233322222  22333 23344566666666663  456788888888877766553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.98  E-value=5.1  Score=41.22  Aligned_cols=101  Identities=6%  Similarity=-0.097  Sum_probs=76.6

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005808          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (676)
Q Consensus       548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (676)
                      |+....-..+-..+.+.|-+.+|...|.+.....|-....+..+..+-..  .-+..-+..+|+.++.....+++.|...
T Consensus       457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y  536 (568)
T KOG2396|consen  457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY  536 (568)
T ss_pred             CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence            34444445556677788889999999999988888766666555443322  1236778889999998888889999988


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhh
Q 005808          626 ASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       626 a~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      -..-..+|..+.+-..|.+|++.
T Consensus       537 ~~~e~~~g~~en~~~~~~ra~kt  559 (568)
T KOG2396|consen  537 MKEELPLGRPENCGQIYWRAMKT  559 (568)
T ss_pred             HHhhccCCCcccccHHHHHHHHh
Confidence            88888999999999999998874

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.94  E-value=0.41  Score=40.57  Aligned_cols=84  Identities=12%  Similarity=-0.008  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      ..+..........++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+..++......+..+...-.++.|+..
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34455555556677888888888777777888888888888888888888888888888777776767666677777776


Q ss_pred             cCCH
Q 005808          462 LGES  465 (676)
Q Consensus       462 ~g~~  465 (676)
                      +|+.
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            6654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.66  E-value=0.49  Score=40.10  Aligned_cols=71  Identities=17%  Similarity=0.006  Sum_probs=35.5

Q ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q 005808          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (676)
Q Consensus       530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (676)
                      .++.+++...+...--+.|+.+.....-|.+++..|++.+|+..++...+..+..+...-.++.|+..+|+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            44455555555444444555555555555555555555555555555544444444444444444444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.62  E-value=9  Score=42.35  Aligned_cols=262  Identities=11%  Similarity=-0.012  Sum_probs=130.1

Q ss_pred             HHhhccCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808          371 TRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (676)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (676)
                      .......|..+..-.......   ...+++..-+..+    ...|.+....+..+......|+.++|.....++......
T Consensus        86 ~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~  161 (644)
T PRK11619         86 TNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS  161 (644)
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Confidence            334444454444433333322   2345555555422    234677777777777888888877777766666544332


Q ss_pred             cHHHHHH------------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 005808          448 AGEAWKR------------------RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF-KFKDFNAAVEDLSA  508 (676)
Q Consensus       448 ~~~~~~~------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~  508 (676)
                      .+.....                  .....+..|+...|......+    +.....   ++.... -..+...+...+..
T Consensus       162 ~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~p~~~~~~~~~  234 (644)
T PRK11619        162 LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQNDPNTVETFART  234 (644)
T ss_pred             CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHCHHHHHHHhhc
Confidence            2222222                  223333344444443333222    111110   111111 01112222111111


Q ss_pred             HHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          509 CVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       509 al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                         ..|.. ......++.......+.+.|...+.+......-+    ..++..+|.-....+..++|..++..+..... 
T Consensus       235 ---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-  310 (644)
T PRK11619        235 ---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-  310 (644)
T ss_pred             ---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-
Confidence               11111 1122233333445566677777777654333221    22334444444433336677777776543322 


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      +.........+....++++.+...+...-....+.....+.+|+++...|+.++|..+|+++..
T Consensus       311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            2333444444555788888777777775443445567888888888888888888888888744

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.54  E-value=0.061  Score=48.64  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       561 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (676)
                      ....++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3445556666666666666666666666666666666666666666666666666554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.49  E-value=9.4  Score=43.78  Aligned_cols=100  Identities=22%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---cHHHHHHHHHHHHHhCCCcHHHHH
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      .+....+++..+.|+.|+..|+++-...|.-   -++.+..|.....+    |   .+++|+..|++.- -.|..+--|.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  556 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYL  556 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHH
Confidence            3444567788899999999999999988865   46777788776653    2   4677777777643 3566677788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEPNSAD  484 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  484 (676)
                      ..|.+|..+|++++-++++.-+++..|..|.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            8999999999999999999999999988765

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=2.1  Score=44.86  Aligned_cols=127  Identities=20%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 005808          400 AISIFDQILKEDPMYPEALIG--RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK-AL  476 (676)
Q Consensus       400 A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al  476 (676)
                      ++..+...+..+|.++..+..  +...+...+....+.-.+...+..+|.+..+..+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444455445556666555332  355555566666666667777777777777777777766666655555544444 56


Q ss_pred             hcCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          477 EFEPNSADILHER------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       477 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      ...|.+......+      +......|+..++...+.++....|.++.+...+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            6666665544433      6666666666777777777777777665554444443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.39  E-value=18  Score=44.85  Aligned_cols=62  Identities=18%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  478 (676)
                      .+.|...|++....|+++.|..++-.|.+..  -+.+....|..+...|+...|+..+++.+..
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            5566666666666666666666666655543  3455666666666666666666666666643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.31  E-value=2.3  Score=34.37  Aligned_cols=92  Identities=21%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hC
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------SN  445 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~  445 (676)
                      +..|...+..|-|++|...++++.+....            +.-++..++..+..+|+|++++...++++.       ++
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            44566667788999999999988875322            134566777788888888877766665553       33


Q ss_pred             CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          446 PSAGE----AWKRRGQARAALGESVEAIQDLSKAL  476 (676)
Q Consensus       446 ~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al  476 (676)
                      .+...    +.+..+..+..+|+.++|+..|+.+-
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            33322    23344555555666666666665544

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.03  E-value=0.19  Score=51.15  Aligned_cols=103  Identities=21%  Similarity=0.132  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      ++.....|.-.+..+....|+..|.+++...|.....+...+.++++.   |+.-.|+.....++.++|....+++.++.
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            444555566666677888999999999999999999998888888765   56677888899999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005808          458 ARAALGESVEAIQDLSKALEFEPNSA  483 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~  483 (676)
                      ++..++++.+|+.....+....|.+.
T Consensus       454 aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  454 ALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            99999999999999988888888553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.90  E-value=1  Score=40.42  Aligned_cols=97  Identities=11%  Similarity=-0.072  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHH----H
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS--AGE----A  451 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~----~  451 (676)
                      -..+..+|..|...|+++.|++.|.++.+.....   .+.++.+..+....+++.....++.++-.....  +..    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3466778888888888888888888876643322   456667777777778888777777776554222  211    2


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          452 WKRRGQARAALGESVEAIQDLSKALE  477 (676)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~  477 (676)
                      ...-|..++..++|..|...|-.+..
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCc
Confidence            22344555556666666666655443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.75  E-value=1.3  Score=36.85  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=59.8

Q ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 005808          378 SISVDFRLSRGIAQVNEG---KYASAISIFDQILK-EDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      ..+.+..+.+|+++....   +..+.+.+++.+++ ..|.. -+..++++..+++.++|+.++.+++..++..|++..+.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            455777888888887765   45677888888886 44443 56778889999999999999999999999988887765


Q ss_pred             HHH
Q 005808          453 KRR  455 (676)
Q Consensus       453 ~~l  455 (676)
                      ...
T Consensus       109 ~Lk  111 (149)
T KOG3364|consen  109 ELK  111 (149)
T ss_pred             HHH
Confidence            443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.66  E-value=5.3  Score=41.79  Aligned_cols=159  Identities=14%  Similarity=0.037  Sum_probs=90.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808          388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (676)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  466 (676)
                      =......|+++++....... +.-|.- ..-...++..+...|..+.|+...        .+++..+.+   ..+.|+.+
T Consensus       268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~  335 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLD  335 (443)
T ss_dssp             HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HH
T ss_pred             HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHH
Confidence            34455688999988777522 222222 344566777777888887777653        334444444   46778888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 005808          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (676)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (676)
                      .|.+..+     ..+++..|..+|......|+++-|..+|.++-        -+..+..+|...|+.+.-.+....+...
T Consensus       336 ~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  336 IALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            8877653     23467788888988888898888888887742        2344566777777776555555554433


Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  576 (676)
                      ...     ...-.+++..|+.++.++.+.+
T Consensus       403 ~~~-----n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  403 GDI-----NIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             T-H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred             cCH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence            221     1222334446777777666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.60  E-value=1.9  Score=38.67  Aligned_cols=99  Identities=12%  Similarity=0.017  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCH----HH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNI----EC  621 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~  621 (676)
                      ..++..+|..|.+.|+.+.|++.|.++......   ..+.+..+..+....+++.....++.++-..-.  .+.    ..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            456778888888888888888888887765432   245677777888888888888888877765422  222    23


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          622 LYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      ...-|..+...++|..|...|-.+....
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            4455667778889999988887776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.56  E-value=7.1  Score=40.92  Aligned_cols=154  Identities=19%  Similarity=0.101  Sum_probs=86.2

Q ss_pred             ccHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q 005808          429 RELEAAISDFTEAIQS------------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF------------------  478 (676)
Q Consensus       429 g~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------  478 (676)
                      .-|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|..+.++++=.                  
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            4567777777766553            2444667777777777778877777777776521                  


Q ss_pred             ---CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcccHHHHHHHHHHHHh-----
Q 005808          479 ---EPNSAD---ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLAL-SSIGEYKKAEEAHLKAIQ-----  545 (676)
Q Consensus       479 ---~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~al~-----  545 (676)
                         .|.+-.   +++.....+.+.|-+..|.++++-.++++|. ++.+...+..+| .+..+|+--+..++..-.     
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence               111111   2233334455667777777777777777776 555444444433 344555555555554422     


Q ss_pred             cCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcC
Q 005808          546 LDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKR  583 (676)
Q Consensus       546 ~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~  583 (676)
                      ..|+. ..-..++..|.....   -..|...+.+|+...|.
T Consensus       412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            22332 122344555554444   45566667777766663

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.51  E-value=0.1  Score=49.40  Aligned_cols=77  Identities=8%  Similarity=0.034  Sum_probs=36.0

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHH-HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL-RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      .|+++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|++|..|.
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            34444444444444444444444444444555555544444443 223334444444555555555555444444443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.31  E-value=1  Score=47.28  Aligned_cols=97  Identities=16%  Similarity=0.045  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      ..+...|..+++..+|..+++.|...+...|.+      +.....++.||....+.+.|.+++++|-+.+|.++-....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456777888999999999999999999876655      45677889999999999999999999999999999888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Q 005808          456 GQARAALGESVEAIQDLSKALEF  478 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~  478 (676)
                      ..+....|..++|+.+.......
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            88889999999999988776544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.29  E-value=6.6  Score=41.62  Aligned_cols=213  Identities=13%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-----
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKE--------------DPMYPEALIGRGTARAFQRELEAAISDFTEAI-----  442 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----  442 (676)
                      .-|-.+|...+..=+++-|.+.|.++-..              ....| --..+|.++...|++.+|...|.+.=     
T Consensus       586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~enRA  664 (1081)
T KOG1538|consen  586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHENRA  664 (1081)
T ss_pred             chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchhhH
Confidence            34566677777777778887777765321              01111 12344555556666666666665421     


Q ss_pred             -HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH----------HH
Q 005808          443 -QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLS----------AC  509 (676)
Q Consensus       443 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~----------~a  509 (676)
                       +...+  --.+.++.-++..|..++-..+.++-.+.  +-+.|   ...+.++...|+.++|+...-          -+
T Consensus       665 lEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~  739 (1081)
T KOG1538|consen  665 LEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIA  739 (1081)
T ss_pred             HHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence             11100  01122233333333333333333222111  11111   123455555666665554321          11


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHH
Q 005808          510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (676)
Q Consensus       510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  589 (676)
                      -+++....+.+...+..+.....+.-|-++|.+.-.        ...+..++...+++++|....++.-+.-   +.+++
T Consensus       740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~  808 (1081)
T KOG1538|consen  740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYM  808 (1081)
T ss_pred             hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccc
Confidence            112222223333333333344444444444433211        1223344455566666655544432222   34555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHh
Q 005808          590 LRGLLLHGLGQHKKAIKDLSSG  611 (676)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~a  611 (676)
                      -.|..+....++++|.+.|.+|
T Consensus       809 pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  809 PYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hHHHHhhhhhhHHHHHHHHHHh
Confidence            6666666666666666655554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.21  E-value=1.1  Score=51.46  Aligned_cols=163  Identities=21%  Similarity=0.252  Sum_probs=124.7

Q ss_pred             HHHHHHHHHhcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cccc
Q 005808          486 LHERGIVNFKFKDFNAAVE------DLSA-CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNF  550 (676)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~------~~~~-al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~  550 (676)
                      ....|......|.+.+|.+      .+.. .-.+.|.....+..++.++...|++++|+..-.++.-.        .|+.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            4456666777788887777      4442 22346777889999999999999999999988776543        3555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-----C
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-----S  617 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~  617 (676)
                      ...+.+++...+..++...|...+.++...        .|.-.....+++.++...++++.|+.+.+.|++...     .
T Consensus      1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred             HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence            778888998889999999999998888753        455556678888899999999999999999987532     1


Q ss_pred             ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          618 ---NIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       618 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                         ....+..+++.+..++++..|....+....+
T Consensus      1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence               2456777888888888888887777666543

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.19  E-value=0.69  Score=45.87  Aligned_cols=125  Identities=16%  Similarity=0.119  Sum_probs=85.8

Q ss_pred             hhhhhhhhhhhhhhhhhhcccchh-hhhhhhhHHHH--H---HHHHHHH-hcCCHHHHHHHHHHHHcccCChhH----HH
Q 005808            5 KLLDSRYRLNKTHKTICEIDELVR-VDSVMASAITA--R---IELAKLC-SLRNWSKAIRILDSLLAQSYEIQD----IC   73 (676)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~---~~~~~~~-~~~~y~~Ai~~y~~ai~~~~~~~~----~~   73 (676)
                      ..+|.++.-+..-+-...+..|.. ..+--.+-++|  |   ..++.+| ..|+.+.|+.+|.++-.-+.+..-    +.
T Consensus       112 ~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~l  191 (466)
T KOG0686|consen  112 YLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCL  191 (466)
T ss_pred             cccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHH
Confidence            445666655555544444444433 12222333444  4   3445666 499999999999997776622222    56


Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHhC-------C-CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808           74 NRAFCYSQLELHKHVIRDCDKALQLD-------P-TLLQAYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus        74 ~ra~~~~~~g~~~~A~~~~~~al~~~-------p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                      |.-.+-..+|+|.+....-.+|.+--       + -.++..+..|.+.+.+++|..|.+.|-.+
T Consensus       192 n~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  192 NLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77778888999999999999988751       1 13458889999999999999999999777

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.14  E-value=0.52  Score=37.21  Aligned_cols=58  Identities=12%  Similarity=0.128  Sum_probs=35.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccc-----CC-----hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 005808           43 LAKLCSLRNWSKAIRILDSLLAQS-----YE-----IQDICNRAFCYSQLELHKHVIRDCDKALQLDP  100 (676)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai~~~-----~~-----~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p  100 (676)
                      .......|||..|++.+.+.....     +.     .....++|..+...|++++|+..+++|+.+-.
T Consensus         5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345677888888877766665433     11     11135666666667777777777777666543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.09  E-value=4.9  Score=42.50  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=56.3

Q ss_pred             HHHHHHcCCHHHHHHHHH----------HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005808          456 GQARAALGESVEAIQDLS----------KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~----------~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  525 (676)
                      +..+...|+.++|+...-          -+-+++....+.+...+..+.....+.-|.+.|.+.-.        ...+..
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq  781 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ  781 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence            455556666666655321          11122222333444444444455555555555544311        112344


Q ss_pred             HHHHcccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          526 ALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQV  577 (676)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (676)
                      .+...++|.+|....++    .|+. +.+++..|..+....++++|.+.|.++
T Consensus       782 lHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  782 LHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             heeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            55666777777665544    2332 445666677777777777776655544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.99  E-value=1.1  Score=51.48  Aligned_cols=166  Identities=14%  Similarity=0.185  Sum_probs=115.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------
Q 005808          380 SVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------  444 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------  444 (676)
                      .....+..|......|.+.+|.+      .+.... ...|.....+..++.++...|++++|+..-.++.-+        
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence            34556677777778888887777      554332 356777889999999999999999999888776533        


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 005808          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-  515 (676)
Q Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-  515 (676)
                      .|+....+..++...+..++...|+..+.++...        .|.-.....+++.++...++++.|+.+.+.+...+.. 
T Consensus      1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred             CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence            2344567777888888888888888888777654        3444445667777777788888888888888775321 


Q ss_pred             -------CHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808          516 -------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (676)
Q Consensus       516 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (676)
                             ....+..++..+...+++..|....+....
T Consensus      1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence                   233455566666666666666655555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.84  E-value=7.8  Score=40.55  Aligned_cols=27  Identities=26%  Similarity=0.299  Sum_probs=13.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSK  474 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (676)
                      +...|..+|...+..|+++-|..+|.+
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            344555555555555555555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.57  E-value=14  Score=38.16  Aligned_cols=179  Identities=14%  Similarity=-0.007  Sum_probs=85.7

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Q 005808          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (676)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  548 (676)
                      ...+.+++... .+..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++-+.+..+|.+++...-
T Consensus        86 eh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI  162 (711)
T COG1747          86 EHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI  162 (711)
T ss_pred             HHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence            33444444433 2444555566666555 33445555555555555555555555555544 555556666665554321


Q ss_pred             c------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808          549 N------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (676)
Q Consensus       549 ~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (676)
                      .      -.++|..+-..  --.+.+.-.....+.-.... .... ++..+-.-|....++.+|+..+...++.+..+..
T Consensus       163 ~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~  240 (711)
T COG1747         163 PRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW  240 (711)
T ss_pred             chhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence            1      11222222111  01222222222222221111 1111 1222223344566777777777777777666666


Q ss_pred             HHHHHHHHHHH--------------------hccHHHHHHHHHHHHhhCCCc
Q 005808          621 CLYLRASCYHA--------------------IGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       621 ~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~~  652 (676)
                      +...+..-+..                    -.++-+++..|++.+..+..+
T Consensus       241 ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         241 ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence            65555554443                    345667777777776665544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.41  E-value=2.8  Score=41.92  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                      --.+..||+++++.+.|+....+.+.++|.....++..|.++..+.+|.+|.+.+--+
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777777777777777777777777777777777776655444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.36  E-value=1.5  Score=42.16  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (676)
Q Consensus        72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  130 (676)
                      +..++..+...|+++.++...++.++.+|-+-.+|.++-.+|...|+...|+..|++.-
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            56788889999999999999999999999999999999999999999999999999984

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.36  E-value=0.28  Score=31.52  Aligned_cols=29  Identities=38%  Similarity=0.363  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 005808          105 AYILKGCAFSALGRKEEALSVWEKGYEHA  133 (676)
Q Consensus       105 a~~~~g~~~~~l~~~~~A~~~~~~al~~~  133 (676)
                      ++..+|.+|..+|++++|+..+++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            44555666666666666666666665544

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.36  E-value=10  Score=39.88  Aligned_cols=154  Identities=16%  Similarity=0.042  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C------------
Q 005808          463 GESVEAIQDLSKALEF------------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----D------------  513 (676)
Q Consensus       463 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~------------  513 (676)
                      ..|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|.....+++=.     .            
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            4467777777766544            3444566777777777777777777777766521     1            


Q ss_pred             ----CCCHH---HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhc----
Q 005808          514 ----KENKS---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFY-QDLANSEKALECLQQVLYI----  580 (676)
Q Consensus       514 ----~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~----  580 (676)
                          |.+-.   +++..-..+.+.|-+..|.++++-.+.++|. +|.+...+..+| .+..+|.=-++.++..-..    
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence                11111   1122223334455566666666666666655 454444444443 2344444444444433211    


Q ss_pred             -CcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCC
Q 005808          581 -DKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       581 -~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  617 (676)
                       -|+ ...-..+|..|.....   -+.|...+.+|+...|.
T Consensus       412 ~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  412 QLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence             122 1122233444444333   34455555555555543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.35  E-value=0.29  Score=46.52  Aligned_cols=88  Identities=9%  Similarity=0.041  Sum_probs=73.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH-LTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                      .+.++....|+++..|...+......|.+.+--..|.++++.+|.+.+.|.. .+.-+...++.+.+...|.+++..+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3455555678888899888888888889999999999999999999998877 555667789999999999999999999


Q ss_pred             cHHHHHHHH
Q 005808          584 FSKAYHLRG  592 (676)
Q Consensus       584 ~~~~~~~la  592 (676)
                      +|..|...-
T Consensus       175 ~p~iw~eyf  183 (435)
T COG5191         175 SPRIWIEYF  183 (435)
T ss_pred             CchHHHHHH
Confidence            988887543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.31  E-value=0.32  Score=31.21  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 005808           70 QDICNRAFCYSQLELHKHVIRDCDKALQL   98 (676)
Q Consensus        70 ~~~~~ra~~~~~~g~~~~A~~~~~~al~~   98 (676)
                      ..+.++|.+|..+|++++|+..+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45789999999999999999999999863

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.17  E-value=1  Score=33.49  Aligned_cols=57  Identities=11%  Similarity=0.007  Sum_probs=43.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCChhH----HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 005808           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQ   97 (676)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~   97 (676)
                      .++-++|.+.+.++|+..+.++++..+++..    +..++.+|...|+|.+++...-.=++
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999988744433    34566688999999998886655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.06  E-value=9.8  Score=43.62  Aligned_cols=99  Identities=15%  Similarity=0.104  Sum_probs=77.1

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005808          421 RGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAAL----G---ESVEAIQDLSKALEFEPNSADILHERG  490 (676)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la  490 (676)
                      ...++.....|+.|+..|++.....|..   .++.++.|.....+    |   .+++|+..|++.- -.|.-|--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            3455667788999999999999998876   45777777776543    2   4677777777653 3455677788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005808          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (676)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  520 (676)
                      .+|...|++++-++++.-+++..|..+..-
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            999999999999999999999988887543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.05  E-value=2.4  Score=39.37  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      ..+.+.+|.+..+.|++++|..+|.+++....
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            45677788888888888888888888876543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.93  E-value=7.4  Score=39.13  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFK------------DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      ..++++.-.+.+..+|+...+|...-.++...-            -.++-+.+...+++.+|+.-.+|+....++.+.+.
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~  124 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH  124 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence            345666666677777766666554433332211            23333444555555555555555555555554332


Q ss_pred             --HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808          533 --YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (676)
Q Consensus       533 --~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (676)
                        +..=++..+++++.+|.+-.+|...=.+....    ....+=+++..+++..++.+..+|.....++.
T Consensus       125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence              34445555555555555544443332222211    11333444555555555555555555444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.63  E-value=0.4  Score=30.14  Aligned_cols=29  Identities=28%  Similarity=0.216  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808          104 QAYILKGCAFSALGRKEEALSVWEKGYEH  132 (676)
Q Consensus       104 ~a~~~~g~~~~~l~~~~~A~~~~~~al~~  132 (676)
                      +.|.++|.+-+..++|++|+..|+++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46788888888899999999888888544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.57  E-value=9.6  Score=38.17  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=73.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----c-ccHHHHHHH
Q 005808          493 NFKFKDFNAAVEDLSACVKLD-KE--------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----R-NFLEAWGHL  557 (676)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~-~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~l  557 (676)
                      ++...++.+|.++-...+... -.        ....|+.+..++...|+...-...+...+...     . ......+.+
T Consensus       136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L  215 (493)
T KOG2581|consen  136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL  215 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence            344577888887776655431 11        12456666777777777555555444443321     1 113344555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--Cc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808          558 TQFYQDLANSEKALECLQQVLYI--DK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       558 a~~~~~~~~~~~A~~~~~~al~~--~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (676)
                      -+.|...+.|+.|-....+..--  ..  ......+.+|.+..-+++|..|.+++-+|+...|.+
T Consensus       216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            66677777777777766665311  11  223455667777777777777777777777777764

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.55  E-value=6.7  Score=39.42  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc----HHHHH
Q 005808          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE----YREAI  639 (676)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~  639 (676)
                      -.++-+.+...+++.+|+...+|..+.+++.+.+  ++..=+..++++++.+|.+-.+|...=.+......    ..+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            3456667777888888888888888888888766  35777888888888888887777665555443322    46667


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          640 KDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       640 ~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      ++..+++.-++.|..+|.++.+.+-
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHH
Confidence            7888888888888888887776654

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.50  E-value=14  Score=35.66  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=12.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005808          482 SADILHERGIVNFKFKDFNAAVEDL  506 (676)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~  506 (676)
                      ++..+..+|..+++.|++.+|..++
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3455555555555555555554444

; PDB: 3LKU_E 2WPV_G.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.01  E-value=1.1  Score=35.26  Aligned_cols=59  Identities=15%  Similarity=0.062  Sum_probs=47.4

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 005808           76 AFCYSQLELHKHVIRDCDKALQLDPT---------LLQAYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (676)
Q Consensus        76 a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~  134 (676)
                      -.-.++.|+|.+|+..+.+.......         ...+.+.+|.++...|++++|+..++.|+.+..
T Consensus         5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            34567899999999888887755432         234788899999999999999999999976654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.82  E-value=0.54  Score=29.56  Aligned_cols=29  Identities=21%  Similarity=0.088  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 005808           71 DICNRAFCYSQLELHKHVIRDCDKALQLD   99 (676)
Q Consensus        71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~   99 (676)
                      .|..+|.+-+..++|++|+.||++||++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.34  E-value=0.45  Score=26.97  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=16.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          104 QAYILKGCAFSALGRKEEALSVWE  127 (676)
Q Consensus       104 ~a~~~~g~~~~~l~~~~~A~~~~~  127 (676)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356667777777777777776554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.93  E-value=2  Score=40.78  Aligned_cols=67  Identities=18%  Similarity=0.078  Sum_probs=42.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (676)
                      ++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            3444555566666666666666666666666666666666666666666666666666666665543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.53  E-value=4.5  Score=30.15  Aligned_cols=62  Identities=6%  Similarity=0.032  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcccHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAI  442 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al  442 (676)
                      +.-.+..|.-++...+.++|+..++++++..++.+.-+.   .+..++...|+|.+.+.+..+=+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777788888888888888888887777655444   44456677777777776654433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.33  E-value=1.3  Score=27.44  Aligned_cols=32  Identities=34%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHhccHHHHHHH--HHHHHhhCCC
Q 005808          620 ECLYLRASCYHAIGEYREAIKD--YDAALDLELD  651 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~  651 (676)
                      +.++.+|..+...|++++|+..  |.-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4566677777777777777777  3366665554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=89.22  E-value=40  Score=37.34  Aligned_cols=253  Identities=8%  Similarity=-0.026  Sum_probs=155.2

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcccHHHHHHHHHHHHHhC
Q 005808          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSN  445 (676)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~  445 (676)
                      .+......++.+...+..+-..+...|++++-...-.++.+..|..+..|.....-..   ..+.-.++...|++++. +
T Consensus       101 t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-d  179 (881)
T KOG0128|consen  101 TLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-D  179 (881)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-c
Confidence            3444456677777888888888889999988888878888888888888766554433   23566778888888875 3


Q ss_pred             CCcHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808          446 PSAGEAWKRRGQARAAL-------GESVEAIQDLSKALEFEPN-------SADILHERGIVNFKFKDFNAAVEDLSACVK  511 (676)
Q Consensus       446 ~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (676)
                      -++...|...+......       ++++.-...|.+++..-..       ....+...-..|...-..++-+.++...+.
T Consensus       180 y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~  259 (881)
T KOG0128|consen  180 YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK  259 (881)
T ss_pred             cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            34555666666555443       4566677777777754221       123444445555555555666677766665


Q ss_pred             hCCCCHHH----HHHHH--H-HHHHcccHHHHHHHHHHH-------HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          512 LDKENKSA----YTYLG--L-ALSSIGEYKKAEEAHLKA-------IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (676)
Q Consensus       512 ~~~~~~~~----~~~la--~-~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (676)
                      .. -+..+    |....  . ......+++.|..-+.+.       ++..|.....|..+.......|..-.-...++++
T Consensus       260 ~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~  338 (881)
T KOG0128|consen  260 QP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERA  338 (881)
T ss_pred             cc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            53 22221    11111  1 112234555555443333       3333444555666666777788888777888888


Q ss_pred             HhcCcCcHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          578 LYIDKRFSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       578 l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      ....+.+...|...+...- .++-.+.+...+-+++...|-....|-
T Consensus       339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~  385 (881)
T KOG0128|consen  339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWK  385 (881)
T ss_pred             HHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHH
Confidence            8777777777777765443 344555666677777776666444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.93  E-value=4.5  Score=36.57  Aligned_cols=71  Identities=21%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHhccHHHHH
Q 005808          568 EKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       568 ~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~  639 (676)
                      +.|...|-++-.... +++...+.+|..|. ..+.++|+..+-+++++.+.    +++++..|+.++.++|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            445555444432211 44566666666555 34566666666666665332    3566666777777777666653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.74  E-value=2.7  Score=39.88  Aligned_cols=71  Identities=23%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005808          555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (676)
Q Consensus       555 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (676)
                      .++=..+...++++.|..+.++.+..+|.++.-+...|.+|.+.|.+.-|+..++..+..-|+++.+-...
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            34445666777777777777777777777777777777777777777777777777777777766554433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.02  E-value=5.5  Score=33.10  Aligned_cols=102  Identities=14%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             hhhcccchhhhhhhhhHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcccCChhHHHHHHHHH-HHhhCHHHHHHHHHHH
Q 005808           20 ICEIDELVRVDSVMASAITARIELAKLC---SLRNWSKAIRILDSLLAQSYEIQDICNRAFCY-SQLELHKHVIRDCDKA   95 (676)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~-~~~g~~~~A~~~~~~a   95 (676)
                      ||+++|-..++-+--    --....+.|   ..|+..+-+.||-+.-.    ..-|..+|.-. ...|+-++=-+.++..
T Consensus        41 ICNiiDaa~C~yvv~----~LdsIGkiFDis~C~NlKrVi~C~~~~n~----~se~vD~ALd~lv~~~kkDqLdki~~~l  112 (161)
T PF09205_consen   41 ICNIIDAADCDYVVE----TLDSIGKIFDISKCGNLKRVIECYAKRNK----LSEYVDLALDILVKQGKKDQLDKIYNEL  112 (161)
T ss_dssp             HHHHHHH--HHHHHH----HHHHHGGGS-GGG-S-THHHHHHHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             eeecchhhchhHHHH----HHHHHhhhcCchhhcchHHHHHHHHHhcc----hHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            677766666543311    111223434   46888999999876322    22378888844 4455544444444444


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus        96 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                      ..-+..+++-++.+|.+|.++|+..+|-..+.+|
T Consensus       113 ~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A  146 (161)
T PF09205_consen  113 KKNEEINPEFLVKIANAYKKLGNTREANELLKEA  146 (161)
T ss_dssp             -----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            4445567889999999999999999999999998

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.37  E-value=29  Score=33.50  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q 005808          515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG--HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (676)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  592 (676)
                      .++..+..+|..+.+.|++.+|..+|-..     +++....  .+....               ..+-.|.....+...|
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~---------------~~~~~~~e~dlfi~Ra  147 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEW---------------STKGYPSEADLFIARA  147 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHH---------------HHHTSS--HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHH---------------HHhcCCcchhHHHHHH
Confidence            46788999999999999988888777432     1111111  111111               1123344445555544


Q ss_pred             HH-HHHcCCHHHHHHHHHHhhcC----CC-----------CCHHHHH-HHHHHHHHhcc---HHHHHHHHHHHHhhCCCc
Q 005808          593 LL-LHGLGQHKKAIKDLSSGLGI----DP-----------SNIECLY-LRASCYHAIGE---YREAIKDYDAALDLELDS  652 (676)
Q Consensus       593 ~~-~~~~g~~~~A~~~~~~al~~----~p-----------~~~~~~~-~la~~~~~~g~---~~~A~~~~~~al~~~p~~  652 (676)
                      .+ |...++...|...+....+.    +|           +.|...+ .+-..-.+.++   |..-.+.|+..++.+|.-
T Consensus       148 VL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~  227 (260)
T PF04190_consen  148 VLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSF  227 (260)
T ss_dssp             HHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHH
Confidence            43 66678888888766655543    22           2232111 11111122232   334444555556666777


Q ss_pred             HHHHHHHHHHHHHhh
Q 005808          653 MEKFVLQCLAFYQVL  667 (676)
Q Consensus       653 ~~~~~~~~~~~~~~~  667 (676)
                      ......++..||..-
T Consensus       228 ~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  228 KEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHCCCC
Confidence            777777888887643

; PDB: 3LKU_E 2WPV_G.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.34  E-value=0.73  Score=26.11  Aligned_cols=22  Identities=23%  Similarity=0.064  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHhccHHHHHHHH
Q 005808          621 CLYLRASCYHAIGEYREAIKDY  642 (676)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~  642 (676)
                      +.+.+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.27  E-value=41  Score=35.10  Aligned_cols=77  Identities=12%  Similarity=-0.028  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL  476 (676)
Q Consensus       397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  476 (676)
                      ++-...++.+++.... +-.+++.++.+|... ..+.-...+++.++.+-++...-..++..|.. ++...+..+|.+++
T Consensus        82 ~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~  158 (711)
T COG1747          82 NQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL  158 (711)
T ss_pred             HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence            3333344444444332 234445555555544 22333444444444444444444444444433 44445555555544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.96  E-value=2.6  Score=26.20  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH
Q 005808          383 FRLSRGIAQVNEGKYASAISI  403 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~  403 (676)
                      .++.+|..+..+|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344445555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.79  E-value=4  Score=39.30  Aligned_cols=63  Identities=21%  Similarity=0.160  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (676)
                      ..++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|+++-+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555555555555555555555555443

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=86.77  E-value=34  Score=33.66  Aligned_cols=247  Identities=13%  Similarity=0.003  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC--HHHHHHHHH-HHHHcccHHHHHHHHHHHHHhCCCcH-----
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE---DPMY--PEALIGRGT-ARAFQRELEAAISDFTEAIQSNPSAG-----  449 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~--~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~-----  449 (676)
                      -+..+.+|..+...|++.+-.......-..   -+..  +.....+-. +....+..+.-+..+..+++.....-     
T Consensus        48 E~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLR  127 (411)
T KOG1463|consen   48 EQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLR  127 (411)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHH
Confidence            346677888888888887766665554321   1111  111111111 11122334444555555554332221     


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCH
Q 005808          450 -EAWKRRGQARAALGESVEAIQDLSKALEF----E--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----KENK  517 (676)
Q Consensus       450 -~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~  517 (676)
                       ..-..+..+|...++|.+|+......+..    +  +.-.+++..-...|+...+..+|...+..+-...     |...
T Consensus       128 q~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPql  207 (411)
T KOG1463|consen  128 QSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQL  207 (411)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHH
Confidence             23345788999999999999988776643    2  2235567777888999999999988887765431     2211


Q ss_pred             H--HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cH---HHHHHHHHHHHHcCCHHHHHHHH--HHHHhcCcCcHHH
Q 005808          518 S--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---FL---EAWGHLTQFYQDLANSEKALECL--QQVLYIDKRFSKA  587 (676)
Q Consensus       518 ~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~---~~~~~la~~~~~~~~~~~A~~~~--~~al~~~~~~~~~  587 (676)
                      .  .-..=|..+....+|.-|..+|-++++-...   +.   ..+..+-.+-...+..++--..+  +.+++....+..+
T Consensus       208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A  287 (411)
T KOG1463|consen  208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA  287 (411)
T ss_pred             HHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence            1  1222356666678999999999999875321   12   33344444555667766654444  3455666667788


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808          588 YHLRGLLLHGL--GQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (676)
Q Consensus       588 ~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (676)
                      ....+.++.+.  .+|+.|+..|..-+..+|   -+..++..+|.
T Consensus       288 mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd  329 (411)
T KOG1463|consen  288 MKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYD  329 (411)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHH
Confidence            88888887663  578888888888776554   44555555553

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.58  E-value=33  Score=33.42  Aligned_cols=212  Identities=13%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (676)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (676)
                      ..-+.+-....+..+..+-++....+++++|....++..++.--  ..-..+|...++++++...    ..+...+....
T Consensus       185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh  258 (556)
T KOG3807|consen  185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQH  258 (556)
T ss_pred             ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhh
Confidence            33444555566666777777788888888888887777766432  2235567777777776432    22222222222


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHH
Q 005808          496 FKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKAL  571 (676)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~  571 (676)
                      .|...+|.      .+. ..+.  .+-..++.|..++|+..+|++.++...+..|-.  ..+.-++...+....-|.+..
T Consensus       259 ~~~~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq  331 (556)
T KOG3807|consen  259 QSPQHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ  331 (556)
T ss_pred             hccchhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33222221      111 1222  233457888888888888888888877766632  334455666666665555555


Q ss_pred             HHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          572 ECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       572 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      ..+-+.-++. |......+.-+.+        ++...-+   +..|+   .-...|..-..    ..|++...++++.+|
T Consensus       332 avLakYDdislPkSA~icYTaALL--------K~RAVa~---kFspd---~asrRGLS~AE----~~AvEAihRAvEFNP  393 (556)
T KOG3807|consen  332 AVLAKYDDISLPKSAAICYTAALL--------KTRAVSE---KFSPE---TASRRGLSTAE----INAVEAIHRAVEFNP  393 (556)
T ss_pred             HHHHhhccccCcchHHHHHHHHHH--------HHHHHHh---hcCch---hhhhccccHHH----HHHHHHHHHHhhcCC
Confidence            5444433221 2222222221111        1111111   11222   22222222222    247888889999999


Q ss_pred             CcHHHHHH
Q 005808          651 DSMEKFVL  658 (676)
Q Consensus       651 ~~~~~~~~  658 (676)
                      .-+...+.
T Consensus       394 HVPkYLLE  401 (556)
T KOG3807|consen  394 HVPKYLLE  401 (556)
T ss_pred             CCcHHHHH
Confidence            87765443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.34  E-value=34  Score=33.34  Aligned_cols=212  Identities=15%  Similarity=0.047  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      ..-+..-....+..+..+-++....+++++|..+.++..++.--.  .-..+|...++++++...    ..++.......
T Consensus       185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh  258 (556)
T KOG3807|consen  185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE----TIYRQSQQCQH  258 (556)
T ss_pred             ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH----HHHhhHHHHhh
Confidence            334445555667788888899999999999999999988876433  235678888888876432    22223333333


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHH
Q 005808          462 LGESVEAIQDLSKALEFEPNSA--DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~  537 (676)
                      .|...+|.      .+.+ .+.  ..-..++.+..++|+..+|++.++...+..|-..  .++-++...+....-|.+..
T Consensus       259 ~~~~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq  331 (556)
T KOG3807|consen  259 QSPQHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ  331 (556)
T ss_pred             hccchhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322221      1222 222  2445789999999999999999999888777322  33445555666655555544


Q ss_pred             HHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          538 EAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       538 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      ..+-+.-++. |......+.-+.+        ++...-+   +..   ++.-...|..-..    ..|++.+.++++.+|
T Consensus       332 avLakYDdislPkSA~icYTaALL--------K~RAVa~---kFs---pd~asrRGLS~AE----~~AvEAihRAvEFNP  393 (556)
T KOG3807|consen  332 AVLAKYDDISLPKSAAICYTAALL--------KTRAVSE---KFS---PETASRRGLSTAE----INAVEAIHRAVEFNP  393 (556)
T ss_pred             HHHHhhccccCcchHHHHHHHHHH--------HHHHHHh---hcC---chhhhhccccHHH----HHHHHHHHHHhhcCC
Confidence            4444332221 2222221111111        1111111   112   2233333322222    358888999999999


Q ss_pred             CCHHHHHH
Q 005808          617 SNIECLYL  624 (676)
Q Consensus       617 ~~~~~~~~  624 (676)
                      .-+..+..
T Consensus       394 HVPkYLLE  401 (556)
T KOG3807|consen  394 HVPKYLLE  401 (556)
T ss_pred             CCcHHHHH
Confidence            87655443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.25  E-value=2.5  Score=40.13  Aligned_cols=58  Identities=22%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus        72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                      +...+..|...|.+.+|+..++++++++|-+-.-+..+-.++..+|+--.|.+.|++-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3466678999999999999999999999999999999999999999999999999887

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.53  E-value=20  Score=36.81  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HH--HHHHHHHHHcccHHHHHHHHHHHHHh
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--AL--IGRGTARAFQRELEAAISDFTEAIQS  444 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~  444 (676)
                      ......+..++..++|..|..++..+...-|....  .+  ...|..++..-++.+|.+.++..+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            34567788899999999999999999886343333  23  33455567788999999999988765

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.27  E-value=14  Score=33.46  Aligned_cols=70  Identities=21%  Similarity=0.171  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHHH
Q 005808          500 NAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLANSEKA  570 (676)
Q Consensus       500 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A  570 (676)
                      +.|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+.    +++++..++.++..+|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            44555444432221 133555555555554 34556666666666655432    256666666666666666655

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.28  E-value=66  Score=35.83  Aligned_cols=243  Identities=15%  Similarity=0.030  Sum_probs=122.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005808          390 AQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA  468 (676)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  468 (676)
                      .+....-|.-|+.+.+.- ..+++. ...+...|.-++..|++++|...|-+.+..-... .+.    .-+.......+-
T Consensus       343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-~Vi----~kfLdaq~IknL  416 (933)
T KOG2114|consen  343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-EVI----KKFLDAQRIKNL  416 (933)
T ss_pred             HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-HHH----HHhcCHHHHHHH
Confidence            445556677777665542 222222 4556677888888888888888888876532111 110    011111222233


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcccHHHHHHHHHHHHh
Q 005808          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY---TYLGLALSSIGEYKKAEEAHLKAIQ  545 (676)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~  545 (676)
                      ..+++...+..-.+.+--..+-.+|.+.++.+.-.++.++    .+. ....   -..-.++.+.+-.++|.....+.-.
T Consensus       417 t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~  491 (933)
T KOG2114|consen  417 TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK  491 (933)
T ss_pred             HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence            3445555544444444455666778888777665444433    221 1110   1112233333444444433332211


Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-C-CCCHHH-
Q 005808          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-D-PSNIEC-  621 (676)
Q Consensus       546 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~-  621 (676)
                          +.   ..+-.++...++|++|+.++...   .|. -.......|..++.. .+++-...+-+.+.. . +..... 
T Consensus       492 ----he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~  560 (933)
T KOG2114|consen  492 ----HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSL  560 (933)
T ss_pred             ----CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchh
Confidence                11   12334556678888888887753   222 234455566666653 445555555444432 1 111110 


Q ss_pred             ---HHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          622 ---LYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       622 ---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                         ..-.-.+..-.+++..-..+++...+..|+.++
T Consensus       561 s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e  596 (933)
T KOG2114|consen  561 SNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE  596 (933)
T ss_pred             hcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence               011223344566777777777777777777665

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.25  E-value=44  Score=32.00  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----CCCCHHH--
Q 005808          555 GHLTQFYQDLANSEKALECLQQVLYI------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNIEC--  621 (676)
Q Consensus       555 ~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~--  621 (676)
                      ..++.++.+.|.|.+|+......+..      .+.-...+..-..+|....+..++...+..|-..     -|....+  
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l  208 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL  208 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence            45666777888888888776665432      2233455666677777777777777666655322     2322222  


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          622 LYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      -..-|.....-.+|..|..+|-++++-
T Consensus       209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         209 DLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             HHhccceeeccccchhHHHHHHHHHhc
Confidence            223355556667788888888777763

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.90  E-value=30  Score=38.30  Aligned_cols=191  Identities=14%  Similarity=0.025  Sum_probs=109.8

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005808          421 RGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF  499 (676)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  499 (676)
                      .-.++.+..-|+-|+...+.- ..+++. ..++...|..++..|++++|...|-+.+..-.. +.+    ..-+....+.
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~V----i~kfLdaq~I  413 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEV----IKKFLDAQRI  413 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHH----HHHhcCHHHH
Confidence            345566667778887765442 222222 456777899999999999999999998865321 111    1122344455


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKALECLQQV  577 (676)
Q Consensus       500 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~a  577 (676)
                      .+-..+++...+..-.+.+-...|-.+|.++++.++-.+..++    .+.-...  .-..-.++.+.+-.++|.-...+.
T Consensus       414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~  489 (933)
T KOG2114|consen  414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKF  489 (933)
T ss_pred             HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence            5556667777666656666666788899999998776555443    3311000  111122333344444554443332


Q ss_pred             HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHH
Q 005808          578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHA  631 (676)
Q Consensus       578 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~  631 (676)
                      -    .+.   ..+-.++...++|++|+.++...   .|+. .......|..+..
T Consensus       490 ~----~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~  534 (933)
T KOG2114|consen  490 K----KHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE  534 (933)
T ss_pred             c----cCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh
Confidence            1    122   22345667789999999998763   2322 2344445555544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.44  E-value=47  Score=31.79  Aligned_cols=26  Identities=8%  Similarity=-0.026  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILK  409 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~  409 (676)
                      -+...++++..|+..+|+.-++.-+.
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~   38 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHID   38 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            34455667777777777777766554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=82.06  E-value=61  Score=32.80  Aligned_cols=32  Identities=19%  Similarity=0.021  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                      ...+.+|.+..-+++|..|.+++-+++...|.
T Consensus       248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            33444555555555555555555555555543

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.05  E-value=2.5  Score=43.09  Aligned_cols=57  Identities=14%  Similarity=0.184  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808           73 CNRAFCYSQLELHKHVIRDCDKALQLD---------PTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (676)
Q Consensus        73 ~~ra~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  130 (676)
                      ..+...+.-+|+|..|++..+- |+++         +-++..+|..|-+|+.+++|.+|++.|..++
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555678889999999997654 4433         2356689999999999999999999999995

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=81.88  E-value=46  Score=31.90  Aligned_cols=99  Identities=9%  Similarity=0.030  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---EC  621 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  621 (676)
                      .+++.++|..|.+.++.+.+.+++.+.+...-      +-......+|.+|..+.-.++.++.....++...+..   ..
T Consensus       115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy  194 (412)
T COG5187         115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY  194 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence            44555555555555555555555555443221      1112233444444444444444444444444433211   12


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          622 LYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      -...|...+...+|.+|...+..++...
T Consensus       195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         195 KVYKGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            2233444445555555555555555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.12  E-value=7.2  Score=37.22  Aligned_cols=58  Identities=19%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                      +...+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.|.+.|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3445566666777777777777777777766677777777777777766666655544

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.12  E-value=23  Score=33.75  Aligned_cols=52  Identities=13%  Similarity=0.158  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcCcccHHHH
Q 005808          503 VEDLSACVKLDKENKSAYTYLGLALSSI--GEYKKAEEAHLKAIQLDRNFLEAW  554 (676)
Q Consensus       503 ~~~~~~al~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~  554 (676)
                      +.++..+++.+|.+-.+|...-.++...  .++..-+...++.++.++.+-..|
T Consensus        94 ld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W  147 (328)
T COG5536          94 LDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVW  147 (328)
T ss_pred             HHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccccee
Confidence            3444444444455444444444433332  334444444444444444444433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=80.73  E-value=6.3  Score=38.53  Aligned_cols=60  Identities=17%  Similarity=0.109  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005808           88 VIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE  147 (676)
Q Consensus        88 A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~  147 (676)
                      |+..|.+|+.+.|++..+|..+|.++...|+.=+|+=.|-+++.-...++.+...+..+-
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf   60 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF   60 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999866555566655554433

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=80.60  E-value=41  Score=29.89  Aligned_cols=186  Identities=15%  Similarity=0.108  Sum_probs=114.0

Q ss_pred             CCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHhCCCcHHH
Q 005808          378 SISVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARA-----FQRELEAAISDFTEAIQSNPSAGEA  451 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~  451 (676)
                      ...|+....+|..+-. +.+|++|..+|..--+.+. .+..-+.+|..++     ..++...|+..+..+-.  .+.+.+
T Consensus        31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a  107 (248)
T KOG4014|consen   31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA  107 (248)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence            3457777777776543 5789999998887655443 3555555555443     24578889999988765  566777


Q ss_pred             HHHHHHHHHHc-----C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          452 WKRRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       452 ~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                      -..+|.++..-     +  +..+|.+++.++-...  +..+.+.+...|+.-.  ++       +....|..... ...+
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~~~  175 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LDRA  175 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cchh
Confidence            77777776543     2  3778999999887665  5566666666665432  11       11112311100 0123


Q ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 005808          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYI  580 (676)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  580 (676)
                      ..+....+.+.|.++--++-++  +++.+-.++.+.|..    -.+-++|..+-.++.++
T Consensus       176 ~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  176 ELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             hhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            4444556778888877777665  345666666666653    23466677666666554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.35  E-value=40  Score=32.21  Aligned_cols=79  Identities=19%  Similarity=0.115  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhcc
Q 005808          567 SEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGE  634 (676)
Q Consensus       567 ~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~  634 (676)
                      ....++.+.+++....      -.......+|..|+..|++++|+.+|+.+.......      ..+...+..|+..+|+
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~  233 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD  233 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            3344555555554322      123456678899999999999999999886543321      3566778888888888


Q ss_pred             HHHHHHHHHHH
Q 005808          635 YREAIKDYDAA  645 (676)
Q Consensus       635 ~~~A~~~~~~a  645 (676)
                      .+..+.+.-+.
T Consensus       234 ~~~~l~~~leL  244 (247)
T PF11817_consen  234 VEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHH
Confidence            88777665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	676
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-13
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-08
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		3e-09
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-04
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-08
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		8e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		1e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		6e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		2e-04
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E     
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           ++LD  +  A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 570 ALECLQQVLYIDKR 583
           A+E  Q+ L +D R
Sbjct: 122 AIEYYQKALELDPR 135

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L +D 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           R ++A+              +AI+     L +DP + E  Y   + Y+  G+Y EAI+ Y
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 643 DAALDLE 649
             AL+L+
Sbjct: 127 QKALELD 133

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+  LG A    G+Y +A E + KA++LD N  EA
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           NSA+  +  G   +K  D++ A+E     ++LD  N  A+  LG A    G+Y +A E +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
            KA++LD N  EAW +L   Y    + ++A+E  Q+ L +D   ++A
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A+              +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
              L +DP+N E  Y   + Y+  G+Y EAI+ Y  AL+L+ ++ E
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAWK  G A    G+  +AI+   KALE +PN+A   +  G   +K  D+  A+E  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+   G A    G+Y+KA E + KA++LD N  +A
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
           N  EAW +L   Y    + +KA+E  Q+ L +D   + A+             +KAI+  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
              L +DP+N +  Y R + Y+  G+Y++AI+DY  AL+L+
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 75/151 (49%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           G  +  + + + AI  + + ++++P+  E   + G+    +G   +AI+ L K +  +  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA+  +  G  NF   +  AA++ L   + L+     AY  LGL   S+GE+ KA EA+ 
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           K I +   F+ A+  +   Y+     ++A++
Sbjct: 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 61/135 (45%)
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E  + Y  +G    + G++  A  A+ K ++ D N +E    L + Y D+     A+E L
Sbjct: 3   ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL 62
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           ++ + +D   ++AY             + AI  L   + ++    +  Y     Y ++GE
Sbjct: 63  KKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122
Query: 635 YREAIKDYDAALDLE 649
           + +AI+ Y+  + ++
Sbjct: 123 HDKAIEAYEKTISIK 137

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 100/254 (39%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q NP        
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G    ALG   EA     KA+E +PN A      G V     +   A+      V LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +    + A++  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           ++ + +   F  AY              +A    ++ L + P++ + L   A+     G 
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Query: 635 YREAIKDYDAALDL 648
             EA++ Y  AL++
Sbjct: 321 IEEAVRLYRKALEV 334

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE  PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++L   N  A+  LG A    G+Y +A E + KA++L  N  EA
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 31/282 (10%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447
           GK  +A+    ++++    +  A + RG     Q +L+ A  DF + ++SNPS       
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 448 ------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
                 + E  + R QA  A G  +   AI  L K LE     A++   R     K  + 
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193
Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++    + H  Q
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253
Query: 560 FYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK-------------- 603
             +     E A E ++   Y D   ++                 K+              
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313
Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           AI+  S  L ++P N+  L  RA  Y     Y EAI+DY+ A
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    ++++    +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 66  RATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 447 S-------------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGI 491
           S             + E  + R QA  A G  +   AI  L K LE     A++   R  
Sbjct: 126 SENEEKEAQSQLIKSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
             + H  Q  +     E A E ++   Y D   ++                 K+      
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCF 305
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
                   AI+  S  L  +P N+  L  RA  Y     Y EAI+DY+ A
Sbjct: 306 SKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETA 355

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A S+L +  EA++ ++K  E
Sbjct: 49  FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 112/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    +++     +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 43  RATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Query: 447 S-------------AGEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGI 491
           S             A E  + R QA  A    +   AI  L K LE     A++   R  
Sbjct: 103 SEQEEKEAESQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
             + H  Q  +     E A E ++   Y D   ++                 K+      
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCF 282
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
                   AI+  S  L  +P N+  L  RA  Y     Y EAI+DY+AA
Sbjct: 283 SKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAA 332

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP      K +G      G+  +A++  ++A++  P  A +   R     K  +F  A++
Sbjct: 12  NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIG 531
              ++LD  N  A   LG A    G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   +  K +G      G+   A++  ++A++ +P +A +   R     K  +F  A++
Sbjct: 9   NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++LD +    Y      L ++ E+ KA+ A+  A+Q+D +  EA
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 98  LDPTLLQAYILKGCA 112
            DP  ++AYI K  A
Sbjct: 202 KDPNFVRAYIRKATA 216

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 98  LDPTLLQAYILKGCA 112
            DP  ++AYI K  A
Sbjct: 67  KDPNFVRAYIRKATA 81

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E  
Sbjct: 1   GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 507 SACVKLD 513
              ++LD
Sbjct: 61  QKALELD 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	676
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-59
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-57
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-56
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-56
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-51
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-58
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-57
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-56
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-56
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-56
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-53
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-48
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-46
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-31
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-54
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-52
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-53
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-34
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-53
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-40
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-40
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-34
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-53
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-51
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-38
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-37
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-32
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-49
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-47
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-44
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-41
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-25
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-47
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-39
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-38
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-47
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-29
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-45
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-44
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-43
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-42
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-42
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-41
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-41
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-40
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-39
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-36
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-33
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-31
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-30
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-25
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-29
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-27
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-20
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-41
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-25
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-20
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-40
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-40
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-31
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-22
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-31
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-24
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-22
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-24
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-20
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-30
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-23
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-31
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-30
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-23
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-26
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-23
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-25
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-25
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-20
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-23
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-22
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-22
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-20
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-20
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-18
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-17
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-14
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-15
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-14
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-16
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	8e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-10
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-10
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-12
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-11
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-15
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-15
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	9e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-10
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-10
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	7e-13
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	9e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	8e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	7e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-08
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	5e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	5e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	7e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  202 bits (516), Expect = 7e-59
 Identities = 58/264 (21%), Positives = 106/264 (40%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   EA+   G      G+  EAI+    AL  +P+  D             D   AV+
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
              + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A+   ++ + +D  F  AY   G +L       +A+      L + P++      
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 625 RASCYHAIGEYREAIKDYDAALDL 648
            A  Y+  G    AI  Y  A++L
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIEL 266

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  196 bits (501), Expect = 9e-57
 Identities = 56/274 (20%), Positives = 106/274 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++   A V  G    A+  +   L+ +P         G        LE A + + +
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  + + F+
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      + L   +   +  L       G    A + + +AI+L  +F +A+ +L   
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  +  +A +C    L +    + + +    +    G  ++A++     L + P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
                AS     G+ +EA+  Y  A+ +     +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  196 bits (500), Expect = 1e-56
 Identities = 63/263 (23%), Positives = 104/263 (39%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           + G      G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q N
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P         G    ALG   EA     KA+E +PN A      G V     +   A+  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
               V LD     AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +  
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             + A++  ++ + +   F  AY      L   G   +A    ++ L + P++ + L   
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 626 ASCYHAIGEYREAIKDYDAALDL 648
           A+     G   EA++ Y  AL++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEV 334

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  195 bits (498), Expect = 2e-56
 Identities = 49/262 (18%), Positives = 97/262 (37%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                    +   +       +K++P+  EA    G     + +L+ AI  +  A++  P
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +     A  A G+   A+Q    AL++ P+   +  + G +         A    
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++       A++ LG   ++ GE   A     KA+ LD NFL+A+ +L    ++   
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++A+    + L +    +  +     + +  G    AI      + + P   +     A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 627 SCYHAIGEYREAIKDYDAALDL 648
           +     G   EA   Y+ AL L
Sbjct: 279 NALKEKGSVAEAEDCYNTALRL 300

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  181 bits (462), Expect = 3e-51
 Identities = 47/254 (18%), Positives = 99/254 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
              R   G      G+   A + + + ++  P +  A    G     Q E+  AI  F +
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A+  +P+  +A+   G           A+    +AL   PN A +      V ++    +
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A++     ++L      AY  L  AL   G   +AE+ +  A++L     ++  +L   
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  N E+A+   ++ L +   F+ A+     +L   G+ ++A+      + I P+  +
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 621 CLYLRASCYHAIGE 634
                 +    + +
Sbjct: 375 AYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  A++  +  L          +       L   +       KA++  P    A+  
Sbjct: 121 VQAYVSALQY-NPDLYCVR-----SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 109 KGCAFSALGRKEEALSVWEK 128
            GC F+A G    A+  +EK
Sbjct: 175 LGCVFNAQGEIWLAIHHFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + ++  A+R+        Y      N A         +  ++    ALQ +P L      
Sbjct: 87  IEHYRHALRL-KPDFIDGY-----INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G    ALGR EEA + + K
Sbjct: 141 LGNLLKALGRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           S    + AI+  + LLA++Y      N    Y +    +  I     AL+L P  +  YI
Sbjct: 52  SAHFSTLAIKQ-NPLLAEAY-----SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105

Query: 108 LKGCAFSALGRKEEALSVWEK 128
               A  A G  E A+  +  
Sbjct: 106 NLAAALVAAGDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + +AI +       +Y     CN A    +           + AL+L PT   +   
Sbjct: 257 IDTYRRAIEL-QPHFPDAY-----CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310

Query: 109 KGCAFSALGRKEEALSVWEK 128
                   G  EEA+ ++ K
Sbjct: 311 LANIKREQGNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+R+     A S       N A    +    +  +R   KAL++ P    A+       
Sbjct: 296 TALRL-CPTHADSL-----NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 114 SALGRKEEALSVWEKGYEHAL 134
              G+ +EAL      Y+ A+
Sbjct: 350 QQQGKLQEAL----MHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 41  IELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +P L +AY   G  +   G+ +EA+  +  
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ +     A  +      N A  Y +  L    I    +A++L P    AY     A 
Sbjct: 228 RALSL-SPNHAVVH-----GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

Query: 114 SALGRKEEALSVWEK 128
              G   EA   +  
Sbjct: 282 KEKGSVAEAEDCYNT 296

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D     +Y      N      +  +    +    +AL L P     +    C +
Sbjct: 194 KAVTL-DPNFLDAY-----INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 114 SALGRKEEALSVWEK 128
              G  + A+  + +
Sbjct: 248 YEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 9e-06
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KAI       A ++      N    ++        I   +KA+ LDP  L AYI  G   
Sbjct: 160 KAIET-QPNFAVAW-----SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 114 SALGRKEEALSVWEK 128
                 + A++ + +
Sbjct: 214 KEARIFDRAVAAYLR 228

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  202 bits (516), Expect = 8e-58
 Identities = 36/263 (13%), Positives = 70/263 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

Query: 626 ASCYHAIGEYREAIKDYDAALDL 648
                A+   +  +     A  L
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGL 441

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  199 bits (509), Expect = 7e-57
 Identities = 36/263 (13%), Positives = 72/263 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++A +    +A    
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A    +   Q L 
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 626 ASCYHAIGEYREAIKDYDAALDL 648
                A+   +  +     A  L
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGL 373

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  199 bits (508), Expect = 1e-56
 Identities = 34/269 (12%), Positives = 72/269 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +       + + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654
                A+   +  +     A  L  + + 
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVV 413

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  199 bits (507), Expect = 1e-56
 Identities = 35/266 (13%), Positives = 69/266 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE 392

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +   
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+      +   D AL    +
Sbjct: 453 GGGRPALESIVAQLSRPDPALAALTN 478

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  198 bits (505), Expect = 3e-56
 Identities = 33/264 (12%), Positives = 68/264 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316

Query: 626 ASCYHAIGEYREAIKDYDAALDLE 649
                A+   +  +     A  L 
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLT 340

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  189 bits (482), Expect = 5e-53
 Identities = 38/264 (14%), Positives = 73/264 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            RG     E  +A   ++    L   P    A+      +     ++  +    +A    
Sbjct: 43  KRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +          +   A +  
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 223 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 282

Query: 626 ASCYHAIGEYREAIKDYDAALDLE 649
           +    A+   +  +     A  L 
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLT 306

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  175 bits (445), Expect = 6e-48
 Identities = 36/265 (13%), Positives = 67/265 (25%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +       +     +   P
Sbjct: 10  WSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A       + AL      +  L +A    P     +          +     +  L
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  E   A         ++   +       +A  L    + A        Q L  
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +    
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 627 SCYHAIGEYREAIKDYDAALDLELD 651
               A+   +  +     A  L   
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQ 274

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  171 bits (434), Expect = 2e-46
 Identities = 31/233 (13%), Positives = 59/233 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
             ++ L  L Q   +  +   A    G     L      +      L    ++
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  126 bits (317), Expect = 7e-31
 Identities = 28/200 (14%), Positives = 52/200 (26%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
               +   ARA       A +     L+ +      + +RG V               A 
Sbjct: 5   HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           + L  E   A         ++   ++      +A  L    + A        Q L   ++
Sbjct: 65  LNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQR 124

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
            L  L Q   +      A          L   +  +  L    G+ P  +  +       
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184

Query: 630 HAIGEYREAIKDYDAALDLE 649
            A+   +  +     A  L 
Sbjct: 185 QALETVQRLLPVLCQAHGLT 204

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 10/139 (7%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E+   +     A +       A E     +QLD   L          +    + +A+   
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKI-----AKRGGVTAVEAVHAW 56

Query: 575 QQVLY-----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           +  L      +      A          L   ++ +  L    G+ P  +  +       
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116

Query: 630 HAIGEYREAIKDYDAALDL 648
            A+   +  +     A  L
Sbjct: 117 QALETVQRLLPVLCQAHGL 135

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +A   L      +       +       LE  + ++    +A  L P  + A       
Sbjct: 368 CQAHG-LTPEQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 113 FSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
             AL   +  L V  +          A+  +   +  LE +   L+    
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQDR 157
           A         AL   +  L V  +          A+  +   KQ LE ++ LL    Q  
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

Query: 158 SVTCEY 163
            +T E 
Sbjct: 406 GLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       + +     LE  + ++    +A  L P  + A    G   
Sbjct: 267 QAHG-LTPQQVVAI-----ASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+      KQ LE ++ LL  
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L    +A   L      +       +       LE  + ++    +A  L P  + A   
Sbjct: 92  LPVLCQAHG-LTPQQVVAI-----ASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 109 KGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
                 AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 199

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L      + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
           A    G    AL   +  L V  +
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       +       LE  + ++    +A  L P  + A        
Sbjct: 233 QAHG-LTPQQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+  +   KQ LE ++ LL  
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           ++  I +       LE  + ++    +A  L P  + A         AL   +  L V  
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 128 K------GYEHALHQSADLKQFLE-LEELLTA 152
           +          A+      KQ LE ++ LL  
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  188 bits (480), Expect = 4e-54
 Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 31/295 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ I  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
                 A  +RG      G+  EA  D  K L+  P+  +       +            
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR------------GLLLHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +                  L  
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDL 648
            G++  A     S +  +PS  E           C+    +  EAI+     L +
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  183 bits (467), Expect = 3e-52
 Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 31/299 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    +++     +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 447 SAGEAWKRRGQARAA---------------LGESVEAIQDLSKALEFEPNSADILHERGI 491
           S  E  +   Q   A                 +   AI  L K LE     A++   R  
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222

Query: 552 EAWGHLTQF------------YQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLL 595
             + H  Q                      A    + V+  +        ++        
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282

Query: 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
               +  +AI+  S  L ++P N+  L  RA  Y     Y EAI+DY+AA +   +  +
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  154 bits (392), Expect = 8e-42
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 15/214 (7%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E     G+   A G+  +A+     A++ +P++    + R  V        AA+ DL+  
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF--------- 560
           + L  +  +A    G  L   G+  +AE+   K ++ + +  E     +Q          
Sbjct: 64  IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123

Query: 561 ------YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
                   D A+   A+  L ++L +    ++   LR       G+ +KAI DL +   +
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              N E  Y  ++ Y+ +G++  ++ +    L L
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  144 bits (366), Expect = 3e-38
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
           K+  +    S+ +   +   Y +AI+  D+IL+      E    R      + E   AIS
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD------------ 484
           D   A +      EA+ +       LG+   ++ ++ + L+ + +               
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAH 540
            L E      +   +  A     + +K +         +   +    S   +  +A    
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            + +Q++ + + A     + Y      ++A++  +     ++   +           L Q
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 601 HKK 603
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  123 bits (312), Expect = 5e-31
 Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 15/198 (7%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            +   E G           A+    A V  D +N  AY        ++G+ K A     K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----- 597
            I L  +F  A              ++A +  ++VL  +    +       L+       
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 598 ----------LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
                        +  AI  L   L +   + E   LRA C+   GE R+AI D  AA  
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 648 LELDSMEKFVLQCLAFYQ 665
           L+ D+ E F      +YQ
Sbjct: 183 LKSDNTEAFYKISTLYYQ 200

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  105 bits (263), Expect = 1e-24
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF- 427
            +   SK KS + +            G +  ++S   + LK D  +          +   
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 428 -----------QRELEAAISDFTEAIQSNPSAGE----AWKRRGQARAALGESVEAIQDL 472
                            A S +   +++ PS  E    + +R     +   + VEAI+  
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           S+ L+ EP++ + L +R       + ++ A++D  A  + ++ ++     L  A   + +
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 533 YKK 535
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100
           L     ++ A    +S++        Y ++       C+S+ E     IR C + LQ++P
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303

Query: 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
             + A   +  A+      +EA+  +E   EH
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K + L      A + 
Sbjct: 23  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAA 153
           +G      G+ +EA   ++K        +      + L +  E++ L + A
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALH 135
           A+      +  LG  E +LS         L 
Sbjct: 190 AFYKISTLYYQLGDHELSLSE----VRECLK 216

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 39  ARIELAKLC-SLRNWSKAIRILD----------------SLLAQSYEIQDICNRAFCYSQ 81
           AR++   L        +A                     S L ++ E+Q + ++A     
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132

Query: 82  LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
              +   I   DK L++     +   L+   F   G   +A+S      + A  
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD----LKAASK 182

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           ++R  S+ +++ +     +       +RA  Y   E++   I+D + A + +    Q   
Sbjct: 291 AIRICSEVLQM-EPDNVNAL-----KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344

Query: 108 LKGCAFSALGRKEE 121
               A   L + ++
Sbjct: 345 GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 46  LCSLRNWSKAIRILDSLLA---QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102
                   KAI  L +       + E       +  Y QL  H+  + +  + L+LD   
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEA--FYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

Query: 103 LQAYILKGCAFSALGRKEEALSVWEKG-YEHALHQSADLKQFLELE 147
            + +             E A  +   G Y  A    +  +  ++ E
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT---SKYESVMKTE 264

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  188 bits (479), Expect = 4e-53
 Identities = 60/295 (20%), Positives = 105/295 (35%), Gaps = 31/295 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ IQ 
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---------------LHER 489
                 A  +RG      G+  EA  D  K L+  P+  +                L  +
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL------------LHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +     +            L  
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDL 648
            G++  A     S +  +PS  E           C+    +  EAI+     L +
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  167 bits (424), Expect = 2e-45
 Identities = 50/290 (17%), Positives = 99/290 (34%), Gaps = 38/290 (13%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+    E  Y  +++             E  +  G       +L  A+S F  A+  +P
Sbjct: 9   SGVDLGTENLYFQSMA-----------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP 57

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ RR     A+G+S  A+ DL+K ++ + +      +RG +  K    + A +D 
Sbjct: 58  DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117

Query: 507 SACVKLDKENKSAYTYL---------------GLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              +K +                          L     G+Y  A     K +++     
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           E      + +       KA+  L+    +    ++A++    L + LG H+ ++ ++   
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237

Query: 612 LGIDPSNIECLYLR------------ASCYHAIGEYREAIKDYDAALDLE 649
           L +D  +  C                A      G Y +A   Y++ +  E
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  163 bits (414), Expect = 4e-44
 Identities = 47/306 (15%), Positives = 112/306 (36%), Gaps = 33/306 (10%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTAR 425
              RL RG   + +GK   A   F ++LK +P   E                L  +    
Sbjct: 94  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
               +  AAI+   + ++      E  + R +     GE  +AI DL  A + + ++ + 
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------------LSSIGEY 533
            ++   + ++  D   ++ ++  C+KLD+++K  + +                L   G Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF----YQDLANSEKALECLQQVLYIDKRFSKAYH 589
             A   +   ++ + +  E      +     +       +A+    +VL ++     A  
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            R         + +AI+D  +    + ++ +           + + ++  +DY   L ++
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK--RDYYKILGVK 391

Query: 650 LDSMEK 655
            ++ ++
Sbjct: 392 RNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  142 bits (360), Expect = 8e-37
 Identities = 53/253 (20%), Positives = 92/253 (36%), Gaps = 30/253 (11%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M+       G     +     +++D            E     G+   A G+  +A+   
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQF 49

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
             A++ +P++    + R  V        AA+ DL+  ++L  +  +A    G  L   G+
Sbjct: 50  HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
             +AE+   K ++ + +  E           L  S++                     + 
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQ----SQLIKSDEMQRLRS---------------QA 150

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
           L   G G +  AI  L   L +   + E   LRA C+   GE R+AI D  AA  L+ D+
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

Query: 653 MEKFVLQCLAFYQ 665
            E F      +YQ
Sbjct: 211 TEAFYKISTLYYQ 223

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  134 bits (339), Expect = 5e-34
 Identities = 50/343 (14%), Positives = 107/343 (31%), Gaps = 45/343 (13%)

Query: 326 ESYSKSSISDNKSSDSTESRSKLSFKWDMLK--ETSNEAKRNKKF-----CVTRISKSKS 378
           + + K   S+   ++  E++S+L    +M +    +  A  +  +      + +I +   
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438
              + R  R    + EG+   AIS      K      EA     T      + E ++S+ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 439 TEAIQSNPSAGEAWKRRGQARAA------------LGESVEAIQDLSKALEFEPNSADIL 486
            E ++ +      +    Q +               G   +A       ++ EP+ A+  
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

Query: 487 HE----RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                       K +    A+   S  ++++ +N +A      A      Y +A + +  
Sbjct: 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLG 599
           A + + N  +    L +  + L  S+K        +  + +     KAY    L  H   
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH--- 411

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                           P N +    +        +   A +  
Sbjct: 412 ----------------PDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 23/152 (15%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                  + K   AI +  ++L+ +P    AL  R  A   +   + AI D+  A + N 
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSK------------------ALEFEPNSADILHE 488
           +  +  +   +A+  L +S +                         AL++ P++     E
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE 420

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
           +     KF D  AA E LS     D E +  +
Sbjct: 421 KKKAEKKFIDIAAAKEVLS-----DPEMRKKF 447

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCS----------LRNWSKAIRILD 60
           Y+L     ++ E+ E +++D           ++ KL               ++ A    +
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281

Query: 61  SLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115
           S++        Y ++       C+S+ E     IR C + LQ++P  + A   +  A+  
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341

Query: 116 LGRKEEALSVWEKGYEH 132
               +EA+  +E   EH
Sbjct: 342 EEMYDEAIQDYETAQEH 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K +QL      A + 
Sbjct: 46  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAAKQDR 157
           +G      G+ +EA   ++K               + L +  E++ L + A    
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
           A+      +  LG  E +LS   +
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 17/90 (18%), Positives = 33/90 (36%)

Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL 98
           A  +  K+          +   S L +S E+Q + ++A        +   I   DK L++
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                +   L+   F   G   +A+S  + 
Sbjct: 173 CVWDAELRELRAECFIKEGEPRKAISDLKA 202

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 15/138 (10%)

Query: 8   DSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY 67
            + +        I  +D+++ V    A     R E           KAI  L +      
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC--FIKEGEPRKAISDLKAASKLKN 208

Query: 68  EIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL------------KGCAFS 114
           +  +     +  Y QL  H+  + +  + L+LD    + +                    
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268

Query: 115 ALGRKEEALSVWEKGYEH 132
             GR  +A S +E   + 
Sbjct: 269 RDGRYTDATSKYESVMKT 286

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  190 bits (484), Expect = 4e-53
 Identities = 55/334 (16%), Positives = 104/334 (31%), Gaps = 19/334 (5%)

Query: 345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIF 404
            S L           + A       +       +    + ++  +   +   Y S +S  
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                       AL   G     +  L  A     E+I  +P+   ++       A    
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKEN 291

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
           S E  +   KA++  P      + RG + F  +D+  A ED      L+ EN   Y  L 
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
             L   G++ ++E    +         E      +   D  + + A++       +++  
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

Query: 585 SKAYHLRGLLLH----------------GLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            K +   G L+                    +   AIK L+    +DP + +     A  
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662
              + +  EAI+ ++ +  L     EK      A
Sbjct: 472 KLQMEKIDEAIELFEDSAILARTMDEKLQATTFA 505

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  174 bits (443), Expect = 2e-47
 Identities = 38/277 (13%), Positives = 83/277 (29%), Gaps = 19/277 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI    +     A  +  + +   P    + I      A +   +     F +A+  NP
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +  RGQ    L +   A +D  KA    P +     +   + +K   F  +    
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--------- 557
           +             T+    L+  G++  A + +  A +L+    +    +         
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

Query: 558 -------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
                       D      A++ L +   +D R  +A      L   + +  +AI+    
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              +  +  E L      +    + ++ ++       
Sbjct: 488 SAILARTMDEKLQATT--FAEAAKIQKRLRADPIISA 522

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  163 bits (414), Expect = 2e-43
 Identities = 43/345 (12%), Positives = 98/345 (28%), Gaps = 23/345 (6%)

Query: 326 ESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL 385
              S  S++ +    S E   + +     +K  +    +++      +  + S++  F +
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173

Query: 386 SRGIAQVN----EGKYASAISIFDQILKEDPMYPEA--LIGRGTARAFQRELEAAISDFT 439
                +V+       Y +A ++    L+      +   L+             + +S  T
Sbjct: 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
                  +A  A    G         ++A   L +++   P   +      +     ++ 
Sbjct: 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS 292

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
               +     V L+ E    Y + G     + +YK A+E   KA  L+   +  +  L  
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
                    ++     +         +       +L   G    AIK       ++    
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412

Query: 620 ECLYLRASCYH----------------AIGEYREAIKDYDAALDL 648
           +                             ++  AIK    A +L
Sbjct: 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  155 bits (393), Expect = 1e-40
 Identities = 50/276 (18%), Positives = 88/276 (31%), Gaps = 15/276 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        +  AI  +   ++ DP  P              +LE  I   T+A++  P
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKAL---EFEPNSADILHERGIVNFKFKDFN-AA 502
              +A  RR  A  +LG   +A+ DLS      +F+  S + + ER +     K  N   
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAW 554
            +D     ++   N S  ++ G+  S +          Y  A      A+Q   +  +  
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210

Query: 555 GHL--TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
             +      +        L        + +  + A    G+          A   L   +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            + P         A         +E  K +  A+DL
Sbjct: 271 NLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDL 305

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  153 bits (388), Expect = 5e-40
 Identities = 37/263 (14%), Positives = 85/263 (32%), Gaps = 25/263 (9%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
             +   ++         F + +  +P YP     RG      ++ + A  DF +A   NP
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                + +        G+  E+    ++     P   ++      +     DF+ A++  
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401

Query: 507 SACVKLDKENKSAYTYLGLALS----------------SIGEYKKAEEAHLKAIQLDRNF 550
               +L++  +  +  +G  +                    ++  A +   KA +LD   
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
            +A   L Q    +   ++A+E  +    + +   +             + +K ++    
Sbjct: 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLR---- 515

Query: 611 GLGIDPSNIECLYLRASCYHAIG 633
               DP     + L  + Y A G
Sbjct: 516 ---ADPIISAKMELTLARYRAKG 535

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  139 bits (353), Expect = 2e-35
 Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 18/275 (6%)

Query: 395 GKYASAISIFDQILK----EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           G + +      Q+      +   Y   L  RG      +    AI  +  AI+ +P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-C 509
            +        + G+  + I+  +KALE +P+ +  L  R   N    +F  A+ DLS   
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 510 VKLDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-- 564
           +  D +  S    L   L+        +   +   +  Q+  +          F   L  
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180

Query: 565 ------ANSEKALECLQQVLYIDKRFSKAYHL--RGLLLHGLGQHKKAIKDLSSGLGIDP 616
                 +N + A   L   L      +   +L    LL      +   +   +    +  
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240

Query: 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
           +    L      +       +A      +++L   
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  138 bits (349), Expect = 7e-35
 Identities = 45/282 (15%), Positives = 91/282 (32%), Gaps = 15/282 (5%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTAR-AFQRELEAAIS 436
               L R  A  + G +  A+     +           E ++ R   + A +   E    
Sbjct: 93  SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHE 488
           D     Q  PS        G   + L             A   LS AL+   ++ D  + 
Sbjct: 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 489 RGIVNFK--FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                       +++ +   +    L +    A  Y G+          A+    ++I L
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                 ++  L     D  NS++  +  Q+ + ++  +   Y+ RG +   L  +K A +
Sbjct: 273 HPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           D      ++P N+      A   +  G++ E+   ++     
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  137 bits (347), Expect = 1e-34
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        Y +A   F +    +P      I        Q +   + + F E     P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF---------- 496
           +  E      +     G+   AI+    A   E     I    G +  K           
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 497 ------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
                 + FNAA++ L+   +LD  ++ A   L      + +  +A E    +  L R  
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
            E     T  + + A  +K L     +    +     Y  +G+L
Sbjct: 496 DEKLQATT--FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.6 bits (155), Expect = 9e-11
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435
            K+  +  + S+   Q++E K+ +AI +  +  + DP   +A IG    +    +++ AI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             F ++     +  E  +    A AA  +  + ++           +      +G++
Sbjct: 483 ELFEDSAILARTMDEKLQATTFAEAAKIQ--KRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 8/150 (5%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  AI + D      Y      N + CY      + VI    KAL++ P   +A + 
Sbjct: 45  IKYYQYAIEL-DPNEPVFY-----SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98

Query: 109 KGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVS 166
           +  A  +LG   +A+        +     A ++  LE      A K   +     E   S
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 167 NSMSSLTVSESGLNANDKMSETSENHNKSD 196
             + S T   S     D   E S  +  S+
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + +     +Y      +R   Y  L+ +K+   D  KA  L+P  +  YI   C  
Sbjct: 301 KAVDL-NPEYPPTY-----YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354

Query: 114 SALGRKEEALSVWEK 128
              G+  E+ + + +
Sbjct: 355 YKQGKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 14/83 (16%), Positives = 26/83 (31%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                N   A  +L   +            A   +  E  +   +   KA+ L+P     
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +  L   + A   ++K
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             ++ KA  + +      Y        A    +           ++     PTL +    
Sbjct: 330 KEDFQKAQSL-NPENVYPY-----IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +  G  + A+  ++ 
Sbjct: 384 FAEILTDRGDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 54  KAIRI----------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
            A R+          +  L+ ++  +    ++       E     I+   KA +LDP   
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           QA I        + + +EA+ ++E 
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                +              +++ L PT   +YI      +     +E    ++K
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 35  SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC---NRAFCYSQLELHKHVIRD 91
               + +E++ + +  N+  A  +L   L + Y   D              +++  ++  
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                 L      A    G          +A  + ++
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  189 bits (481), Expect = 8e-53
 Identities = 47/269 (17%), Positives = 95/269 (35%), Gaps = 10/269 (3%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             +   +   ++  K       +L   G  +  + +   A  D  +AI+  P    ++  
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIY 275

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
                A   +S E      KAL+ + N++ + + RG +NF  ++++ A +D     +LD 
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           EN   Y  L        ++   E    +A +      E      +   D  + +KAL+  
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395

Query: 575 QQVLYIDKRFSKAYHLRGLLLH---------GLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
              + ++ +    Y     L+           +    +A   L     +DP + +     
Sbjct: 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654
           A       +  EAI  ++ + DL     E
Sbjct: 456 AQMKLQQEDIDEAITLFEESADLARTMEE 484

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  186 bits (473), Expect = 1e-51
 Identities = 47/340 (13%), Positives = 116/340 (34%), Gaps = 16/340 (4%)

Query: 317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF-KWDMLKETSNEAKRNKKFCVTRISK 375
            +        +Y +S+ +D +  +   +  K S   +D   E+  +A R  +  + + ++
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 376 SKSISVDFRL---SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
            + +     +     GI +  +     A     + ++  P    + I      A + +  
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDST 287

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
              + F +A++ + +    +  RGQ    L    +A +D  KA E +P +     +   +
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
            ++   F+      S   +   E      +    L+   ++ KA + +  AI+L+     
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407

Query: 553 AWGHL---------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            +  +               + N  +A   L++   +D R  +A      +        +
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
           AI        +  +  E L      +    + ++ I+   
Sbjct: 468 AITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSDP 505

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  160 bits (407), Expect = 1e-42
 Identities = 45/290 (15%), Positives = 88/290 (30%), Gaps = 26/290 (8%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-------------EL 431
           L R + +    K        D                   +                 + 
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARA------------ALGESVEAIQDLSKALEFE 479
           E   +++ E+ +++           +               A     E +   ++  + +
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
              A  L   GI  F   D   A ED+   ++L     ++Y Y+ L ++   +  +    
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNY 292

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA++LD N    + H  Q    L N ++A +   +   +D      Y     L +   
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           +        S      P   E     A       ++ +A+K YD A++LE
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  147 bits (373), Expect = 4e-38
 Identities = 42/290 (14%), Positives = 90/290 (31%), Gaps = 30/290 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  AI  ++  L+     P              +L+  +   T+A++  P
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKA---LEFEPNSADILHERGIVNFKFKDFNAAV 503
              +   RR  A   LG+  +A+ DLS      +F   S + + ER +            
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 504 EDLSACVKLDKENKSAYTYLGL-------------ALSSIGEYKKAEEAHLKAIQLDRNF 550
            D+        E  +                    +   I + +     + ++ + D+  
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190

Query: 551 LEAWGHLTQ------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
           +    +L +            F +     E+ L+   +   + ++ + +    G+     
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                A +D+   + + P  +      A       +  E    +D AL L
Sbjct: 251 NDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKL 299

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  144 bits (365), Expect = 5e-37
 Identities = 43/307 (14%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA---IQ 443
                V+ G     + +  + L+  P Y + L+ R +A     +   A+ D +       
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI------------ 491
            N ++ E    R   + A+ +  E   D+  A       +    +               
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164

Query: 492 -VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS------------IGEYKKAEE 538
              F          +     + DKE  +  + L                     +++  +
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224

Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
            + +  +L      +  H   F     +   A E +++ + +  R + +Y    L++   
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADR 283

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
               +        L +D +N    Y R      +  Y +A KD+D A +L+ +++  ++ 
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343

Query: 659 QCLAFYQ 665
                Y+
Sbjct: 344 LACLAYR 350

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  129 bits (326), Expect = 6e-32
 Identities = 36/270 (13%), Positives = 75/270 (27%), Gaps = 29/270 (10%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           E   Y  AL  +G      ++ + AI  +  A++        +        ++G+  + +
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVV 59

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CVKLDKENKSAYTYL--GLA 526
           +  +KALE +P+ + +L  R   N     F  A+ DLS   +  D  + S    L   L 
Sbjct: 60  EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

Query: 527 LSSIGEYKKAEEAHLKAIQLD-------------RNFLEAWGHLTQFYQDLANSEKALEC 573
             ++ + K+       A                 +            +  +   E     
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 574 LQQVLYIDKRFSKAY------------HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             +    DK                               ++ +   +    +       
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLELD 651
           L           +   A +D   A++L   
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 37/162 (22%)

Query: 513 DKENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           +K+  + A    G       +Y  A + +  A++L  +                      
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED---------------------- 38

Query: 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
                           Y         +G  KK ++  +  L + P   + L  RAS    
Sbjct: 39  -------------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85

Query: 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYY 673
           +G++ +A+ D      L  D  +  +   L        M   
Sbjct: 86  LGKFADAMFDLSVLS-LNGDFNDASIEPMLERNLNKQAMSKL 126

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
           N + CY  +   K V+    KAL+L P   +  + +  A   LG+  +A+        + 
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
               A ++  LE      A  +
Sbjct: 104 DFNDASIEPMLERNLNKQAMSK 125

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+++ DS  +  Y      +R      L+ +    +D DKA +LDP  +  YI   C  
Sbjct: 295 KALKL-DSNNSSVY-----YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348

Query: 114 SALGRKEEALSVWEK 128
               + ++  +++ +
Sbjct: 349 YRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV---------IRDCDKALQLD 99
           L+ +  AI + ++ L   Y        A    +  L                 +KA +LD
Sbjct: 392 LKQYDLAIEL-ENKLDGIY-----VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA--LHQSADLKQFLELEELLTAAKQD 156
           P   QA I            +EA++++E+  + A  + +      F E  ++    + D
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 13/83 (15%), Positives = 24/83 (28%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                +   A   +   +     +      A   +            DKAL+LD      
Sbjct: 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G     L   ++A   ++K
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDK 329

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            +++ KA   LD      Y        A    +            +A +  P   +    
Sbjct: 324 GKDFDKAKE-LDPENIFPY-----IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +     ++AL  ++ 
Sbjct: 378 FAEILTDKNDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +                D  KA++L P  + +YI      +      E  + ++K
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDK 295

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  170 bits (434), Expect = 9e-49
 Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 2/240 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G       ++  AI  +++  +        L  R  A   + E E AIS   +A++   
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +K   ++ A +G +   + DL K +E+   S    H    +  K ++    ++  
Sbjct: 70  EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKA 128

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
            A   ++ E        G    +  ++  A +A+ + I+        + +       L +
Sbjct: 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             +A+    + +  D  F +AY  +      + ++  A++ L +    D         R 
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  168 bits (427), Expect = 9e-48
 Identities = 38/254 (14%), Positives = 87/254 (34%), Gaps = 2/254 (0%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               +     G      R+ + AI  + +A + +         R  A    GE   AI  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+ A+E                 +  +    + DL   ++  +++ + +      L+ + 
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLR 119

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
             +K  +       ++    E      + Y   ++   A++   +++      ++ Y  R
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
              L  L    +AI D +  +  DP+ +     +A+   A+ EY  A++  DAA   + +
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 652 SMEKFVLQCLAFYQ 665
                  + +    
Sbjct: 240 VNNGSSAREIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  156 bits (398), Expect = 1e-43
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 1/216 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R  A+  +G+Y +AIS  +  +++             + A        + D  + I+   
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            +     R       L  + + ++         P  A+     G   F   D+  AV+  
Sbjct: 104 KS-LTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +  +K   E+   Y+    AL+ +  + +A     KAI+ D NF+ A+         +  
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              ALE L      D   +     R +        +
Sbjct: 223 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +++ I+      A+ Y      NRA   ++L      I DC+KA++ DP  ++AYI 
Sbjct: 159 VKAYTEMIKR-APEDARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212

Query: 109 KGCAFSALGRKEEALSVWEKGYEH 132
           K  A  A+     AL   +     
Sbjct: 213 KATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           NRA    +   ++  I   + A++    +   Y +   +F+ +G     L   +K
Sbjct: 43  NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L +  K I      L            A   ++L   +  ++  +    ++P   +   L
Sbjct: 92  LGDLKKTIEYYQKSLT-------EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +G  +        A+  + +
Sbjct: 145 EGKEYFTKSDWPNAVKAYTE 164

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L+       + +   A+             Y       + ++   + ++  P   + Y  
Sbjct: 125 LKKAEAEAYV-NPEKAEEA-----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +  A + L    EA++   K
Sbjct: 179 RAAALAKLMSFPEAIADCNK 198

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +   + A+      +   Y        +  ++++    H + D  K ++     L  +  
Sbjct: 58  ISTLNDAVEQ-GREMRADY-----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR- 110

Query: 109 KGCAFSALGRKEEALSVWEK 128
                + L   E+ L   E 
Sbjct: 111 TADILTKLRNAEKELKKAEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + + +KAI   D    ++Y       +A     ++ +   +   D A   D  +      
Sbjct: 193 IADCNKAIEK-DPNFVRAY-----IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 109 KGCAFSALGRKE 120
           +          +
Sbjct: 247 REIDQLYYKASQ 258

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  168 bits (427), Expect = 1e-47
 Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 14/271 (5%)

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD- 437
           ++ D              YA AI +F+++  +    P     R        + + A  D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 438 --FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
             +   + +  +    ++  G+     G+   AIQ    A++ +    D+  + G   + 
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
             +F  A++ +   ++    +   +  LG A     EY KA+ + +K ++L  N    + 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 556 HLTQFYQDLANSEK---ALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKA 604
              +         K   A    ++++ +             +A               KA
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
                + L +DP+N + +            +
Sbjct: 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  157 bits (399), Expect = 9e-44
 Identities = 39/250 (15%), Positives = 67/250 (26%), Gaps = 14/250 (5%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M  +                 AI  F +      ++   + RR      L +   A +D+
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 473 S---KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
                 +      +      G +  K    + A++   A V  D      Y  +G    +
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G +  A +   K I+      + +  L Q Y       KA     +VL +       Y 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 590 LRGLLLHGLGQHKK---AIKDLSSGLGIDPSN--------IECLYLRASCYHAIGEYREA 638
            R           K   A       + +            IE     A  Y    +  +A
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 639 IKDYDAALDL 648
              +   L L
Sbjct: 241 DAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  148 bits (377), Expect = 9e-41
 Identities = 35/213 (16%), Positives = 78/213 (36%), Gaps = 6/213 (2%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           +   R            EAI+  +K    + NS  I + R +  ++   ++ A +D+   
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 510 VK---LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                  K   + + Y G  L   G+   A + +  A+  D   L+ +G +  ++ +  N
Sbjct: 64  FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
              A++ +++ +       K ++  G   +   ++ KA       L + P+       RA
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 627 SCYHAIG---EYREAIKDYDAALDLELDSMEKF 656
               A     +   A   Y+  +++      K+
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  106 bits (266), Expect = 1e-25
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 3/137 (2%)

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL---E 572
           N          L     Y +A E   K      N    +      Y +LA  + A    E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632
                +   K  S  +   G +L   GQ   AI+   + +  D + ++      S ++  
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121

Query: 633 GEYREAIKDYDAALDLE 649
           G +  AI+  +  +   
Sbjct: 122 GNFPLAIQYMEKQIRPT 138

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+   D+     Y           +         I+  +K ++   T  + +   G A+
Sbjct: 99  AAVDR-DTTRLDMY-----GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152

Query: 114 SALGRKEEALSVWEK 128
                  +A S + K
Sbjct: 153 YYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
             +       +  +             +       I+    A+  D T L  Y   G  F
Sbjct: 65  SKVNA-TKAKSADF-----EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 114 SALGRKEEALSVWEK 128
              G    A+   EK
Sbjct: 119 YNKGNFPLAIQYMEK 133

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    +   +   I   +K           Y  +   +  L + + A    E  Y   
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-YFSK 66

Query: 134 L 134
           +
Sbjct: 67  V 67

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCD---KALQLDPT 101
           L    N+++AI + + L A+ Y    I   RA CY +L  +    +D +     +     
Sbjct: 13  LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72

Query: 102 LLQAYILKGCAFSALGRKEEALSVWEK 128
               +   G      G+   A+  ++ 
Sbjct: 73  KSADFEYYGKILMKKGQDSLAIQQYQA 99

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  170 bits (432), Expect = 1e-47
 Identities = 42/279 (15%), Positives = 83/279 (29%), Gaps = 10/279 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++D  +S          +     +   ++++DP +   L           +         
Sbjct: 21  NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           + +   PS   +W   G     +G   E A + LSKA   E          G       +
Sbjct: 81  KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
            + A+       +L K       Y+GL        K AE    +A+ +          + 
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 559 QFYQDLANSEKALECLQQVLYIDK---------RFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                    + A +     L   K         ++    +  G +   L ++ +A+    
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L + P N          +  +G +  A+  +  AL L
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  145 bits (369), Expect = 6e-39
 Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 10/257 (3%)

Query: 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461
           ++  + +       + ++       +  + +      +  ++ +P               
Sbjct: 9   TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAY 520
           L ++ E      K ++  P++       G            A   LS    L+K    A+
Sbjct: 69  LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
              G + +   E+ +A  A+  A QL +       ++   Y    NS+ A     Q L I
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---------NIECLYLRASCYHA 631
                   H  G++    G+ K A K     L    +             L         
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 632 IGEYREAIKDYDAALDL 648
           + +Y EA+  +  AL L
Sbjct: 249 LKKYAEALDYHRQALVL 265

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  144 bits (366), Expect = 1e-38
 Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 25/248 (10%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K   A     +    +  Y  A I  G + A + E + A++ +  A Q            
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G        S  A +  S+AL   P    ++HE G+V F+  ++  A +     ++  K 
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
             +                               +     +L    + L    +AL+  +
Sbjct: 226 IGNE-------------------------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260

Query: 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
           Q L +  + +  Y   G +   +G  + A+    + LG+   +   + +   C       
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320

Query: 636 REAIKDYD 643
            EA    D
Sbjct: 321 SEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  134 bits (339), Expect = 7e-35
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 10/226 (4%)

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
           + +  E  I +  + +Q N    +      +      +     +  S  +E +P  A  L
Sbjct: 3   YNKPSETVIPESVDGLQENL---DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEAHLKAIQ 545
                   +    N         V L   N  ++  +G     +G   + A     KA  
Sbjct: 60  PVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119

Query: 546 LDRNFLEAW---GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           L++ +  AW   GH    +   +  ++A+        + K         GL        K
Sbjct: 120 LEKTYGPAWIAYGHS---FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            A +  S  L I P +   ++         GE++ A K +  AL+ 
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 10/88 (11%), Positives = 25/88 (28%)

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
           ++ +   + + +   +             +     K   K  S  +  DP +  CL +  
Sbjct: 4   NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63

Query: 627 SCYHAIGEYREAIKDYDAALDLELDSME 654
                + +  E        +DL   +  
Sbjct: 64  GTLVELNKANELFYLSHKLVDLYPSNPV 91

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQL-ELHKHVIRDCDKALQL 98
           L  L   ++   +   L+        S+           Y  +   ++H  R   KA  L
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSW-----FAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           + T   A+I  G +F+     ++A++     Y  A 
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAA----YFTAA 152

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                ++    ++   ++ +  +    +        +L     +     K + L P+   
Sbjct: 32  HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

Query: 105 AYILKGCAFSALGRK-EEALSVWEK 128
           ++   GC +  +G K E A     K
Sbjct: 92  SWFAVGCYYLMVGHKNEHARRYLSK 116

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
              L+ +++A+      L              + +S +   ++ +     AL L      
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305

Query: 105 AYILKGCAFSALGRKEEAL 123
           +  + G          EA 
Sbjct: 306 SVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 9/75 (12%), Positives = 21/75 (28%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
               I +S+      +  + + A  +      K   +     ++ DP       +     
Sbjct: 7   SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66

Query: 114 SALGRKEEALSVWEK 128
             L +  E   +  K
Sbjct: 67  VELNKANELFYLSHK 81

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R  SKA   L+     ++           ++    H   +     A QL        + 
Sbjct: 111 RRYLSKATT-LEKTYGPAW-----IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G  +      + A    E+ +  AL
Sbjct: 165 IGLEYGLTNNSKLA----ERFFSQAL 186

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
            + +  A+  + ++  +    +      N      +L+ +   +    +AL L P     
Sbjct: 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           Y   G   S +G  E A+      +  AL
Sbjct: 273 YSAIGYIHSLMGNFENAVDY----FHTAL 297

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  175 bits (444), Expect = 4e-47
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 7/301 (2%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY 414
           L +TS+E +  +             S D  L +        ++   ++I  +IL+ DP  
Sbjct: 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +       +     E         + +  +P     W   G     + +  EA +  SK
Sbjct: 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +   +P                 + + A+   +   +L +     Y +LG+    +G   
Sbjct: 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKA 587
            A E    +  L +        L     + ++ + A+   Q  L +       +K ++  
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
           +   G     L  +  AI  L+ GL +  ++       A  Y        AI     +L 
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

Query: 648 L 648
           +
Sbjct: 579 I 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  164 bits (416), Expect = 2e-43
 Identities = 37/276 (13%), Positives = 85/276 (30%), Gaps = 7/276 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISI-FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
            +L        + ++   + + +    KED  +  +L      +    +      D+  +
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           I     + +    +          ++ +   +K LE +P + D+         +  + N 
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW---GHLT 558
                +  V    E    +  +G+    + +  +A     K+  +D  F  AW    H  
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS- 416

Query: 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
             +      ++A+        + +     Y   G+    LG    A + L S   +   +
Sbjct: 417 --FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
              L           + + AI  +  AL L   +  
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  163 bits (415), Expect = 3e-43
 Identities = 35/270 (12%), Positives = 79/270 (29%), Gaps = 7/270 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
              + + +          +   +       + L+ +      +      ++  T+ ++ +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P   + +     +    GE  +     +  ++  P  A      GI        + A   
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
            S    +D +   A+     + +  GE+ +A  A+  A +L +     +  L   +  L 
Sbjct: 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL-------SSGLGIDPSN 618
           N   A E LQ    + +      +  G++       + AI                +   
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648
                     Y  +  Y  AI   +  L L
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL 545

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  157 bits (399), Expect = 5e-41
 Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 7/250 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +    G+      I + ++   P      +  G       ++  A   F+++   +P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
             G AW     + A  GE  +AI   + A      +       G+ + +  +   A E L
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQ 559
            +   L + +      LG+   +  + + A      A+ L +        +   W +L  
Sbjct: 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
            Y+ L   + A++ L Q L +    +  +    L+         AI  L   L I P+ I
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584

Query: 620 ECLYLRASCY 629
               L     
Sbjct: 585 MASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  156 bits (396), Expect = 9e-41
 Identities = 43/324 (13%), Positives = 104/324 (32%), Gaps = 9/324 (2%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRL--SRGIAQVNEGKYASAISIFDQILKEDP 412
           L   +N  ++++K     + +   I ++  +   RG    N   +  A   + + L  D 
Sbjct: 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 413 MYPEAL--IGRGTARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
              EA   +          E +  +  +++   + + +   +       + +  + +   
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +D   ++     S+D+L  +    F    F   +   +  +++D  N   Y     +L  
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            GE  K        +         W  +  +Y  +    +A     +   +D +F  A+ 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
                    G+H +AI   ++   +              +  +G    A +   ++    
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS--YA 469

Query: 650 LDSMEKFVLQCLAFYQVLFDMEYY 673
           L   +  +L  L    V F+    
Sbjct: 470 LFQYDPLLLNELG--VVAFNKSDM 491

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  121 bits (305), Expect = 5e-29
 Identities = 51/360 (14%), Positives = 112/360 (31%), Gaps = 25/360 (6%)

Query: 311 LSSDSASLNDSN-TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC 369
           + S   + N  +   + +Y         +++++ S+        M    +N +       
Sbjct: 12  MQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLK 71

Query: 370 VTRISKSKSISVDFRLSRGIAQ--VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF 427
                 + S+S +  L R      + + +Y  A  + +++L      P            
Sbjct: 72  ERNAQNTDSLSREDYL-RLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCC 129

Query: 428 QRELEAAISDFTEAIQSNPSAG----------------EAWKRRGQARAALGESVEAIQD 471
             +   A    T+    N S+                  A    G+      +   A + 
Sbjct: 130 TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALSS 529
           L +    +   A + + RG V     +F+ A E     + +D +   A+  L     L++
Sbjct: 190 LMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248

Query: 530 IGEYKKAEEAHL-KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
             E+    + +     + D  FL +   L        +  +  E     +   ++ S   
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308

Query: 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             +   L    +    +   +  L IDP N++   L  +  H  GE  +     +  +D 
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  110 bits (276), Expect = 2e-25
 Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 7/184 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +   EG++  AIS +    +         +  G        +  A      +     
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFE-------PNSADILHERGIVNFKFKDF 499
                    G       +   AI     AL             A      G    K K +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +AA++ L+  + L   + + +T + L          A     +++ +  N + A   L +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

Query: 560 FYQD 563
             ++
Sbjct: 593 ALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           L      +K   I + L+      A ++           Y  +       R   K+  +D
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTW-----LAVGIYYLCVNKISEARRYFSKSSTMD 403

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           P    A+I    +F+  G  ++A+S     Y  A 
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISA----YTTAA 434

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 14/90 (15%), Positives = 28/90 (31%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
            V +   ++        + G A      Y +AI   +Q L                   +
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQA 458
           +    AI+   E++  +P+   A     +A
Sbjct: 564 KIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 3/125 (2%)

Query: 5   KLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA 64
            L  ++       +   +    +      +  +  + +   L     +   + I   +L 
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT--LFVRSRFIDVLAITTKILE 333

Query: 65  QS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
              Y +           +      +    +  +   P     ++  G  +  + +  EA 
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 124 SVWEK 128
             + K
Sbjct: 394 RYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 5/197 (2%)

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
           V         ++  P + +         +       A+   ++  +L     S  TYL  
Sbjct: 2   VVKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLAN 61

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
             S+ G + K   A         ++L  W H           + A    ++VL I    +
Sbjct: 62  NTSTDGSFLKERNAQNTDSLSREDYLRLWRH---DALMQQQYKCAAFVGEKVLDITGNPN 118

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
            A+ L   +    G + +A   L+     + S   C YL A C   + +++ A+      
Sbjct: 119 DAFWL-AQVYCCTGDYARAKCLLTKEDLYNRS-SACRYLAAFCLVKLYDWQGALNLLGET 176

Query: 646 LDLELDSMEKFVLQCLA 662
                D      L    
Sbjct: 177 NPFRKDEKNANKLLMQD 193

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 54  KAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            A+ ++    +          N    Y +L+++   I   ++ L L       +      
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559

Query: 113 FSALGRKEEALSVWEK 128
           +        A++   +
Sbjct: 560 YLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R +SK+   +D     ++        A  ++    H   I     A +L       Y+ 
Sbjct: 393 RRYFSKSST-MDPQFGPAW-----IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446

Query: 109 KGCAFSALGRKEEALSVWEKGYE 131
            G     LG    A    +  Y 
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYA 469

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  161 bits (409), Expect = 2e-45
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 3/242 (1%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  +  +      M     +GRG+      + E A   FT+AI+ N      + 
Sbjct: 5   HHHHHHSSGLVPRGSHMASMTGGQQMGRGSE---FGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
                 +++ E   A+    KALE + ++A   +  G V    + +  A +     ++  
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            EN   +  LG  L  + + K A     +A++L+ N  EA         +    ++AL  
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              V   D   + A++  G+        +KA++ L   + I P ++  L+ +    H   
Sbjct: 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

Query: 634 EY 635
            +
Sbjct: 242 HH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  156 bits (398), Expect = 6e-44
 Identities = 50/215 (23%), Positives = 84/215 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +       G Y  A   F + ++E+       I      +   ELE A++ + +A++ + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           SA  A+   G          EA     KAL     + D+ +  G V  K +    A+  L
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              V+L++ +  A    G+ L++ G   +A        + D    +A+ +    Y    N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            EKALE L + + I      A H + LL H    H
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  152 bits (387), Expect = 2e-42
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 4/222 (1%)

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARA----ALGESVEAIQDLSKALEFEPNSADIL 486
           + ++      +    P         G  +       G+  +A +  +KA+E     A   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                +     +   A+      ++LD    +AY   G        YK+A++   KA++ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                + +  L      L   + AL  LQ+ + +++  ++A    G+ L   G   +A+ 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             ++    DP + +  Y     Y       +A++  D A+D+
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 82.9 bits (206), Expect = 5e-18
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           SS   +  +     +   +                +  + EKA E   + +  +K  +  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGR---GSEFGDYEKAAEAFTKAIEENKEDAIP 59

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
           Y     LL  + + ++A+      L +D S     Y   + Y     Y+EA   ++ AL 
Sbjct: 60  YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

Query: 648 LELDSME 654
             +++ +
Sbjct: 120 AGMENGD 126

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  + KA+ + DS  A +Y           Y   E++K      +KAL+        + +
Sbjct: 77  LAFYDKALEL-DSSAATAY-----YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G     L + + AL   ++
Sbjct: 131 LGTVLVKLEQPKLALPYLQR 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + +    ++           C +   +    +       + DP    A+   G  +
Sbjct: 150 RAVEL-NENDTEAR-----FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203

Query: 114 SALGRKEEALSVWEK 128
           +    +E+AL + +K
Sbjct: 204 AYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           +   ++KAI   +   A  Y      N A   S +   +  +   DKAL+LD +   AY 
Sbjct: 42  AAEAFTKAIEE-NKEDAIPY-----INFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 108 LKGCAFSALGRKEEALSVWEK 128
             G  +      +EA  ++EK
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEK 116

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.7 bits (112), Expect = 9e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+R         +             +LE  K  +    +A++L+    +A    G   
Sbjct: 116 KALRA-GMENGDLF-----YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169

Query: 114 SALGRKEEALSVWEK 128
           +  G  +EALS +  
Sbjct: 170 ANEGMLDEALSQFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            +  ++      +        +    S+   ++       KA++ +      YI      
Sbjct: 10  HSSGLVPRGSHMASMTGG--QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 114 SALGRKEEALSVWEK 128
           S++   E AL+ ++K
Sbjct: 68  SSVNELERALAFYDK 82

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  ++      D   A ++      N    Y+  E  +  +   DKA+ + P  + A   
Sbjct: 179 LSQFAAVTEQ-DPGHADAF-----YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 109 KGCAFSALGR 118
           K         
Sbjct: 233 KKLLGHHHHH 242

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  170 bits (432), Expect = 2e-44
 Identities = 33/266 (12%), Positives = 70/266 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +   
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 673

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +     A  L  +
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQE 699

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  167 bits (424), Expect = 2e-43
 Identities = 34/269 (12%), Positives = 71/269 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P     +          +     +  
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPV 655

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 656 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE 715

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P+ +  +   
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654
                A+   +  +        L L  + 
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  165 bits (418), Expect = 1e-42
 Identities = 34/269 (12%), Positives = 70/269 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P+    +   G      +     +  
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 587

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +    A         ++   ++      +A  L    + A        Q L 
Sbjct: 588 LCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+    +  +   
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN 707

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654
                A+   +  +     A  L  D + 
Sbjct: 708 NGGKQALETVQRLLPVLCQAHGLTPDQVV 736

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  164 bits (415), Expect = 3e-42
 Identities = 38/267 (14%), Positives = 75/267 (28%), Gaps = 1/267 (0%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG     E  +AS  ++    L   P    A+      +     ++  +    +A   
Sbjct: 162 AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+   A       + AL      +  L +A    P+    +          +     + 
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            L     L  +   A    G    ++   ++      +A  L  + + A        Q L
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
              ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +  
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 625 RASCYHAIGEYREAIKDYDAALDLELD 651
                 A+   +  +     A  L  D
Sbjct: 402 NGG-KQALETVQRLLPVLCQAHGLTPD 427

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  161 bits (409), Expect = 1e-41
 Identities = 32/269 (11%), Positives = 68/269 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 502 SNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 561

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L  + + A        Q L 
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654
                A+   +  +     A  L    + 
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  160 bits (407), Expect = 2e-41
 Identities = 34/266 (12%), Positives = 72/266 (27%), Gaps = 1/266 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  Q         + +  Q     P    A+      +     ++  +    +     
Sbjct: 401 SNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT 459

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL    + +  L +A    P+    +                +  
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L  + + A        Q L 
Sbjct: 520 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 579

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P+ +  +   
Sbjct: 580 TVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 639

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +     A  L  D
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPD 665

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  158 bits (401), Expect = 1e-40
 Identities = 34/269 (12%), Positives = 70/269 (26%), Gaps = 1/269 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P+    +   G      +     +  
Sbjct: 359 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPV 417

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +   L    + A        Q L 
Sbjct: 418 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALE 477

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +   
Sbjct: 478 TVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASN 537

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654
                A+   +  +     A  L  D + 
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  154 bits (390), Expect = 4e-39
 Identities = 33/266 (12%), Positives = 72/266 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q      +   A+      +     ++  +    +A    
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 689

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +E   A         ++   ++      +A  L  + + A        Q L 
Sbjct: 690 LCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+  + +  +   
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +     A  L  D
Sbjct: 810 IGGKQALETVQRLLPVLCQAHGLTQD 835

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  149 bits (377), Expect = 1e-37
 Identities = 34/262 (12%), Positives = 69/262 (26%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +    +  +     +   P
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP 189

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A       + AL      +  L +A    P     +          +     +  L
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  +   A         ++   ++      +A  L  + + A        Q L  
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +    
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 627 SCYHAIGEYREAIKDYDAALDL 648
               A+   +  +     A  L
Sbjct: 370 GGKQALETVQRLLPVLCQAHGL 391

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  147 bits (373), Expect = 5e-37
 Identities = 31/266 (11%), Positives = 65/266 (24%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASN 843

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +        L  D
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTPD 869

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  144 bits (364), Expect = 6e-36
 Identities = 32/266 (12%), Positives = 67/266 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +   L    + A        Q L 
Sbjct: 758 LCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALE 817

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 818 TVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASN 877

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +        L LD
Sbjct: 878 IGGKQALETVQRLLPVLCQDHGLTLD 903

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  137 bits (346), Expect = 1e-33
 Identities = 36/256 (14%), Positives = 65/256 (25%), Gaps = 2/256 (0%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
            Y   I+   +   ED +          ARA +  L  A       +Q +        +R
Sbjct: 107 TYQHIITALPEATHEDIV--GVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKR 164

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G   A               L   P     +          +     +  L     L   
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPA 224

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
              A         ++   ++      +A  L  + + A        Q L   ++ L  L 
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284

Query: 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
           Q   +      A    G     L   ++ +  L    G+ P  +  +        A+   
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETV 344

Query: 636 REAIKDYDAALDLELD 651
           +  +     A  L  D
Sbjct: 345 QRLLPVLCQAHGLTPD 360

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  129 bits (325), Expect = 4e-31
 Identities = 31/266 (11%), Positives = 66/266 (24%), Gaps = 1/266 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q          A+      +     ++  +    +A    
Sbjct: 672 SNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPV 791

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L ++ + A        Q L 
Sbjct: 792 LCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 852 TVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN 911

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +        L  D
Sbjct: 912 G-GKQALETVQRLLPVLCQDHGLTPD 936

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  127 bits (320), Expect = 1e-30
 Identities = 41/280 (14%), Positives = 76/280 (27%), Gaps = 13/280 (4%)

Query: 382 DFRLSRGIAQVNEGKYASAI-SIFDQILKEDPMYPEALIGRGTARAFQRE-------LEA 433
           D   +  +     G        I  ++      + EAL+G G   A           L  
Sbjct: 44  DASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGT 103

Query: 434 AISDFTEAIQSNPSAGEA-----WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
               +   I + P A         K+   ARA      +A +     L+ +      + +
Sbjct: 104 VAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAK 163

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           RG V        +      A + L      A         ++   ++      +A  L  
Sbjct: 164 RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 223

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             + A        Q L   ++ L  L Q   +      A          L   ++ +  L
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
               G+ P  +  +        A+   +  +     A  L
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGL 323

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 27/246 (10%), Positives = 62/246 (25%), Gaps = 21/246 (8%)

Query: 386  SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            S    +         + +  Q          A+      +     ++  +    +     
Sbjct: 808  SNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 867

Query: 446  PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---- 501
            P    A       +       +A++ + + L        +  ++ +         A    
Sbjct: 868  PDQVVAIASNIGGK-------QALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETV 920

Query: 502  --AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
               +  L     L  +   A         ++   ++      +   L  N + A      
Sbjct: 921  QRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIAS-NG 979

Query: 560  FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
              Q L +    L      L      +   +   + L  LG  + A+  +  GL   P  I
Sbjct: 980  GKQALESIVAQLSRPDPAL------AALTNDHLVALACLGG-RPAMDAVKKGLPHAPELI 1032

Query: 620  ECLYLR 625
              +  R
Sbjct: 1033 RRVNRR 1038

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 30  DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHV 88
             V+A A     + A    L    + + +L      +   +  I +       LE  + +
Sbjct: 190 AQVVAIASNNGGKQA----LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

Query: 89  IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQ 142
           +    +A  L P  + A         AL   +  L V  +          A+      KQ
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305

Query: 143 FLE-LEELLTAAKQ 155
            LE ++ LL    Q
Sbjct: 306 ALETVQRLLPVLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L    + A         AL   +  L V  + + 
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627

Query: 132 H------ALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                  A+      KQ LE ++ LL    Q   +T + 
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 49  LRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           L    + + +L      + E +  I +       LE  + ++    +A  L P  + A  
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739

Query: 108 LKGCAFSALGRKEEALSVWEKG------YEHALHQSADLKQFLE-LEELLTAAKQDRSVT 160
             G    AL   +  L V  +          A+  +   KQ LE ++ LL    QD  +T
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 161 CEYDV 165
               V
Sbjct: 800 LAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +       LE  + ++    +A  L P  + A         AL   +  L V  +
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK----- 128
           +       LE  + ++    +A  L P  + A    G    AL   +  L V  +     
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 129 -GYEHALHQSADLKQFLELEELLTAA 153
                A+      KQ LE  + L   
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPV 350

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L      + + +  I +       LE  + ++    +A  L P  + 
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A    G    AL   +  L V  + + 
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHG 593

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L P  + A    G    AL   +  L V  + + 
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 132 ------HALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
                  A+  +   +    ++ LL    Q   +T + 
Sbjct: 391 LTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 48  SLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY 106
           +L    + + +L         ++  I +       L   + ++    +A  L P  + A 
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534

Query: 107 ILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
              G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 69  IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  I +       LE  + ++    +   L P  + A         AL   ++ L V  +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 129 ------GYEHALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                     A+  +   KQ L  ++ LL    Q   +T + 
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  159 bits (404), Expect = 8e-44
 Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 19/270 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +  P   EA    G  +A   +   AI     A   
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P           +      +  A+  L   L  +P    +       +    D      
Sbjct: 85  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDL----- 139

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                                  ++  EY++       A++++ N  +    L   Y   
Sbjct: 140 --------------NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            N + A   L++ + +    ++ ++  G  L    + ++A+   +  L I+P  +  +Y 
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME 654
            A  Y  + +Y  A K    A+ +++    
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  128 bits (325), Expect = 5e-33
 Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 15/234 (6%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            +    +D+     +     E     G +   L    EA        +  P   +     
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G+   + +    A+  L+    LD ++ + +  L ++ ++      A  +    +     
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 550 FLEAWGHLTQ---------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           + +      Q               F+       +    L   L ++   ++ +   G+L
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            +    +  A  +L   + + P + +      +        +EA+  Y+ ALD+
Sbjct: 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  111 bits (281), Expect = 3e-27
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 15/201 (7%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G  ++   D            +   E G+   K  +   A     A  +   E + A+  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LGL  +   +   A  A   A  LD   +     L   + +  N+  AL  L+  L    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 583 RFSKAYHL---------------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           ++ +   +                        ++++    L + L ++P++ +       
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 628 CYHAIGEYREAIKDYDAALDL 648
            Y+    Y  A  +   A++L
Sbjct: 181 LYNLSNNYDSAAANLRRAVEL 201

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  106 bits (268), Expect = 1e-25
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 20/218 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTARAFQR 429
            +  ++  NE    +A++     L   P Y +                +       A   
Sbjct: 93  AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           E     +    A++ NP+  +     G           A  +L +A+E  P+ A + ++ 
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G           A++  +  + ++         + ++ S++ +Y  A +  ++AI +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
                G  ++       +    +  + +L +  R    
Sbjct: 273 GTTPTGEASR-----EATRSMWDFFRMLLNVMNRPDLV 305

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++   + E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 31  MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 91  VHAALAVSHTNEHNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 21/55 (38%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  F ++    ++        AL+++P   Q +   G  ++     + A +   +
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 6/55 (10%), Positives = 13/55 (23%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +L          +   Q  P   +A+   G   +   +   A+     
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  153 bits (389), Expect = 3e-42
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 8/263 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE---EAHLKAIQLDRNFLEAWGHLTQF 560
           +DL A  + D  +     +L LA   + E +  E   +   K+ +    +     +L   
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
             +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 192 S-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 621 CLYLRASCYHAIGEYREAIKDYD 643
                      +G+ ++ + + D
Sbjct: 251 EHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  150 bits (380), Expect = 4e-41
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 4/224 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+   + G  A A + F Q L   P  PE     G         +AA   F   ++ +P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A   RG A    G    A  DL    + +PN         +   K  D   A E L
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-LDEKQAKEVL 167

Query: 507 SACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +   + +  +  +   L +I      ++ +        L  +  E   +L ++Y  
Sbjct: 168 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           L + + A    +  +  +      +    L L  LGQ +  + +
Sbjct: 228 LGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  140 bits (354), Expect = 2e-37
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 8/234 (3%)

Query: 422 GTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
                   + E  ++   + + S    +    +    RG    +LG    A  D S+AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
             P+  ++ +  GI   +  +F+AA E   + ++LD     A+   G+AL   G  K A+
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-- 595
           +  L   Q D N       L    Q L + ++A E L+Q      +    +++    L  
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 190

Query: 596 -HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                  ++   D +    +     E  +     Y ++G+   A   +  A+  
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  116 bits (292), Expect = 4e-29
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 4/193 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI     G + +A   FD +L+ DP Y  A + RG A  +    + A  D     Q +P
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAV 503
           +          A   L E  +A + L +  E         +          +        
Sbjct: 143 NDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
            D +    L +       YLG    S+G+   A      A+  + +      +       
Sbjct: 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261

Query: 564 LANSEKALECLQQ 576
           L   +  L    Q
Sbjct: 262 LGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  110 bits (277), Expect = 4e-27
 Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 7/211 (3%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           + + +       +   Q    L    + +         +   A +L+ERG++        
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A  D S  + +  +    + YLG+ L+  G +  A EA    ++LD  +  A  +    
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
                  + A + L      D           L    L + K+A + L            
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQW 179

Query: 621 CLYLRASCYHAI---GEYREAIKDYDAALDL 648
              +       I           D      L
Sbjct: 180 GWNIVEFYLGNISEQTLMERLKADATDNTSL 210

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%)

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
              + L++    D E        G+   S+G    A     +A+ +  +  E + +L  +
Sbjct: 27  RMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
                N + A E    VL +D  ++ A+  RG+ L+  G+ K A  DL +    DP++  
Sbjct: 87  LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
                      + E  +A +      +     
Sbjct: 147 RSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKE 177

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + +        +  ++  +  R   Y  L L      D  +AL + P + + +   G  
Sbjct: 29  EQILASRALTDDERAQL--LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 113 FSALGRKEEALSVWEK 128
            +  G  + A   ++ 
Sbjct: 87  LTQAGNFDAAYEAFDS 102

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
              LA      ++S+A+ I    + + +            +Q           D  L+LD
Sbjct: 58  LRALA----RNDFSQALAI-RPDMPEVF-----NYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           PT   A++ +G A    GR + A       Y+
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             + +    +    L+++            Y  L            A+  +      +  
Sbjct: 201 KADATDNTSL-AEHLSETN-----FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 254

Query: 109 KGCAFSALGRKEEALSVWEK 128
                S LG+ ++ L+  ++
Sbjct: 255 ALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 79  YSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            S+  L + +  D      L   L +     G  + +LG  + A ++++ 
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  153 bits (388), Expect = 3e-41
 Identities = 52/292 (17%), Positives = 99/292 (33%), Gaps = 28/292 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 68  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+LD  +        LG+  +  GEY KA +    A+ + 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307

Query: 608 LSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDL 648
               L +   +        +    I           G+           L  
Sbjct: 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  119 bits (300), Expect = 2e-29
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 26/279 (9%)

Query: 396 KYASAISI----FDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAG- 449
           ++  A S      D   K      E       A  +     +   + + +  Q       
Sbjct: 2   EFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPL 61

Query: 450 ---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    G  R   G+   A+     A++ +P   +     G    + +    A+  L
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ------- 559
             C++L  +N++A   L ++ ++    ++A E     ++    +        +       
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181

Query: 560 --------FYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                        +   +  E     + +             G+L +  G++ KA+   +
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           + L + P++        +      +  EA+  Y  AL+L
Sbjct: 242 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  105 bits (265), Expect = 7e-25
 Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 24/233 (10%)

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNS--- 482
           F+R   A  SD     +      E  KR  +A   L +  +       K  +FE  +   
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 483 -ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
                 E G+   +  D   AV    A V+ D ++  A+ YLG   +   +   A  A  
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
           + ++L  +   A   L   + + +   +A E L+  L     ++                
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT------------ 170

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
                   +  G   + +           +   + E  + + AA+ L+  S++
Sbjct: 171 -------PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 216

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAI 442
                + +++  +     +F   ++ DP    P+   G G       E + A+  FT A+
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
              P+    W + G   A   +S EA+    +ALE +P      +  GI          A
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304

Query: 503 VEDLSACVKLDKEN-----------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
           VE     + + +++           ++ ++ L LALS +G+      A  + +       
Sbjct: 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 552 E 552
            
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +     +   A+ + ++ + Q  +  +         ++ E     I    + L+L P   
Sbjct: 73  RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
            A +    +F+    + +A  +   
Sbjct: 133 TALMALAVSFTNESLQRQACEILRD 157

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  150 bits (382), Expect = 2e-40
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 19/295 (6%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG     I   +  + +DP   EA    G  +A     +AAI      ++ 
Sbjct: 69  FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+  +A      +        +A + L   ++  P    ++  +       +  + +  
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188

Query: 505 DLSACVKL------------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           D S    +            D  +    T LG+     GE+ +A +A   A+ +      
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            W  L     +   SE+A+E   + L I   F ++ +  G+    LG +++A+ +  + L
Sbjct: 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308

Query: 613 GIDPSNIECLYLR--ASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
            +   +     +   A   +     R A+   D       +  +   L  L    
Sbjct: 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP-----ELFQAANLGDLDVLL 358

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  150 bits (380), Expect = 4e-40
 Identities = 50/282 (17%), Positives = 96/282 (34%), Gaps = 12/282 (4%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +S      N+   +++   +    +            G  R  + +L   I     AI  
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P   EAW+  G  +A       AI  L + LE +PN+   L    +          A E
Sbjct: 95  DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154

Query: 505 DLSACVKLDKENKSAYTYLGL----------ALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            L   +K + + K                  +       +  +E +L+A   + + ++  
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214

Query: 555 GH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L   +       +A++     L +       ++  G  L    + ++A++  +  L
Sbjct: 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
            I P  I   Y        +G YREA+ ++  AL L+  S  
Sbjct: 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  136 bits (344), Expect = 3e-35
 Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 13/265 (4%)

Query: 397 YASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
             S    +D++  E + M     I        Q  + A+   +    ++           
Sbjct: 12  VESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEE 71

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  R   G+    I  +  A+  +P  A+     GI   + ++  AA+  L  C++L   
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           N  A   L ++ ++    + A EA    I+ +  +     +            K+     
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191

Query: 576 QVLYIDKRFSKAYHL------------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
            +  + + + +A H              G+L H  G+  +AI   ++ L + P +     
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN 251

Query: 624 LRASCYHAIGEYREAIKDYDAALDL 648
              +         EA++ Y  AL++
Sbjct: 252 RLGATLANGDRSEEAVEAYTRALEI 276

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  125 bits (315), Expect = 2e-31
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 20/241 (8%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPN-- 481
             E E A +      +        W    +R   +     ++   +    K   F     
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 482 --SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                   E G+   K  D    +  + A +  D  +  A+ +LG+  +     + A  A
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             + ++L  N L+A   L   Y + ++ + A E L+  +  + ++      +        
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYL------------RASCYHAIGEYREAIKDYDAALD 647
           +  K+  D S   G+    +E  +                 +H  GE+  AI  ++AAL 
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241

Query: 648 L 648
           +
Sbjct: 242 V 242

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           K     +    I  +++ + Q     +         ++ E  +  I    + L+L P  L
Sbjct: 74  KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           +A +    +++    +++A    + 
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +       I   + A+  DP   +A+   G   +    ++ A+   ++
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  125 bits (317), Expect = 1e-32
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 3/235 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
               V  G +    +   +  K      +A I  G     +   E A     +A++ +PS
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS 69

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           + +A            E   A ++  KAL  +  +A +L+  G   ++ K +  A + L 
Sbjct: 70  SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

Query: 508 ACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
              +  L  E    +  LGL    + +  +A+E   K+++L+RN       +        
Sbjct: 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
               A +          + +++  L   L         A         + P ++E
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  122 bits (308), Expect = 1e-31
 Identities = 42/229 (18%), Positives = 75/229 (32%), Gaps = 2/229 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R       +  +  +    A +A+ + G      G + +A   L KALE +P+SAD   
Sbjct: 16  PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-- 545
              +V     +   A E+    +  D  N       G  L     Y++A +  L+A Q  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
           L       + +L      +    +A E  ++ L +++           LL+   ++  A 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195

Query: 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
           +           N   L L         +   A         L   S+E
Sbjct: 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 96.6 bits (241), Expect = 1e-22
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 2/175 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-- 444
             +    E +   A   + + L  D      L   G     Q+  E A     EA Q   
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P     ++  G     + +  +A +   K+L    N   +  E   + +K +++  A +
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
                 +   +N  +            +   A    L+  +L    LE      +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 83.1 bits (206), Expect = 5e-18
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 1/133 (0%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
            + +    L   G +   ++  LK  +      +A+  L   Y    N+E+A   L++ L
Sbjct: 6   HHHHHSSGLVPRGSHM-GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            ID   + A+    ++     + K A ++    L  D  N   L       +    Y EA
Sbjct: 65  EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124

Query: 639 IKDYDAALDLELD 651
            +    A    L 
Sbjct: 125 YQRLLEASQDTLY 137

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  122 bits (308), Expect = 7e-32
 Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 24/233 (10%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +  +  G         +AA++ F  A++ NP   EA     + +  LG    A+++   
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
            +   P                                     + Y          G  +
Sbjct: 65  LVARTPRYLGGYMVLSEA-----------------------YVALYRQAEDRERGKGYLE 101

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +A      A +++  +          Y  L   +KA   L+Q L ++    +       L
Sbjct: 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAEL 160

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              +G+  +A+   +  L   P +++     AS     G+  EA +       
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  119 bits (302), Expect = 5e-31
 Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 46/241 (19%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+     G+Y +A+++F++ LKE+P  PEAL      +     +  A+ +    +   P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 447 SAGEAWKRRGQARAALGESV-----------EAIQDLSKALEFEPNSADILHERGIVNFK 495
                +    +A  AL               +A+  L  A    P  A            
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP----------- 119

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
                                   +   GL  + +GE  KAE +  +A+ L+ +  E   
Sbjct: 120 -----------------------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615
            L + Y  +   ++AL    + L    +           L   G+ ++A +  +      
Sbjct: 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

Query: 616 P 616
            
Sbjct: 216 H 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =   99 bits (250), Expect = 4e-24
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 49/218 (22%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           +Q+     +   R G    ALG    A+    +AL+  P   +                 
Sbjct: 1   MQTAE---QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----------------- 40

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
                            A  +L      +G    A E     +     +L  +  L++ Y
Sbjct: 41  -----------------ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 562 QDLANS-----------EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
             L              E+AL  L+    ++ R++  +  RGL+   LG+  KA   L  
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            L ++    E     A  Y ++G   EA+  Y  AL+ 
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 94.5 bits (236), Expect = 3e-22
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-----------RAFQRELEAAI 435
               Q+  G    A+     ++   P Y    +    A              +  LE A+
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
           S   +A + NP       +RG   A LGE  +A   L +AL  E    +I      +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLS 163

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               + A+   +  ++   ++         AL   G+ ++A  A         +
Sbjct: 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + D+   +          A  Y  +      +    KAL+  P  L   +    A 
Sbjct: 143 QALALEDT--PEIR-----SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195

Query: 114 SALGRKEEALSVWEKGYEHALH 135
              G+ EEA       + H  H
Sbjct: 196 LLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           Q+          L  +   +   ++AL+ +P   +A          LG    A     + 
Sbjct: 6   QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA----LEN 61

Query: 130 YEHAL 134
            +  +
Sbjct: 62  GKTLV 66

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A++  +    ++         A    +L L    + +    +   P  L  Y++   A+
Sbjct: 30  RALKE-NPQDPEAL-----YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146
            AL R+ E     +   E AL   + LK    +
Sbjct: 84  VALYRQAEDRERGKGYLEQAL---SVLKDAERV 113

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  128 bits (322), Expect = 1e-31
 Identities = 42/276 (15%), Positives = 94/276 (34%), Gaps = 20/276 (7%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSNPSAGEAW 452
           + +    +   +++L    +  +AL+ +G A          A    ++A++  P   EAW
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVN--FKFKDFNAAVE 504
            + G+     G+   A    S AL    N         +L +    +     +    +V 
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 505 DLSACVKLDKENKSAYTYLGLALSS--------IGEYKKAEEAHLKAIQLDR---NFLEA 553
                V++D  +  ++  LG A  S            ++A  A+ +A ++DR   +  + 
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
             +    ++   +  +ALE   Q   +D  + +       LL  L +    ++       
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
               ++      A          ++       L+L+
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELK 356

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  127 bits (320), Expect = 2e-31
 Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 22/251 (8%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNS 482
            +  Q E+E  +    E + S     +A   +G+A     + S EA   LSKA++ EP  
Sbjct: 77  QQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL- 541
            +  ++ G V +K  D  +A    S  +   K NK +   L + L  +      E +   
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 542 --------KAIQLDRNFLEAW-----GHLTQFY---QDLANSEKALECLQQVLYIDKR-- 583
                    A+Q+D     +W      +L+ ++   Q+   S++AL    Q   +D++  
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 584 -FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                +  R  L      + +A++  S    +DP+  E           +      ++  
Sbjct: 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315

Query: 643 DAALDLELDSM 653
                 +L SM
Sbjct: 316 GKTKPKKLQSM 326

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  105 bits (263), Expect = 3e-24
 Identities = 43/270 (15%), Positives = 93/270 (34%), Gaps = 25/270 (9%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           Q +    M  +            + L   +  F ++     S  +A +++   +    E 
Sbjct: 28  QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ---EEM 84

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLG 524
            + +Q + + L      A  L  +G       D++  A   LS  VKL+ E   A+  LG
Sbjct: 85  EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG 144

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---------NSEKALECLQ 575
                 G+   A      A+   +N   +  +L+   + L          +   ++   +
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 576 QVLYIDKRFSKAYHLRGLLL--------HGLGQHKKAIKDLSSGLGID---PSNIECLYL 624
             + +D    +++++ G                 ++A+   +    +D    SN +    
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME 654
           RA+ +     Y EA++ +  A  L+    E
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPE 293

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 93.2 bits (231), Expect = 3e-20
 Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 23/229 (10%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFK 497
              Q             +A+  L +    +  L    +  FE +S +    +       +
Sbjct: 25  TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD--VQE 82

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY-KKAEEAHLKAIQLDRNFLEAWGH 556
           +    ++ +   +   +    A    G AL+   +Y  +AE    KA++L+   +EAW  
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK---------KAIKD 607
           L + Y    +   A  C    L   K    +     ++L  L              +++ 
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 608 LSSGLGIDPSNIECLYLRASCY--------HAIGEYREAIKDYDAALDL 648
               + +D  +    Y+  + Y              ++A+  Y  A  +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 82.4 bits (203), Expect = 1e-16
 Identities = 27/210 (12%), Positives = 50/210 (23%), Gaps = 53/210 (25%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPE--------ALIGRGTARAFQRELEAAISDF 438
            G     +G   SA + F   L                  +   +     R +  ++   
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 439 TEAIQSNPSAGEAWKRRGQARAA-----------LGESVEAIQDLSKALEFEPNSADILH 487
             A+Q +   G +W   G A  +             +++ A     K      ++ D   
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD--- 259

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                                           +            Y +A E   +A  LD
Sbjct: 260 -------------------------------LHLNRATLHKYEESYGEALEGFSQAAALD 288

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQV 577
             + E      Q  + L+     LE   + 
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 2/117 (1%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
           ++ +  S + D  L+R      E  Y  A+  F Q    DP +PE          F   L
Sbjct: 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +    +       +     R            ++       LE +P     L  
Sbjct: 309 TSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKP--LSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            NRA  +   E +   +    +A  LDP   +    +      L R    L    K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 54  KAIRILDSLLAQSYEIQDIC-NRAFCYSQL-ELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           K ++ ++ +L  +         +    +   +          KA++L+P L++A+   G 
Sbjct: 86  KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145

Query: 112 AFSALGRKEEALSVWEK 128
            +   G    A + +  
Sbjct: 146 VYWKKGDVTSAHTCFSG 162

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  121 bits (304), Expect = 1e-31
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 18/207 (8%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA----------------LIGRGT 423
           SVD  L +  A +  G+   A+S F Q +  +    E                       
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A    R  + A   + E +Q  P+  +  +   + +   G+  +A++   K L+ E ++ 
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                 G   +   +     +E     +    + + A    GL+      Y+KA  +  K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEK 569
            I    +  EA   L +  +      +
Sbjct: 183 VILRFPST-EAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  117 bits (295), Expect = 3e-30
 Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 19/201 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           +   ++  A    G++ +A+    + +    +  ++ +   +                  
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD----------------- 47

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
            K  + +    T L LA      Y KA   + + +Q   N ++      +        + 
Sbjct: 48  -KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASC 628
           AL   +++L ++     A    G   +   +  KK ++     L          Y     
Sbjct: 107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166

Query: 629 YHAIGEYREAIKDYDAALDLE 649
                 Y +A       +   
Sbjct: 167 KLFTTRYEKARNSLQKVILRF 187

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  112 bits (283), Expect = 1e-28
 Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 19/206 (9%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             + ++ + +A     +   A+S F + I  N    E +                     
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN----------------- 45

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
              +    S+ +  E  +   K ++++ A       ++    N              G+ 
Sbjct: 46  -VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE-KALECLQQVLYIDKRFSKAYHLRG 592
           K A   + K +QL+ + L A   L  +Y   A  E K LE   + L    +   A +  G
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSN 618
           L      +++KA   L   +   PS 
Sbjct: 165 LSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 94.8 bits (236), Expect = 2e-22
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 2/166 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
           T + K+  IS        +A      Y  A   + ++L++ P   + L      +  + +
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLSKALEFEPNSADILHER 489
            + A+  + + +Q       A    G       E   + ++   K L          +  
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           G+       +  A   L   +      ++  T L   L    E  +
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKT-LDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 10/78 (12%), Positives = 25/78 (32%)

Query: 51  NWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110
           + ++     +         +     A  Y +   +        + LQ  P  +       
Sbjct: 36  DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95

Query: 111 CAFSALGRKEEALSVWEK 128
                 G++++AL ++EK
Sbjct: 96  EMQVCRGQEKDALRMYEK 113

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRA-FCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           LR + K +++ ++    +           + Y   E  K  +    K L     +  A  
Sbjct: 108 LRMYEKILQL-EADNLAAN-----IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161

Query: 108 LKGCAFSALGRKEEALSVWEKGYE 131
             G +     R E+A +  +K   
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
               RN+ KA      LL      +  +   A         K  +R  +K LQL+   L 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 105 AYILKGCAFSALGRKE-EALSVWEK 128
           A I  G  +     +E + L    K
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYK 148

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  119 bits (301), Expect = 3e-31
 Identities = 26/169 (15%), Positives = 60/169 (35%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +GI+    G+Y+ A+ + +Q+   D    +  +  G A      ++        ++   P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +     G     + +   A+  L K  E  P + ++    G+       F+ A++  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
              + L       +  +  +   +G +++A     KA +LD        
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  118 bits (298), Expect = 7e-31
 Identities = 30/183 (16%), Positives = 65/183 (35%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           + ++      ++ +G + A  G   +A+  L +  + +    D+    GI   K    + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
             E L   +    +N    T LGL    + +Y  A    +K  + +         L    
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
            +L   ++A++  +  L +     K +         +G+H++A+        +D      
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

Query: 622 LYL 624
           L L
Sbjct: 181 LAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  113 bits (285), Expect = 4e-29
 Identities = 31/180 (17%), Positives = 70/180 (38%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
           D +       +G + A       A+    +   ++    +     G A    G      +
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
            L ++L   P++  +    G+   + + ++ AV  L    + +  N +    LG+AL ++
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G + +A ++   A+ L  N  +    +   Y+ +   E+AL   ++   +D+  S    L
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 97.5 bits (244), Expect = 1e-23
 Identities = 27/139 (19%), Positives = 50/139 (35%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +  D   +  Y   G++ +  G Y +A     +    D   ++   HL   Y      ++
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
             E L++ L       K   + GL    + ++  A+  L      +P N    +      
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 630 HAIGEYREAIKDYDAALDL 648
             +G + EAI  +  AL L
Sbjct: 121 DNLGRFDEAIDSFKIALGL 139

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 5/55 (9%), Positives = 20/55 (36%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           ++   +++   +   +   ++    D   +   +  G A+   G  +    + E+
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +++        +             Y Q++ +   +    K  + +P         G A 
Sbjct: 67  RSLAD-APDNVKVA-----TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 114 SALGRKEEALSVWEK 128
             LGR +EA+  ++ 
Sbjct: 121 DNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 7/80 (8%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +    +     D+            +    Y +           +++L   P  ++   +
Sbjct: 28  VMLLEQVYDA-DAFDVDVA-----LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G  +  + + + A+ +  K
Sbjct: 82  LGLTYVQVQKYDLAVPLLIK 101

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           K     + +                   L      I     AL L P   + +     ++
Sbjct: 101 KVAEA-NPINFNVR-----FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154

Query: 114 SALGRKEEALSVWEK 128
             +GR EEAL  ++K
Sbjct: 155 EQMGRHEEALPHFKK 169

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  126 bits (317), Expect = 4e-31
 Identities = 48/323 (14%), Positives = 92/323 (28%), Gaps = 54/323 (16%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISD 437
           +D        +    +   A   F++ L++ P  PE   G   A          + AI  
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197

Query: 438 FTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVN 493
             +AI+ NP               +     E  E  + + +ALE  P   D+L       
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257

Query: 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-------------------YK 534
            +  + + A+E L   ++    N   +  +G    +                        
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIG 317

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA----YHL 590
            A     KA + + N       L   +      E+A    Q+    +             
Sbjct: 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGI------------------------DPSNIECLYLRA 626
               L+ +    KAI     G+ I                        + ++ E L++ A
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437

Query: 627 SCYHAIGEYREAIKDYDAALDLE 649
                  + ++A +D +  L+  
Sbjct: 438 FLQELNEKMQQADEDSERGLESG 460

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  124 bits (312), Expect = 2e-30
 Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 45/351 (12%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           F W++++  ++      K       +++             +  +G+  +A+    +  +
Sbjct: 20  FTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEE 79

Query: 410 ---------EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAW 452
                     +                   L        +               + E  
Sbjct: 80  LIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139

Query: 453 KRRGQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN---AAVEDLS 507
              G  R   G +    A     KALE +P + +      I +++  ++     A++ L 
Sbjct: 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

Query: 508 ACVKLDKENKSAYTYLGLALSSI----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             ++L+ +N+     L L L  +     E  + E+   +A++      +      +FY+ 
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-------------------A 604
               +KA+E L++ L      +  +   G                              A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655
           +  L      + +      + AS +    +Y EA   +      EL  + K
Sbjct: 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  103 bits (259), Expect = 1e-23
 Identities = 43/277 (15%), Positives = 80/277 (28%), Gaps = 51/277 (18%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTA----RAFQRELEAAISDFTEAIQSNPSA 448
           N     +AI    Q ++ +P      +         R    E         EA++  P  
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV---------------- 492
            +  +   +      E  +AI+ L KALE+ PN+A +  + G                  
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 493 ---NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                  +    AV  L    + +       + L    +   +Y++AE    K    +  
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 550 FLEAWG---HLTQFYQDLANSE-KALECLQQVLYIDK----------------------- 582
            +           F       E KA+    + + I++                       
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426

Query: 583 -RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
              S+A H+   L     + ++A +D   GL      
Sbjct: 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 83.8 bits (207), Expect = 4e-17
 Identities = 29/247 (11%), Positives = 61/247 (24%), Gaps = 47/247 (19%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
              +      + ++ L++ P   + L         + E + AI    +A++  P+     
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 453 -------------------KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
                                    R  L     A+  L KA E   N   +      ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344

Query: 494 FKFKDFNAAVEDLSACVKLDKENKSA----YTYLGLALSSIGEYKKAEEAHLKAIQL--- 546
                +  A          +    +       Y    L  +    KA    ++ +++   
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 547 ---------------------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
                                +    EA   L    +     ++A E  ++ L       
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464

Query: 586 KAYHLRG 592
            A    G
Sbjct: 465 SASSWNG 471

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  105 bits (263), Expect = 8e-26
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 37/228 (16%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             + +    +  +    Y  A +  +  LK DP    A + R     + +  + A   F 
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 440 EAIQSNPSAGEAWKRRGQA-RAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKF 496
           +A+   P + E     G      L    E++    KAL     P                
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI------------ 114

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
                                 A    G+  +  G++  AE    +++     F  A+  
Sbjct: 115 ----------------------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           L +          A    ++     +       L G  +     + +A
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 23/209 (11%), Positives = 49/209 (23%), Gaps = 37/209 (17%)

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           +          +         +  +A   +  AL+ +P +                    
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------------------ 43

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL-TQFY 561
                           A+         +    KA+E+  +A+ +  +  E   +      
Sbjct: 44  ----------------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87

Query: 562 QDLANSEKALECLQQVL--YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
             L    +++    + L          A   +G+     GQ   A   L   L   P   
Sbjct: 88  GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
                 A      G+  +A   +      
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSR 176

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 1/107 (0%)

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           +           L   Y    +  +A   ++  L  D +   A+ +R  +   L  + KA
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 605 IKDLSSGLGIDPSNIECLYLRASC-YHAIGEYREAIKDYDAALDLEL 650
            +     L I P + E            +    E++  +D AL    
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPT 108

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  111 bits (277), Expect = 2e-25
 Identities = 45/283 (15%), Positives = 96/283 (33%), Gaps = 3/283 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
               +  +G    A+ ++ + L+  P +  A     +    Q +L+ A+  + EAI+ +P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +  +A+   G     + +   A+Q  ++A++  P  AD       ++    +   A+   
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
              +KL  +   AY  L   L  + ++   +E   K + +  + LE      +   +  L
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIECLY 623
                         + +    K   L           K +   L  G    D  N    +
Sbjct: 195 YPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH 254

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV 666
           L  S        +  +  Y  + D   +   K + +   F  +
Sbjct: 255 LMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDL 297

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  108 bits (271), Expect = 9e-25
 Identities = 32/186 (17%), Positives = 75/186 (40%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
            P + ++L      +  Q  +E A+  + +A++  P    A           G+  EA+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
              +A+   P  AD     G    + +D   A++  +  ++++     A++ L       
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G   +A  ++  A++L  +F +A+ +L    Q + +     E +++++ I     +   L
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 591 RGLLLH 596
             +  H
Sbjct: 185 PSVHPH 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  104 bits (261), Expect = 2e-23
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 6/201 (2%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           S P+  ++       +   G   EA++   KALE  P  A        V  +      A+
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
                 +++      AY+ +G  L  + + + A + + +AIQ++  F +A  +L   ++D
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE--- 620
             N  +A+   +  L +   F  AY      L  +       + +   + I    +E   
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183

Query: 621 ---CLYLRASCYHAIGEYREA 638
                   +  Y     +R+A
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKA 204

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  104 bits (260), Expect = 2e-23
 Identities = 33/190 (17%), Positives = 81/190 (42%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           P  AD L+    +  +  +   AV      +++  E  +A++ L   L   G+ ++A   
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
           + +AI++   F +A+ ++    +++ + + AL+C  + + I+  F+ A+     +    G
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
              +AI    + L + P   +     A C   + ++ +  +     + +  D +EK  L 
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185

Query: 660 CLAFYQVLFD 669
            +  +  +  
Sbjct: 186 SVHPHHSMLY 195

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L ++ +AIR +    A +Y      N      +++  +  ++   +A+Q++P    A+  
Sbjct: 63  LMHYKEAIR-ISPTFADAY-----SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 109 KGCAFSALGRKEEALSVWEKGYE-------------HALHQSADLKQFLELEELLTAAKQ 155
                   G   EA++ +    +             H L    D   + E  + L +   
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176

Query: 156 D 156
           D
Sbjct: 177 D 177

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 8e-04
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 19  KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSAD-LKQFLELEELLTAAKQ 155
           AY   G     +   + AL  + +       +  A    A   K    + E + + + 
Sbjct: 79  AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 97.1 bits (243), Expect = 5e-24
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            +D R ++A++  G   +  G + +AI+     L +DP + E  Y   + Y+  G+Y EA
Sbjct: 63  ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122

Query: 639 IKDYDAALDL 648
           I+ Y  AL+L
Sbjct: 123 IEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 89.4 bits (223), Expect = 2e-21
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 34/169 (20%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+                         
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------------- 36

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 37  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           A+E  Q+ L +D R ++A++  G   +  G + +AI+     L +DP +
Sbjct: 88  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 87.4 bits (218), Expect = 1e-20
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+                      
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------------------- 104

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                       A+  LG A    G+Y +A E + KA++LD
Sbjct: 105 ------------AWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           ++A++  G   +  G + +AI+     L +DP + E  Y   + Y+  G+Y EAI+ Y  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 645 ALDL 648
           AL+L
Sbjct: 61  ALEL 64

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+  
Sbjct: 55  IEYYQKALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G A+   G  +EA+  ++K
Sbjct: 109 LGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.4 bits (96), Expect = 3e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 26  KALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 80  YKQGDYDEAIEYYQK 94

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 96.3 bits (240), Expect = 7e-23
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 35/196 (17%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVED 505
               A+ +RG       +   AI+DL +AL     N        G+   +FK F      
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL---QFKLFACE--- 122

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                            +    +   E+KKAEE    A  +                  +
Sbjct: 123 -------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHS 157

Query: 566 NSEKALECLQQVLYID 581
             +KA+EC+ +    +
Sbjct: 158 KIDKAMECVWKQKLYE 173

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 85.2 bits (211), Expect = 4e-19
 Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 35/222 (15%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G   A   +   A+   S     +   + I    G +    K+   A +  +  +  DK
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY   G+      +Y  A +   +A+   R      G+    Y+ L    K   C 
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQLIDYKILGLQFKLFAC- 121

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
                      +  +    +     + KKA + L+    +                   +
Sbjct: 122 -----------EVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSK 158

Query: 635 YREAIKDYDAALDLELDSMEKFVLQCLAFYQV--LFDMEYYG 674
             +A++        E   +    L      QV  L   +Y G
Sbjct: 159 IDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQLAKKDYLG 200

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 81.7 bits (202), Expect = 8e-18
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 19/146 (13%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           +    G+  +   ++K A +A                ++   Y  L N  +A +   + +
Sbjct: 8   SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSI 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS----------------SGLGIDPSNIECL 622
             DK  + AY  RG+L +   ++  AIKDL                  GL       E L
Sbjct: 65  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124

Query: 623 YLRASCYHAIGEYREAIKDYDAALDL 648
           Y  A  Y    E+++A +    A  +
Sbjct: 125 YNIAFMYAKKEEWKKAEEQLALATSM 150

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
               ++W  A+    ++      I    N    Y+ L+      +   +++  D  L  A
Sbjct: 16  AADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +    + + A+   ++
Sbjct: 74  YFQRGMLYYQTEKYDLAIKDLKE 96

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 99.4 bits (247), Expect = 1e-22
 Identities = 41/262 (15%), Positives = 92/262 (35%), Gaps = 18/262 (6%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W         T  Y D A  E+ ++   +++ +   
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR--ASCYHAIGE--YREAI 639
              A++    +L   G   K    L+  L + PS+     +      Y  + E       
Sbjct: 273 NESAWNYLKGILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331

Query: 640 KDYDAALDL------ELDSMEK 655
              + AL+L      E D++ K
Sbjct: 332 DILNKALELCEILAKEKDTIRK 353

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 98.2 bits (244), Expect = 3e-22
 Identities = 30/229 (13%), Positives = 77/229 (33%), Gaps = 8/229 (3%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH------KKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++     +      ++ ++     + 
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662
           + P N              G   +     +  LDL+      +++  L 
Sbjct: 269 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLV 316

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  I     F + + +     Q    SE+A +  +  + ++      +H R +LL  L +
Sbjct: 87  VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146

Query: 601 H-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              + +  +++ +   P N +  + R      + +  + ++     L+ 
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 19/178 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA------RAFQRELEAAISDFTE 440
           R         + + +   DQ+LKED         R            +  LE  +    E
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------ADILHE--R 489
            I+  P    AW          G S +    L++ L+ +P+           DI  +   
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLS-KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324

Query: 490 GIVNFKFKDFNAAVEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
              + K    N A+E       + D   K  + Y+G +L S    +     +++  + 
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQEEF 382

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q+    + +A+  + + ++ +P        R  A +       A+ D   AI  +P
Sbjct: 18  EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +  +A+ R G A ++L + VEA+    KALE +P++        I   K ++
Sbjct: 78  AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 34/158 (21%)

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
           E +   A+ L   G    K ++F AAV      ++L+  N   +     A S +G Y  A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596
            +   +AI +D  +                                  SKAY   GL L 
Sbjct: 66  VQDCERAICIDPAY----------------------------------SKAYGRMGLALS 91

Query: 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
            L +H +A+      L +DP N             + E
Sbjct: 92  SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
              + + +  E  K  G  +  +     A+    KA+E  P +A     R     K  ++
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             AV+D    + +D     AY  +GLALSS+ ++ +A   + KA++LD +          
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY------ 116

Query: 560 FYQDLANSEKALE 572
              +L  +E  L 
Sbjct: 117 -KSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 30/124 (24%), Positives = 53/124 (42%)

Query: 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468
           +ED    E L   G  +      EAA+  + +AI+ NP+    +  R  A + LG    A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528
           +QD  +A+  +P  +      G+          AV      ++LD +N++  + L +A  
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 529 SIGE 532
            + E
Sbjct: 126 KLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            KAI  L+   A  +     CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A
Sbjct: 36  GKAIE-LNPANAVYF-----CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89

Query: 113 FSALGRKEEALSVWEKGYEH 132
            S+L +  EA++ ++K  E 
Sbjct: 90  LSSLNKHVEAVAYYKKALEL 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 16/82 (19%), Positives = 36/82 (43%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+    + + ++   +  +  R      LG +  A++D    + IDP+  +       
Sbjct: 29  EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              ++ ++ EA+  Y  AL+L+
Sbjct: 89  ALSSLNKHVEAVAYYKKALELD 110

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK   NE  + + F        K+I ++     +  +R  A    G YA A+   ++ 
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           +  DP Y +A    G A +   +   A++ + +A++ +P           A   L E+
Sbjct: 73  ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 13/70 (18%), Positives = 30/70 (42%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639
            D   ++     G     +   + A+      + ++P+N      RA+ Y  +G Y  A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 640 KDYDAALDLE 649
           +D + A+ ++
Sbjct: 67  QDCERAICID 76

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 96.5 bits (240), Expect = 5e-21
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 2/177 (1%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +    +     A++  P    AW     A   +G++      + + L   P   + +   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G V +  +    A   L        E+     +LG AL   G+ + A  A+ +A QL   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--GQHKKA 604
                  L  + + L +         QV     +   A      L       +    
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 24/170 (14%), Positives = 44/170 (25%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
                 +      ++  P    A +    A     +  A        +  +P   EA  R
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G+ R       EA   L +A +  P    I    G          AA    +   +L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           E       L      + +++  +    +        + A        +D 
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA 172

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 89.9 bits (223), Expect = 5e-19
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 3/167 (1%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           D    +  L A V+   ++  A+  L  A   +G+    E A  + + L     EA   L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +         +A   LQQ               G  L   GQ + A    +    + P 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 618 NIECLYLRASCYHAIGEYR---EAIKDYDAALDLELDSMEKFVLQCL 661
                    +    + ++R          AA+   + ++E F     
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 3/144 (2%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +  +       A++       AW  L      + ++      +Q+ L +     +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
            G +     +H +A   L       P +              G+   A   Y  A   +L
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA--HQL 120

Query: 651 DSMEKFVLQCLAF-YQVLFDMEYY 673
              E ++   L    + L D    
Sbjct: 121 LPEEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 86.4 bits (214), Expect = 6e-18
 Identities = 16/142 (11%), Positives = 31/142 (21%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
            +    +  L  A+   P                 D  A    +   + L   +  A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    +   + +A     +A             L    +D   +E A     +   +  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
                          L   +  
Sbjct: 123 EEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 24/143 (16%), Positives = 43/143 (30%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
               L    A++  G   +      + L   P +PEA+   G  R  Q+    A     +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A  + P         G A    G++  A    ++A +  P    I  +      +  D+ 
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

Query: 501 AAVEDLSACVKLDKENKSAYTYL 523
           A     +       +   A    
Sbjct: 143 ALDVLSAQVRAAVAQGVGAVEPF 165

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 8/114 (7%)

Query: 39  ARIELAK-LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
           A + LA     + + +     +   LA      + +          + H        +A 
Sbjct: 25  AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFL 144
              P      +  G A    G+ E A + + +         +   Q  + ++ L
Sbjct: 85  DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 89.4 bits (221), Expect = 7e-20
 Identities = 36/257 (14%), Positives = 74/257 (28%), Gaps = 13/257 (5%)

Query: 395 GKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           G Y   I+   ++    P    E  +    A   QR+    +    E   S+    +A +
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD---EIKPSSAPELQAVR 69

Query: 454 RRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
              +  A+       + +L + +    +  +   L     + F  ++ +AA+  L     
Sbjct: 70  MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANSEK 569
           L+    +    L      +     A +   K    D +                    + 
Sbjct: 130 LECMAMTVQILL-----KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           A    Q++           + +       G+ + A   L   L  D  + E L       
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244

Query: 630 HAIGEYREAIKDYDAAL 646
             +G+  E    Y + L
Sbjct: 245 QHLGKPPEVTNRYLSQL 261

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 74.8 bits (183), Expect = 7e-15
 Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 9/248 (3%)

Query: 336 NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG 395
           N++     S  +   + D+    +  A+R     +  I  S +  +           +  
Sbjct: 20  NEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHS 79

Query: 396 KYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  + ++  D+ +    D      L+   +   + +  +AA+    +       A     
Sbjct: 80  RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA----- 134

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK--FKDFNAAVEDLSACVK 511
              Q    L     A ++L K  + + ++         V+     +    A         
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
                            + G ++ AE    +A+  D    E   +L    Q L    +  
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254

Query: 572 ECLQQVLY 579
                 L 
Sbjct: 255 NRYLSQLK 262

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 69.0 bits (168), Expect = 5e-13
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 13/223 (5%)

Query: 432 EAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           +  I++      S+P    E      +A  A  +    + ++  +   E  +  +  E  
Sbjct: 16  QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAE-- 73

Query: 491 IVNFKFKDFNAAVEDLSACV--KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                    +A V +L   +   +D  N +                 A    L+ +    
Sbjct: 74  -YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA----LRTLH-QG 127

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG--LLLHGLGQHKKAIK 606
           + LE      Q    L   + A + L+++   D+  +          L  G  + + A  
Sbjct: 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
                       +  L  +A+C+ A G +  A      ALD +
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 59.4 bits (143), Expect = 9e-10
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
            +       +         K   A  IF ++  +       L G+      Q   EAA  
Sbjct: 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD-LSKALEFEPNSADILHERGIVNFK 495
              EA+  +    E           LG+  E     LS+  +   +   I         K
Sbjct: 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277

Query: 496 FKDFNAAVEDLSA 508
             DF+  V   + 
Sbjct: 278 ENDFDRLVLQYAP 290

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R 429
             ++   S ++     +    + +G++ +A  +  + L +D  +PE LI          +
Sbjct: 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

Query: 430 ELEAAISDFTEAIQSNPS 447
             E      ++   ++ S
Sbjct: 250 PPEVTNRYLSQLKDAHRS 267

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 20/107 (18%), Positives = 41/107 (38%)

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
               L  + LE    L          + A +  Q +  +D   ++ +   G     LG +
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           ++A++  S G  +D +     +  A C+  +G+   A   + +A  L
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 80.2 bits (198), Expect = 5e-18
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+       ++ + L+  G   ++   ++ A +   A   LD  +   +  LG    S+G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
            Y++A +++     +D N      H  + +  L + + A         +         L 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 592 ---GLLLHGLGQHK 602
              G +L  +   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 4/133 (3%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++       LG      G++  A++       LD      +  L    Q L   E+
Sbjct: 11  RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           AL+       +D    +           LG    A     S   +  +      L A   
Sbjct: 71  ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA- 129

Query: 630 HAIGEYREAIKDY 642
              G   EA+   
Sbjct: 130 ---GAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 76.7 bits (189), Expect = 7e-17
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 3/134 (2%)

Query: 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
              +        E L   G  +    + + A   F      +      +   G  R +LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY 520
              +A+Q  S     + N           + +  D + A     +   L       ++  
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 521 TYLGLALSSIGEYK 534
              G  L ++   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 74.4 bits (183), Expect = 5e-16
 Identities = 17/98 (17%), Positives = 27/98 (27%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q   GK+  A  IF  +   D       +G G  R      E A+  ++     + 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           +         +    LG+   A      A         
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 74.0 bits (182), Expect = 7e-16
 Identities = 14/112 (12%), Positives = 27/112 (24%)

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
                  +    E     G  +   G+  +A +        +   A      G       
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  A++  S    +D        +       +G+   AE     A  L   
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 11/79 (13%), Positives = 31/79 (39%)

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
           L  +  + +   +  +  G   +  G+   A K   +   +D  +        +C  ++G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 634 EYREAIKDYDAALDLELDS 652
            Y +A++ Y     ++++ 
Sbjct: 67  LYEQALQSYSYGALMDINE 85

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 W  A +I  +L     Y+ +       C   L L++  ++       +D    +
Sbjct: 28  QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
                      LG  + A      G+  A   +A       L     A  +
Sbjct: 88  FPFHAAECHLQLGDLDGAE----SGFYSARALAAAQPAHEALAARAGAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              + L  G  + + G Y  A+  +      D   P              +L+ A S F 
Sbjct: 51  DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 440 EAIQ---SNPSAGEAWKRRGQARAALGESVE 467
            A     + P+      R G    A+    +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEAVTARKD 141

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 49/324 (15%), Positives = 96/324 (29%), Gaps = 69/324 (21%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G    N G   + ++ F   ++      E L          G A  +  +   A+     
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    S  +   R G+A++          +G   EA     + L          +    
Sbjct: 112 DLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY----------------------- 522
           L+  G V                   + +    A  +                       
Sbjct: 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G+++ A E H + +++ R F +      A  +L   +  L   E A E  ++
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 577 VLYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L +           ++ +  G     L +   AI+       ++  LG         + 
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348

Query: 625 RASCYHAIGEYREAIKDYDAALDL 648
             + + AIG +  A+K  +  L L
Sbjct: 349 LGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 80.4 bits (199), Expect = 3e-16
 Identities = 38/283 (13%), Positives = 79/283 (27%), Gaps = 51/283 (18%)

Query: 417 ALIGRGTARAFQRELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQ 470
           +      +           +      Q         S        G+     G+    + 
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 471 DLSKALEFE----PNSADILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY 522
               A++         + I  + G   F   D+N A++    DL+    ++     A + 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 523 --LGLALSSIGEYKKAEEAHLKAIQLDR-----------------------NFLEAWGHL 557
             LG  L  +G + +A     + + L R                         L      
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK----- 606
                      +A+E  Q+ L + +         +A    G   + LG  + AI+     
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 607 -DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             ++   G   +         + +  +G++ +A + Y   L L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 24/204 (11%)

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKA 543
            + +                 +    +             G  L + G+ +        A
Sbjct: 15  NVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA 74

Query: 544 IQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGL 593
           IQ     L      +  L   Y  L +  KA++  +  L + K        +K+    G 
Sbjct: 75  IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134

Query: 594 LLHGLGQHKKAIK------DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
            L  +G+  +A         L+  LG   S    LY   + YHA G++           D
Sbjct: 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194

Query: 648 LELDSME--KFVLQCLAFYQVLFD 669
           ++       +F  + L   + L D
Sbjct: 195 VKEALTRAVEFYQENLKLMRDLGD 218

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 79.4 bits (197), Expect = 4e-18
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ--S 444
            G+ Q + G Y  +I +F++ ++ DP   +  + +G A       E A+  +   I    
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +    + W  +  A   +       +      + E +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 75.6 bits (187), Expect = 9e-17
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           +  +N   Y   G+     G Y ++ +   KAIQLD    + W    +   +L   E+A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 572 ECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           +C   V+ +  D+     +  +   L  +   +   +   +   ++  +
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 75.6 bits (187), Expect = 9e-17
 Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 32/140 (22%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
               PE     G  +        +I  F +AIQ +P   + W  +G+A   L    EA+ 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
             +  +    +                                  NK  +     AL  I
Sbjct: 62  CYNYVINVIEDE--------------------------------YNKDVWAAKADALRYI 89

Query: 531 GEYKKAEEAHLKAIQLDRNF 550
              +   E      +L+ + 
Sbjct: 90  EGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             + +  +  G++ +   ++  +++     ++LD E    +   G AL ++  Y++A + 
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 540 HLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           +   I +  D    + W       + +   E   E  +    ++
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 61.3 bits (150), Expect = 9e-12
 Identities = 13/73 (17%), Positives = 34/73 (46%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639
           +  +  + Y+L G+L +  G + ++I      + +DP   +   ++    + +  Y EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 640 KDYDAALDLELDS 652
             Y+  +++  D 
Sbjct: 61  DCYNYVINVIEDE 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.8 bits (120), Expect = 9e-08
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                       +   I   +KA+QLDP   + +++KG A   L R EEA+  +  
Sbjct: 10  YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQA 105
           S+  + KAI++ D   ++ +       +      LE ++  +   +  + +  D      
Sbjct: 25  SIDLFEKAIQL-DPEESKYW-----LMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           +  K  A   +  KE       +  E   
Sbjct: 79  WAAKADALRYIEGKEVEA----EIAEARA 103

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 80.3 bits (198), Expect = 5e-18
 Identities = 19/142 (13%), Positives = 41/142 (28%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G        ++   E   ++ + L+      ++   +  A     A   LD  +   +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    ++G+Y  A  ++     +D        H  +         +A   L     +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
              +   L   +   L   K  
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 78.0 bits (192), Expect = 3e-17
 Identities = 20/145 (13%), Positives = 33/145 (22%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G   S       + +      E L      +      E A   F      +      +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G  R A+G+   AI   S     +               +  +   A   L    +L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEA 539
                        S +   K  +E 
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 74.2 bits (182), Expect = 8e-16
 Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 4/145 (2%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
              +    ++   ++  +       L       G Y+ A         LD      +  L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
               Q +   + A+        +D    +        L   G+  +A   L     +  +
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 618 NIECLYLRASCYHAIGEYREAIKDY 642
             E   L       +    EAIK  
Sbjct: 122 XPEFXELST----RVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 72.6 bits (178), Expect = 3e-15
 Identities = 25/118 (21%), Positives = 37/118 (31%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G             ++  + LE    L          E A    Q +  +D   S+ +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            G     +GQ+  AI   S G  +D       +  A C    GE  EA      A +L
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 68.0 bits (166), Expect = 9e-14
 Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            L +         + +    E        +   G   +A          +   +      
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G        ++ A+   S    +D        +    L   GE  +AE     A +L  N
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQ 576
                    +F +        LE ++ 
Sbjct: 122 -------XPEFXELSTRVSSMLEAIKL 141

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 20/105 (19%), Positives = 30/105 (28%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    Q   G Y  A  +F  +   D       +G G  R    + + AI  ++     +
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
                      +     GE  EA   L  A E   N  +      
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 57.2 bits (138), Expect = 6e-10
 Identities = 12/98 (12%), Positives = 28/98 (28%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
                 +  +  I     +  +      +  G ++ A     +   +D  +        +
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           C  A+G+Y  AI  Y     +++              Q
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 1/118 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 +  A  +  +L     Y+ +       C   +  +   I        +D    +
Sbjct: 31  QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCE 162
                       G   EA S      E   +     +    +  +L A K  + +  E
Sbjct: 91  FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 16/85 (18%), Positives = 24/85 (28%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              F L  G  +   G+Y  AI  +      D   P              EL  A S   
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 440 EAIQSNPSAGEAWKRRGQARAALGE 464
            A +   +  E  +   +  + L  
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           G        ++    I    +E LY  A   +  G Y +A   + A   L+
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD 51

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 84.2 bits (209), Expect = 8e-18
 Identities = 50/324 (15%), Positives = 101/324 (31%), Gaps = 66/324 (20%)

Query: 388 GIAQVNEGKYASAISIFDQ---ILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           G      G   + +S F+    +  ED           G A  +  +   A+      + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 444 SNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHE 488
              + G+   + G+A+A          LG   EAI    + L+       +   A  L+ 
Sbjct: 72  LARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENK--------------------------SAYTY 522
            G V                    +                               A+  
Sbjct: 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGN 188

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E  ++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 577 VLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L + ++       +++ +  G     L  ++KAI        ++  L          + 
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308

Query: 625 RASCYHAIGEYREAIKDYDAALDL 648
             + Y A+G + +A+   +  L++
Sbjct: 309 LGNAYTALGNHDQAMHFAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 42/209 (20%), Positives = 75/209 (35%), Gaps = 42/209 (20%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAE 537
           S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y KA 
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 538 EAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------S 585
           E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +        +
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC-----LYLRA-------------- 626
           +A +  G + H  G+         +G   +           LY                 
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183

Query: 627 -------SCYHAIGEYREAIKDYDAALDL 648
                  + ++ +G +R+A+  ++  L +
Sbjct: 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 50/247 (20%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 90  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149

Query: 422 GTARAFQRELEAAISDFTEA------IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
                 +  L+AA+  + E       +    + G A+   G     LG   +A+    + 
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 476 LEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
           L        +          G       +F  A E     + L ++ K       +   L
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577
           G   + + +Y+KA + HLK + + +          A   L   Y  L N ++A+   ++ 
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 578 LYIDKRF 584
           L I +  
Sbjct: 330 LEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 386 SRGIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +    +       +A+ ++++ L       +      A    G           A+    
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207

Query: 440 EAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSAD 484
           + +      G+   +  + RA          LGE   A +   K L            A 
Sbjct: 208 QRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEE 538
             +  G      +D+  A++     + + +E K       A   LG A +++G + +A  
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324

Query: 539 AHLKAIQLDR 548
              K +++ R
Sbjct: 325 FAEKHLEISR 334

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 40/284 (14%), Positives = 90/284 (31%), Gaps = 39/284 (13%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
               RG+ + ++ +Y  AI  + +  K                         +SD  E  
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEK---------------------ELPFVSDDIEKA 141

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + +    EA+    Q   ++   ++A+        +   +   L         FK ++ A
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 503 VEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFL 551
           +  L A ++L  + +       +   +  +    G+ + A E   KA ++          
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSS 610
           +    L+        ++KA + +++ L      S K Y    L L  + +     + +  
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321

Query: 611 GL------GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            L       +      C    A+ + +   + +A   Y   L  
Sbjct: 322 LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 37/237 (15%), Positives = 77/237 (32%), Gaps = 25/237 (10%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE------DLSACV 510
             R  + E +E I+   K L         L  RG+  F  K++  A+            V
Sbjct: 76  GNRPTVTELLETIETPQKKLT-GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQD 563
             D E    +  +  A   + +   +    L+A+ + +N         ++   +   Y D
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--- 614
             + +KAL  L+  L +          + +           G  + A++       +   
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

Query: 615 --DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD 669
                  + L+  +      G+ ++A +  +  LD       KF  +   F Q ++ 
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 24/215 (11%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
              A+ I+           ++L          +  + A+     A++           R 
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRF 220

Query: 457 QARA---------ALGESVEAIQDLSKALE-----FEPNSADILHERGIVNFKFKDFNAA 502
            A +           G+   A++   KA +            +L        K      A
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280

Query: 503 VE----DLSACVKL-DKENKSAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWG 555
            +     L        K  K  + +L        + +K  +   + +   L         
Sbjct: 281 FQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACAR 340

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
                ++   + E+A    ++VL   +   K   L
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
                +   Y  A+   +  L+       D     +L+    +     + + A+  F +A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 442 IQSNPSAGEAWKRR-----GQARAALGESVEAIQDLSKALE--------FEPNSADILHE 488
            + +         +            G++ +A Q + + L+        F       L  
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                   +  +  +        L    ++          S   +++A   + K ++   
Sbjct: 309 VYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367

Query: 549 NFLE 552
           + L+
Sbjct: 368 DILK 371

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 17/101 (16%), Positives = 34/101 (33%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +++P   EA    G  +A   +   AI     A   
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           +P           +      +  A+  L   L  +P    +
Sbjct: 81  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 477 EFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
            FE N      +   E G+   K  +   A     A  + + E + A+  LGL  +   +
Sbjct: 7   PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK 66

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
              A  A   A  LD   +     L   + +  N+  AL  L+  L    ++ 
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 443 QSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
            +NP    E     G +   L    EA        + EP   +     G+   + +    
Sbjct: 10  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL 69

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A+  L+    LD ++ + +  L ++ ++      A  +    +     +
Sbjct: 70  AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 19/97 (19%), Positives = 30/97 (30%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           E           LAN  +A    + V   +    +A+   GL      +   AI  L+  
Sbjct: 18  ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             +DP +I      A  +        A+    A L  
Sbjct: 78  RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 24/101 (23%), Positives = 37/101 (36%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           MY E  +  G +      L  A   F    Q  P   EAW+  G  +A   +   AI  L
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + A   +P    +     + +    + NAA+  L A +   
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 1/103 (0%)

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             +++     GL++  +    +A  A     Q +    EAW  L     +      A+  
Sbjct: 15  MYHENPME-EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
           L     +D +    +    +          A+  L + L   P
Sbjct: 74  LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 10/64 (15%), Positives = 18/64 (28%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
            GL +  L    +A     +    +P   E             +   AI   + A  L+ 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 651 DSME 654
             + 
Sbjct: 83  KDIA 86

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++  +  E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 27  MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 87  VHAALAVSHTNEHNANAALASLRA 110

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 83.5 bits (207), Expect = 3e-17
 Identities = 56/327 (17%), Positives = 107/327 (32%), Gaps = 72/327 (22%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G      G   + +S F+  ++   +  E L          G A  +  +   A+     
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    + G+   + G+A+A          LG   EAI    + L+       +   A  
Sbjct: 73  DLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 486 LHERGIV--------------------NFKFKDFNAAVEDLSACVKLDKENK------SA 519
           L+  G V                            AAV+     + L            A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALEC 573
           +  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 574 LQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI-EC 621
            ++ L + ++        ++ +  G     L  ++KAI      L I     D       
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDL 648
            +   + Y A+G + +A+   +  L++
Sbjct: 310 CWSLGNAYTALGNHDQAMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 80.4 bits (199), Expect = 3e-16
 Identities = 53/325 (16%), Positives = 96/325 (29%), Gaps = 63/325 (19%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G A      YA A+      L       +     +A    G         + AI      
Sbjct: 54  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113

Query: 442 IQSNPSA-------------GEAWKRRGQARAALG------ESVEAIQDLSKALEF---- 478
           +  +                G  +  +G++    G         E    L  A++F    
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173

Query: 479 ---------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
                               G  ++   +F  AV      + + KE         AY+ L
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQV 577
           G A   +GE++ A E + K + L R   +      +   L   Y  L + EKA++   + 
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 578 LYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYLR 625
           L I +  +      +A    G     LG H +A+       ++S  +G     +      
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353

Query: 626 ASCYHAIGE-YREAIKDYDAALDLE 649
           +     +G  Y           +++
Sbjct: 354 SDLQMVLGLSYSTNNSIMSENTEID 378

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 54/287 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRRGQARAALGESVEAIQD 471
             L   G       +  A +S F  A+Q       +    + + G A   L +  +A++ 
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69

Query: 472 LSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SA 519
               L        +   A      G       +F+ A+      + + +E         A
Sbjct: 70  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 520 YTYLGLALSSIGE--------------------YKKAEEAHLKAIQLDRNFLE------A 553
              LG    + G+                     + A + + + + L     +      A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK- 606
           +G+L   +  L N   A+   +Q L I K F       +AY   G     LG+ + A + 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 607 -----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                 L+  L       +  Y   + Y  + +Y +AI  +   L +
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 44/212 (20%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKK 535
             S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y K
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 536 AEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----- 584
           A E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +       
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125

Query: 585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRA----------- 626
            ++A +  G + H  G+          G   +         ++  Y              
Sbjct: 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF-YEENLSLVTALGDRA 184

Query: 627 ----------SCYHAIGEYREAIKDYDAALDL 648
                     + ++ +G +R+A+  ++  L +
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 46/293 (15%), Positives = 83/293 (28%), Gaps = 69/293 (23%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 94  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
                 +  L+AA+  + E +    + G+   R  Q RA          LG   +A+   
Sbjct: 154 EFPEEVRDALQAAVDFYEENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAH 210

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            + L        +          G       +F  A E     + L ++ K       + 
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECL 574
             LG   + + +Y+KA + HLK + + +   +      A   L   Y  L N ++A+   
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330

Query: 575 QQVLYIDKRF-------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
           ++ L I +               S    + GL             ++ S L  
Sbjct: 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 76.7 bits (190), Expect = 4e-17
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 34/151 (22%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+   
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KALE +PN+A+                                  A+  LG A    G+Y
Sbjct: 68  KALELDPNNAE----------------------------------AWYNLGNAYYKQGDY 93

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            +A E + KA++LD N  EA  +L    Q  
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 75.9 bits (188), Expect = 9e-17
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 34/150 (22%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
           A+E  Q+ L +D   ++A    G      G
Sbjct: 96  AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++A+E  Q+ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
            +D   ++A++  G   +  G + +AI+     L +DP+N E      +     G
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 73.2 bits (181), Expect = 8e-16
 Identities = 35/106 (33%), Positives = 52/106 (49%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
           +  EAW   G A    G+  EAI+   KALE +PN+A+     G  
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 66.6 bits (164), Expect = 1e-13
 Identities = 32/100 (32%), Positives = 54/100 (54%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L +DP+N E  Y   + Y+  G+Y EAI+ Y  AL+L
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.6 bits (130), Expect = 7e-09
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 34  KALEL-DPNNAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 88  YKQGDYDEAIEYYQK 102

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 27/139 (19%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
            ++A    + G   +K KDF  A       ++LD  N + Y           ++ +  + 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA+++ R     +                           K  +KA    G       
Sbjct: 65  CEKAVEVGRETRADY---------------------------KLIAKAMSRAGNAFQKQN 97

Query: 600 QHKKAIKDLSSGLGIDPSN 618
               A++     L      
Sbjct: 98  DLSLAVQWFHRSLSEFRDP 116

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +   A  A K  G A     +  +A     KA+E +P++    + +  V F+ K F   V
Sbjct: 3   AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 504 EDLSACVKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           +     V++ +E ++       A +  G A     +   A +   +++   R+
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +  +  A   +D+ ++ DP        +      +++    +    +A++   
Sbjct: 14  LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73

Query: 447 SA-------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
                     +A  R G A     +   A+Q   ++L    +
Sbjct: 74  ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 8/91 (8%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------E 620
           EKA     + + +D      Y+ +  +     +  + ++     + +            +
Sbjct: 25  EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELD 651
            +    + +    +   A++ +  +L    D
Sbjct: 85  AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSV 125
            N+A  Y + +     ++ C+KA+++             A    G AF        A+  
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 126 WEKGYEHALHQSADLKQFL 144
           + +       +  +L + +
Sbjct: 106 FHRSLS--EFRDPELVKKV 122

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/78 (19%), Positives = 32/78 (41%)

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
           A    G   +     +KA       + +DPSNI     +A+ Y    ++ E ++  + A+
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69

Query: 647 DLELDSMEKFVLQCLAFY 664
           ++  ++   + L   A  
Sbjct: 70  EVGRETRADYKLIAKAMS 87

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
              K+  N A + K F    +   K+I +D     F  ++      E K+A  +   ++ 
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 408 LKEDP-------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           ++          +  +A+   G A   Q +L  A+  F  ++      
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 531 GEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           G   +A   + KAI      ++  E +  L   ++ L    KA   L   +         
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
                ++L+ LG++++ ++ L   +     +             I  Y++AI  Y   LD
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDD-----------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 395 GKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           G  A A+  +++ +    +     E  +G G+      E   A +     ++  P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADIL-HERGI 491
                     LG   + ++ L K +    +   I  +++ I
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 430 ELEAAISDFTEAIQ---SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
               A+  + +AI          E +   G     LGE  +A   L+  ++  PN   + 
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
               +V +    +   VE L   +    +++           +I  YK+A   +     L
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYADK--L 111

Query: 547 DRNF 550
           D  +
Sbjct: 112 DETW 115

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
            K+    Y  LG    ++GEY+KAE      ++   N             +L   E+ +E
Sbjct: 23  GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82

Query: 573 CLQQVL 578
            L +++
Sbjct: 83  LLLKII 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G      G+Y  A ++    +K+ P +    +            E  +    + I  
Sbjct: 31  LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                                 E IQ   +A+ F  +  D
Sbjct: 91  TSDD------------------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 598 LGQHKKAIKD----LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653
           LG   +A+      ++SGL       EC     S +  +GEYR+A       +    +  
Sbjct: 3   LGLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61

Query: 654 E 654
            
Sbjct: 62  A 62

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 54  KAIRI--LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           KAI        LA+ Y           +  L  ++         ++  P      +    
Sbjct: 15  KAIASGLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69

Query: 112 AFSALGRKEEALSVWEK 128
               LGR E+ + +  K
Sbjct: 70  VLYNLGRYEQGVELLLK 86

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 21/102 (20%), Positives = 43/102 (42%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G Y  A+  + + +K +P   +    R        E + A+ D  E IQ  P
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
           +  + + R+  A  A+ +  +A+    KAL+ + +  +    
Sbjct: 82  TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
                    NP      K +G      G+  +A++  ++A++  P  A +   R     K
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
             +F  A++D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 63  LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 34/159 (21%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
                  P+ A ++  +G   F+  D+  A++  +  +K + ++   Y+      + + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           ++ A +   + IQL+                                    F K Y  + 
Sbjct: 66  FQLALKDCEECIQLEPT----------------------------------FIKGYTRKA 91

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
             L  +  + KA+      L +D S  E       C  A
Sbjct: 92  AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 67.6 bits (166), Expect = 8e-14
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++AI+  +   A+ Y      NRA CY++L   +  ++DC++ +QL+PT ++ Y  K  A
Sbjct: 40  TEAIK-RNPKDAKLY-----SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93

Query: 113 FSALGRKEEALSVWEKGYEH 132
             A+    +A+ V++K  + 
Sbjct: 94  LEAMKDYTKAMDVYQKALDL 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 23/119 (19%), Positives = 43/119 (36%)

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                 +P     +  +G     + +   A+  +TEAI+ NP   + +  R      L E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
              A++D  + ++ EP        +       KD+  A++     + LD   K A    
Sbjct: 66  FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 19/82 (23%), Positives = 42/82 (51%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A++   + +  + + +K Y  R      L + + A+KD    + ++P+ I+    +A+
Sbjct: 33  PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              A+ +Y +A+  Y  ALDL+
Sbjct: 93  ALEAMKDYTKAMDVYQKALDLD 114

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 14/74 (18%), Positives = 34/74 (45%)

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
               +++   +     +G      G + +A+K  +  +  +P + +    RA+CY  + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 635 YREAIKDYDAALDL 648
           ++ A+KD +  + L
Sbjct: 66  FQLALKDCEECIQL 79

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 15/114 (13%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
            M+K   NE  +   +       +++I  +        +R        ++  A+   ++ 
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461
           ++ +P + +    +  A    ++   A+  + +A+  + S  EA     +   A
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 75.2 bits (185), Expect = 5e-16
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G A +   +Y+ AI ++ Q L   P  P  L  R  A +   + E A  D   A   +
Sbjct: 16  SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI--VNFKFKDFNAAV 503
           P   +AW R G AR  + +   A +   K +E E N      +RG+     K ++ N   
Sbjct: 76  PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135

Query: 504 E 504
           E
Sbjct: 136 E 136

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +     +  K  G A  A  E  +AI   ++AL   P +   L  R            A 
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           ED      +D +   A++ LGLA   + +YK A+EA+ K I+ + N            + 
Sbjct: 66  EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD-----AMKRG 120

Query: 564 LANSEKALE 572
           L  +++ +E
Sbjct: 121 LETTKRKIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 39/177 (22%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
               +D L   G      K+++ A++  +  + +   N    +    A S+ G+++KA E
Sbjct: 7   PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE 66

Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
               A  +D  +                                  SKA+   GL    +
Sbjct: 67  DAELATVVDPKY----------------------------------SKAWSRLGLARFDM 92

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655
             +K A +    G+  + +       R      +   +  I++ +   +   D ++ 
Sbjct: 93  ADYKGAKEAYEKGIEAEGNGGSDAMKR-----GLETTKRKIEEANRGAEPPADDVDD 144

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++A+  +              NRA  YS    H+    D + A  +DP   +A+   G A
Sbjct: 35  TQALS-IAPANPIYL-----SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88

Query: 113 FSALGRKEEALSVWEKGYEHA-LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSS 171
              +   + A   +EKG E      S  +K+ LE  +         +     DV ++  +
Sbjct: 89  RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGA 148

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           ++E   AI  +T+A+   P+       R  A +A G+  +A +D   A   +P  +    
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL--ALSSIGEYKKAEEA 539
             G+  F   D+  A E     ++ +    S     GL      I E  +  E 
Sbjct: 84  RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEP 137

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 19/95 (20%), Positives = 35/95 (36%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            KA++   Q L I          R       GQH+KA +D      +DP   +       
Sbjct: 28  SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662
               + +Y+ A + Y+  ++ E +     + + L 
Sbjct: 88  ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
                 S      G       ++ KAI   +  L I P+N   L  RA+ Y A G++ +A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 639 IKDYDAALDL 648
            +D + A  +
Sbjct: 65  AEDAELATVV 74

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 19/122 (15%), Positives = 37/122 (30%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516
               A+ +++ +   L        +  D ++      +       A          D  N
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
                 L        ++++A + +  A  L +N      H  Q    L    KA EC + 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 577 VL 578
           V+
Sbjct: 130 VI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 72.1 bits (177), Expect = 4e-15
 Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           EN+S  T +  A++S    K           +  + ++        + +    E+A    
Sbjct: 7   ENESISTAVIDAINSGATLKDI-------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFF 59

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           + +   D            +     Q ++A    +    +  ++   ++    C   +  
Sbjct: 60  RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119

Query: 635 YREAIKDYDAALDLELDS 652
             +A + ++  +    D 
Sbjct: 120 PLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 13/98 (13%), Positives = 31/98 (31%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S      N+G+   A   F  +   D    + ++G       + + + A   +  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            +        GQ +  L   ++A +     ++   +  
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 2/135 (1%)

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              D   +   L     +  +             + G  ++AE         D   ++  
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
             L   YQ     ++A +       + K         G     L    KA +     +  
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 615 DPSNIECLYLRASCY 629
                E L ++A  Y
Sbjct: 134 SND--EKLKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 12/112 (10%), Positives = 26/112 (23%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
            I        + +         +  +E A   F      +    +             + 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
            +A    + A     N    +   G    + K    A E     ++   + K
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 14/110 (12%), Positives = 30/110 (27%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +         +            G   EA         ++  + D +     +    + F
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             A +  +    L K + +   + G     +    KA+E     IQ   +
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 1/105 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +     +A      L     Y +  I   A  Y   E  +        A  L      
Sbjct: 46  FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149
                G     L    +A   +E   +H+  +   +K    L+ +
Sbjct: 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +VD+ +        + ++  A  ++             +   G  +   +    A   F 
Sbjct: 69  NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128

Query: 440 EAIQSNPSAGEAWKRRGQA 458
             IQ +    E  K + Q+
Sbjct: 129 LVIQHSN--DEKLKIKAQS 145

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA   ++L      I DC+KA++ DP  ++AYI K  A  A+     AL   +     
Sbjct: 42  SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101

Query: 133 ALHQSADLKQFLELEELLTAAKQDR 157
              +  +     E+++L   A Q R
Sbjct: 102 DA-EVNNGSSAREIDQLYYKASQQR 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 24/111 (21%), Positives = 46/111 (41%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  + +++K  P        R  A A       AI+D  +AI+ +P
Sbjct: 10  EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
           +   A+ R+  A+ A+ E   A++ L  A   +    +    R I    +K
Sbjct: 70  NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 20/104 (19%), Positives = 35/104 (33%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  +  G+      +   A++  ++ ++  P  A     R     K   F  A+ D +  
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++ D     AY     A  ++ EY  A E    A   D      
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 25/112 (22%), Positives = 42/112 (37%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
            A+     G   F   D+  AV+  +  +K   E+   Y+    AL+ +  + +A     
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593
           KAI+ D NF+ A+         +     ALE L      D   +     R +
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +TE I+  P     +  R  A A L    EAI D +KA+E +PN       +  
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                K++ +A+E L A    D E  +  +   +       Y KA + 
Sbjct: 81  AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ----LYYKASQQ 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 58.8 bits (143), Expect = 9e-11
 Identities = 18/82 (21%), Positives = 36/82 (43%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A++   +++      ++ Y  R   L  L    +AI D +  +  DP+ +     +A+
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              A+ EY  A++  DAA   +
Sbjct: 81  AQIAVKEYASALETLDAARTKD 102

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 28  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R  + E    +  S L
Sbjct: 82  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKRWNSIEERRIHQESEL 139

Query: 173 TVSESGLNANDKMSETSENHNKSD 196
               + L A ++  E  E     +
Sbjct: 140 HSYLTRLIAAERERELEECQRNHE 163

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 68.8 bits (168), Expect = 7e-13
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 2/189 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G       KY  A + + + +  +P+       R       ++ E A++D   A++ +
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
             + +A    GQ +  +    EAI +L +A            +      +          
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128

Query: 506 LSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +  + E  S  T L  A     + E ++  E H     +            ++  D
Sbjct: 129 EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188

Query: 564 LANSEKALE 572
           +      ++
Sbjct: 189 MDELFSQVD 197

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 18/89 (20%), Positives = 35/89 (39%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 21  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKF 656
           C   +  Y EAI +   A  L  +    F
Sbjct: 81  CQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 21/101 (20%), Positives = 43/101 (42%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA  L E+G   F  + +  A       +  +      YT   L    + + ++A     
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           +A++LD   ++A   L Q   ++ + ++A+  LQ+   + K
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            ++ +A       +  +P        RA CY  + +  +A+ D   AL+L
Sbjct: 18  RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 33  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKR 129

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 18/102 (17%), Positives = 39/102 (38%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +A    GQ +  +    EAI +L +A            +
Sbjct: 75  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 20/109 (18%), Positives = 39/109 (35%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
                  + +  K +G       +  EA     +A+   P  A     R +   K +   
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            A+ D    ++LD ++  A+ +LG     +  Y +A     +A  L + 
Sbjct: 61  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 61.9 bits (151), Expect = 9e-12
 Identities = 21/111 (18%), Positives = 42/111 (37%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R+   A + +  AI  NP     +  R      + +  +A+ D  +ALE +  S     
Sbjct: 22  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             G    + + ++ A+ +L     L KE +  +     +   I + K+   
Sbjct: 82  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 34/144 (23%)

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
               +  SA  L E+G   F  + +  A       +  +      YT   L    + + +
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +A     +A++LD                                      KA+   G  
Sbjct: 61  QALADCRRALELDGQ----------------------------------SVKAHFFLGQC 86

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSN 618
              +  + +AI +L     +    
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQ 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 33/82 (40%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 26  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
           C   +  Y EAI +   A  L 
Sbjct: 86  CQLEMESYDEAIANLQRAYSLA 107

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 73.4 bits (180), Expect = 3e-15
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 3/137 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           +         A Q+  EA +    + I++NP   E W   G+      +   ++    +A
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 476 LEFEPNSADILHERGIVNF---KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           L+    +A++      V +              +   + LD    +A   L         
Sbjct: 71  LQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130

Query: 533 YKKAEEAHLKAIQLDRN 549
           Y +A E   K + L+  
Sbjct: 131 YAQAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 69.9 bits (171), Expect = 4e-14
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 7/153 (4%)

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
            ++  A ++ L   ++ + +N   +  LG       +Y  +  A+ +A+QL     E + 
Sbjct: 23  QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82

Query: 556 HLTQFY---QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            L            + +    + + L +D     A  L          + +AI+     +
Sbjct: 83  ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
            ++   I     R     +I   +   +  D  
Sbjct: 143 DLNSPRIN----RTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
              ++    + +      ++ +P   E     G    +Q +   ++  + +A+Q      
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 450 EAWKRRGQARAALGE---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           E +               + +    + KAL  + N    L       F   ++  A+E  
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 507 SACVKLDKENKSAYTYL 523
              + L+    +    +
Sbjct: 139 QKVMDLNSPRINRTQLV 155

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
             +S    +   +A    I+ +    E W  L ++Y    +   +L   +Q L +    +
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 586 KAYHLRGLLLHGLGQHK---KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           + Y     +L+         +    +   L +D + I  L L AS       Y +AI+ +
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 643 DAALDL 648
              +DL
Sbjct: 139 QKVMDL 144

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQS 444
           G   + +  Y++++  + Q L+      E      T   +   Q       +   +A+  
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           + +   A               +AI+   K ++      +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           Q  R   +        +    N E  L+ LQ  +  + + S+ + L G        +  +
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYR---EAIKDYDAALDLE 649
           +      L +   N E     A+  +         +     D AL L+
Sbjct: 64  LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD 111

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
             Q ++   A   ++ D+ L  D     AL+   +    Q     AI  + + +  N   
Sbjct: 89  YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP- 147

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                     R  L ES+   + L +  + E
Sbjct: 148 -------RINRTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
              +  ++ L   +  +P N E   L    Y    +Y  ++  Y  AL L  ++ E
Sbjct: 24  QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 27/136 (19%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A    E G   +K KDF+ A++      +LD  N +  T         G+Y K  E   K
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI++ R   E +                           ++ +KAY   G       ++K
Sbjct: 64  AIEVGRENREDY---------------------------RQIAKAYARIGNSYFKEEKYK 96

Query: 603 KAIKDLSSGLGIDPSN 618
            AI   +  L    + 
Sbjct: 97  DAIHFYNKSLAEHRTP 112

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+        AY  +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  +D+  + DP     +  +      + +         +AI+   
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 447 SAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
              E       A+ R G +     +  +AI   +K+L       
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSV 125
            N+A  Y +   +      C+KA+++     +       AY   G ++    + ++A+  
Sbjct: 42  TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 101

Query: 126 WEKGYEHALHQSAD-LKQFLELEELLTAAKQDR 157
           + K      H++ D LK+  + E++L   +Q+R
Sbjct: 102 YNKSLA--EHRTPDVLKKCQQAEKIL--KEQER 130

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------- 620
           + AL+   +   +D         +  +    G + K  +     + +   N E       
Sbjct: 21  DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLE 649
                 + Y    +Y++AI  Y+ +L   
Sbjct: 81  AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 12/66 (18%), Positives = 30/66 (45%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
                A+K       +DP+N+  +  +A+ Y   G+Y +  +  + A+++  ++ E +  
Sbjct: 18  KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77

Query: 659 QCLAFY 664
              A+ 
Sbjct: 78  IAKAYA 83

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 36/283 (12%), Positives = 83/283 (29%), Gaps = 40/283 (14%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG+ ++++ +Y SAI  F +                            + D  E  + 
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAES---------------------KLIFVKDRIEKAEF 145

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                E++    Q   ++  + +A +   +   +                  K +  A+ 
Sbjct: 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205

Query: 505 DLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLE 552
                  + +  K           +GL  +S  +Y+ A     +AI +        +  +
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSG 611
           A+  +TQ +  L   +KA E   + +   ++     Y      L  L       + +   
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325

Query: 612 L------GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                   +     +     A  YH    +++A   +     +
Sbjct: 326 FDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 76.0 bits (187), Expect = 7e-15
 Identities = 30/249 (12%), Positives = 79/249 (31%), Gaps = 31/249 (12%)

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHE------RGIVNFKFKDFNAAVE----- 504
                   E    + DL   ++ +      L E      RG+     +++ +A++     
Sbjct: 70  EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA 129

Query: 505 -DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGH 556
                 VK   E    +  +  +   + +   + +   +A ++ +          +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSS 610
               + DL   E A+   Q+   + +         +  +  GL  +   Q++ AI     
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249

Query: 611 GLGID------PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664
            + +       PS  +  +L    ++ +G+  +A + +   +     + +   L    F 
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309

Query: 665 QVLFDMEYY 673
           + L+     
Sbjct: 310 KSLYLSGPD 318

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
               ++  +Y  AIS F +         +  +    L   G  +  Q + E AI  F  A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 442 IQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--------FEPNSADILH 487
           I         PS  +A+    Q    LG+  +A +  SK +            +  + L 
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
              +     +      + L +   L  + +     +         ++KA    LK  Q+ 
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

Query: 548 RNFLE 552
           +    
Sbjct: 370 QLIQG 374

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 21/100 (21%), Positives = 41/100 (41%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   
Sbjct: 9   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           P  G+ + R+  A   L    EA +   + L+ E N+  +
Sbjct: 69  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI+ LD      Y      NR+  Y++   ++    D  K + L P   + Y  K  A
Sbjct: 28  SEAIK-LDPHNHVLY-----SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
              L R EEA   +E+G +H
Sbjct: 82  LEFLNRFEEAKRTYEEGLKH 101

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 64.9 bits (159), Expect = 5e-13
 Identities = 20/98 (20%), Positives = 45/98 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           V L  +    Y+    AL  +  +++A+  + + ++ +
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            + L E+G       + + A++  S  +KLD  N   Y+    A +  G+Y+KA E   K
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
            + L  +                                  + K Y  +   L  L + +
Sbjct: 64  TVDLKPD----------------------------------WGKGYSRKAAALEFLNRFE 89

Query: 603 KAIKDLSSGLGIDPSNIEC 621
           +A +    GL  + +N + 
Sbjct: 90  EAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 426 AFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           A     ++ A+  ++EAI+ +P     +  R  A A  G+  +A +D  K ++ +P+   
Sbjct: 14  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
               +         F  A       +K +  N      L
Sbjct: 74  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 17/82 (20%), Positives = 34/82 (41%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           + AL+C  + + +D      Y  R       G ++KA +D    + + P   +    +A+
Sbjct: 21  DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
               +  + EA + Y+  L  E
Sbjct: 81  ALEFLNRFEEAKRTYEEGLKHE 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 16/86 (18%), Positives = 28/86 (32%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459
                + +L +           G   A   + +AA+     A+  +P+   AWK  G+  
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 460 AALGESVEAIQDLSKALEFEPNSADI 485
              G+   A Q     L    +  D 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
              + L   L    ++  +    G    + + F+AA+  L A +  D     A+ +LG  
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDL 564
           L   G+   A +A    +   ++    +    L  F + L
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
            A  E L A +    +N      LG   +   ++  A      A+  D  +  AW  L +
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 560 FYQDLANSEKALECLQQVLYIDKR 583
             Q   +   A +  +  L   + 
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 13/82 (15%), Positives = 24/82 (29%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           +   E L+ +L             G       Q   A+  L + L  DP+          
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
                G+   A + +++ L   
Sbjct: 62  TLQGQGDRAGARQAWESGLAAA 83

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
             E     +    + +     L + Y +    + AL  L+  L  D  +S A+   G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            G G    A +   SGL    S  +           + E +  ++       LE
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGD--------QQVVKELQVFLRRLAREDALE 109

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
                Y++ E     +     AL  DPT   A+   G      G +  A   WE G   A
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 134 LHQSADLKQFLELEELLTAAKQDRSV 159
                D +   EL+  L    ++ ++
Sbjct: 84  -QSRGDQQVVKELQVFLRRLAREDAL 108

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 2/93 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++  R + G       ++ +A+      L  DP Y  A    G     Q +   A   + 
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 440 EAIQSNPSAG--EAWKRRGQARAALGESVEAIQ 470
             + +  S G  +  K        L        
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALEH 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.0 bits (191), Expect = 7e-15
 Identities = 112/691 (16%), Positives = 197/691 (28%), Gaps = 244/691 (35%)

Query: 65  QSYEIQDICN---RAF-----CYSQLELHKHVI--RDCDKALQLDPTLLQAYILKGCAFS 114
             Y+ +DI +    AF     C    ++ K ++   + D  +     +     L    F 
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FW 69

Query: 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTV 174
            L  K+E +                +++F+E        + +      Y     MS +  
Sbjct: 70  TLLSKQEEM----------------VQKFVE-----EVLRIN------YKFL--MSPIK- 99

Query: 175 SESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSV 234
                         +E    S +     + RD             L N     AK   +V
Sbjct: 100 --------------TEQRQPSMMTRMYIEQRDR------------LYNDNQVFAKY--NV 131

Query: 235 PVSKSGLHINGKLREVSENHN-------GSSDGSKSTHASRDASEINRQSSDDFDI---- 283
              +  L +   L E+    N       GS  G K+  A         Q   DF I    
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGS--G-KTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 284 ---CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSD 340
              CN P                   V + L      + D N  S S   S+I     S 
Sbjct: 189 LKNCNSP-----------------ETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSI 230

Query: 341 STESRSKLSFK------------WDMLKETSNEAKRNKKF---C---VTRISKSKSISVD 382
             E R  L  K             +        AK    F   C   +T  ++ K +  D
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--------AKAWNAFNLSCKILLT--TRFKQV-TD 279

Query: 383 FRLSRGIAQVNEGKYAS------AISIFDQILKEDP-MYPEALIGRGTARAFQRELEA-- 433
           F  +     ++   ++         S+  + L   P   P                E   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---------------EVLT 324

Query: 434 ----AISDFTEAIQSNPSAGEAWKRRGQAR--AALGESVEAI-----QDLSKALEFEPNS 482
                +S   E+I+   +  + WK     +    +  S+  +     + +   L   P S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 483 ADI----LHERGIV--NFKFKDFNAAVED-LSACVK---LDKENK-SAYTYLGLALSSIG 531
           A I    L    ++  +    D    V   ++   K   ++K+ K S  +   + L    
Sbjct: 385 AHIPTILL---SLIWFDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 532 EYKKAEEAHLKAI---QLDRNFLEAWGHLTQFYQD----------LANSEKALE-CLQQV 577
           + +     H   +    + + F      L   Y D          L N E      L ++
Sbjct: 438 KLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 578 LYIDKRF--------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           +++D RF        S A++  G +L+ L Q K                           
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-------------------------- 529

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQC 660
                Y+  I D D   +  ++++  F+ + 
Sbjct: 530 -----YKPYICDNDPKYERLVNAILDFLPKI 555

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 374 SKSKSISVDFRL-----SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
           S ++   ++  L     ++G     +G Y +A+  +++ +K DP        R       
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            E + A+ D    I+ +    + + R+     A+ E  +A +    AL+ +P++ +    
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           ++     P  A     +G   FK  D+  A+   +  VK D EN   Y+     L+ + E
Sbjct: 3   ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           +++A +     I+LD                                    F K Y  + 
Sbjct: 63  FQRALDDCDTCIRLDSK----------------------------------FIKGYIRKA 88

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             L  + +  KA +     L +DPSN E 
Sbjct: 89  ACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C ++L   +  + DCD  ++LD   ++ YI K     A+    +A   +E   + 
Sbjct: 51  SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 13/88 (14%), Positives = 31/88 (35%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + EA++ +P     +  R      L E   A+ D    +  +         +  
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSA 519
                ++++ A       +++D  N+ A
Sbjct: 90  CLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 18/82 (21%), Positives = 39/82 (47%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A+    + +  D   +  Y  R   L  L + ++A+ D  + + +D   I+    +A+
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
           C  A+ E+ +A + Y+ AL ++
Sbjct: 90  CLVAMREWSKAQRAYEDALQVD 111

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 69.5 bits (171), Expect = 4e-14
 Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 18/149 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A+  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 572 ECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI 619
           E  ++ L + ++       +++ +  G     L  ++KAI        ++  L       
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
              +   + Y A+G + +A+   +  L++
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 454 RRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD 498
           R  Q RA          LG   +A+    + L        +          G       +
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           F  A E     + L ++ K       +   LG   + + +Y+KA + HLK + + +   +
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 553 ------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
                 A   L   Y  L N ++A+   ++ L I + 
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 24/148 (16%)

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
           G           A+    + +      G+   +  +  A          LGE   A +  
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYY 72

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            K L            A   +  G      +D+  A++     + + +E K       A 
Sbjct: 73  KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 132

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDR 548
             LG A +++G + +A     K +++ R
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI  L+   A  Y      NR+  Y + E + + + D  +A++LD   ++ Y  +  +
Sbjct: 37  SQAIE-LNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
             ALG+   AL  +E   +   H      ++ E  +++     +R++  +    + + SL
Sbjct: 91  NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150

Query: 173 TVSESGLNANDK 184
            +    +     
Sbjct: 151 DIESMTIEDEYS 162

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +         Y +AI  + Q ++ +P        R  A         A+ D T AI+ + 
Sbjct: 19  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVE 504
              + + RR  +  ALG+   A++D    ++ +P+  D   +    N   K   F  A+ 
Sbjct: 79  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138

Query: 505 D 505
            
Sbjct: 139 G 139

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
            R   N     F AA+ D    VK+   +K A                 ++A  +AI  D
Sbjct: 86  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-----NKIVKQKAFERAIAGD 140

Query: 548 RN 549
            +
Sbjct: 141 EH 142

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 36/165 (21%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI+LD+ +                                   K Y+ R      LG+ +
Sbjct: 73  AIELDKKY----------------------------------IKGYYRRAASNMALGKFR 98

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE--YREAIKDYDAA 645
            A++D  + + + P + +       C   + +  +  AI   +  
Sbjct: 99  AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 18/100 (18%), Positives = 45/100 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 19/82 (23%), Positives = 41/82 (50%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A++   Q + ++   +  Y  R L       +  A+ D +  + +D   I+  Y RA+
Sbjct: 30  ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              A+G++R A++DY+  + ++
Sbjct: 90  SNMALGKFRAALRDYETVVKVK 111

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C+ +LE +     +  KA++ D   ++A   +  A   LGR ++A+   ++    
Sbjct: 69  RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQ 443
            G      G Y  A++ + Q L  D    +  +    R        + + A ++ ++AI+
Sbjct: 34  EGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            +    +A  RR QA   LG   +A+ DL + +  EP +      
Sbjct: 94  KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 428 QRELEAAISDFTEAIQSNPSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
             +   A++ +T+A+  + +  +     + R      L +  +A  + SKA+E +     
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519
            L+ R     K    + AV DL  CV L+ +NK  
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG---LALSSI 530
           +      +S + L + G   FK  D+  A+   +  + LD   +               +
Sbjct: 19  RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y KAE    KAI+ D                                      KA + 
Sbjct: 79  EDYDKAETEASKAIEKDGGD----------------------------------VKALYR 104

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
           R   L  LG+  +A+ DL   + ++P N   
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L  + KA  + S  +  D  +++ LY R+     +G   +A+ D    + LE
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIEC--LYL-RASCYHAIGEYREAIKDYDAALDLE 649
           G +  A+   +  LG+D +  +   L+  RA+C+  + +Y +A  +   A++ +
Sbjct: 42  GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 69.7 bits (170), Expect = 7e-13
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 16/182 (8%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-----VEAIQDLSKALEFEPNSAD 484
                        +  P  G       QA   L          A + L + ++  P    
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234

Query: 485 ILHERGIVN--------FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYK 534
              E+ +V+           K   A   ++   V L + N  +  Y    ++    G+  
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           ++ +A    I L+ ++L  +  L + Y+    + +A +       +    +  Y +   +
Sbjct: 295 ESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353

Query: 595 LH 596
             
Sbjct: 354 FQ 355

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 16/185 (8%)

Query: 504 EDLSACVKLDKENKSAYTYLGLAL-----SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
                  K+     +  T    A             +A E   + +Q    F  A     
Sbjct: 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKA 240

Query: 559 QFYQ--------DLANSEKALECLQQVLYID--KRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                       D          +  ++ +      S  Y ++ +     G+  ++ + +
Sbjct: 241 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAI 300

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLF 668
           ++G+ ++ S +    L    Y   G  REA   Y  A +L   +   + ++   F   + 
Sbjct: 301 NTGIDLEMSWLN-YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVP 359

Query: 669 DMEYY 673
            +  Y
Sbjct: 360 YVVPY 364

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 25/195 (12%), Positives = 58/195 (29%), Gaps = 46/195 (23%)

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF--------QRELEAAISDFTE 440
           +   ++     A  +  +I++  P +  A   +              +++L A  ++   
Sbjct: 207 LLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266

Query: 441 AIQSNPSAGEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
            +        +   + +A +AL  G++ E+ Q ++  ++ E +                 
Sbjct: 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL--------------- 311

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-WGHL 557
                                Y  LG      G  ++A +A+L A  L        W   
Sbjct: 312 --------------------NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIEN 351

Query: 558 TQFYQDLANSEKALE 572
             F   +      L+
Sbjct: 352 GIFQTSVPYVVPYLD 366

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQI--LKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
             +      ++E + A+  +  D I  L E          +  +   + + + +      
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
            I    S    +   G+     G + EA      A    P +  +      +
Sbjct: 303 GIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 11/75 (14%), Positives = 28/75 (37%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
               L           +A     + ++ D +++  + HL + Y+ L  ++ A++   Q +
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

Query: 579 YIDKRFSKAYHLRGL 593
            + +       L  L
Sbjct: 69  EVAREEGTQKDLSEL 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           EDP  P                  A++ F E ++++P     +   G+    L  + +AI
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 470 QDLSKALEFEPNSAD 484
              ++ +E       
Sbjct: 62  DTYAQGIEVAREEGT 76

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
           +P      +     + K  + + A+      V+ D +    Y +LG     +     A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 539 AHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKA 570
            + + I++ R          L          E  
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                   L Q +    N+ +AL   ++++  D  +   Y+  G L   L +   AI   
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           + G+ +                 + E ++A    +  
Sbjct: 65  AQGIEVAREEGTQ--------KDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
                +             +A+      +  DP  +   Y     Y  +    +AI  Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 644 AALDLELDSMEKFVLQCLA-FYQVLFDMEYY 673
             +++  +   +  L  L         +E++
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A  + + +     +   ++ ++ DP  +  Y   G  +  L R ++A+  + +G E A
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
             +    K   EL++    A+ 
Sbjct: 72  -REEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           +     +     + A+++F+++++ DP Y       G         + AI  + + I+  
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDL 472
              G       +  + L ++    + L
Sbjct: 72  REEGTQ-----KDLSELQDAKLKAEGL 93

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 19/150 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A   LG   + +  + +A  +     Q  +   +      A   +    +   N + A 
Sbjct: 27  GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86

Query: 572 ECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI 619
            C  +   +           S   +    +    G    A ++    L       D   I
Sbjct: 87  RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146

Query: 620 ECLYLR-ASCYHAIGEYREAIKDYDAALDL 648
            C +              EA + +  A D+
Sbjct: 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 14/136 (10%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF- 584
           A  +        +A    +        A   L   Y  +   ++A    Q +    ++  
Sbjct: 2   AFEAHDYALAERQAQ-ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 585 -----SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI-ECLYLRASCYHAI 632
                 +A H  G++    G    A +      +L + L  DP       Y  A+     
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120

Query: 633 GEYREAIKDYDAALDL 648
           G+   A ++Y+ +L  
Sbjct: 121 GDLAGARQEYEKSLVY 136

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 25/176 (14%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             YA A      +L        A    G   AF    + A + F    Q    +G+    
Sbjct: 6   HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---H 62

Query: 455 RGQARA---------ALGESVEAIQDLSKALEF-------EPNSADILHERGIVNFKFKD 498
             + RA           G    A +   +  E           ++   +E   V   F D
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              A ++    +   ++         A+  LG          +A++  L+A  +  
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 33/240 (13%), Positives = 62/240 (25%), Gaps = 20/240 (8%)

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADILH 487
                ++  FTE    + SA +AW      R   G+     +           +  +   
Sbjct: 20  MSEARSLDLFTEITNYDESACDAW----IGRIRCGDTDRVTLFRAWY------SRRNFGQ 69

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---LGLALSSIGEYKKAEEAHLKAI 544
             G V       NA +        +     S            ++ G Y  A EA   A 
Sbjct: 70  LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHK 602
                 L AW     +          ++ ++       +F    A    G+    L    
Sbjct: 130 VAGSEHLVAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188

Query: 603 KAIKDLSSGLG---IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           +A + L+        +       +  A    + G    A+   +       +      L+
Sbjct: 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 7/80 (8%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + I          Y      N+A    +L  +   I+ C + L+   T     I     
Sbjct: 28  DQLIT-AQPQNPVGY-----SNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
           +  L   + A+   +     
Sbjct: 82  Y-RLELAQGAVGSVQIPVVE 100

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           +  +   E+G   FK   +  AV      +    +N   Y+   +AL  +GEY +A +  
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
            + ++               Y+ L  ++ A+  +Q  +
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPV 98

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G +   +G Y  A+  +DQ++   P  P     +  A     E   AI    + ++   
Sbjct: 10  QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69

Query: 447 SAGEAWKRR------GQARAALGESVEAIQDLSKALE 477
           +A     R         A+ A+G     + ++ +  E
Sbjct: 70  TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +G +    G   EA+    + +  +P +      + +   K  ++  A++     
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           ++     +       L    +   + A  +    + 
Sbjct: 65  LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A+ C  Q++    +    Y  + + L  LG++ +AI+    GL    +      +R+ 
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEK 655
             + +   + A+      +  E+D + +
Sbjct: 80  LQYRLELAQGAVGSVQIPVV-EVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + + I + P     +  +  A   LGE  +AIQ   + L +   +  +   R  
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 492 VNFKFKDFNAAVEDL-SACVKLDKENKSA 519
           + ++ +    AV  +    V++D+  +  
Sbjct: 80  LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           G +++A+      +   P N      +A     +GEY +AI+     L   
Sbjct: 18  GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 43/318 (13%), Positives = 92/318 (28%), Gaps = 41/318 (12%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARA 426
           +  +  ++  +F   R    +N+G    A  +    L+E P         A    G    
Sbjct: 5   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 64

Query: 427 FQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARAALGESVEAIQDLSKALE--- 477
            + EL  +++   +  Q             +  ++ +   A G    A +   KA +   
Sbjct: 65  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124

Query: 478 -----FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLGLALSS 529
                  P    ++  R  + + +   + A     + +++       +       L   S
Sbjct: 125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184

Query: 530 I--GEYKKAEEAHLKAIQLDRNFLEAWGHLT-------QFYQDLANSEKALECLQQVLYI 580
           +  G+   A     +   L  N       ++        ++Q   +   A   L+     
Sbjct: 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244

Query: 581 DKRFS----KAYHLRGLLLHGLGQHKKAIKDL------SSGLGIDPSNIECLYLRASCYH 630
           +   +      +         LG+ + A   L      +  L +       L L    Y 
Sbjct: 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304

Query: 631 AIGEYREAIKDYDAALDL 648
             G   +A +    AL L
Sbjct: 305 QAGRKSDAQRVLLDALKL 322

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 50  RNWSKAIRI------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +++  AI+       L+   A  Y      NR+  Y + E + + + D  +A++LD   +
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYI 74

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           + Y  +  +  ALG+   AL  +E   +   H      ++ E  +++     +R++  + 
Sbjct: 75  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134

Query: 164 DVSNSMSSLTVSESGLNAN 182
              + + SL +    +   
Sbjct: 135 HKRSVVDSLDIESMTIEDE 153

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 24/93 (25%), Positives = 40/93 (43%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
            R   N     F AA+ D    VK+   +K A 
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              Y +AI  + Q ++ +P        R  A         A+ D T AI+ +    + + 
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADIL--HERGIVNFKFKDFNAAVEDLSACVK 511
           RR  +  ALG+   A++D    ++ +P+  D    ++      K K F  A+        
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA------- 131

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            D+  +S      L + S+    +     L+  ++  +F++  
Sbjct: 132 GDEHKRSVVD--SLDIESMTIEDEYSGPKLEDGKVTISFMKEL 172

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 27/144 (18%), Positives = 60/144 (41%), Gaps = 7/144 (4%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y+ A + + +AI+L+ +    +G+ +  Y        AL    + + +DK++ K Y+ 
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
           R      LG+ + A++D  + + + P +               E  + +K       +  
Sbjct: 80  RAASNMALGKFRAALRDYETVVKVKPHD-------KDAKMKYQECNKIVKQKAFERAIAG 132

Query: 651 DSMEKFVLQCLAFYQVLFDMEYYG 674
           D  ++ V+  L    +  + EY G
Sbjct: 133 DEHKRSVVDSLDIESMTIEDEYSG 156

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 45/106 (42%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
                 E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            D +  ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK  +N+  + K +       S++I ++     +  +R +A +    Y  A+    + 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR----RGQARAALG 463
           ++ D  Y +    R  +     +  AA+ D+   ++  P   +A  +        +    
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
           E   A  +  +++    +   +  E      K +D    +  +   ++  K+ K
Sbjct: 127 ERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQK 180

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.3 bits (137), Expect = 3e-10
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 472 LSKALEFEPNSADILHERGIV 492
             KALE +PN+A+     G  
Sbjct: 66  YQKALELDPNNAEAKQNLGNA 86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 34/115 (29%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                    A+  LG A    G+Y +A E + KA++LD N  EA  +L    Q  
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 46.6 bits (112), Expect = 7e-07
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
            ++A++  G   +  G + +AI+     L +DP+N E  Y   + Y+  G+Y EAI+ Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 644 AALDL 648
            AL+L
Sbjct: 68  KALEL 72

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 46.2 bits (111), Expect = 9e-07
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIG 633
              L +DP+N E      +     G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 25/154 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+    E+
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK--------DLSSGLG 613
                Q+ L I +          +K  +         G+ K+A                G
Sbjct: 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                N              G+ ++     +   
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
                L +  +S G Y+ A     +A++                   L   Y+D    + 
Sbjct: 28  RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI-------KDLSSGLGI 614
           A   L   L I ++         +   +   +L    G++K+A        +     LG 
Sbjct: 88  AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147

Query: 615 D-PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           D P   + L   A      G+Y E    Y  AL++
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 23/149 (15%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+Y++ E  + +A+++ +        N  +   +L   Y      ++A    
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +          G+ K        G       +D P+  
Sbjct: 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L    + Y   G++  A    +AA+  
Sbjct: 279 TTLKNLGALYRRQGKFEAAETLEEAAMRS 307

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 56.8 bits (138), Expect = 7e-09
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 24/154 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L L      +YK A      A+ +    L            +L   Y      ++
Sbjct: 70  TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 129

Query: 570 ALECLQQVLYIDKRFSKAYHLR--------GLLLHGLGQHKKAIKDLSSGLGI------- 614
           A    ++ L I ++     H           LL    G++++        L I       
Sbjct: 130 AEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189

Query: 615 -DPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
            DP+  +     ASCY   G++++A   Y   L 
Sbjct: 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  Q ++E A+    E +Q+ P    EA+   G A   LG+  +A+ +   A+E  
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 480 PNSADILHER---GIVNFKFKDF 499
           P+S  +   +    I+NF  KD 
Sbjct: 66  PDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI 442
           +L      +N+G   +A+   ++ L+ +P+   EA    G A     + + A++++  AI
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 443 QSNPSAGEAWKRR 455
           + NP +     R+
Sbjct: 63  ELNPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
               L   G  + A++ L   L  +P    E  YL  + Y  +G++++A+ +Y +A++L 
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 650 LDSME----KFVLQCLAFYQ 665
            DS      K V+  L FY 
Sbjct: 66  PDSPALQARKMVMDILNFYN 85

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEA 539
            +   L  +G       D   A++ L   ++ +   K  AY  +G A   +G+++KA   
Sbjct: 5   KTIKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN 57

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
           +  AI+L+ +                     L    + +Y        +H
Sbjct: 58  YQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHHHHH 99

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 562 QDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
            +  + E AL+ L++ L  +     +AY+L G     LG  +KA+ +  S + ++P +
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
            L + G+ + A +A  + +Q +     EA+  +   Y+ L + +KAL   Q  + ++   
Sbjct: 9   ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Query: 585 SKAYHLRGLL 594
                 + ++
Sbjct: 69  PALQARKMVM 78

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 25/154 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+   +E+
Sbjct: 86  ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI----KDLSSG----LG 613
                ++ L I            +K  +         G+++ A     + L+       G
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                N            +  + R++    +   
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 23/148 (15%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+ ++ E  + +A+++          N  +   +L   Y      + A    
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +           + + +      G       +D P+  
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALD 647
             L    + Y   G+   A    D A  
Sbjct: 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 24/149 (16%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEKALECL 574
           L L      +YK+A      A+ +    L            +L   Y      ++A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 575 QQVLYIDKRFS--------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI--------DPSN 618
           ++ L I ++          K  +   LL    G+ ++        L I        DP+ 
Sbjct: 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALD 647
            +     ASCY   G+Y++A   Y   L 
Sbjct: 169 AKTKNNLASCYLKQGKYQDAETLYKEILT 197

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 29/160 (18%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQD 563
           +   +   +   GL          A     +A++                   L   Y+D
Sbjct: 1   MGSSHHHHHHSSGL-----VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 55

Query: 564 LANSEKALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI-------KDL 608
               ++A   L   L I ++         +   +   +L    G++K+A        +  
Sbjct: 56  QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 115

Query: 609 SSGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              LG   P   + L   A      G+  E    Y  AL+
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----------------QRELEAAISD 437
           + +   AI  + + L       E        +                   ++   AI  
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
            ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   +   K K
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170

Query: 498 DFNA 501
           +   
Sbjct: 171 EARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI----------CNRAFCYSQLELHKHVIRDCDKALQL 98
           +  + +A+           +I              N A CY++ + +   I    K L++
Sbjct: 58  IVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
           D   ++A    G A    G  EEA     K      +       +      L  A++
Sbjct: 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 568 EKALECLQQVLYID--------KRFSKAYHL-RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           ++AL+        D        K    + +L      +    + KAI   S  L ID +N
Sbjct: 62  KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           ++ LY         G   EA ++   A  L 
Sbjct: 122 VKALYKLGVANMYFGFLEEAKENLYKAASLN 152

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+                Y     AL      ++ ++  
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIV--------------KYKE---ALDFFIHTEEWDDQI 78

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 79  -LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            K K+I +   L+          Y  AI    ++LK D    +AL   G A  +   LE 
Sbjct: 81  DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140

Query: 434 AISDFTEAIQSNPSAGEA 451
           A  +  +A   NP+  + 
Sbjct: 141 AKENLYKAASLNPNNLDI 158

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 26/111 (23%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI------------CNRAFCYSQLELHKHVIRDCDKAL 96
           +  +  A+  LD+L+ +    +               N + CY  +           + L
Sbjct: 31  IDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           + + T  +A   +  A  A  + +EA                DLK  L   
Sbjct: 91  KREETNEKALFRRAKARIAAWKLDEAE--------------EDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARA-----------FQRELEAAISDFTEAIQS 444
            Y  A++  D ++  +       +                     +L  A    +E ++ 
Sbjct: 33  AYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
             +  +A  RR +AR A  +  EA +DL   L   P +A ++  
Sbjct: 93  EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           +G   +A +  S  L  + +N + L+ RA    A  +  EA +D    L   
Sbjct: 76  IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  Y  AI  +   L                          +      + +N        
Sbjct: 24  QKDYKEAIDAYRDALTRLDTLILR-------EKPGEPEWVELDRKNIPLYAN-------- 68

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q    +G+  EA +  S+ L+ E  +   L  R          + A EDL   ++  
Sbjct: 69  -MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 514 KENKSAYT-YLGLALSSIGEYKKAEEAHLK 542
               S     + +      E K        
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYS 157

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            S + L ++G   F  KD+  A++     +                    GE +  E   
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------REKPGEPEWVELDR 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
                        + +++Q Y ++ +  +A E   +VL  ++   KA   R        +
Sbjct: 61  KNIP--------LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK 112

Query: 601 HKKAIKDLSSGLGIDPSN 618
             +A +DL   L   P+ 
Sbjct: 113 LDEAEEDLKLLLRNHPAA 130

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            +    ++    +     +N G    A     ++LK +    +AL  R  AR    +L+ 
Sbjct: 56  VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115

Query: 434 AISDFTEAIQSNPSAGEAWKR 454
           A  D    ++++P+A     R
Sbjct: 116 AEEDLKLLLRNHPAAASVVAR 136

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTA--------RAF----QREL 431
           RG     EGKY  A+  + +I+     +  +      +  A         A      +  
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272

Query: 492 VNFKFKDFNA 501
              + +   A
Sbjct: 273 CQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---------CNRAFCYSQLELHKHVIRDCDKALQLD 99
           L  + K +  L+   + S E              N A C+ +L+     I  C+KAL+LD
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
               +    +G A  A+   E A + ++K  +   +  A   Q    ++ +     
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L     AI+  +  L +D +N + L  R   + A+ ++  A  D+   L L 
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 34/161 (21%), Positives = 49/161 (30%), Gaps = 19/161 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             + I+ ERG V FK   +  A+      V           +L    S   E  +  +A 
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVS----------WLEYESSFSNEEAQKAQAL 194

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
             A  L  N       L   +  L     A+E   + L +D    K    RG     +  
Sbjct: 195 RLASHL--N-------LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641
            + A  D    L + P+N       A C   I       K 
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 17/77 (22%), Positives = 37/77 (48%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434
           K++++ +   L+  +  +    +++AI   ++ L+ D    + L  RG A     + E A
Sbjct: 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA 249

Query: 435 ISDFTEAIQSNPSAGEA 451
            +DF + +Q  P+   A
Sbjct: 250 RADFQKVLQLYPNNKAA 266

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 23/72 (31%), Positives = 32/72 (44%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           + + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E 
Sbjct: 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347

Query: 490 GIVNFKFKDFNA 501
             V  K K    
Sbjct: 348 LKVKQKIKAQKD 359

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           + +   A+    +ALE +P++   L+ R       K+++ A+ DL    ++  E+K+   
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345

Query: 522 YLGLALSSIGEYKKAEEAHLK 542
            L      I   K  E+A   
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYA 366

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           +   + A+      L IDPSN + LY RA  +  + EY +A+ D   A ++ 
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 24/109 (22%)

Query: 49  LRNWSKAIRILD--------SLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQL 98
           ++ ++K +R ++        +  A+   +   C  N   C  ++   +  +  C +AL++
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           DP+  +A   +   +  L   ++AL              ADLK+  E+ 
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQAL--------------ADLKKAQEIA 337

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFD---QILKEDPMYPEALIGRGTARAF------ 427
           +  + D R   G +   E K   A+  ++     + +D M+      +  A A       
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 428 --------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                    +  + AI      +       +A  RRG+A+A LG+   A  D  KA ++ 
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

Query: 480 PNSADILHERGIVNFKFKDFNA 501
           P+   I  E   +  + K    
Sbjct: 295 PDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 49  LRNWSKAIRIL---------DSLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQ 97
           ++ +  AI  +               +  +++ C  N A C  +L+ +   I  C+  L 
Sbjct: 199 MQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258

Query: 98  LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
            +    +A   +G A + LG+ + A   + K  ++A    A  ++   L E   A  Q
Sbjct: 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L ++ +AI   +  L  +  N + L+ R      +G+   A  D+  A    
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 17/155 (10%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           AD     G   FK +    A++     +    ++              G+Y+    A   
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVKN 230

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              L  N       +      L   ++A+     VL  +++  KA   RG     LGQ  
Sbjct: 231 PCHL--N-------IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMD 281

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            A  D        P +        +         +
Sbjct: 282 SARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            RE   A+    +A+  + +  +   RRG+A+  + E   A  D  K LE  P +     
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 488 ERGIVNFKFKDFNA 501
           +  +   K K+ N 
Sbjct: 390 QISMCQKKAKEHNE 403

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDIC---------NRAFCYSQLELHKHVIRDCDKALQLD 99
           +  + K +  L+     S +              N A CY +L  +   +  CDKAL LD
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
               +    +G A   +   E A                D ++ LE+ 
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAK--------------GDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           L E  +A++   KAL  +  +   L+ RG       +F +A  D    ++++ +NK+A  
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 522 YLGLALSSIGEYKKAE 537
            + +      E+ + +
Sbjct: 390 QISMCQKKAKEHNERD 405

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHG--------LGQHKKAIKDLSSGLGIDPSNI 619
            K +  L+    + ++ SKA     L            L ++ KA++     LG+D +N 
Sbjct: 292 GKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 351

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           + LY R      + E+  A  D++  L++ 
Sbjct: 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
            I+ E+G V FK   +  AV           +     ++L +      +  KA E+ L A
Sbjct: 269 AIVKEKGTVYFKGGKYMQAV----------IQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
             L+         L   Y  L    KA+EC  + L +D    K  + RG     + + + 
Sbjct: 319 AFLN---------LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 369

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641
           A  D    L ++P N       + C     E+ E  + 
Sbjct: 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 26/193 (13%), Positives = 56/193 (29%), Gaps = 23/193 (11%)

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDF 499
            SA   + +   A     +  +A     +  E         ++A    + G++    +  
Sbjct: 33  DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92

Query: 500 NAAVEDLSACVKL----DKENKSAYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNF---- 550
             AV+ +     +       + +A        L    +  KA   + +A  +  N     
Sbjct: 93  PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLR 152

Query: 551 --LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHK 602
              E  G  ++        ++A   LQ+   + K         K    + L+      + 
Sbjct: 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 603 KAIKDLSSGLGID 615
            A K +     I 
Sbjct: 213 AAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 17/148 (11%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
           S Y    +A  +  + ++A++A+L+  +   N         A+       +DL    +A+
Sbjct: 37  SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96

Query: 572 ECLQQVLYI---DKRFSKA--YHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIE 620
           + +++   +   +     A     R   L       KA+        +           E
Sbjct: 97  QYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAE 156

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDL 648
            +   +       ++ EA         +
Sbjct: 157 LIGKASRLLVRQQKFDEAAASLQKEKSM 184

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 32/233 (13%), Positives = 68/233 (29%), Gaps = 38/233 (16%)

Query: 467 EAIQDLSKALEFEPNS-----------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           EA + ++KA ++   S           A    +  +     K    A +      +    
Sbjct: 9   EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN 68

Query: 516 NKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQD 563
           N+S      A+   G+ L  +    +A +   KA  +            A     +  + 
Sbjct: 69  NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSG 611
           L +  KA+   QQ   + +        ++       LL    +  +A         +   
Sbjct: 129 L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE--LDSMEKFVLQCLA 662
           +   P+  +    +        +Y  A K    +  +     S +   L+ L 
Sbjct: 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL 240

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 15/131 (11%), Positives = 42/131 (32%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L +    + +G++A A+++   +  E     +  + +       ++ E A          
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                                   ++ L + L   P++ ++  E  +   +      A+E
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129

Query: 505 DLSACVKLDKE 515
            L   +K++  
Sbjct: 130 LLWNILKVNLG 140

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 25/143 (17%), Positives = 48/143 (33%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SN S  E   ++       GE  +A+  +    +   +  D+   +     + K F  A 
Sbjct: 1   SNASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           E L+      ++N        L L          +   + +  + +  E    L   Y  
Sbjct: 61  ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120

Query: 564 LANSEKALECLQQVLYIDKRFSK 586
           +   E+ALE L  +L ++     
Sbjct: 121 VGRDEEALELLWNILKVNLGAQD 143

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
                +  GKY  A  +F   L+        P AL   G +    R  + A + F + + 
Sbjct: 8   VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67

Query: 444 SNPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
             P+   A     + G ++   G++ EA Q L +     P S 
Sbjct: 68  RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 23/122 (18%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------------ALIGRGTARAFQRE 430
             LS    Q+  G+Y  A +   + ++     P                G   A A  R 
Sbjct: 13  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72

Query: 431 LEAAISDFTEAIQS-------NPSAGEAWK----RRGQARAALGESVEAIQDLSKALEFE 479
            + A+    +A+         N   G+ W      R  A   LG   EA+ +  K +E  
Sbjct: 73  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132

Query: 480 PN 481
             
Sbjct: 133 EE 134

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 25/148 (16%)

Query: 510 VKLDKENKSAYTYLGLALSSI--GEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA 565
           +K  KE   AY  L  A   +  GEY +A     +A+++       EA+ H        A
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA 61

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IEC 621
              +AL  L       + F +A          L    KA+   +    ++       I  
Sbjct: 62  GLAEALAGL-------RSFDEA----------LHSADKALHYFNRRGELNQDEGKLWISA 104

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLE 649
           +Y RA     +G   EA+ ++   +++ 
Sbjct: 105 VYSRALALDGLGRGAEAMPEFKKVVEMI 132

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
                         E   A ++ LKA    +           +    + ++   NS  A+
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97

Query: 572 ECLQQVLYI---DKRFSKA----YHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSN 618
           + L+  + I     +F +     + L  +L + L  + KAI       +  +       +
Sbjct: 98  DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
            +C    A      G+Y EA   Y   +   + +
Sbjct: 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 17/170 (10%), Positives = 52/170 (30%), Gaps = 24/170 (14%)

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALEC 573
             Y+   +    +Y+       K +            L     +   Y +    +K ++ 
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177

Query: 574 LQQVLYIDKRFSKAYHLR-------GLLLHGLGQHKKAIK------DLSSGLGIDPSNIE 620
            +Q+L   +                   L+   ++++++       ++S  +       +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237

Query: 621 CLYLRASCYHAIGEYREAIKDY-DAALDL----ELDSMEKFVLQCLAFYQ 665
             Y R  C   +      I+D    A       E+ + ++ ++  ++  +
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLE 287

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 2/129 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
            +  + E  Y  A+ +     +      E  +            E A       I     
Sbjct: 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDA-EAVLXTIPLQDQ 182

Query: 448 AGEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    Q            IQ L + +   P  A +  +  +   +      A+E L
Sbjct: 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242

Query: 507 SACVKLDKE 515
              ++ D  
Sbjct: 243 FGHLRXDLT 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	676
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.92
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.88
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.87
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.85
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.85
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.85
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.84
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.83
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.81
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.8
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.77
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.76
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.73
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.72
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.71
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.7
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.69
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.68
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.65
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.63
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.63
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.61
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.61
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.56
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.53
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.52
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.48
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.47
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.46
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.44
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.44
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.42
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.4
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.4
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.37
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.37
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.33
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.33
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.31
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.31
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.3
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.26
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.25
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.19
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.99
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.92
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.87
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.86
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.83
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.83
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.8
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.78
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.77
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.65
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.54
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.47
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.46
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.38
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.33
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.29
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.17
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.13
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.1
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.06
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.84
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.81
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.77
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.55
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.39
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.24
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.06
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.9
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.85
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.41
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.4
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.32
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.08
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.5
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.12
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.0
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.81
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.72
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.65
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.3
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.14
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.54
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.08
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.98
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.89
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.63
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.79
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.45
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	91.42
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.72
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.42
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.33
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.26
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.87
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.83
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.78
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	89.36
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.19

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=8.6e-42  Score=355.17  Aligned_cols=379  Identities=18%  Similarity=0.186  Sum_probs=361.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005808           44 AKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA  122 (676)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A  122 (676)
                      ..++..|+|++|+..|.++++.+ .+...+..+|.+++..|++++|+..+++++..+|.++.+++.+|.+|...|++++|
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            45789999999999999999999 45566889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCc
Q 005808          123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS  202 (676)
Q Consensus       123 ~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (676)
                      +..|++++.++|                                                                    
T Consensus        87 ~~~~~~al~~~p--------------------------------------------------------------------   98 (388)
T 1w3b_A           87 IEHYRHALRLKP--------------------------------------------------------------------   98 (388)
T ss_dssp             HHHHHHHHHHCT--------------------------------------------------------------------
T ss_pred             HHHHHHHHHcCc--------------------------------------------------------------------
Confidence            999999943322                                                                    


Q ss_pred             CCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCcc
Q 005808          203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD  282 (676)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (676)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (388)
T 1w3b_A           99 --------------------------------------------------------------------------------   98 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHH
Q 005808          283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA  362 (676)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (676)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (388)
T 1w3b_A           99 --------------------------------------------------------------------------------   98 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (676)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (676)
                                      ..+..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus        99 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           99 ----------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ----------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                            1255677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005808          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (676)
Q Consensus       443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (676)
                      ..+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|++..++..
T Consensus       163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  242 (388)
T 1w3b_A          163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN  242 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (676)
                      +|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|+++
T Consensus       243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  322 (388)
T 1w3b_A          243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  666 (676)
                      +|+..|+++++..|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..+
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999887653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.7e-38  Score=328.72  Aligned_cols=378  Identities=18%  Similarity=0.213  Sum_probs=344.6

Q ss_pred             hhhhhhhhhhhhhcccchhhhhhhhhHHHHHHHHHH-HHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHH
Q 005808           10 RYRLNKTHKTICEIDELVRVDSVMASAITARIELAK-LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKH   87 (676)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~   87 (676)
                      .|+.++.++-+.-...+++.+   |........++. ++..|++++|+.+++++++.+ .+...+.++|.++.+.|++++
T Consensus         9 ~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            9 EYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            455566665544444444433   322233333344 578999999999999999999 566779999999999999999


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccc
Q 005808           88 VIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSN  167 (676)
Q Consensus        88 A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~  167 (676)
                      |+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+                                
T Consensus        86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------  133 (388)
T 1w3b_A           86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD--------------------------------  133 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--------------------------------
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------
Confidence            999999999999999999999999999999999999999999433321                                


Q ss_pred             cCCCccccccccCCCCCCccccccCCCCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCcc
Q 005808          168 SMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKL  247 (676)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (676)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (388)
T 1w3b_A          134 --------------------------------------------------------------------------------  133 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCCCCCcccccccchhhcccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccc
Q 005808          248 REVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES  327 (676)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  327 (676)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (388)
T 1w3b_A          134 --------------------------------------------------------------------------------  133 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI  407 (676)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~  407 (676)
                                                                          ....+..+|.++...|++++|+..|+++
T Consensus       134 ----------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A          134 ----------------------------------------------------LYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             ----------------------------------------------------CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ----------------------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                                                                1445667788999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005808          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (676)
Q Consensus       408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  487 (676)
                      +..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|+++.++.
T Consensus       162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (388)
T 1w3b_A          162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (676)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  567 (676)
                      .+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc
Q 005808          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (676)
Q Consensus       568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (676)
                      ++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999999999999999988874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-38  Score=342.65  Aligned_cols=458  Identities=18%  Similarity=0.179  Sum_probs=370.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005808           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (676)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~  120 (676)
                      ..+..++..|+|++|+.+|+++++.+|++..+.++|.|++++|++++|+..++++++++|+++.+++.+|.+|..+|+++
T Consensus        11 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~   90 (514)
T 2gw1_A           11 DKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFA   90 (514)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcccc
Q 005808          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS  200 (676)
Q Consensus       121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (676)
                      +|+..|++++.+.|.........+.....................            .                      
T Consensus        91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~----------------------  136 (514)
T 2gw1_A           91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT------------A----------------------  136 (514)
T ss_dssp             HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------------
T ss_pred             HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH------------H----------------------
Confidence            999999999999987766554443332222111111100000000            0                      


Q ss_pred             CcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCC
Q 005808          201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD  280 (676)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (676)
                                    ...+.....     ....   ......                                       
T Consensus       137 --------------~~~~~~~~~-----~~~~---~~~~~~---------------------------------------  155 (514)
T 2gw1_A          137 --------------TATPTELST-----QPAK---ERKDKQ---------------------------------------  155 (514)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------HHhhhhccC-----Chhh---HHHhhc---------------------------------------
Confidence                          000000000     0000   000000                                       


Q ss_pred             cccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhh
Q 005808          281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN  360 (676)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (676)
                                                                             ...+...    .+....+.......
T Consensus       156 -------------------------------------------------------~~~~~~~----~~~~~~~~~~~~~~  176 (514)
T 2gw1_A          156 -------------------------------------------------------ENLPSVT----SMASFFGIFKPELT  176 (514)
T ss_dssp             --------------------------------------------------------CCCCHH----HHHHHHTTSCCCCC
T ss_pred             -------------------------------------------------------cCCchhH----HHHHHHhhcCHHHH
Confidence                                                                   0000000    00000000000000


Q ss_pred             HHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHH
Q 005808          361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEALIGRGT  423 (676)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~la~  423 (676)
                                 ...-..|.++..++..|.+++.   .|++++|+..|++++.     .  +       |.++.++..+|.
T Consensus       177 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (514)
T 2gw1_A          177 -----------FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI  245 (514)
T ss_dssp             -----------CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence                       0000124558888999999887   8999999999999999     5  4       445678999999


Q ss_pred             HHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005808          424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV  503 (676)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  503 (676)
                      ++...|++++|+..|++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+
T Consensus       246 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  324 (514)
T 2gw1_A          246 FKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG  324 (514)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                      ..+++++...|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cHH------HHHHHHHHHHH---cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          584 FSK------AYHLRGLLLHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       584 ~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      ++.      ++..+|.++..   .|++++|+..|++++...|+++.++..+|.++...|++++|..+|+++++++|+++.
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  484 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE  484 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence            754      99999999999   999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 005808          655 KFVLQCLAFY  664 (676)
Q Consensus       655 ~~~~~~~~~~  664 (676)
                      .+..+.....
T Consensus       485 ~~~~~~~~~~  494 (514)
T 2gw1_A          485 KLQAITFAEA  494 (514)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8776654443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-36  Score=334.17  Aligned_cols=287  Identities=15%  Similarity=0.123  Sum_probs=277.9

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      +.++..++.+|..+...|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+++++...|++..++..+|.
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            57799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      +|...|++++|+.+|+++++..|.+..+|..++.++...|++++|+..|++++...|++..++..+|.++...|++++|+
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  461 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN  461 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~  610 (676)
                      .+|+++++..|.++.++..+|.++...|++++|+..|+++++.      .|+. ..++..+|.++...|++++|+..|++
T Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987      5654 78999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      +++..|+++.++..+|.+|...|++++|..+|+++++++|+++.++..++.+|.
T Consensus       542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988887653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.1e-36  Score=331.19  Aligned_cols=438  Identities=17%  Similarity=0.144  Sum_probs=334.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005808           40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (676)
Q Consensus        40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~  118 (676)
                      ...+..++..|+|++|+.+|+++++.+ .++..+.++|.|++++|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus        29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  108 (537)
T 3fp2_A           29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN  108 (537)
T ss_dssp             HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence            355566789999999999999999999 5677799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcc
Q 005808          119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC  198 (676)
Q Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (676)
                      +++|+..|+ ++.+.|+............-....+....     ...                                 
T Consensus       109 ~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~---------------------------------  149 (537)
T 3fp2_A          109 FTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NEN---------------------------------  149 (537)
T ss_dssp             HHHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHH---------------------------------
T ss_pred             HHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHH-----HHH---------------------------------
Confidence            999999995 87777765543211111000011110000     000                                 


Q ss_pred             ccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCC
Q 005808          199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS  278 (676)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (676)
                                  +..   .|......   .+....+..+.                                        
T Consensus       150 ------------l~~---~~~~~~~~---~~~~~~~~~~~----------------------------------------  171 (537)
T 3fp2_A          150 ------------LSK---DEGRGSQV---LPSNTSLASFF----------------------------------------  171 (537)
T ss_dssp             ------------CC----------CC---CCCHHHHHHHH----------------------------------------
T ss_pred             ------------HHh---Cccccccc---cchHhHHHHHH----------------------------------------
Confidence                        000   00000000   00000000000                                        


Q ss_pred             CCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhh
Q 005808          279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET  358 (676)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (676)
                                                                                                ..    
T Consensus       172 --------------------------------------------------------------------------~~----  173 (537)
T 3fp2_A          172 --------------------------------------------------------------------------GI----  173 (537)
T ss_dssp             --------------------------------------------------------------------------HT----
T ss_pred             --------------------------------------------------------------------------Hh----
Confidence                                                                                      00    


Q ss_pred             hhHHHHhhHHHHHHh---hccCCCcHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHH
Q 005808          359 SNEAKRNKKFCVTRI---SKSKSISVDFRLS--------RGIAQVNEGKYASAISIFDQILKEDPMYPE-------ALIG  420 (676)
Q Consensus       359 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~  420 (676)
                      ...     ...+...   ....+........        .+......|++++|+..|+++++.+|+++.       ++..
T Consensus       174 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  248 (537)
T 3fp2_A          174 FDS-----HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCY  248 (537)
T ss_dssp             SCH-----HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred             cCh-----HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH
Confidence            000     0000000   0000000111111        133334457899999999999999999865       5778


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 005808          421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (676)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (676)
                      +|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+++
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Confidence            888999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (676)
Q Consensus       501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (676)
                      +|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..|++++..
T Consensus       328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcCcH------HHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808          581 DKRFS------KAYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (676)
Q Consensus       581 ~~~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (676)
                      .|.+.      ..+..+|.++...          |++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++
T Consensus       408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (537)
T 3fp2_A          408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED  487 (537)
T ss_dssp             HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            77544      3366778899998          9999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCcHHHHHH
Q 005808          645 ALDLELDSMEKFVL  658 (676)
Q Consensus       645 al~~~p~~~~~~~~  658 (676)
                      +++++|+..+....
T Consensus       488 al~~~~~~~~~~~~  501 (537)
T 3fp2_A          488 SAILARTMDEKLQA  501 (537)
T ss_dssp             HHHHC--CHHHHHH
T ss_pred             HHHhCCCcHHHHHH
Confidence            99999998886443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-34  Score=318.63  Aligned_cols=282  Identities=14%  Similarity=0.089  Sum_probs=268.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  464 (676)
                      ..++..+...|++++|+.+|+++++. |.+..++..+|.++...|++++|+..|++++..+|.+..++..++.++...|+
T Consensus       276 ~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  354 (597)
T 2xpi_A          276 MLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE  354 (597)
T ss_dssp             HTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence            33466677889999999999999887 77899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (676)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (676)
                      +++|+..+++++...|.+..++..+|.+|...|++++|+..|+++++..|.+..+|..++.++...|++++|+..|++++
T Consensus       355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  434 (597)
T 2xpi_A          355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA  434 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCC
Q 005808          545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------DPSN  618 (676)
Q Consensus       545 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~  618 (676)
                      +..|.+..++..++.+|...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.      +|++
T Consensus       435 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~  514 (597)
T 2xpi_A          435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP  514 (597)
T ss_dssp             HTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred             HhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987      6664


Q ss_pred             -HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          619 -IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       619 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                       ..++..+|.++...|++++|+..|+++++++|++..+|..++.++....
T Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence             7899999999999999999999999999999999999999999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.8e-33  Score=298.47  Aligned_cols=271  Identities=19%  Similarity=0.235  Sum_probs=212.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCC
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGR------------GTARAFQRELEAAISDFTEAIQSNP  446 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~  446 (676)
                      ..++.+|.++...|++++|+..|+++++.+|.+.   .++..+            |.++...|++++|+..|++++...|
T Consensus        95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A           95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3444555566666666666666666666666555   444333            5557777777777777777777777


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL---  523 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l---  523 (676)
                      .+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++...+..+   
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  254 (450)
T 2y4t_A          175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV  254 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            77777777777777778888888888777777777777777778777777888888888887777777777666555   


Q ss_pred             ---------HHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHH
Q 005808          524 ---------GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (676)
Q Consensus       524 ---------a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  590 (676)
                               |.++...|++++|+.+|++++...|.++    ..+..+|.++...|++++|+..+++++...|+++.++..
T Consensus       255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  334 (450)
T 2y4t_A          255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD  334 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence                     8888899999999999999999888874    477888999999999999999999999999998999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH------------HHhc-----cHHHHHHHHHH-HHhhCCCc
Q 005808          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY------------HAIG-----EYREAIKDYDA-ALDLELDS  652 (676)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------------~~~g-----~~~~A~~~~~~-al~~~p~~  652 (676)
                      +|.++...|++++|+..|+++++.+|+++.++..++.+.            ..+|     +.+++.+.|++ +++..|++
T Consensus       335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~  414 (450)
T 2y4t_A          335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN  414 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999998888554            3344     55677888886 88888875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=4.5e-33  Score=295.43  Aligned_cols=364  Identities=15%  Similarity=0.136  Sum_probs=318.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 005808           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (676)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~  121 (676)
                      +..++..|+|++|+.+|+++++.+ .+...+.++|.+++.+|++++|+..++++++++|+++.+++.+|.+|..+|++++
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  112 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE  112 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            345678999999999999999998 5677799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcc
Q 005808          122 ALSVWEKGYEHALHQS---ADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC  198 (676)
Q Consensus       122 A~~~~~~al~~~~~~~---~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (676)
                      |+..|+++++++|+.+   .....+..+                                                    
T Consensus       113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------------------------------------------  140 (450)
T 2y4t_A          113 AEDDFKKVLKSNPSENEEKEAQSQLIKS----------------------------------------------------  140 (450)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHH----------------------------------------------------
Confidence            9999999976665532   111100000                                                    


Q ss_pred             ccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCC
Q 005808          199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS  278 (676)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (676)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (450)
T 2y4t_A          141 --------------------------------------------------------------------------------  140 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhh
Q 005808          279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET  358 (676)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (676)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (450)
T 2y4t_A          141 --------------------------------------------------------------------------------  140 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808          359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF  438 (676)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  438 (676)
                                          .....++.+|..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|
T Consensus       141 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  200 (450)
T 2y4t_A          141 --------------------DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL  200 (450)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                003345677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHHHHHHH
Q 005808          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER------------GIVNFKFKDFNAAVEDL  506 (676)
Q Consensus       439 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~  506 (676)
                      ++++..+|.+..++..+|.++...|++++|+..|++++...|++...+..+            |.++...|++++|+..+
T Consensus       201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  280 (450)
T 2y4t_A          201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY  280 (450)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999998887666            99999999999999999


Q ss_pred             HHHHHhCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808          507 SACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (676)
Q Consensus       507 ~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  582 (676)
                      ++++...|+++.    .+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|
T Consensus       281 ~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  360 (450)
T 2y4t_A          281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE  360 (450)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            999999999854    7888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-hhcCCCCCH----------HHHHHHHHHHHHhcc
Q 005808          583 RFSKAYHLRGLL------------LHGLG-----QHKKAIKDLSS-GLGIDPSNI----------ECLYLRASCYHAIGE  634 (676)
Q Consensus       583 ~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~~----------~~~~~la~~~~~~g~  634 (676)
                      +++.++..++.+            |...|     +.+++.+.|++ +++..|++.          ..+..++.+|..+++
T Consensus       361 ~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d  440 (450)
T 2y4t_A          361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD  440 (450)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred             chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999955            44445     56777888886 787777642          244556666666666


Q ss_pred             HHHH
Q 005808          635 YREA  638 (676)
Q Consensus       635 ~~~A  638 (676)
                      .+++
T Consensus       441 ~~~r  444 (450)
T 2y4t_A          441 PEMR  444 (450)
T ss_dssp             GGGC
T ss_pred             HHHH
Confidence            5543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=5.8e-32  Score=277.23  Aligned_cols=261  Identities=20%  Similarity=0.207  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCC
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDP---MYPEALIGR------------GTARAFQRELEAAISDFTEAIQSNP  446 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~  446 (676)
                      ..++.+|.++...|++++|+..|+++++.+|   +++.++..+            |.++...|++++|+..+++++...|
T Consensus        72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A           72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3445556666666666666666666666666   555555554            4555555555555555555555555


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      .++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++..+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  231 (359)
T 3ieg_A          152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV  231 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555554433322111


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH----HHHHHHHHHHHcCCHH
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK----AYHLRGLLLHGLGQHK  602 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~  602 (676)
                      .                      .......+|.++...|++++|+..+++++...|+++.    ++..+|.++...|+++
T Consensus       232 ~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  289 (359)
T 3ieg_A          232 K----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV  289 (359)
T ss_dssp             H----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             H----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence            0                      0112223466666677777777777777766666553    3445677777777777


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      +|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..+..+..
T Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777766666555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-33  Score=302.35  Aligned_cols=253  Identities=16%  Similarity=0.122  Sum_probs=239.9

Q ss_pred             CHHHHHHHHHHHHH---cccHHHHHHHHHHHHH-----h--C-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          414 YPEALIGRGTARAF---QRELEAAISDFTEAIQ-----S--N-------PSAGEAWKRRGQARAALGESVEAIQDLSKAL  476 (676)
Q Consensus       414 ~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  476 (676)
                      ++.+++.+|.+++.   .|++++|+..|++++.     .  .       |.+..++..+|.++...|++++|+..+++++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  264 (514)
T 2gw1_A          185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI  264 (514)
T ss_dssp             HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            37788888988887   8999999999999999     5  3       4456789999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Q 005808          477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (676)
Q Consensus       477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  556 (676)
                      ...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..
T Consensus       265 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  343 (514)
T 2gw1_A          265 ELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ  343 (514)
T ss_dssp             HHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred             hhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence            99999 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH------HHHHHHHHHH
Q 005808          557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------CLYLRASCYH  630 (676)
Q Consensus       557 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~  630 (676)
                      +|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|+++.      ++..+|.++.
T Consensus       344 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  423 (514)
T 2gw1_A          344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT  423 (514)
T ss_dssp             HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999888754      9999999999


Q ss_pred             H---hccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          631 A---IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       631 ~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      .   .|++++|+..|+++++.+|++..++..++.++.+..
T Consensus       424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  463 (514)
T 2gw1_A          424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE  463 (514)
T ss_dssp             TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            9   999999999999999999999999999999887654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.7e-31  Score=273.76  Aligned_cols=288  Identities=22%  Similarity=0.220  Sum_probs=274.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      +++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFEP---NSADILHER------------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                      ...|++++|+..|++++...|   .++.++..+            |.++...|++++|+..+++++...|.++.++..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   888888777            78999999999999999999999999999999999


Q ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHH------------HHH
Q 005808          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH------------LRG  592 (676)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~la  592 (676)
                      .++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++.            .+|
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887654            448


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          593 LLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      .++...|++++|+..++++++..|+++.    ++..+|.++...|++++|+..|+++++.+|+++.++..++.++....
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE  320 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence            8899999999999999999999999874    46679999999999999999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.4e-32  Score=298.59  Aligned_cols=240  Identities=14%  Similarity=0.095  Sum_probs=223.9

Q ss_pred             HcccHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005808          427 FQRELEAAISDFTEAIQSNPSAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF  499 (676)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  499 (676)
                      ..|++++|+..|+++++.+|++..       ++..+|.++...|++++|+..|++++...|. +.++..+|.++...|++
T Consensus       214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH
Confidence            346899999999999999999855       5777889999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (676)
Q Consensus       500 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  579 (676)
                      ++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH------HHHHHHHHHHHHh----------ccHHHHHHHHH
Q 005808          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI------ECLYLRASCYHAI----------GEYREAIKDYD  643 (676)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~  643 (676)
                      ..|.++.++..+|.++...|++++|+..|+++++..|++.      ..+..+|.++...          |++++|+.+|+
T Consensus       373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  452 (537)
T 3fp2_A          373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT  452 (537)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence            9999999999999999999999999999999998876654      3467778999999          99999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHhh
Q 005808          644 AALDLELDSMEKFVLQCLAFYQVL  667 (676)
Q Consensus       644 ~al~~~p~~~~~~~~~~~~~~~~~  667 (676)
                      ++++.+|++..++..++.++....
T Consensus       453 ~a~~~~p~~~~~~~~l~~~~~~~g  476 (537)
T 3fp2_A          453 KACELDPRSEQAKIGLAQLKLQME  476 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999987654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=285.11  Aligned_cols=265  Identities=18%  Similarity=0.092  Sum_probs=120.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHH
Q 005808          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEA  468 (676)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A  468 (676)
                      +|++|+.+|+++++.+|+++.++..+|.++...   ++.++|+..++++++++|++..++..+|..+...    |++++|
T Consensus       153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a  232 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG  232 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHH
Confidence            445555555555555555555544444443322   2334445555555555555544444444333322    334445


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------------
Q 005808          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI------------------  530 (676)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------------------  530 (676)
                      +.++++++..+|..+.++..+|.+|...|++++|+..++++++.+|++..++..+|.+|...                  
T Consensus       233 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~  312 (472)
T 4g1t_A          233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL  312 (472)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555554444444321                  


Q ss_pred             -ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH---HHHHHHHH-HHHcCCHHHHH
Q 005808          531 -GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK---AYHLRGLL-LHGLGQHKKAI  605 (676)
Q Consensus       531 -g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~  605 (676)
                       +.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|+++++..|.+..   ++..+|.+ +...|++++|+
T Consensus       313 ~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai  392 (472)
T 4g1t_A          313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI  392 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence             12344444455555555554444555555555555555555555555544443221   22333322 23344455555


Q ss_pred             HHHHH------------------------hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 005808          606 KDLSS------------------------GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (676)
Q Consensus       606 ~~~~~------------------------al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (676)
                      ..|++                        ++..+|+++.++..+|.+|...|++++|+.+|++++++.|.++.+...+|
T Consensus       393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            54444                        44556777889999999999999999999999999999999998876654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.1e-32  Score=273.30  Aligned_cols=297  Identities=14%  Similarity=0.086  Sum_probs=281.0

Q ss_pred             hhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 005808          373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      .....+.+++.++.+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+++++..+|+++.++
T Consensus        14 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   93 (330)
T 3hym_B           14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW   93 (330)
T ss_dssp             ------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHH
Confidence            34455677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005808          453 KRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (676)
Q Consensus       453 ~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  531 (676)
                      ..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|
T Consensus        94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            99999999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------cCcHHHHHHHHHHHHHcCCHH
Q 005808          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID---------KRFSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~  602 (676)
                      ++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...         |..+.++..+|.++...|+++
T Consensus       174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999999999999999999999999875         666789999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD  669 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  669 (676)
                      +|+..|+++++..|+++.++..+|.++..+|++++|..+|+++++++|++..++..++.++....-+
T Consensus       254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999988554433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=269.83  Aligned_cols=365  Identities=14%  Similarity=0.023  Sum_probs=272.2

Q ss_pred             HHhcCCHHHHHHHHHHHHccc---------C-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------CCChhHHH
Q 005808           46 LCSLRNWSKAIRILDSLLAQS---------Y-EIQDICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLLQAYI  107 (676)
Q Consensus        46 ~~~~~~y~~Ai~~y~~ai~~~---------~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~  107 (676)
                      ++..|+|++|+.+|.+|+++.         + ....|.|+|.+|..+|++++|+..+++++++.        +..+.++.
T Consensus        61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~  140 (472)
T 4g1t_A           61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC  140 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence            467999999999999998862         1 23448999999999999999999999999874        45677899


Q ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCC
Q 005808          108 LKGCAFSALG--RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM  185 (676)
Q Consensus       108 ~~g~~~~~l~--~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (676)
                      .+|.++...|  ++++|+.+|++|++++|+.+.....+..+.-....    .     ..                     
T Consensus       141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~----~-----~~---------------------  190 (472)
T 4g1t_A          141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN----W-----PP---------------------  190 (472)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH----S-----CC---------------------
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----c-----hH---------------------
Confidence            9998887764  69999999999999999887665433221111000    0     00                     


Q ss_pred             ccccccCCCCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCccc
Q 005808          186 SETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTH  265 (676)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (676)
                                                                         ..                           
T Consensus       191 ---------------------------------------------------~~---------------------------  192 (472)
T 4g1t_A          191 ---------------------------------------------------SQ---------------------------  192 (472)
T ss_dssp             ---------------------------------------------------CC---------------------------
T ss_pred             ---------------------------------------------------HH---------------------------
Confidence                                                               00                           


Q ss_pred             ccccchhhcccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhh
Q 005808          266 ASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESR  345 (676)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (676)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (472)
T 4g1t_A          193 --------------------------------------------------------------------------------  192 (472)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhHhhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005808          346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGR  421 (676)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l  421 (676)
                                         .....+.+....+|.++..+..+|..+..    .|++++|+.++++++..+|.++.++..+
T Consensus       193 -------------------~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l  253 (472)
T 4g1t_A          193 -------------------NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA  253 (472)
T ss_dssp             -------------------CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             -------------------HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence                               00002233344577778888877766654    4678899999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhcCCCC
Q 005808          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-------------------GESVEAIQDLSKALEFEPNS  482 (676)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~  482 (676)
                      |.++...|++++|+..+.++++.+|++..++..+|.+|...                   +.+++|+..+++++..+|.+
T Consensus       254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  333 (472)
T 4g1t_A          254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL  333 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence            99999999999999999999999999999999999988643                   34688999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  558 (676)
                      ..++..+|.++...|++++|+..|++++...|++..   ++..+|.+ ....|++++|+..|++++++.|++.....   
T Consensus       334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---  410 (472)
T 4g1t_A          334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---  410 (472)
T ss_dssp             CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---
T ss_pred             hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---
Confidence            999999999999999999999999999999887653   35556654 45789999999999999999998755332   


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808          559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (676)
Q Consensus       559 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (676)
                             ....+...+++++..+|.++.++..+|.++...|++++|+++|+++++..|.+|.+...+|.
T Consensus       411 -------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~  472 (472)
T 4g1t_A          411 -------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE  472 (472)
T ss_dssp             -------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred             -------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence                   23455677888999999999999999999999999999999999999999999988887763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.8e-29  Score=253.19  Aligned_cols=247  Identities=17%  Similarity=0.187  Sum_probs=138.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005808          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (676)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  467 (676)
                      .++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+..|++++..+|.+..++..+|.++...|++++
T Consensus        64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  143 (330)
T 3hym_B           64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ  143 (330)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence            33344444444444444444444444444444444444444 44444444444444444444444455555555555555


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Q 005808          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (676)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (676)
                      |+..+++++...|.+...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...
T Consensus       144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence            55555555555554444445555555555555555555555555555555555555555555555555555555555543


Q ss_pred             ---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808          548 ---------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       548 ---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (676)
                               |..+.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|+++++.+|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (330)
T 3hym_B          224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD  303 (330)
T ss_dssp             TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred             hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence                     44456666666666666666666666666666666666667777777777777777777777777777777


Q ss_pred             HHHHHHHHHHH-HHhccH
Q 005808          619 IECLYLRASCY-HAIGEY  635 (676)
Q Consensus       619 ~~~~~~la~~~-~~~g~~  635 (676)
                      +.++..++.++ ...|+.
T Consensus       304 ~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          304 TFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHHHTTTTC-
T ss_pred             hHHHHHHHHHHHHHhCch
Confidence            77777777666 344443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=4.3e-29  Score=256.94  Aligned_cols=269  Identities=16%  Similarity=0.172  Sum_probs=246.6

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  458 (676)
                      .+...++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHE----------RGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLA  526 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~  526 (676)
                      +...|++++|+..|++++...|.+...+..          +|.++...|++++|+..+++++...|.  ++.++..+|.+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            999999999999999999999876665554          499999999999999999999999999  89999999999


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (676)
                      +...|++++|+.+++++++..|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          607 DLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       607 ~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      .|+++++..|+            +..+|..++.++..+|+.+.|.....+.+.
T Consensus       303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            99999998876            357899999999999999988877766433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=6.6e-29  Score=255.72  Aligned_cols=277  Identities=22%  Similarity=0.254  Sum_probs=250.0

Q ss_pred             HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005808          390 AQVNEGKYASAIS-IFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (676)
Q Consensus       390 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  464 (676)
                      ++...|+|++|+. .|++++...|.++    ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            5566789999999 9999998888764    5689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 005808          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----------------YLGLALS  528 (676)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------~la~~~~  528 (676)
                      +++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            999999999999999999999999999999999999999999999999998876654                466666 


Q ss_pred             HcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (676)
                      ..|++++|+..+++++...|.  ++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999  899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc-----------HHHHHHHHHHHHHhh
Q 005808          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS-----------MEKFVLQCLAFYQVL  667 (676)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~~  667 (676)
                      .|+++++..|+++.++..+|.++...|++++|+.+|++++++.|++           ..+|..++.++....
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999998           888999998887654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1e-28  Score=254.36  Aligned_cols=267  Identities=19%  Similarity=0.228  Sum_probs=255.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ...++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILH----------------ERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTY  522 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~  522 (676)
                      ..|++++|+..+++++...|.+...+.                .++.++ ..|++++|+..+++++...|.  +..++..
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            999999999999999999998876654                466666 999999999999999999999  8999999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (676)
                      +|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|+++
T Consensus       223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  302 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  302 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          603 KAIKDLSSGLGIDPSN-----------IECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      +|+..|++++...|++           ..+|..+|.++..+|++++|..+++++++.
T Consensus       303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            9999999999998887           899999999999999999999999887764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=7e-29  Score=250.84  Aligned_cols=273  Identities=13%  Similarity=0.126  Sum_probs=257.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      .+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILHER--------------GI-VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                      ...|++++|+..+++++...|.+...+..+              +. ++...|++++|+..+++++...|.+..++..+|
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            999999999999999999999888777766              66 688999999999999999999999999999999


Q ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHH
Q 005808          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (676)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  604 (676)
                      .++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          605 IKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       605 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      +..|++++...|+            ++.++..+|.++..+|++++|...++++++..|+.
T Consensus       260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred             HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence            9999999999999            78999999999999999999999999988876654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=1e-28  Score=252.12  Aligned_cols=261  Identities=12%  Similarity=0.094  Sum_probs=165.7

Q ss_pred             hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCcHHHH
Q 005808          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      +..+|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            456666777777777777777777777777777777777777777777777777775 7777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG  531 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g  531 (676)
                      ..+|.++..+|++++|+..|++++.++|++..+|..+|.++...|++++|+..++++++++|++..+|+.+|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777666 34


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 005808          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLS  609 (676)
Q Consensus       532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~  609 (676)
                      ..++|+                             .+.++.+|++++.++|++..+|..+|.++...|  ++++|+..+.
T Consensus       250 ~~~eA~-----------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~  300 (382)
T 2h6f_A          250 YNDRAV-----------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL  300 (382)
T ss_dssp             SCSHHH-----------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred             cchHHH-----------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence            335552                             111134444444444444444444444444444  3445555554


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHhc--------c-HHHHHHHHHHH-HhhCCCcHHHHHHHHHHHH
Q 005808          610 SGLGIDPSNIECLYLRASCYHAIG--------E-YREAIKDYDAA-LDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~  664 (676)
                      ++ +.+|+++.++..+|.+|..+|        + +++|+.+|+++ ++++|.....|..++..+.
T Consensus       301 ~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          301 DL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             Hh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            44 445555555555555555542        1 35555555555 5555555555555544443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=2.3e-25  Score=238.47  Aligned_cols=267  Identities=13%  Similarity=0.002  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHH
Q 005808          381 VDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       381 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      +..++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|+++.+.  .++.++
T Consensus       147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  222 (490)
T 2xm6_A          147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQ  222 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHH
Confidence            4455566666665    66777777777777665  457777777777776    67777777777777664  456677


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                      ..+|.++..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|
T Consensus       223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg  298 (490)
T 2xm6_A          223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLA  298 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence            777777776    67777777777777665  356677777777776    67777777777777654  5566777777


Q ss_pred             HHHHHc-----ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808          525 LALSSI-----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (676)
Q Consensus       525 ~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (676)
                      .++...     +++++|+.+|+++.+.  .++.+++.+|.+|...|   ++++|+.+|+++.+.  .++.+++.+|.+|.
T Consensus       299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  374 (490)
T 2xm6_A          299 HLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL  374 (490)
T ss_dssp             HHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            777776     7777777777777765  34567777777777655   677777777777765  45677777777777


Q ss_pred             H----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCC---cHHHHHHHHH
Q 005808          597 G----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELD---SMEKFVLQCL  661 (676)
Q Consensus       597 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~  661 (676)
                      .    .+++++|+.+|+++++..  ++.+++.+|.+|..    .+++++|..+|+++++.+|+   ++.+...++.
T Consensus       375 ~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~  448 (490)
T 2xm6_A          375 QGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK  448 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence            7    677777777777777643  46777777777777    67777777777777777733   5555554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=5.6e-28  Score=246.57  Aligned_cols=234  Identities=16%  Similarity=0.142  Sum_probs=204.1

Q ss_pred             HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (676)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (676)
                      ......+..++..+|.+..+++.+|.++...|+ +++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++
T Consensus       114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal  193 (382)
T 2h6f_A          114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL  193 (382)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            344456677788999999999999999999997 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhCCCC
Q 005808          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAA-----VEDLSACVKLDKEN  516 (676)
Q Consensus       443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~al~~~~~~  516 (676)
                      .++|++..+|..+|.++...|++++|+.+|++++.++|++..+|..+|.++.. .|.+++|     +..+++++.++|++
T Consensus       194 ~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~  273 (382)
T 2h6f_A          194 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN  273 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999 5555777     58888888888888


Q ss_pred             HHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhcCcCc
Q 005808          517 KSAYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA--------N-SEKALECLQQV-LYIDKRF  584 (676)
Q Consensus       517 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~-~~~A~~~~~~a-l~~~~~~  584 (676)
                      ..+|+.++.++...|  ++++|+..+.++ +..|+++.++..+|.+|..+|        + +++|+.+|+++ ++.+|..
T Consensus       274 ~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r  352 (382)
T 2h6f_A          274 ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR  352 (382)
T ss_dssp             HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence            888888888888877  578888888777 777888888888888887764        2 47777777777 7777777


Q ss_pred             HHHHHHHHHHHHHc
Q 005808          585 SKAYHLRGLLLHGL  598 (676)
Q Consensus       585 ~~~~~~la~~~~~~  598 (676)
                      ...|..++..+...
T Consensus       353 ~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          353 KEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777665543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=5.2e-28  Score=248.86  Aligned_cols=265  Identities=19%  Similarity=0.201  Sum_probs=234.8

Q ss_pred             HHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          402 SIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (676)
Q Consensus       402 ~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (676)
                      ..+...+...+.+    ...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3444444444444    455999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHcccHHHHHHHHHHHHhcC
Q 005808          478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL----------GLALSSIGEYKKAEEAHLKAIQLD  547 (676)
Q Consensus       478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~  547 (676)
                      .+|.++.++..+|.++...|++++|+..+++++...|++...+..+          |.++...|++++|+.++++++...
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999998876655544          999999999999999999999999


Q ss_pred             cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005808          548 RN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (676)
Q Consensus       548 p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (676)
                      |.  ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++..|+++.++..+
T Consensus       208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  287 (365)
T 4eqf_A          208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL  287 (365)
T ss_dssp             CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            99  8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhhCCCc------------HHHHHHHHHHHHHh
Q 005808          626 ASCYHAIGEYREAIKDYDAALDLELDS------------MEKFVLQCLAFYQV  666 (676)
Q Consensus       626 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~  666 (676)
                      |.++..+|++++|+.+|++++++.|+.            ..+|..++.++..+
T Consensus       288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (365)
T 4eqf_A          288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM  340 (365)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence            999999999999999999999999884            45566676665443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.95  E-value=6.8e-24  Score=229.40  Aligned_cols=222  Identities=9%  Similarity=-0.011  Sum_probs=204.2

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Q 005808          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGESV-------EAIQDLSKALE-FEPNSADILHERGIVNFKF  496 (676)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  496 (676)
                      ..++..|++++..+|.++.+|..+|.++..       .|+++       +|+..|++++. ..|++..+|..++.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999999999999986       79987       99999999997 7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHcCCHHHHHHHH
Q 005808          497 KDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECL  574 (676)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~  574 (676)
                      |++++|...|++++...|.++ .+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|++++|..+|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999999999885 6999999999999999999999999999988877777766665 34689999999999


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      +++++..|+++.+|..++.++...|++++|...|++++...|.++    .+|...+......|+.+.+..+++++++..|
T Consensus       415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            999999999999999999999999999999999999999876554    4888888889999999999999999999999


Q ss_pred             CcH
Q 005808          651 DSM  653 (676)
Q Consensus       651 ~~~  653 (676)
                      ++.
T Consensus       495 ~~~  497 (530)
T 2ooe_A          495 EEY  497 (530)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            644

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=1.2e-25  Score=227.02  Aligned_cols=253  Identities=17%  Similarity=0.215  Sum_probs=238.3

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (676)
                      ...++.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808          495 KFKDFNAAVEDLSACVKLDKENKSAYTYL--------------GL-ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  559 (676)
                      ..|++++|+..+++++...|.+...+..+              +. ++...|++++|+..++++++..|.++.++..+|.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            99999999999999999999988777766              66 6889999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (676)
                      ++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCC------------cHHHHHHHHHHHHHhh
Q 005808          640 KDYDAALDLELD------------SMEKFVLQCLAFYQVL  667 (676)
Q Consensus       640 ~~~~~al~~~p~------------~~~~~~~~~~~~~~~~  667 (676)
                      .+|++++++.|+            +...+..++.++....
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence            999999999999            7888999988887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-25  Score=218.34  Aligned_cols=239  Identities=18%  Similarity=0.168  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILH  487 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  487 (676)
                      +.++..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|.+       +.++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3445555555555555555555555555555 455555555555555555555555555555554443       45666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (676)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  567 (676)
                      .+|.++...|++++|+..+++++...|.        +.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence            6666666666666666666666666655        35677778888888888888888888888889999999999999


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      ++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++
T Consensus       156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hC------CCcHHHHHHHHHH
Q 005808          648 LE------LDSMEKFVLQCLA  662 (676)
Q Consensus       648 ~~------p~~~~~~~~~~~~  662 (676)
                      ++      |++..++..+..+
T Consensus       236 ~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          236 KDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHTTTTHHHHHHHHHHT
T ss_pred             hChhhcCCCchHHHHHHHHHh
Confidence            98      8887776655543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=4.9e-23  Score=220.35  Aligned_cols=269  Identities=15%  Similarity=0.036  Sum_probs=243.5

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHH
Q 005808          381 VDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       381 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      +..++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .++.++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~  186 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            4566778888888    88999999999999875  579999999999998    88999999999999986  578999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                      ..+|.+|..    .+++++|+.+|+++.+.  .++.++..+|.+|..    .+++++|+.++++++..  .++.+++.+|
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg  262 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG  262 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence            999999999    89999999999999886  468899999999997    89999999999999875  6688999999


Q ss_pred             HHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q 005808          525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-----ANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (676)
Q Consensus       525 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (676)
                      .++..    .+++++|+.+|+++.+.  .++.+++.+|.+|...     +++++|+.+|+++.+.  .++.+++.+|.++
T Consensus       263 ~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y  338 (490)
T 2xm6_A          263 YILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIY  338 (490)
T ss_dssp             HHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence            99999    89999999999999875  5788999999999998     9999999999999876  4578999999999


Q ss_pred             HHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          596 HGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       596 ~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                      ...|   ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++..  ++.++..++.+|++
T Consensus       339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence            9877   899999999999987  578999999999999    899999999999999864  68889999998876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=3.5e-26  Score=224.59  Aligned_cols=247  Identities=16%  Similarity=0.150  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRG  456 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la  456 (676)
                      ++.++..|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            445566666666666666666666666666666666666666666666666666666666666 2222    23355566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 005808          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (676)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (676)
                      .++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|......+++++|
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666655555555555555555555555555555555555555555555555333333355555


Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---cC-----cHHHHHHHHHHHHHcCCHHHHH
Q 005808          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYID---KR-----FSKAYHLRGLLLHGLGQHKKAI  605 (676)
Q Consensus       537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~g~~~~A~  605 (676)
                      +..++++++..|++..++..+|.++...|+   +++|+..++++++..   |+     ...++..+|.++...|++++|+
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            555555555555555555555555555555   555555555555443   22     1134444444444444444444


Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHH
Q 005808          606 KDLSSGLGIDPSNIECLYLRASC  628 (676)
Q Consensus       606 ~~~~~al~~~p~~~~~~~~la~~  628 (676)
                      .+|+++++.+|+++.++-.++.+
T Consensus       242 ~~~~~al~~~p~~~~a~~~l~~~  264 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDGLKMK  264 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHC--
T ss_pred             HHHHHHHhcCccHHHHHHHhhhh
Confidence            44444444444444444444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=4e-26  Score=224.18  Aligned_cols=249  Identities=15%  Similarity=0.065  Sum_probs=226.8

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 005808          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHER  489 (676)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  489 (676)
                      +++.++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. .|.+    ..++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999 4433    4469999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Q 005808          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (676)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  569 (676)
                      |.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|.++.++..+|......+++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999944455679999


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCC---CC-----CHHHHHHHHHHHHHhccHHHH
Q 005808          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGID---PS-----NIECLYLRASCYHAIGEYREA  638 (676)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A  638 (676)
                      |+..++++++..|+++.++..+|.++...|+   +++|+..|+++++..   |+     ...++..+|.+|...|++++|
T Consensus       161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999   999999999999875   44     236899999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808          639 IKDYDAALDLELDSMEKFVLQCLAF  663 (676)
Q Consensus       639 ~~~~~~al~~~p~~~~~~~~~~~~~  663 (676)
                      +.+|+++++++|+++.++-.++...
T Consensus       241 ~~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          241 DAAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHC---
T ss_pred             HHHHHHHHhcCccHHHHHHHhhhhh
Confidence            9999999999999999877665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-25  Score=218.56  Aligned_cols=240  Identities=17%  Similarity=0.164  Sum_probs=229.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-------HHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW  452 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~  452 (676)
                      .++.++.+|.+++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|+.       ..++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            37889999999999999999999999999999 889999999999999999999999999999998876       7899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      ..+|.++...|++++|+.+|++++...|.        +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999986        4567778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      +++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC------CCCHHHHHHHHHH
Q 005808          613 GID------PSNIECLYLRASC  628 (676)
Q Consensus       613 ~~~------p~~~~~~~~la~~  628 (676)
                      +..      |++..++..++.+
T Consensus       235 ~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          235 TKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HhChhhcCCCchHHHHHHHHHh
Confidence            998      8888888877765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=2.6e-25  Score=219.63  Aligned_cols=261  Identities=13%  Similarity=0.018  Sum_probs=233.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808          388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (676)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  466 (676)
                      .+..+..|+|.+|+..++++...+|++ .++...+++++...|+++.|+..++.   .+|....++..++..+...++++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            456788999999999999887777776 46778899999999999999988765   25556778888999999999999


Q ss_pred             HHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          467 EAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (676)
Q Consensus       467 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (676)
                      +|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.+..++..+|.++..+|++++|+..+++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999875  699999999999999999999999999987     8899999999999999999999999999999


Q ss_pred             hcCcccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808          545 QLDRNFLEAWGHLT--QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (676)
Q Consensus       545 ~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (676)
                      +.+|++.......+  .++...|++++|+..|+++++..|+++.++..+|.++...|++++|...|++++..+|+++.++
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99998865444333  3344568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccHHH-HHHHHHHHHhhCCCcHHHH
Q 005808          623 YLRASCYHAIGEYRE-AIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       623 ~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~  656 (676)
                      .++|.++...|++.+ +..+++++++++|+++.+.
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            999999999999976 5789999999999998864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=1.4e-25  Score=211.90  Aligned_cols=200  Identities=20%  Similarity=0.176  Sum_probs=119.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005808          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (676)
Q Consensus       446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  525 (676)
                      |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHc-----------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 005808          526 ALSSI-----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (676)
Q Consensus       526 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (676)
                      ++...           |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            55555           777777777777777777777777777777777777777777777777766 667777777777


Q ss_pred             HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808          595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (676)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (676)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            7777777777777777777777777777777777777777777777766553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=2.3e-25  Score=210.34  Aligned_cols=199  Identities=20%  Similarity=0.215  Sum_probs=111.5

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      |.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34456666666666666666667666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          458 ARAAL-----------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       458 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      ++...           |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            66666           555555555555555555555555555555555555555555555555555 555555555555


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (676)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=4.5e-23  Score=222.99  Aligned_cols=276  Identities=13%  Similarity=0.045  Sum_probs=220.9

Q ss_pred             CCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH-------------HHcccHHH
Q 005808          378 SISVDFRLSRGIAQVN---------EGKYASAISIFDQILKEDPMYP--EALIGRGTAR-------------AFQRELEA  433 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~---------~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~-------------~~~g~~~~  433 (676)
                      +.+...|...+.....         .|+++.|+.+|+++++ .|...  ..|...+...             ...+++..
T Consensus       118 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~  196 (530)
T 2ooe_A          118 IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMN  196 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHH
Confidence            3445555555554443         7899999999999998 56543  2332222211             13467788


Q ss_pred             HHHHHHH------HHHh-----CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhcCCCCHHHHH
Q 005808          434 AISDFTE------AIQS-----NPSA-------GEAWKRRGQARAAL----GES----VEAIQDLSKALEFEPNSADILH  487 (676)
Q Consensus       434 A~~~~~~------al~~-----~~~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~  487 (676)
                      |...+..      .++.     .|..       ...|..........    ++.    ..++..|++++..+|.++.+|.
T Consensus       197 A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~  276 (530)
T 2ooe_A          197 ARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWY  276 (530)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            8777765      3332     2332       23444443332221    232    4788999999999999999999


Q ss_pred             HHHHHHHh-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH-
Q 005808          488 ERGIVNFK-------FKDFN-------AAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-  551 (676)
Q Consensus       488 ~la~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-  551 (676)
                      .+|..+..       .|+++       +|+..++++++ ..|++..+|..++.++...|++++|...|+++++..|.++ 
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  356 (530)
T 2ooe_A          277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT  356 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH
T ss_pred             HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch
Confidence            99999986       79977       99999999997 7999999999999999999999999999999999999885 


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (676)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (676)
                      .+|..++.++.+.|++++|...|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.+|..++.++.
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            6999999999999999999999999999988877777776666 446999999999999999999999999999999999


Q ss_pred             HhccHHHHHHHHHHHHhhCCCcHH
Q 005808          631 AIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      ..|+.++|...|++++...|.++.
T Consensus       437 ~~g~~~~Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          437 HLNEDNNTRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             TTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred             hCCCHhhHHHHHHHHHhccCCCHH
Confidence            999999999999999998776544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=5.4e-25  Score=229.50  Aligned_cols=290  Identities=18%  Similarity=0.170  Sum_probs=253.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCC
Q 005808          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS  447 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~  447 (676)
                      ......++.+|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34577889999999999999999999999999999984    67899999999999999999999999876      334


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCC--------------------HHH
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNA  501 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~  501 (676)
                      ...++..+|.++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            46789999999999999999999999999886543      4589999999999999                    999


Q ss_pred             HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHH
Q 005808          502 AVEDLSACVKL------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK  569 (676)
Q Consensus       502 A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~  569 (676)
                      |+..+.+++..      .+....++..+|.++...|++++|+.+++++++..+..      ..++..+|.++...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999999876      23335688999999999999999999999999886654      3489999999999999999


Q ss_pred             HHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHH
Q 005808          570 ALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYRE  637 (676)
Q Consensus       570 A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~  637 (676)
                      |+.++++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999876654      6788999999999999999999999999875443      5789999999999999999


Q ss_pred             HHHHHHHHHhhCCC------cHHHHHHHHHHHHHhh
Q 005808          638 AIKDYDAALDLELD------SMEKFVLQCLAFYQVL  667 (676)
Q Consensus       638 A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~  667 (676)
                      |+.+|++++++.+.      ...++..++.++....
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence            99999999998443      3556677777776554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.93  E-value=1.1e-24  Score=227.83  Aligned_cols=277  Identities=18%  Similarity=0.150  Sum_probs=247.0

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCc
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSA  448 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~  448 (676)
                      .....++.+|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3467788999999999999999999999999999986    58899999999999999999999999987      4666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD-----------------FNAAVED  505 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~  505 (676)
                      ..++..+|.++...|++++|+.++++++..      .|....++..+|.++...|+                 +++|+.+
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            789999999999999999999999999988      45556789999999999999                 9999999


Q ss_pred             HHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHH
Q 005808          506 LSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALEC  573 (676)
Q Consensus       506 ~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~  573 (676)
                      +++++...      +....++..+|.++...|++++|+.+++++++..+...      .++..+|.++...|++++|+.+
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99998763      23346889999999999999999999999999877543      3889999999999999999999


Q ss_pred             HHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHHHHHH
Q 005808          574 LQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKD  641 (676)
Q Consensus       574 ~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~  641 (676)
                      +++++...+..      ..++..+|.++...|++++|+.++++++...+.      ...++..+|.+|..+|++++|..+
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  365 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY  365 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            99999877643      678999999999999999999999999987443      246899999999999999999999


Q ss_pred             HHHHHhhCCCcHHH
Q 005808          642 YDAALDLELDSMEK  655 (676)
Q Consensus       642 ~~~al~~~p~~~~~  655 (676)
                      |++++++.+.....
T Consensus       366 ~~~al~~~~~~~~~  379 (411)
T 4a1s_A          366 AEQHLQLAXXXXXX  379 (411)
T ss_dssp             HHHHHHHCCHHHHH
T ss_pred             HHHHHHHHhhcccc
Confidence            99999998875543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.93  E-value=1.6e-24  Score=219.39  Aligned_cols=272  Identities=19%  Similarity=0.198  Sum_probs=237.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGE  450 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~  450 (676)
                      ...++..|..++..|++++|+..|+++++..|.+    ..++..+|.++...|++++|+.++++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            5678889999999999999999999999999998    467889999999999999999999999877      344577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005808          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAVE  504 (676)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~  504 (676)
                      ++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            89999999999999999999999999875533      3488999999999999                    999999


Q ss_pred             HHHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHH
Q 005808          505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE  572 (676)
Q Consensus       505 ~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~  572 (676)
                      .+++++...      +....++..+|.++...|++++|+.+++++++..+..      ..++..+|.++...|++++|+.
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999988762      3335688899999999999999999999999886543      3488999999999999999999


Q ss_pred             HHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHH
Q 005808          573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIK  640 (676)
Q Consensus       573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~  640 (676)
                      .+++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|..
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            999999876644      6788999999999999999999999998875432      4688999999999999999999


Q ss_pred             HHHHHHhhCCCc
Q 005808          641 DYDAALDLELDS  652 (676)
Q Consensus       641 ~~~~al~~~p~~  652 (676)
                      ++++++++.+..
T Consensus       325 ~~~~a~~~~~~~  336 (338)
T 3ro2_A          325 FAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.92  E-value=6.1e-23  Score=202.62  Aligned_cols=250  Identities=12%  Similarity=0.007  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQA  458 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~  458 (676)
                      .+..+.++++++..|+++.|+..++.   .+|....++..++..+...|++++|+..+++++..  +|+++.+++.+|.+
T Consensus        34 ~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~  110 (291)
T 3mkr_A           34 VERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI  110 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            45668889999999999999998865   25556778889999999999999999999999876  69999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcccHHHH
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALSSIGEYKKA  536 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la--~~~~~~g~~~~A  536 (676)
                      +...|++++|+..+++     |.++.++..+|.++...|++++|+..+++++..+|++.......+  .++...|++++|
T Consensus       111 ~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA  185 (291)
T 3mkr_A          111 YFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA  185 (291)
T ss_dssp             HHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHH
Confidence            9999999999999988     889999999999999999999999999999999999875544434  334456899999


Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC
Q 005808          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKDLSSGLGID  615 (676)
Q Consensus       537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~  615 (676)
                      +..|+++++..|+++.+++.+|.++...|++++|+..|++++..+|+++.++.++|.++...|++.+ +..+++++++.+
T Consensus       186 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999976 578999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005808          616 PSNIECLYLRASCYHAIGEYREAIKDY  642 (676)
Q Consensus       616 p~~~~~~~~la~~~~~~g~~~~A~~~~  642 (676)
                      |+++.+..    +..+.+.|+++..-|
T Consensus       266 P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          266 RSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             TTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             CCChHHHH----HHHHHHHHHHHHHHc
Confidence            99987653    456677777776655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.92  E-value=1.9e-23  Score=205.18  Aligned_cols=247  Identities=18%  Similarity=0.154  Sum_probs=216.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808          391 QVNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (676)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  466 (676)
                      ....|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            344588999999999999874    4567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 005808          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (676)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (676)
                      +|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|++.......+.+ ...|++++|+..+.+++..
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998766666544 6679999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (676)
                      .|.+...+. ++.++...++.++|+..+.+++...|.    ++.++..+|.++...|++++|+..|++++..+|++..  
T Consensus       174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--  250 (275)
T 1xnf_A          174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV--  250 (275)
T ss_dssp             SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH--
T ss_pred             CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH--
Confidence            888766554 777788889999999999999887664    3688999999999999999999999999999997744  


Q ss_pred             HHHHHHHHHhccHHHHHHHH
Q 005808          623 YLRASCYHAIGEYREAIKDY  642 (676)
Q Consensus       623 ~~la~~~~~~g~~~~A~~~~  642 (676)
                       ..+.++..+|++++|+..+
T Consensus       251 -~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 -EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -HHHHHHHHHHHHHHC----
T ss_pred             -HHHHHHHHHHHHHhhHHHH
Confidence             3477889999999999887

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.92  E-value=7e-23  Score=215.77  Aligned_cols=256  Identities=14%  Similarity=0.057  Sum_probs=215.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCcHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAIS----IFDQILKEDPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~----~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      .+..++.+|.++...+.++++..    +++.+...+   +.+++.+|.++...|   ++++|+.+|+++....|.....+
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~  216 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV  216 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence            37788999999999985555444    455444444   449999999999999   99999999999999999999999


Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005808          453 KRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIV-N--FKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (676)
Q Consensus       453 ~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  525 (676)
                      +.+|.+|...    +++++|+.+|+++.   |.++.+++.+|.+ +  ...+++++|+.+|+++...  .++.+++.+|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            9999999765    79999999999998   8899999999998 5  5789999999999999865  58999999999


Q ss_pred             HHHHcc-----cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808          526 ALSSIG-----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (676)
Q Consensus       526 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (676)
                      +|. .|     ++++|+.+|+++.   +.++.+++.+|.+|..    ..++++|+.+|+++.+  +.++.+.+.+|.+|.
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS  365 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence            998 56     9999999999998   8899999999999987    4499999999999986  456788999999998


Q ss_pred             H----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCC
Q 005808          597 G----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       597 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .    ..++.+|..+|+++.+..+  +.+...++.+..  ..++..+|....++..+..+.
T Consensus       366 ~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~  424 (452)
T 3e4b_A          366 QGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT  424 (452)
T ss_dssp             SCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence            5    5699999999999998765  455556665543  345677888888777665443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=2.3e-23  Score=200.47  Aligned_cols=221  Identities=22%  Similarity=0.211  Sum_probs=160.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  458 (676)
                      ..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                      +...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888887778888888888888888888


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q 005808          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (676)
Q Consensus       539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (676)
                      .+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..++.+....+
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            8888877777777777777777777777777777777777777777777776666554433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=217.84  Aligned_cols=199  Identities=20%  Similarity=0.235  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccc--------------------HHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRE--------------------LEAA  434 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A  434 (676)
                      +..+..+|.++...|++++|+..+++++...|..      ..++..+|.++...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            5678889999999999999999999999876543      4588889999999999                    8888


Q ss_pred             HHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHH
Q 005808          435 ISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAA  502 (676)
Q Consensus       435 ~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A  502 (676)
                      +.++.+++..      .|....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            8888887765      222344566667777777777777777766665543322      2555555555555666666


Q ss_pred             HHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHH
Q 005808          503 VEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKA  570 (676)
Q Consensus       503 ~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A  570 (676)
                      +..+++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            55555555544332      3344445555555555555555555544443221      33344444444444444444


Q ss_pred             HHHHHHHHh
Q 005808          571 LECLQQVLY  579 (676)
Q Consensus       571 ~~~~~~al~  579 (676)
                      +.+++++++
T Consensus       327 ~~~~~~al~  335 (406)
T 3sf4_A          327 MHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=2.8e-23  Score=199.91  Aligned_cols=215  Identities=19%  Similarity=0.159  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (676)
                      +..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  574 (676)
                      ..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005808          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (676)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (676)
                      ++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..++.+.
T Consensus       183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            5555555554555555555555555555555555555555555544444444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=5.7e-22  Score=194.63  Aligned_cols=234  Identities=17%  Similarity=0.157  Sum_probs=176.0

Q ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 005808          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADIL  486 (676)
Q Consensus       411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  486 (676)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |++..++..+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            355667777777777777777777777777766  5666777777777777    777777777777777664  66777


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808          487 HERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (676)
Q Consensus       487 ~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  558 (676)
                      ..+|.++..    .+++++|+.++++++..  +++.++..+|.++..    .+++++|+.+|+++++..  ++.++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            777777777    77777777777777766  367777777777777    777888888888777764  566777788


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808          559 QFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (676)
Q Consensus       559 ~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (676)
                      .+|..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++++..|  +.+++.+|.+|.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            88877    788888888888887663  46778888888888    8888888888888887755  778888888888


Q ss_pred             H----hccHHHHHHHHHHHHhhCCCcHHHH
Q 005808          631 A----IGEYREAIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       631 ~----~g~~~~A~~~~~~al~~~p~~~~~~  656 (676)
                      .    .+++++|+.+|+++++..|++...+
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            8    8888888888888888888765543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.91  E-value=2.4e-22  Score=194.74  Aligned_cols=213  Identities=19%  Similarity=0.088  Sum_probs=186.0

Q ss_pred             CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005808          445 NPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (676)
Q Consensus       445 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  523 (676)
                      +|.. +.++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            4444 667788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q 005808          524 GLALSSIGEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (676)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (676)
                      |.++...|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence            8888888888888888888888  77888888889999999999999999999999999998889999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      ++|+..++++++..|++..++..++.++...|++++|..+++++++..|+++....
T Consensus       192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            99999999999999998999999999999999999999999999999999887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=5.2e-22  Score=188.39  Aligned_cols=213  Identities=13%  Similarity=-0.033  Sum_probs=160.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                      .|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45556666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHc-ccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q 005808          525 LALSSI-GEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (676)
Q Consensus       525 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (676)
                      .++... |++++|+..++++++  ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            777777 777777777777777  55666777777777777778888888888888777777777788888888888888


Q ss_pred             HHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          602 KKAIKDLSSGLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       602 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      ++|+..+++++...| .++..+..++.++...|++++|..+++.+.+.+|+++....
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            888888888888777 77777777777888888888888888888878888777644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=1.8e-22  Score=185.35  Aligned_cols=174  Identities=25%  Similarity=0.320  Sum_probs=149.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 005808          481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (676)
Q Consensus       481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  560 (676)
                      +++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005808          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK  640 (676)
Q Consensus       561 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  640 (676)
                      +...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCCCcHH
Q 005808          641 DYDAALDLELDSME  654 (676)
Q Consensus       641 ~~~~al~~~p~~~~  654 (676)
                      +|+++++++|+++.
T Consensus       163 ~~~~al~~~p~~a~  176 (184)
T 3vtx_A          163 YFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHTTHHHHH
T ss_pred             HHHHHHhCCccCHH
Confidence            88888888887643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=1.9e-21  Score=190.83  Aligned_cols=234  Identities=18%  Similarity=0.164  Sum_probs=216.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      .|.++..++.+|..+...|++++|+.+|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            456789999999999999999999999999998  7889999999999999    999999999999999885  78999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808          453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (676)
Q Consensus       453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (676)
                      ..+|.++..    .+++++|+.+|++++..+  ++.++..+|.+|..    .+++++|+.+++++++..  +..++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            999999999    999999999999999874  88999999999999    999999999999999875  688999999


Q ss_pred             HHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808          525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (676)
Q Consensus       525 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (676)
                      .++..    .+++++|+.+|+++++.  .++.++..+|.+|..    .+++++|+.+|+++++..|  +.++..+|.++.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            99999    99999999999999987  457899999999999    9999999999999998866  789999999999


Q ss_pred             H----cCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808          597 G----LGQHKKAIKDLSSGLGIDPSNIECL  622 (676)
Q Consensus       597 ~----~g~~~~A~~~~~~al~~~p~~~~~~  622 (676)
                      .    .+++++|+.+|+++++..|++...+
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9    9999999999999999988755443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=9.4e-22  Score=190.47  Aligned_cols=209  Identities=16%  Similarity=0.105  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          461 ALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                      ..|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999988  7777888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHH
Q 005808          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (676)
Q Consensus       539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  589 (676)
                      .++++++..|.+...+..++.++...|++++|..+++++++..|+++.+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            888888888888888888888888888888888888888888887776554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.90  E-value=1.8e-21  Score=184.60  Aligned_cols=212  Identities=17%  Similarity=0.108  Sum_probs=127.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  456 (676)
                      .|.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34445566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808          457 QARAAL-GESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (676)
Q Consensus       457 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (676)
                      .++... |++++|+..+++++.  ..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            666666 666666666666665  34444555555666666666666666666666655555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH
Q 005808          534 KKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY  588 (676)
Q Consensus       534 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  588 (676)
                      ++|+..+++++...| .+...+..++.++...|+++.|..+++.+....|+++.+.
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            555555555555555 5555555555555555555555555555555555554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.90  E-value=8e-22  Score=180.97  Aligned_cols=172  Identities=22%  Similarity=0.288  Sum_probs=125.1

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      ++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (676)
                      ...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhcCcccH
Q 005808          540 HLKAIQLDRNFL  551 (676)
Q Consensus       540 ~~~al~~~p~~~  551 (676)
                      |+++++.+|+++
T Consensus       164 ~~~al~~~p~~a  175 (184)
T 3vtx_A          164 FKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHTTHHHH
T ss_pred             HHHHHhCCccCH
Confidence            777777766653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=2.1e-22  Score=213.46  Aligned_cols=212  Identities=20%  Similarity=0.194  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (676)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (676)
                      +++++..+.......|.+..+++.+|.++...|++ ++|+.+|+++++.+|.++.++..+|.+|...|++++|+..|+++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444444444444444444555555555555555 55555555555555555555555555555555555555555555


Q ss_pred             HHhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--------CCHHHHHH
Q 005808          510 VKLDKENKSAYTYLGLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALE  572 (676)
Q Consensus       510 l~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~  572 (676)
                      ++.+|+ ..++..+|.++...         |++++|+..|+++++.+|+++.+|..+|.+|...        |++++|+.
T Consensus       164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            555544 34445555555555         5555555555555555555555555555555555        55666666


Q ss_pred             HHHHHHhcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808          573 CLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD  643 (676)
Q Consensus       573 ~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  643 (676)
                      .|++++..+|   .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++..+|++++|+..+.
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6666666666   5566666666666666666666666666666666666666666666666666666655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=3.4e-22  Score=211.84  Aligned_cols=216  Identities=19%  Similarity=0.197  Sum_probs=208.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL-EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS  473 (676)
Q Consensus       395 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  473 (676)
                      +.+++++..+..+....|.++.+++.+|.++...|++ ++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4578888899998899999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------ccHHHH
Q 005808          474 KALEFEPNSADILHERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKA  536 (676)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A  536 (676)
                      +++..+|+ ..++..+|.++...         |++++|+..++++++.+|++..+|..+|.++...        |++++|
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            99999998 79999999999999         9999999999999999999999999999999999        999999


Q ss_pred             HHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808          537 EEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (676)
Q Consensus       537 ~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (676)
                      +.+|+++++++|   .++.++..+|.+|...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus       241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999   999999999999999999999999999999999999999999999999999999999876554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.90  E-value=7e-22  Score=197.52  Aligned_cols=250  Identities=9%  Similarity=-0.027  Sum_probs=192.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cccH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 005808          398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QREL-------EAAISDFTEAIQ-SNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~  462 (676)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            688889999999999999999999888764       4664       788888888888 6888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Q 005808          463 GESVEAIQDLSKALEFEPNSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAH  540 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  540 (676)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888888888887776 788888888888888888888888888888777777666555433 68888888888


Q ss_pred             HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      +++++..|+++.+|..++.++...|++++|..+|++++..   .| ....+|..++..+...|+++.|..+++++++..|
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            8888888888888888888888888888888888888874   44 3567788888888888888888888888888887


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      ++...... +.+           ....+.+.++|+++.....+
T Consensus       273 ~~~~~~~~-~~~-----------~~r~~~l~~~P~~~~~ln~l  303 (308)
T 2ond_A          273 EEYEGKET-ALL-----------VDRYKFMDLYPCSASELKAL  303 (308)
T ss_dssp             TTTSSCHH-HHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred             cccccchH-HHH-----------HHHHHhcccCCCCHHHHHhc
Confidence            75432211 111           11125666788887765433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.89  E-value=8.4e-22  Score=193.45  Aligned_cols=234  Identities=19%  Similarity=0.165  Sum_probs=211.4

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005808          421 RGTARAFQRELEAAISDFTEAIQSN----PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (676)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (676)
                      ++......|++++|+..|+++++..    |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   90 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence            3344456789999999999999974    456789999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (676)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  576 (676)
                      |++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++..|++.......+.. ...|++++|+..+.+
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998776666544 667999999999999


Q ss_pred             HHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ++...|.+...+. ++.++...++.++|+..+++++...|..    +.++..+|.++...|++++|+.+|+++++++|++
T Consensus       170 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          170 HFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence            9999888766554 7778888999999999999999987743    6899999999999999999999999999999987


Q ss_pred             HHHH
Q 005808          653 MEKF  656 (676)
Q Consensus       653 ~~~~  656 (676)
                      ...+
T Consensus       249 ~~~~  252 (275)
T 1xnf_A          249 FVEH  252 (275)
T ss_dssp             CHHH
T ss_pred             HHHH
Confidence            6544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.89  E-value=1.2e-21  Score=206.36  Aligned_cols=256  Identities=11%  Similarity=0.007  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcccH----HHHHHHHHHHHHhCCCcHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASA---ISIFDQILKEDPMYPEALIGRGTARAFQREL----EAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A---~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      +.+++.+|.+|...+...++   ...+.++..  +.++.+++.+|.++...+.+    +.+..++..+...+|.   +++
T Consensus       106 ~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~  180 (452)
T 3e4b_A          106 GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYV  180 (452)
T ss_dssp             SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHH
Confidence            45899999999987765554   444444433  34578999999999998844    4455555555554444   899


Q ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          454 RRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       454 ~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      .+|.+|...|   ++++|+.+|+++....|.....++.+|.+|...    +++++|+.+|+++.   |+++.+++.+|.+
T Consensus       181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          181 ELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            9999999999   999999999999999999999999999999776    79999999999987   8999999999999


Q ss_pred             -H--HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-
Q 005808          527 -L--SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-  597 (676)
Q Consensus       527 -~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-  597 (676)
                       +  ...+++++|+.+|+++.+.  .++.+++.+|.+|. .|     ++++|+.+|+++.   +.++.+++.+|.+|.. 
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G  331 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRG  331 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC
Confidence             4  5689999999999999865  58999999999998 56     9999999999998   8899999999999987 


Q ss_pred             ---cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCCc
Q 005808          598 ---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       598 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~  652 (676)
                         ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++.+|..+|+++.+..+..
T Consensus       332 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~  391 (452)
T 3e4b_A          332 YLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE  391 (452)
T ss_dssp             TTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred             CCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence               45999999999999874  457889999999985    458999999999999976543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=5.4e-21  Score=191.03  Aligned_cols=223  Identities=10%  Similarity=-0.003  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Q 005808          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGES-------VEAIQDLSKALE-FEPNSADILHERGIVNFKF  496 (676)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  496 (676)
                      ++|+..|++++..+|.++.+|+.+|.++..       .|++       ++|+..|++++. +.|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999999874       5886       999999999999 7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHH
Q 005808          497 KDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECL  574 (676)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~  574 (676)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999886 999999999999999999999999999999988888777766543 79999999999


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      +++++..|+++.+|..+|.++...|++++|+..|++++..   .| +...+|..++..+...|++++|...++++++..|
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999995   55 3788999999999999999999999999999999


Q ss_pred             CcHH
Q 005808          651 DSME  654 (676)
Q Consensus       651 ~~~~  654 (676)
                      ++..
T Consensus       273 ~~~~  276 (308)
T 2ond_A          273 EEYE  276 (308)
T ss_dssp             TTTS
T ss_pred             cccc
Confidence            8654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=2.2e-20  Score=177.81  Aligned_cols=216  Identities=17%  Similarity=0.129  Sum_probs=123.8

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (676)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (676)
                      .++.+++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|.++.++..+|.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            3455566666666666666666666666666655 555555555555555555555555555555555555555555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (676)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  571 (676)
                      ++...|++++|+..++++++..|+++..+..++                           .++..+|.++...|++++|+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~~~~~g~~~~~~~~~~~A~  137 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA---------------------------IYYLKEGQKFQQAGNIEKAE  137 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH---------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH---------------------------HHHHHHhHHHHHhccHHHHH
Confidence            555555555555555555555555552211111                           34555555556666666666


Q ss_pred             HHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          572 ECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       572 ~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      ..|+++++.+|+  ++.++..+|.++...|     ...++++..+.+.+...+  .+......+.+++|+.+|+++++++
T Consensus       138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          138 ENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            666666666666  5566666666664433     334455555554443322  3334455667777777777777777


Q ss_pred             CCcHHHHHHHHHH
Q 005808          650 LDSMEKFVLQCLA  662 (676)
Q Consensus       650 p~~~~~~~~~~~~  662 (676)
                      |++..+...++.+
T Consensus       211 p~~~~~~~~l~~i  223 (228)
T 4i17_A          211 PNRTEIKQMQDQV  223 (228)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            7777766555444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=1.3e-20  Score=179.44  Aligned_cols=211  Identities=17%  Similarity=0.182  Sum_probs=164.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      .+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            356679999999999999999999999999999999 8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLA  526 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~  526 (676)
                      |.++...|++++|+..+++++..+|+++       .++..+|.++...|++++|+..++++++.+|+  +..++..+|.+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            9999999999999999999999999998       45777777777777777777777777777777  66777777777


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (676)
                      +...|+     ..+.++..+.+.....+  .+......+.+++|+.+++++++.+|+++.+...++.+
T Consensus       163 ~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          163 FYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            765443     33455555544443322  22223334445555555555555555555555544444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.88  E-value=7e-22  Score=206.48  Aligned_cols=254  Identities=20%  Similarity=0.154  Sum_probs=223.0

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC
Q 005808          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEF------EPNS  482 (676)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~  482 (676)
                      .....+..+|..+...|++++|+..|+++++..|++.    .++..+|.++...|++++|+.++++++..      .|..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3356678899999999999999999999999999986    58899999999999999999999999987      4556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccc-----------------HHHHHHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKSAYTYLGLALSSIGE-----------------YKKAEEA  539 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~  539 (676)
                      ..++..+|.++...|++++|+..+++++..      .+....++..+|.++...|+                 +++|+.+
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            779999999999999999999999999988      45556789999999999999                 9999999


Q ss_pred             HHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH------HHHHHHHHHHHHcCCHHHHHHH
Q 005808          540 HLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKD  607 (676)
Q Consensus       540 ~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~  607 (676)
                      +++++.+.      +....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.+
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99998864      33467899999999999999999999999998876433      3889999999999999999999


Q ss_pred             HHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHh
Q 005808          608 LSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDS------MEKFVLQCLAFYQV  666 (676)
Q Consensus       608 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~  666 (676)
                      |++++...+..      ..++..+|.++...|++++|+.++++++++.+..      ..++..++.++...
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  356 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI  356 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence            99999876643      6789999999999999999999999999986553      33666677766554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.87  E-value=5e-21  Score=193.51  Aligned_cols=252  Identities=19%  Similarity=0.160  Sum_probs=218.1

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSAD  484 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  484 (676)
                      ...++..|..+...|++++|+..|+++++..|.+    ..++..+|.++...|++++|+.++++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            4567888999999999999999999999999998    467889999999999999999999999876      344467


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccc--------------------HHHHHH
Q 005808          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--------------------YKKAEE  538 (676)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~  538 (676)
                      ++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            89999999999999999999999999875543      3488899999999999                    999999


Q ss_pred             HHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHH
Q 005808          539 AHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK  606 (676)
Q Consensus       539 ~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~  606 (676)
                      ++++++..      .+....++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999876      33446789999999999999999999999999875532      3489999999999999999999


Q ss_pred             HHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHh
Q 005808          607 DLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDS------MEKFVLQCLAFYQV  666 (676)
Q Consensus       607 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~  666 (676)
                      ++++++...+..      ..++..+|.++...|++++|..++++++++.|..      ..++..++.++...
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  316 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  316 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            999999876554      6788999999999999999999999999986654      33566666666554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=195.24  Aligned_cols=252  Identities=14%  Similarity=0.082  Sum_probs=153.8

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-
Q 005808          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-  445 (676)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  445 (676)
                      ...|..+..++.+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++... 
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            346777888888888888888888888888888874        55556778888888888888888888888887662 


Q ss_pred             -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808          446 -------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (676)
Q Consensus       446 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (676)
                             |....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   3345566667777777777777777777666552        2334455555666666666666666666555


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808          511 KL--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (676)
Q Consensus       511 ~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  582 (676)
                      ..        .|....++..+|.++...|++++|+.+++++++..|....            +             ...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~-------------~~~~  235 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF------------G-------------SVDD  235 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH------------C-----------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC------------C-------------CCCc
Confidence            54        3333344555555555555555555555555543322100            0             0001


Q ss_pred             C------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          583 R------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       583 ~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .      ....+...+..+...+.+.+|...+..+....|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            1      12233444455555666777777888888888888888888888888889999999998888888765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.86  E-value=2.4e-20  Score=192.79  Aligned_cols=234  Identities=15%  Similarity=0.085  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------H
Q 005808          417 ALIGRGTARAFQRELEAAISDFTEAIQS---NPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A  483 (676)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~  483 (676)
                      .++.+|.++...|++++|+.+|++++..   .++   ...++..+|.++...|++++|+.++.+++...+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3455999999999999999999999987   233   45789999999999999999999999999874432       4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh-----cC-cccH
Q 005808          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LD-RNFL  551 (676)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~  551 (676)
                      .++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.+++++++     .+ |...
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            588999999999999999999999999875433      25889999999999999999999999999     46 7789


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHH
Q 005808          552 EAWGHLTQFYQDLANSEKALECLQQVLYID-----KRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      .++..+|.++...|++++|+.++++++...     |.....+..+|.++...|+   +.+|+..+++. ...|....++.
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~  343 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence            999999999999999999999999999874     3333446779999999999   88899988887 44455567899


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          624 LRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      .+|.+|...|++++|..+|++++++...
T Consensus       344 ~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=6.2e-21  Score=209.66  Aligned_cols=173  Identities=17%  Similarity=0.264  Sum_probs=98.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808          479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (676)
Q Consensus       479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  558 (676)
                      .|++++++.++|.++...|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..++.++|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH
Q 005808          559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (676)
Q Consensus       559 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (676)
                      .++..+|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhhCCC
Q 005808          639 IKDYDAALDLELD  651 (676)
Q Consensus       639 ~~~~~~al~~~p~  651 (676)
                      .+.+++++++.|+
T Consensus       165 ~~~~~kal~l~~~  177 (723)
T 4gyw_A          165 DERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChh
Confidence            5555555555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=4.2e-18  Score=189.77  Aligned_cols=258  Identities=16%  Similarity=0.138  Sum_probs=210.1

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  458 (676)
                      ..+..|+.+|.++...|++++|+..|.++     +++..+..+|.++...|++++|+++|..+.+..++. .+...+|.+
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~Lafa 1176 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFA 1176 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHH
Confidence            44889999999999999999999999875     778999999999999999999999999999877442 223358888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                      |.+++++++ ++.|.    ..+ +...+..+|..+...|+|++|+.+|.++        ..|..++.++..+|++++|++
T Consensus      1177 YAKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1177 LAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             HHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence            988888885 44442    233 4466678999999999999999999985        478889999999999999999


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (676)
                      .++++     .+..+|...+.++...|++..|..+... +..+   ++.+..++..|...|.+++|+.+++.++.+++.+
T Consensus      1243 aarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1243 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             HHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence            99988     4568899999999999999999887764 3333   4556688888999999999999999999999888


Q ss_pred             HHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHH
Q 005808          619 IECLYLRASCYH--AIGEYREAIKDYDAALDLEL-----DSMEKFVLQCLAFYQ  665 (676)
Q Consensus       619 ~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~  665 (676)
                      ...+..+|.+|.  +.++..++++.|...+.+.|     ++...|..+...|.+
T Consensus      1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A         1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence            888877777775  45678888888888888777     666777776666653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=3.8e-21  Score=192.40  Aligned_cols=206  Identities=13%  Similarity=0.072  Sum_probs=147.0

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--
Q 005808          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--  445 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  445 (676)
                      ..+.....+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++...  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            46777889999999999999999999999999986        35557889999999999999999999999999874  


Q ss_pred             ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808          446 ------PSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (676)
Q Consensus       446 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (676)
                            |....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..+++++.
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  555778999999999999999999999999988        566677899999999999999999999999997


Q ss_pred             hCCC---------CHHHH------HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          512 LDKE---------NKSAY------TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (676)
Q Consensus       512 ~~~~---------~~~~~------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  576 (676)
                      ..+.         ....+      ...+..+...+.+.++...+.++....|....++..+|.+|...|++++|+.++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  303 (311)
T 3nf1_A          224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA  303 (311)
T ss_dssp             HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6432         11111      12222222333333444444444444444445555555555555555555555555


Q ss_pred             HHhcC
Q 005808          577 VLYID  581 (676)
Q Consensus       577 al~~~  581 (676)
                      ++++.
T Consensus       304 al~l~  308 (311)
T 3nf1_A          304 AMRSR  308 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=5e-18  Score=189.20  Aligned_cols=260  Identities=13%  Similarity=0.110  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +..++..|.++...|+|++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|.    ..+ +...+..+|..+.
T Consensus      1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~le 1206 (1630)
T 1xi4_A         1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCY 1206 (1630)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHH
Confidence            455666889999999999999999999987754 3334458999999999885 44442    233 4456668999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (676)
                      ..|+|++|+.+|.++        ..|..++.++.+.|++++|++.++++     .+..+|...+.++...|++..|..+.
T Consensus      1207 ~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A         1207 DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred             hcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            999999999999985        47889999999999999999999988     56789999999999999999999988


Q ss_pred             HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCC--
Q 005808          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDP--  616 (676)
Q Consensus       541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p--  616 (676)
                      .. +..+   +..+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+  -++..++++.|...+.+.|  
T Consensus      1274 l~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A         1274 LH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred             Hh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence            74 4334   44555888999999999999999999999999999999888888776  4577888889988888777  


Q ss_pred             ---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh------------CCCcHHHHHHHHHHHH
Q 005808          617 ---SNIECLYLRASCYHAIGEYREAIKDYDAALDL------------ELDSMEKFVLQCLAFY  664 (676)
Q Consensus       617 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~~~~~~~  664 (676)
                         .+...|..+..+|.+-|+++.|+...-.....            .+.+++.++....-|.
T Consensus      1350 r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A         1350 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH
Confidence               67889999999999999999999544443322            5677777665544443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.85  E-value=2.8e-20  Score=204.50  Aligned_cols=175  Identities=18%  Similarity=0.256  Sum_probs=156.3

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      ..|.+++++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  535 (676)
                      |.++..+|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|++..++..+|.++...|++++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCccc
Q 005808          536 AEEAHLKAIQLDRNF  550 (676)
Q Consensus       536 A~~~~~~al~~~p~~  550 (676)
                      |++.+++++++.|+.
T Consensus       164 A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          164 YDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChhH
Confidence            999999888876553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.85  E-value=6.2e-19  Score=172.34  Aligned_cols=243  Identities=14%  Similarity=0.046  Sum_probs=163.6

Q ss_pred             HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHc
Q 005808          390 AQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AAL  462 (676)
Q Consensus       390 ~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~  462 (676)
                      .....|.+ ++|+..+.+++..+|++..+|..++.++...|  ++++++..+..++..+|++..+|...+.++    ...
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence            33445555 68999999999999999999999999999998  899999999999999999988888888888    666


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          463 ---GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       463 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                         +++++++..+.+++..+|.+..+|...+.+....|.++  +++..+.+++..+|.+..+|...+.+....+...   
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~---  197 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA---  197 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC---
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---
Confidence               67778888888888888888888877777777777777  7777777777777777777777777776666500   


Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC-
Q 005808          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKDLSSGLGID-  615 (676)
Q Consensus       538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~-  615 (676)
                                               ....++++++++.+++..+|.+..+|..++.++...|+... ...++.+++..+ 
T Consensus       198 -------------------------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  252 (306)
T 3dra_A          198 -------------------------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK  252 (306)
T ss_dssp             -------------------------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred             -------------------------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence                                     00014444445555555555555555555555444444322 223444444433 


Q ss_pred             --CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hCCCcHHHHHHHH
Q 005808          616 --PSNIECLYLRASCYHAIGEYREAIKDYDAALD-LELDSMEKFVLQC  660 (676)
Q Consensus       616 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~  660 (676)
                        |.++.++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+
T Consensus       253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence              55555555666666555666666666666554 4665555554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.85  E-value=6e-19  Score=172.44  Aligned_cols=200  Identities=12%  Similarity=0.026  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---ccHHHH
Q 005808          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLAL----SSI---GEYKKA  536 (676)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---g~~~~A  536 (676)
                      ++|+..+.+++.++|++..+|...+.++...|  ++++++..+..++..+|++..+|...+.++    ...   ++++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            35555555555555555555555555555555  666666666666666666666666666665    444   566677


Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC------HHHHHHHH
Q 005808          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE--KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ------HKKAIKDL  608 (676)
Q Consensus       537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~  608 (676)
                      +..+.++++.+|.+..+|...+.++...|.++  ++++.++++++.+|.+..+|...+.++...+.      ++++++++
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~  209 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV  209 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            77777777777777777777777777777766  77788888888888888888888887777776      89999999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHhhC---CCcHHHHHHHHHHHHH
Q 005808          609 SSGLGIDPSNIECLYLRASCYHAIGEYRE-AIKDYDAALDLE---LDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~~~~  665 (676)
                      ++++..+|++..+|..++.++...|+... ...+..++++++   |.++.++..++.++.+
T Consensus       210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~  270 (306)
T 3dra_A          210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ  270 (306)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence            99999999999999999999999998555 556788888776   8899998888888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.84  E-value=5.6e-20  Score=190.04  Aligned_cols=234  Identities=14%  Similarity=0.135  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-------
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE---DPM---YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-------  447 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------  447 (676)
                      ...++.+|..+...|++++|+..|++++..   .++   .+.++..+|.++...|++++|+.++.+++.+.+.       
T Consensus       103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            345667999999999999999999999986   233   4688999999999999999999999999987443       


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CC
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVK-----LD-KE  515 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-~~  515 (676)
                      ...++..+|.++...|++++|+.+|++++...+..      ..++..+|.+|...|++++|+.++++++.     .+ |.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            24588999999999999999999999999875433      24899999999999999999999999999     45 77


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcCcHHH
Q 005808          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKA  587 (676)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~  587 (676)
                      ...++..+|.++...|++++|+.++++++...     |.....+..+|.++...|+   +.+|+..+++. ...|....+
T Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~  341 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDF  341 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHH
Confidence            78899999999999999999999999999884     3344456789999999999   88888888776 344455678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808          588 YHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (676)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (676)
                      +..+|.++...|++++|..+|+++++..
T Consensus       342 ~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          342 AIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999999998754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.84  E-value=2.6e-19  Score=174.29  Aligned_cols=84  Identities=13%  Similarity=-0.003  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCH-
Q 005808          554 WGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNI-  619 (676)
Q Consensus       554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~-  619 (676)
                      ++.+|.+|...|++++|+..|+++++..|+   .+.+++.+|.++...          |++++|+..|+++++..|+++ 
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            445555555555555555555555555554   334555555555544          555555555555555555553 


Q ss_pred             --HHHHHHHHHHHHhccHHH
Q 005808          620 --ECLYLRASCYHAIGEYRE  637 (676)
Q Consensus       620 --~~~~~la~~~~~~g~~~~  637 (676)
                        .+...++.++..++++++
T Consensus       231 ~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          231 LRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence              334444445554444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=2.3e-19  Score=177.54  Aligned_cols=244  Identities=13%  Similarity=0.032  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--c-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          399 SAISIFDQILKEDPMYPEALIGRGTARAFQ--R-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA  475 (676)
Q Consensus       399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (676)
                      +|..++.++-+.-+.....+     .++..  + ++++|+..|.++              |.++...|++++|+..|.++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence            35566666666555421111     11122  2 477888887776              55677788888888888888


Q ss_pred             HhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-ccHHHHHHHHHH
Q 005808          476 LEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSI-GEYKKAEEAHLK  542 (676)
Q Consensus       476 l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~  542 (676)
                      +.+.+.      ...++..+|.+|...|++++|+.++++++.+.|..      ..++..+|.++... |++++|+.+|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            876421      14578888888888888888888888888876543      45788899999996 999999999999


Q ss_pred             HHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH-------HHHHHHHHHHHcCCHHHHHHHHH
Q 005808          543 AIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK-------AYHLRGLLLHGLGQHKKAIKDLS  609 (676)
Q Consensus       543 al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~  609 (676)
                      ++++.|..      ..++..+|.++..+|++++|+.+|++++...|.+..       ++..+|.++...|++++|+..|+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  223 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99987754      567889999999999999999999999998876543       67889999999999999999999


Q ss_pred             HhhcCCCCCHHH-----HHHHHHHHH--HhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808          610 SGLGIDPSNIEC-----LYLRASCYH--AIGEYREAIKDYDAALDLELDSMEKFVLQCL  661 (676)
Q Consensus       610 ~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  661 (676)
                      ++++++|+....     +..++..+.  ..+++++|+..|++++.++|.....+..+-.
T Consensus       224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~  282 (292)
T 1qqe_A          224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE  282 (292)
T ss_dssp             GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence            999999886543     444555554  4577999999999999999987665544433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.83  E-value=2.5e-19  Score=174.36  Aligned_cols=213  Identities=15%  Similarity=0.055  Sum_probs=160.8

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---H
Q 005808          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---G  449 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~  449 (676)
                      ..+.++..++.+|..++..|+|++|+..|+++++.+|.+   +.+++.+|.+++..|++++|+..|++++...|++   .
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            467778999999999999999999999999999999988   8899999999999999999999999999998754   6


Q ss_pred             HHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808          450 EAWKRRGQARAA--------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (676)
Q Consensus       450 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (676)
                      .+++.+|.++..        .|++++|+..|++++..+|+++.+...+..+....+.                 ....++
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~  152 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQY  152 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHH
Confidence            788999999999        9999999999999999999876555333222111111                 122356


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCcCcH---
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDRN---FLEAWGHLTQFYQDL----------ANSEKALECLQQVLYIDKRFS---  585 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~~~~~---  585 (676)
                      .+|.++...|++++|+..|+++++..|+   .+.++..+|.+|...          |++++|+..|+++++..|+++   
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            6677777777777777777777777666   456677777777655          677777777777777777663   


Q ss_pred             HHHHHHHHHHHHcCCHHHHH
Q 005808          586 KAYHLRGLLLHGLGQHKKAI  605 (676)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~  605 (676)
                      .+...++.++...++++++.
T Consensus       233 ~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          233 TAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            44555666666666665443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.82  E-value=2e-18  Score=177.67  Aligned_cols=271  Identities=16%  Similarity=0.084  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------H
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G  449 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~  449 (676)
                      ...+..+|..+...|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++...|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            56778889999999999999999999999877552     267889999999999999999999999875533      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----C
Q 005808          450 EAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----N  516 (676)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~  516 (676)
                      .++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|...+++++...+.     .
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            346789999999999999999999999764        334557788999999999999999999999998765     2


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----H
Q 005808          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAW-----GHLTQFYQDLANSEKALECLQQVLYIDKRF----S  585 (676)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~-----~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~  585 (676)
                      ..++..+|.++...|++++|..++++++...+.  .+..+     ...+.++...|++++|...+.+++...+..    .
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            467888999999999999999999999876332  21111     134556889999999999999998776542    3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      ..+..+|.++...|++++|...+++++...+.      ...++..+|.++...|++++|...+++++.+.+.
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~  325 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence            35788999999999999999999999876432      2358888999999999999999999999987653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.82  E-value=3.9e-19  Score=196.84  Aligned_cols=188  Identities=11%  Similarity=-0.078  Sum_probs=132.6

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (676)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (676)
                      ..+|.++..++..|   ...|++++|+..|++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            34555666666555   56677777777777777        66677777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      ++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++.+|.+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777 777777777777777777777777


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  566 (676)
                      +...|++++|+..|+++++++|++..++.++|.++...++
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            7777777777777777777777777777777777665444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=4.9e-19  Score=196.07  Aligned_cols=187  Identities=13%  Similarity=0.016  Sum_probs=170.1

Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005808          444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKAL--------EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (676)
Q Consensus       444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  515 (676)
                      .+|+++.+++..+   ...|++++|+..+++++        ..+|++..++..+|.++...|++++|+..++++++.+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            4677777776666   77899999999999999        888999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q 005808          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (676)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (676)
                      +..+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++ +..|+++++.+|+++.+++++|.++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc
Q 005808          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (676)
Q Consensus       596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (676)
                      ...|++++|+..|+++++.+|++..+++.+|.++...|+
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999877555

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.81  E-value=1.3e-18  Score=179.30  Aligned_cols=233  Identities=15%  Similarity=0.139  Sum_probs=177.3

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH
Q 005808          417 ALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN-------SA  483 (676)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~  483 (676)
                      .++.+|..+...|++++|+.+|++++...+      ....++..+|.++...|+++.|+.++++++...+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            455667777777777777777777766532      13456777777777777777777777777765332       13


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHcccHHHHHHHHHHHHh-----cCcccHH
Q 005808          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDK---E---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LDRNFLE  552 (676)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~  552 (676)
                      .++..+|.++...|++++|+..+++++...+   +   ...++..+|.++...|++++|+.++++++.     .+|....
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            4677788888888888888888888877532   1   235677889999999999999999999888     6777788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHH
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYL  624 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~  624 (676)
                      ++..+|.++...|++++|+.++++++...+     .....+..++.++...++   +.+|+.++++. ...|....++..
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~  341 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence            899999999999999999999999988743     334556778888888888   88888888873 333445678889


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808          625 RASCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       625 la~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      +|.+|...|++++|..+|+++++...
T Consensus       342 la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          342 AAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.81  E-value=1.4e-18  Score=162.39  Aligned_cols=186  Identities=12%  Similarity=0.048  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (676)
                      .+.++..|..+...|++++|+..|++++..+|+++.+++..+.     ...             ....+.....+|.++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~~   65 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAYK   65 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHHH
Confidence            4455566666666666666666666666666666665555110     000             0000112223777777


Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC--HHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ--HKKAIK  606 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~  606 (676)
                      ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+  ...+..
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777665543  344555


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                      .+.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+..
T Consensus       146 ~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          146 DYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            66665543332 34566677777777777777777777777777643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.80  E-value=9.3e-19  Score=173.21  Aligned_cols=220  Identities=17%  Similarity=0.127  Sum_probs=172.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 005808          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEAWKRRGQARAALGESVEAI  469 (676)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~  469 (676)
                      ++++|+..|.++              |.++...|++++|+..|.+++.+.+.      ...++..+|.++...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            488888888877              56677888888888888888877432      2567888899999999999999


Q ss_pred             HHHHHHHhcCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHH
Q 005808          470 QDLSKALEFEPNS------ADILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKA  536 (676)
Q Consensus       470 ~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A  536 (676)
                      .+|++++.+.|..      ..++..+|.+|... |++++|+.+|++++.+.|..      ..++..+|.++..+|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999988876543      45788899999996 99999999999999887654      45688899999999999999


Q ss_pred             HHHHHHHHhcCcccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH-----HHHHHHHHH--HcCCHH
Q 005808          537 EEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-----YHLRGLLLH--GLGQHK  602 (676)
Q Consensus       537 ~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~la~~~~--~~g~~~  602 (676)
                      +.+|+++++..|++..       ++..+|.++...|++++|+..|++++.++|.....     +..++..+.  ..++++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~  257 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999998877532       67889999999999999999999999988876543     444555554  467899


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCY  629 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~  629 (676)
                      +|+..|++++.++|....++..+-...
T Consensus       258 ~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          258 EHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            999999999999887766666555444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.80  E-value=2.6e-18  Score=157.12  Aligned_cols=172  Identities=19%  Similarity=0.216  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  562 (676)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34556666677777777777777777766666667777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005808          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY  642 (676)
Q Consensus       563 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  642 (676)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|..++
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777788888888888888888888


Q ss_pred             HHHHhhCCCcHH
Q 005808          643 DAALDLELDSME  654 (676)
Q Consensus       643 ~~al~~~p~~~~  654 (676)
                      +++++.+|++..
T Consensus       168 ~~~~~~~~~~~~  179 (186)
T 3as5_A          168 KKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHCCCG
T ss_pred             HHHHHcCCCchh
Confidence            888777776543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=3.1e-18  Score=160.14  Aligned_cols=185  Identities=18%  Similarity=0.074  Sum_probs=120.6

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      ++..++..|..+...|++++|+..|++++..+|+++.+++..+.     ...             ....+.....+|.++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHH
Confidence            57788999999999999999999999999999999988877321     000             000123344566666


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHH
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN--SEKAL  571 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~  571 (676)
                      ...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+  ...+.
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  144 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE  144 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666655443  33445


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808          572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (676)
                      ..+.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+
T Consensus       145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            555555433222 234566677777777777777777777777775

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.79  E-value=1.3e-16  Score=156.61  Aligned_cols=249  Identities=14%  Similarity=0.112  Sum_probs=180.5

Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808          389 IAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (676)
Q Consensus       389 ~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~  457 (676)
                      ......|.+. +|+..+..++..+|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.
T Consensus        37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3344667775 79999999999999999999999999988776          678888888888888888888888888


Q ss_pred             HHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 005808          458 ARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSI----  530 (676)
Q Consensus       458 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----  530 (676)
                      ++...+.  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.+..+|..++.++...    
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            8888884  7888888888888888888888888888888887 58888888888888888888888888887776    


Q ss_pred             ----------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q 005808          531 ----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (676)
Q Consensus       531 ----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (676)
                                +.++++++++.+++..+|++..+|+.+..++... |.               +...         -...+
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~---------------~~~~---------~~~~~  252 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR---------------CELS---------VEKST  252 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG---------------GGCC---------HHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc---------------cccc---------hHHHH
Confidence                      3455666666666666666666665444443332 10               0000         00113


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYH---AIGEYREAIKDYDAALDLELDSMEKFVLQCL  661 (676)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  661 (676)
                      .++++++.+.++++..|++...+..++.+..   ..|..++...++.+.+++||.....|..+..
T Consensus       253 ~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          253 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  317 (331)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            4667777777777777776544444443322   2456778888888888888887776655543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.79  E-value=5.5e-18  Score=154.98  Aligned_cols=170  Identities=15%  Similarity=0.233  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ...++.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            55667777777777888888888877777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (676)
                      ..|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhcCccc
Q 005808          541 LKAIQLDRNF  550 (676)
Q Consensus       541 ~~al~~~p~~  550 (676)
                      +++++..|++
T Consensus       168 ~~~~~~~~~~  177 (186)
T 3as5_A          168 KKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHcCCCc
Confidence            7777766654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.79  E-value=2.5e-18  Score=177.20  Aligned_cols=233  Identities=15%  Similarity=0.097  Sum_probs=200.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-------
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-------  447 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------  447 (676)
                      ...++.+|..++..|++++|+..|++++...+      ..+.++..+|.++...|+++.|+.++.+++...+.       
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence            34678899999999999999999999997632      23678999999999999999999999999987543       


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCC
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVK-----LDKEN  516 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~  516 (676)
                      ...++..+|.++...|++++|+.+|++++...+.      ...++..+|.+|...|++++|+.++++++.     .+|..
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            2457889999999999999999999999986431      245788999999999999999999999999     77878


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcCcHHHH
Q 005808          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAY  588 (676)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~  588 (676)
                      ..++..+|.++...|++++|+.++++++...     |.....+..++.++...++   +.+|+..+++. ...+.....+
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~  339 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA  339 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence            8899999999999999999999999999984     3445567788888888888   88888888773 2334556778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          589 HLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      ..+|.+|...|++++|..+|+++++.
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999865

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=2e-19  Score=180.77  Aligned_cols=244  Identities=14%  Similarity=0.098  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ...+...|..++..|.|++|+.+|.++        ..|..+|.++.+.|++++|++.+.++     .++.+|.....++.
T Consensus       122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            348888999999999999999999977        46889999999999999999999998     47889999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cccHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAEE  538 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~  538 (676)
                      ..|+++.|..+... +..   +++-...++.+|...|++++|+.+++.++.+++.....+..+|.++.+  .++..+.++
T Consensus       189 ~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~  264 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE  264 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999777765 223   444455688899999999999999999999999999999999888865  567777888


Q ss_pred             HHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CcCcHHHHHHHHHHHHHcCCH
Q 005808          539 AHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYI------------DKRFSKAYHLRGLLLHGLGQH  601 (676)
Q Consensus       539 ~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~  601 (676)
                      .|...+.+.|     .+...|..+..+|...++++.|+..+-.....            .+.+.+.++.....|.  +..
T Consensus       265 ~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~  342 (449)
T 1b89_A          265 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFK  342 (449)
T ss_dssp             HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcC
Confidence            8877777777     67888999999999999999998877655333            3456777887777777  455


Q ss_pred             HHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          602 KKAIKDLSSGL--GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       602 ~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      ..++..+..++  .++++      .....+.+.|+..-...+++.+...+
T Consensus       343 p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl~~v~~~n  386 (449)
T 1b89_A          343 PLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYLRSVQNHN  386 (449)
T ss_dssp             GGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence            67788888888  44442      23345577788888888887666543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.79  E-value=1.8e-18  Score=170.03  Aligned_cols=202  Identities=14%  Similarity=0.062  Sum_probs=125.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Q 005808          448 AGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-------  512 (676)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------  512 (676)
                      ...++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..+++++..       
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            3445555555555555555555555555544        2333445666666666666666666666666655       


Q ss_pred             -CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 005808          513 -DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---  580 (676)
Q Consensus       513 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---  580 (676)
                       +|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++..   
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             2444556666677777777777777777776666        5556667777777777777777777777777654   


Q ss_pred             ------CcCcHHHHHHHHHHHHHcCC------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808          581 ------DKRFSKAYHLRGLLLHGLGQ------HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       581 ------~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (676)
                            .+.....+..++..+...+.      +..+...+.......|....++..+|.+|..+|++++|..+|++++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  33344556666665555433      444555555555556666788888899999999999999998888875


Q ss_pred             C
Q 005808          649 E  649 (676)
Q Consensus       649 ~  649 (676)
                      .
T Consensus       282 ~  282 (283)
T 3edt_B          282 R  282 (283)
T ss_dssp             C
T ss_pred             h
Confidence            3

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=5e-19  Score=155.77  Aligned_cols=143  Identities=15%  Similarity=0.062  Sum_probs=118.1

Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (676)
                      .||.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            36777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHH
Q 005808          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD-YDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      ++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++.
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888776654 58888888888888776666553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.78  E-value=1.2e-16  Score=156.77  Aligned_cols=210  Identities=12%  Similarity=0.160  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHH
Q 005808          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGE----------SVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFN  500 (676)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~  500 (676)
                      +|+..+.+++..+|++..+|...+.+....+.          +++++..+..++..+|.+..+|...+.++...+  .++
T Consensus        48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~  127 (331)
T 3dss_A           48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA  127 (331)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence            56777777777777777777776666665544          345555555555555555555555555555555  255


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (676)
Q Consensus       501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  579 (676)
                      +++.++.+++..+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|..++.++...+....+         
T Consensus       128 ~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~---------  198 (331)
T 3dss_A          128 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS---------  198 (331)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc---------
Confidence            55555555555555555555555555555554 35555555555555555555555555554443110000         


Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhh
Q 005808          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDL  648 (676)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~  648 (676)
                        +  .     .+  -...+.++++++++.+++..+|++..+|+.+..++...           +.++++++++++++++
T Consensus       199 --~--~-----~~--~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          199 --G--P-----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             ---------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --c--c-----cc--ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence              0  0     00  00003355666666666666666666665444444433           6789999999999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 005808          649 ELDSMEKFVLQCLAFY  664 (676)
Q Consensus       649 ~p~~~~~~~~~~~~~~  664 (676)
                      +|++.  |..++.+.+
T Consensus       268 ~pd~~--w~l~~~~~~  281 (331)
T 3dss_A          268 EPENK--WCLLTIILL  281 (331)
T ss_dssp             CTTCH--HHHHHHHHH
T ss_pred             Ccccc--hHHHHHHHH
Confidence            99994  555555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=7.1e-19  Score=154.80  Aligned_cols=143  Identities=13%  Similarity=0.001  Sum_probs=61.2

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005808          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (676)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  501 (676)
                      |.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|++++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH-HHHHHhcCcccHHHHHHHHHHHHHc
Q 005808          502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-HLKAIQLDRNFLEAWGHLTQFYQDL  564 (676)
Q Consensus       502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~  564 (676)
                      |+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            44444444444444444444444444444444333322 2444444444444444444444333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.77  E-value=2.7e-18  Score=168.77  Aligned_cols=224  Identities=14%  Similarity=0.079  Sum_probs=180.6

Q ss_pred             HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHH
Q 005808          392 VNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRR  455 (676)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l  455 (676)
                      ...|++++|+..|+++++.        .|..+.++..+|.++...|++++|+.++++++..        .|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3457777788888777763        2556788999999999999999999999999987        35567789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENKSA  519 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~  519 (676)
                      |.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..+++++..        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999987        4566778999999999999999999999999998        6666788


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCcCc
Q 005808          520 YTYLGLALSSIGEYKKAEEAHLKAIQLD---------RNFLEAWGHLTQFYQDLAN------SEKALECLQQVLYIDKRF  584 (676)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~~~~  584 (676)
                      +..+|.++...|++++|+.+++++++..         +.....+..++..+...+.      +..+...+.......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999999999999999999873         3345566677766665444      334444444444445667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (676)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (676)
                      ..++..+|.++...|++++|+.+|+++++..
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            7889999999999999999999999998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=4.1e-17  Score=154.64  Aligned_cols=205  Identities=15%  Similarity=0.086  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---HHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---AWKR  454 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~  454 (676)
                      +..++.+|..++..|++++|+..|++++...|.+   ..+++.+|.+++..|++++|+..|+++++.+|++..   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            5566677777777777777777777777766654   356667777777777777777777777777666542   5666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  534 (676)
                      +|.++...|..                ....+..++..+...|++++|+..|+++++..|++..++..+..+        
T Consensus        84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l--------  139 (225)
T 2yhc_A           84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL--------  139 (225)
T ss_dssp             HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH--------
T ss_pred             HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH--------
Confidence            66666554321                111122334444444555555555555555555444332211111        


Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                                             +.+.                    .........+|.++...|++.+|+..|+++++.
T Consensus       140 -----------------------~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  176 (225)
T 2yhc_A          140 -----------------------VFLK--------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD  176 (225)
T ss_dssp             -----------------------HHHH--------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -----------------------HHHH--------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                                   1000                    000112244566666666666666666666666


Q ss_pred             CCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          615 DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       615 ~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      .|+++   .++..+|.++.++|++++|+..++++....|++
T Consensus       177 ~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          177 YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            66554   456666666666666666666666666666654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=1.8e-17  Score=157.12  Aligned_cols=187  Identities=13%  Similarity=0.093  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTY  522 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~  522 (676)
                      +..++.+|..+...|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|+++++..|++..   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            3455556666666666666666666666665544   245666666666666666666666666666665542   5566


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (676)
                      +|.++...+..                ....+..++..+...|++++|+..|+++++..|+++.++..+..+....+   
T Consensus        84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---  144 (225)
T 2yhc_A           84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---  144 (225)
T ss_dssp             HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH---
T ss_pred             HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH---
Confidence            66666554421                11223345556666778888888888888888877655433222111110   


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhh
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM---EKFVLQCLAFYQVLF  668 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~  668 (676)
                                    ......+.+|.+|...|++++|+..|+++++..|+++   +++..++.++.+...
T Consensus       145 --------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~  199 (225)
T 2yhc_A          145 --------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM  199 (225)
T ss_dssp             --------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             --------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence                          0122446789999999999999999999999999986   678889998887653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=1.3e-18  Score=175.03  Aligned_cols=206  Identities=16%  Similarity=0.110  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  463 (676)
                      ...++.+|...|++.++..+++     .|+ ..+|..+|..++..|.|++|+.+|.++        ..|..+|.++..+|
T Consensus        97 ~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg  162 (449)
T 1b89_A           97 ETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG  162 (449)
T ss_dssp             ------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhc
Confidence            3456777888888888887775     243 458888888888889999988888876        35778888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (676)
                      ++++|++.++++     .++.+|...+.++...|+++.|..+.... ..+|   +-...+..+|.+.|.+++|+.+++++
T Consensus       163 ~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~a---d~l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          163 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHA---DELEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCH---HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCH---hhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            888888888888     46788888888888888888887766642 2333   33445778888888888888888888


Q ss_pred             HhcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          544 IQLDRNFLEAWGHLTQFYQD--LANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      +.+++.+..++..+|.+|.+  .++..+.++.|...+.+.|     ..+..|..+..+|.+.++|+.|+..+-...
T Consensus       234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          234 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence            88888888888888887764  4556666666666666666     666778888888888888888887666543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.76  E-value=2e-16  Score=155.64  Aligned_cols=254  Identities=15%  Similarity=0.077  Sum_probs=164.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C-CHHHH
Q 005808          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-G-ESVEA  468 (676)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g-~~~~A  468 (676)
                      ...+..++|+.++.+++..+|++..+|..++.++...| .+++++..+..++..+|++..+|...+.++... + +++++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence            34445578888888888888888888888888888888 488888888888888888888888888888877 7 78888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-------H
Q 005808          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFN--------AAVEDLSACVKLDKENKSAYTYLGLALSSIGE-------Y  533 (676)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-------~  533 (676)
                      +..+.+++..+|.+..+|...+.+....|.++        ++++++.++++.+|.+..+|..++.++...+.       +
T Consensus       145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~  224 (349)
T 3q7a_A          145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL  224 (349)
T ss_dssp             HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence            88888888888888888888888877777666        67777777777777777777777776666654       4


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      +++++++.+++..+|++..+|+.+..++...|+...-  .   ....-|.. +.+..          ....-.......+
T Consensus       225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~--~---~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  289 (349)
T 3q7a_A          225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP--I---LPAILPYTASKLNP----------DIETVEAFGFPMP  289 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG--G---HHHHGGGTC------------------------CCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc--c---cccccccccccccc----------cchhHHHHHHHHH
Confidence            5555555555555555555555555555544432000  0   00000000 00000          0111122222222


Q ss_pred             cC------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-hhCCCcHHHHHHHH
Q 005808          613 GI------DPSNIECLYLRASCYHAIGEYREAIKDYDAAL-DLELDSMEKFVLQC  660 (676)
Q Consensus       613 ~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~  660 (676)
                      ..      .+..+.++..++.+|...|+.++|.+.++... +.+|-....|....
T Consensus       290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~  344 (349)
T 3q7a_A          290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR  344 (349)
T ss_dssp             C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence            21      24567777788888888888888888887776 56777666665443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.74  E-value=6.1e-16  Score=159.00  Aligned_cols=251  Identities=14%  Similarity=0.045  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------A  483 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  483 (676)
                      ..++..+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++...|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45677889999999999999999999999877552     267789999999999999999999999875533      2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----c
Q 005808          484 DILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----F  550 (676)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~  550 (676)
                      .++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+.     .
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            347789999999999999999999999874        233567788999999999999999999999988764     3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CcHHHHH-----HHHHHHHHcCCHHHHHHHHHHhhcCCCCC----H
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYH-----LRGLLLHGLGQHKKAIKDLSSGLGIDPSN----I  619 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~  619 (676)
                      ..++..+|.++...|++++|...+++++...+  ..+..+.     .++.++...|++++|...+++++...|..    .
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            56788999999999999999999999987632  2211121     34566889999999999999999877653    3


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHH
Q 005808          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS------MEKFVLQCLAFYQ  665 (676)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~  665 (676)
                      ..+..++.++...|++++|...+++++...+..      ...+..++.++..
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~  305 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ  305 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence            467889999999999999999999998875532      2345555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.74  E-value=9.2e-16  Score=151.00  Aligned_cols=168  Identities=9%  Similarity=-0.002  Sum_probs=157.5

Q ss_pred             hHHHHHHhhccCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-cHHHHHHHHHHHH
Q 005808          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEG-KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R-ELEAAISDFTEAI  442 (676)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al  442 (676)
                      .-.....++..+|.+..++..++.++...| .+++++..++.++..+|.+..+|..++.++... + ++++++..+.+++
T Consensus        73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            444667788999999999999999999999 599999999999999999999999999999998 7 8999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHH
Q 005808          443 QSNPSAGEAWKRRGQARAALGESV--------EAIQDLSKALEFEPNSADILHERGIVNFKFKD-------FNAAVEDLS  507 (676)
Q Consensus       443 ~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~  507 (676)
                      +.+|.+..+|...+.+....|.++        +++++++++++.+|.+..+|...+.++...++       ++++++++.
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~  232 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYIL  232 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            999999999999999999998888        99999999999999999999999999999987       799999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808          508 ACVKLDKENKSAYTYLGLALSSIGEY  533 (676)
Q Consensus       508 ~al~~~~~~~~~~~~la~~~~~~g~~  533 (676)
                      +++..+|++..+|..+..++...|..
T Consensus       233 ~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          233 KSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999888887753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=4.5e-17  Score=138.27  Aligned_cols=121  Identities=17%  Similarity=0.203  Sum_probs=106.3

Q ss_pred             HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 005808          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (676)
Q Consensus       542 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (676)
                      ++..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34457888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (676)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (676)
                      |+.+|.++..+|++++|+..|+++++++|++.+++..++.+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999999999998887766654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.73  E-value=7e-14  Score=151.81  Aligned_cols=225  Identities=10%  Similarity=-0.041  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (676)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (676)
                      .......|++++...|..+..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|..+|+++
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345678899999999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHhC-----------CC-----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCC
Q 005808          510 VKLD-----------KE-----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLEAWGHLTQFYQDLAN  566 (676)
Q Consensus       510 l~~~-----------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~  566 (676)
                      +...           |.           ...+|...+.+..+.|+.+.|..+|.++++. .+....+|...+.+....++
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~  484 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence            8752           43           3457888889888999999999999999987 44456778777877777654


Q ss_pred             -HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHhccHHHHHHHH
Q 005808          567 -SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDY  642 (676)
Q Consensus       567 -~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~  642 (676)
                       ++.|..+|+.+++..|+++..|...+......|+.+.|..+|++++...|+   ...+|..........|+.+.+...+
T Consensus       485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence             899999999999999999999999999999999999999999999998873   5578888888899999999999999


Q ss_pred             HHHHhhCCCcHHH
Q 005808          643 DAALDLELDSMEK  655 (676)
Q Consensus       643 ~~al~~~p~~~~~  655 (676)
                      +++.+..|++...
T Consensus       565 ~R~~~~~P~~~~~  577 (679)
T 4e6h_A          565 KRFFEKFPEVNKL  577 (679)
T ss_dssp             HHHHHHSTTCCHH
T ss_pred             HHHHHhCCCCcHH
Confidence            9999999998653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.72  E-value=4e-17  Score=148.11  Aligned_cols=164  Identities=12%  Similarity=-0.003  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  562 (676)
                      .+.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            344566666777777777777777777777777777777777777777777777777777776666 5555444443322


Q ss_pred             -HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhccHHHHH
Q 005808          563 -DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       563 -~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~  639 (676)
                       ..+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..+|.++..+|+.++|+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence             22333456788888888888888888888888888888888888888888888764  557888888888888888888


Q ss_pred             HHHHHHHh
Q 005808          640 KDYDAALD  647 (676)
Q Consensus       640 ~~~~~al~  647 (676)
                      ..|++++.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.71  E-value=4e-17  Score=148.13  Aligned_cols=164  Identities=11%  Similarity=0.073  Sum_probs=102.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      ..+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.+.
T Consensus         5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~   83 (176)
T 2r5s_A            5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE   83 (176)
T ss_dssp             -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence            3455666777777777777777777777777777777777777777777777777777777777776 555544444332


Q ss_pred             H-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHH
Q 005808          460 A-ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKA  536 (676)
Q Consensus       460 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A  536 (676)
                      . ..+...+|+..+++++..+|+++.+++.+|.++...|++++|+..++++++.+|+.  ..++..+|.++...|+.++|
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            2 22223345666666666666666666666666666666666666666666666543  34566666666666666666


Q ss_pred             HHHHHHHH
Q 005808          537 EEAHLKAI  544 (676)
Q Consensus       537 ~~~~~~al  544 (676)
                      +..|++++
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.71  E-value=1.7e-16  Score=134.61  Aligned_cols=118  Identities=16%  Similarity=0.220  Sum_probs=82.0

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHH
Q 005808          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (676)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (676)
                      ..+|..++.+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++..+++.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            34555666666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (676)
                      +|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            77777777777777777777777777776666666554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=5.9e-17  Score=141.58  Aligned_cols=123  Identities=7%  Similarity=-0.001  Sum_probs=113.6

Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (676)
                      +++-.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++
T Consensus        16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            33444445677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                      ++.++|+++.+++.+|.+|..+|++++|+..|++++++.|+.+
T Consensus        96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999999876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.70  E-value=3.8e-16  Score=153.75  Aligned_cols=167  Identities=16%  Similarity=0.108  Sum_probs=83.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (676)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  559 (676)
                      |.+...+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444433444444


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhccHHH
Q 005808          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYRE  637 (676)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~  637 (676)
                      .+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++  ..++..++.++..+|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            44444444555555555555555555555555555555555555555555555555544  4455555555555555555


Q ss_pred             HHHHHHHHH
Q 005808          638 AIKDYDAAL  646 (676)
Q Consensus       638 A~~~~~~al  646 (676)
                      |...|++++
T Consensus       274 a~~~~r~al  282 (287)
T 3qou_A          274 LASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.70  E-value=4.7e-16  Score=154.90  Aligned_cols=231  Identities=15%  Similarity=0.058  Sum_probs=174.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (676)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (676)
                      ..|++++|..+++++.+..+..          ++. .++++.|+..|.++              |.++...|++++|+..
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence            4578888999998888766542          111 47888888888765              5677888899999999


Q ss_pred             HHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcccHHHHHHH
Q 005808          472 LSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEA  539 (676)
Q Consensus       472 ~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~  539 (676)
                      |.+++.+.+..      ..++..+|.+|...|++++|+.+|++++.+.+.  +    ..++..+|.++.. |++++|+.+
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            98888775422      447888899999999999999999998887432  1    3577889999988 999999999


Q ss_pred             HHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 005808          540 HLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKD  607 (676)
Q Consensus       540 ~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~  607 (676)
                      |++++.+.|..      ..++..+|.++..+|++++|+.+|++++...|..      ..++..+|.++...|++++|+.+
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999887653      5778899999999999999999999999876533      34778889999999999999999


Q ss_pred             HHHhhcCCCCCH-----HHHHHHHHHHHHhccHHHHHHH--HHHHHhhCC
Q 005808          608 LSSGLGIDPSNI-----ECLYLRASCYHAIGEYREAIKD--YDAALDLEL  650 (676)
Q Consensus       608 ~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p  650 (676)
                      |++++ .+|...     .....++..+ ..|+.+.+...  +..+..++|
T Consensus       218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~~~~ld~  265 (307)
T 2ifu_A          218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDN  265 (307)
T ss_dssp             HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCH
T ss_pred             HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCchhhhhhH
Confidence            99999 888653     2344455554 45665444331  344444444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.69  E-value=6.8e-16  Score=151.97  Aligned_cols=169  Identities=10%  Similarity=0.033  Sum_probs=118.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  456 (676)
                      .|.+.+.++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            36666777777777777777777777777777777777777777777777777777777777777777776555555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHH
Q 005808          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYK  534 (676)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~  534 (676)
                      ..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..+.++++.+|++  ..++..++.++...|+.+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            666666666667777777777777777777777777777777777777777777777766  666666777777777766


Q ss_pred             HHHHHHHHHHh
Q 005808          535 KAEEAHLKAIQ  545 (676)
Q Consensus       535 ~A~~~~~~al~  545 (676)
                      +|...|++++.
T Consensus       273 ~a~~~~r~al~  283 (287)
T 3qou_A          273 ALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            67666666553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.69  E-value=2.1e-16  Score=135.75  Aligned_cols=109  Identities=16%  Similarity=0.105  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCC--------hh-----HHHHHHHHHHHhhCHHHHHHHHHHHHHh-----
Q 005808           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYE--------IQ-----DICNRAFCYSQLELHKHVIRDCDKALQL-----   98 (676)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~--------~~-----~~~~ra~~~~~~g~~~~A~~~~~~al~~-----   98 (676)
                      ......+..+|..|+|++|+.+|++||+++|+        +.     +|+|+|.|+.++|+|++|+.+|++||++     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            44445778899999999999999999999966        22     7999999999999999999999999999     


Q ss_pred             --CCCChhHH----HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHH
Q 005808           99 --DPTLLQAY----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE  145 (676)
Q Consensus        99 --~p~~~~a~----~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~  145 (676)
                        +|+++++|    +++|.++..+|++++|+.+|++|+++.|+.......+..
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~  144 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER  144 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence              99999999    999999999999999999999998888876655444433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.68  E-value=4.7e-16  Score=169.36  Aligned_cols=165  Identities=10%  Similarity=-0.020  Sum_probs=112.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (676)
                      .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            36677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc---CCHHHHHHHHHHhhcCCCCC
Q 005808          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL---GQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       542 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~  618 (676)
                      ++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...   |++++|...++++++.+|++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            777777777777777777777777777777777777777777777777777777777   77777777777777777776


Q ss_pred             HHHHHHHH
Q 005808          619 IECLYLRA  626 (676)
Q Consensus       619 ~~~~~~la  626 (676)
                      ...+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence            66665555

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.68  E-value=5e-16  Score=154.73  Aligned_cols=203  Identities=13%  Similarity=0.022  Sum_probs=172.4

Q ss_pred             HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005808          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL  506 (676)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  506 (676)
                      ..|++++|..+++++.+..+..         .+...+++++|+.+|.++              |.+|...|++++|+..+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence            4688999999999998876642         011158899999998876              66888999999999999


Q ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          507 SACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECL  574 (676)
Q Consensus       507 ~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~  574 (676)
                      .+++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+.      ...++.++|.+|.. |++++|+.+|
T Consensus        60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~  138 (307)
T 2ifu_A           60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY  138 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            9999886432      457889999999999999999999999988543      25788999999998 9999999999


Q ss_pred             HHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHH
Q 005808          575 QQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDY  642 (676)
Q Consensus       575 ~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~  642 (676)
                      ++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.|.+      ..++..+|.++..+|++++|+.+|
T Consensus       139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~  218 (307)
T 2ifu_A          139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV  218 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999887643      5788999999999999999999999999876543      347888999999999999999999


Q ss_pred             HHHHhhCCCcHH
Q 005808          643 DAALDLELDSME  654 (676)
Q Consensus       643 ~~al~~~p~~~~  654 (676)
                      ++++ ++|+...
T Consensus       219 ~~al-~~p~~~~  229 (307)
T 2ifu_A          219 RESY-SIPGFSG  229 (307)
T ss_dssp             HHHT-TSTTSTT
T ss_pred             HHHh-CCCCCCC
Confidence            9999 9997643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.68  E-value=1.1e-15  Score=166.54  Aligned_cols=165  Identities=15%  Similarity=0.176  Sum_probs=129.3

Q ss_pred             cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005808          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS  507 (676)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  507 (676)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47888899999999988898888899999999999999999999999999999888889999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCcCc
Q 005808          508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANSEKALECLQQVLYIDKRF  584 (676)
Q Consensus       508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~  584 (676)
                      ++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...   |++++|+..++++++.+|..
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999988888899999999999999999999999999898888888999999888   88999999999999888887


Q ss_pred             HHHHHHHH
Q 005808          585 SKAYHLRG  592 (676)
Q Consensus       585 ~~~~~~la  592 (676)
                      ...+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence            76666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=4.3e-16  Score=148.27  Aligned_cols=208  Identities=14%  Similarity=0.074  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcccHHHHHHHHHHHHHhCCCcH----
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTEAIQSNPSAG----  449 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~----  449 (676)
                      ...++..|.-+ ..+++..|...|.+++..+|..+++|..+       +.++...++..+++..+.+.+.+.|...    
T Consensus         7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~   85 (282)
T 4f3v_A            7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI   85 (282)
T ss_dssp             HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred             HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence            34556666665 57888888888888888888888888888       7888888888888888888888766542    


Q ss_pred             -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005808          450 -----------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (676)
Q Consensus       450 -----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (676)
                                       ++...++.++...|++++|.+.|..++...|.+. +.+.+|.+++..++|++|+..++.+...
T Consensus        86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~  164 (282)
T 4f3v_A           86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW  164 (282)
T ss_dssp             ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred             ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence                             3444466777777777777777777777777666 7777777777777777777777766543


Q ss_pred             CCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808          513 DKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (676)
Q Consensus       513 ~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  587 (676)
                      .+..  ..+++.+|.++..+|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..+
T Consensus       165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence            2111  2466777777777777777777777776433  44 4567777777777777777777777777777776 555


Q ss_pred             HHHH
Q 005808          588 YHLR  591 (676)
Q Consensus       588 ~~~l  591 (676)
                      +..+
T Consensus       244 ~~aL  247 (282)
T 4f3v_A          244 AAAL  247 (282)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=4.9e-16  Score=147.89  Aligned_cols=197  Identities=12%  Similarity=0.056  Sum_probs=152.5

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHhCCCC-----------------
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHER-------GIVNFKFKDFNAAVEDLSACVKLDKEN-----------------  516 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~~~~-----------------  516 (676)
                      ..+++..|...|.+++..+|...++|..+       +.++...++..+++..+.+.+.+.|..                 
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            35666677777777777777777777666       566666666666766777666655442                 


Q ss_pred             ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc--HHHHHH
Q 005808          517 ----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHL  590 (676)
Q Consensus       517 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~  590 (676)
                          ..+...++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+..|+.+....+..  ..+++.
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence                24555678888889999999999988888888888 88889999999999999999998776543221  357889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCC--CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          591 RGLLLHGLGQHKKAIKDLSSGLGID--PS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      +|.++..+|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..+
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            9999999999999999999998544  55 5678999999999999999999999999999998 6654433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=1.2e-15  Score=149.66  Aligned_cols=197  Identities=13%  Similarity=0.053  Sum_probs=120.3

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      .+...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++..+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44555556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (676)
                      +...|++++|+..|+++++.+|+++..+...+....   ...++..+........+.++.+...++.++  .|++++|++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~  156 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE  156 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence            666666666666666666666554221111111111   111222222233344555666666666554  578888888


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhh
Q 005808          607 DLSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL  648 (676)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  648 (676)
                      .++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus       157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            88888888888777777777777666 6678888888877664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.65  E-value=6.8e-16  Score=134.82  Aligned_cols=107  Identities=13%  Similarity=-0.011  Sum_probs=43.2

Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (676)
Q Consensus       442 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (676)
                      +.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.+++
T Consensus        29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            33333333344444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCc
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDR  548 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p  548 (676)
                      .+|.++..+|++++|+..|++++++.|
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            444444444444444444444444333

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=8.4e-15  Score=137.04  Aligned_cols=174  Identities=12%  Similarity=0.016  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----cHHHHHHHHHHH
Q 005808          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHLKA  543 (676)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a  543 (676)
                      |+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+++
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            34444444433  34444444444444444444444444444432  344444445554444 3    455555555554


Q ss_pred             HhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhc
Q 005808          544 IQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLG  613 (676)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  613 (676)
                      .+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..+  ..+.+++.+|.+|..    .+++++|+.+|+++++
T Consensus        80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            32  3344555555555544    4555555555555555544  235555555555555    5556666666666555


Q ss_pred             CCCCCHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHHhhC
Q 005808          614 IDPSNIECLYLRASCYHAI-G-----EYREAIKDYDAALDLE  649 (676)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~  649 (676)
                      . |.++.+++.+|.+|... |     ++++|+.+|+++.+..
T Consensus       158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            5 34445556666655543 2     5666666666665553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=3.6e-17  Score=164.81  Aligned_cols=201  Identities=21%  Similarity=0.179  Sum_probs=134.2

Q ss_pred             HcccHHHHHHHHHH----HHHhCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005808          427 FQRELEAAISDFTE----AIQSNPSAGEAWKRRGQARA------------ALGESVEAIQDLSKALEFEPNSADILHERG  490 (676)
Q Consensus       427 ~~g~~~~A~~~~~~----al~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la  490 (676)
                      ..+.+++|+..+..    ++.+.|..  ++...|....            .++++++|+..+++++...|....++..+|
T Consensus        77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g  154 (336)
T 1p5q_A           77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG  154 (336)
T ss_dssp             CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence            34578888888888    78888875  3333333321            233444555555555555555555555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q 005808          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA  570 (676)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  570 (676)
                      .+++..|++++|+..|++++...|.+...            ..       .......|....++.++|.++...|++++|
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~-------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  215 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWLEYESSF------------SN-------EEAQKAQALRLASHLNLAMCHLKLQAFSAA  215 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCC------------CS-------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhccccC------------Ch-------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            55555555555555555555555544210            00       011111222267888888888888888888


Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHhh
Q 005808          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYDAALDL  648 (676)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  648 (676)
                      +..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus       216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888 4566666654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=2.1e-14  Score=134.25  Aligned_cols=175  Identities=17%  Similarity=0.086  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 005808          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK----DFNAAVEDLSA  508 (676)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~  508 (676)
                      +|+.+|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            355566666553  45666666666666666666666666666554  356666666666666 5    66667777666


Q ss_pred             HHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 005808          509 CVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD----LANSEKALECLQQVL  578 (676)
Q Consensus       509 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~al  578 (676)
                      +..  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|  .++.+++.+|.+|..    .+++++|+.+|+++.
T Consensus        79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            643  3566666677776665    6667777777777776666  346677777777776    667777777777776


Q ss_pred             hcCcCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHhhcCC
Q 005808          579 YIDKRFSKAYHLRGLLLHGL-G-----QHKKAIKDLSSGLGID  615 (676)
Q Consensus       579 ~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~  615 (676)
                      +. +.++.+++.+|.+|... |     ++++|+.+|+++.+..
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            66 44556677777776653 2     6777777777776653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.63  E-value=2e-15  Score=148.07  Aligned_cols=197  Identities=16%  Similarity=0.092  Sum_probs=122.1

Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (676)
Q Consensus       412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (676)
                      |.++..+..+|..++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556666666666666666666666666666666666666667777777777777777777777777766667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (676)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  571 (676)
                      ++...|++++|+..+++++..+|++...+........   ...++...........|.+..+...++.++  .|++++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence            7777777777777777776666644211111111111   111122222233344555555555555544  57777777


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHc-CCHHHHHHHHHHhhc
Q 005808          572 ECLQQVLYIDKRFSKAYHLRGLLLHGL-GQHKKAIKDLSSGLG  613 (676)
Q Consensus       572 ~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  613 (676)
                      +.++++++.+|++......++.++... +.+++|...|.++.+
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            777777777777766666666666655 567777777777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=1.7e-15  Score=132.64  Aligned_cols=119  Identities=21%  Similarity=0.135  Sum_probs=106.5

Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      -..+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34678888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (676)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (676)
                      +++.+++.+|.++..+|++++|+.+|+++++++|+++..
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            999999999999999999999999999999998887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.63  E-value=4.8e-15  Score=125.97  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------hHH
Q 005808           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-------QAY  106 (676)
Q Consensus        35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~  106 (676)
                      .+...+-.+..+|.+|+|++|+.+|++||+++ .++..|+|+|.||+++|+|++|+.+|++||+++|++.       .+|
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            44556667788999999999999999999999 5566799999999999999999999999999999864       589


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 005808          107 ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF  143 (676)
Q Consensus       107 ~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~  143 (676)
                      +++|.++..+|++++|+.+|+++++..|+ +.....+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            99999999999999999999999988875 3444333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.63  E-value=7e-12  Score=136.15  Aligned_cols=223  Identities=9%  Similarity=-0.025  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI-SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL  476 (676)
Q Consensus       398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  476 (676)
                      .....+|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999997 99999999999999999999999999999999999999998


Q ss_pred             hcC-----------CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccc-
Q 005808          477 EFE-----------PN-----------SADILHERGIVNFKFKDFNAAVEDLSACVKL-DKENKSAYTYLGLALSSIGE-  532 (676)
Q Consensus       477 ~~~-----------p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-  532 (676)
                      ...           |.           ...+|...+.+..+.|..+.|...|.++++. .+....+|...+.+....++ 
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           43           3457888888888899999999999999987 44556777777777777654 


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (676)
                      .+.|..+|+.+++..|+++..|...+......|+.+.|..+|++++...|   ....+|......-...|+.+.+..+.+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999887   356788888888899999999999999


Q ss_pred             HhhcCCCCCHH
Q 005808          610 SGLGIDPSNIE  620 (676)
Q Consensus       610 ~al~~~p~~~~  620 (676)
                      ++.+..|+++.
T Consensus       566 R~~~~~P~~~~  576 (679)
T 4e6h_A          566 RFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHSTTCCH
T ss_pred             HHHHhCCCCcH
Confidence            99999988653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.62  E-value=6e-14  Score=135.28  Aligned_cols=255  Identities=9%  Similarity=-0.080  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      |+.++. .+..+..|+|..++.-..   +..|.+ ....+.+.+++..+|++....       . .+....+...++..+
T Consensus        14 ~~~lf~-ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~   81 (310)
T 3mv2_B           14 PMDYFN-IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL   81 (310)
T ss_dssp             -CCTHH-HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh
Confidence            444443 456678899999998443   334433 456677788888888877421       1 112223444444443


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      .  ++   |+..+++.+...+.....+..+|.++...|++++|++++.+.+..+|  .+.+++..++.++...|+.+.|.
T Consensus        82 ~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~  156 (310)
T 3mv2_B           82 D--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS  156 (310)
T ss_dssp             T--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             c--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence            2  32   88999998887666677778999999999999999999999999887  78899999999999999999999


Q ss_pred             HHHHHHHhcCcc----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          538 EAHLKAIQLDRN----FLEAWGHL--TQFYQDLA--NSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKD  607 (676)
Q Consensus       538 ~~~~~al~~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~  607 (676)
                      +.++++.+.+|+    +..+...+  +++.+..|  ++.+|...|+++....|+  .+..+++   ++.++|++++|...
T Consensus       157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred             HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence            999999999883    23333444  54466666  999999999999888886  3334444   89999999999999


Q ss_pred             HHHhhcC----------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          608 LSSGLGI----------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       608 ~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      ++.+++.          +|+++.++.+++.+...+|+  +|.++++++.+.+|+++-+.-
T Consensus       234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence            9988876          48899999999999999998  899999999999999988643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=1.2e-16  Score=160.91  Aligned_cols=152  Identities=17%  Similarity=0.199  Sum_probs=101.1

Q ss_pred             HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 005808          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHERGI  491 (676)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~  491 (676)
                      ..+++++|+..+++++...|....++..+|.++...|++++|+..|++++...|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666667777777777777777777777777777777766               456666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH-
Q 005808          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA-  570 (676)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-  570 (676)
                      ++...|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| 
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666666666666 


Q ss_pred             HHHHHHHH
Q 005808          571 LECLQQVL  578 (676)
Q Consensus       571 ~~~~~~al  578 (676)
                      ...|.+++
T Consensus       285 ~~~~~~~~  292 (336)
T 1p5q_A          285 KKLYANMF  292 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33444444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.61  E-value=1.2e-14  Score=129.58  Aligned_cols=115  Identities=15%  Similarity=0.081  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc------------------c-CChhHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQ------------------S-YEIQDICNRAFCYSQLELHKHVIRDCDKAL   96 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~------------------~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al   96 (676)
                      +..-+.++..+|..|+|++|+.+|+++|++                  + .+...|+|+|.||+++|+|++|+.+|++||
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344456778899999999999999999998                  4 334569999999999999999999999999


Q ss_pred             HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh-HHHHHHHHHHHHH
Q 005808           97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS-ADLKQFLELEELL  150 (676)
Q Consensus        97 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~-~~~~~~~~l~~~~  150 (676)
                      +++|+++++|+++|.+|..+|++++|+..|+++++++|+.+ .....+..+....
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988 4444444444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.61  E-value=3.1e-14  Score=122.08  Aligned_cols=133  Identities=32%  Similarity=0.448  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (676)
                      ++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      |++++|+..+++++...|.++.++..+|.++...|++++|..+++++++.+|+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            78888888887777777777777777888888888888888888888777775

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.60  E-value=7.5e-14  Score=119.65  Aligned_cols=133  Identities=31%  Similarity=0.443  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      .++.+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005808          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  515 (676)
                      |++++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|.
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            66666666666666666655556666666666666666666666666555553

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.59  E-value=3.3e-15  Score=130.73  Aligned_cols=115  Identities=13%  Similarity=0.043  Sum_probs=70.0

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (676)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  482 (676)
                      .|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45555555565566666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (676)
                      +.+++.+|.++...|++++|+..|+++++..|+++
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            66666666666666666666666666666555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.59  E-value=7.9e-15  Score=127.57  Aligned_cols=120  Identities=17%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (676)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45677788888888888888888888888999988888888888888888888888888889999999999999888888


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      ++.+++.+|.++..+|++++|+.+|+++++++|+++....
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence            8888888999999999999999999998888887766543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.1e-14  Score=156.35  Aligned_cols=205  Identities=16%  Similarity=0.154  Sum_probs=144.3

Q ss_pred             HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          393 NEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       393 ~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      ..|.+ ++|+..+++++..+|++..+|..++.++...|+          +++++..+++++..+|++..+|...+.++..
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44444 577888888888888888888888888888877          7777777777777777777777777777777


Q ss_pred             cC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          462 LG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       462 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                      .+  ++++++..++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...+...++  
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~--  197 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS--  197 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS--
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc--
Confidence            77  5567777777777777777667766666666666 666666666666666666666666666665554322100  


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH------------HHH
Q 005808          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK------------AIK  606 (676)
Q Consensus       539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~------------A~~  606 (676)
                              .+..          -...+.++++++++.+++..+|++..+|+.++.++...+++++            |+.
T Consensus       198 --------~~~~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  259 (567)
T 1dce_A          198 --------GPQG----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSV  259 (567)
T ss_dssp             --------SSCC----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEE
T ss_pred             --------cccc----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEE
Confidence                    0000          0002457888899999999999999999999999888888666            556


Q ss_pred             HHHHhhcCCCC
Q 005808          607 DLSSGLGIDPS  617 (676)
Q Consensus       607 ~~~~al~~~p~  617 (676)
                      .|.+++..+|.
T Consensus       260 ~f~~~i~~~~~  270 (567)
T 1dce_A          260 CFSRPLTVGSR  270 (567)
T ss_dssp             EEEEEECTTBT
T ss_pred             Eeccceecccc
Confidence            67777777765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.56  E-value=1.3e-14  Score=126.29  Aligned_cols=114  Identities=14%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005808          404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (676)
Q Consensus       404 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  483 (676)
                      |++++..+|++..+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   86 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP   86 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            34444444444555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (676)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (676)
                      .+++.+|.++...|++++|+..|++++...|+++
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           87 RFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            5555555555555555555555555555544443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.56  E-value=9.8e-14  Score=129.95  Aligned_cols=131  Identities=18%  Similarity=0.223  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (676)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  564 (676)
                      .++.+|..+...|++++|+..+++++  .| ++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            45556666666666666666666653  22 4556666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCcCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808          565 ANSEKALECLQQVLYIDKRFS----------------KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (676)
Q Consensus       565 ~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (676)
                      |++++|+..|+++++..|.+.                .+++.+|.++...|++++|+..|+++++..|++
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            666666666666666555433                455555555555555555555555555555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=7.9e-14  Score=118.40  Aligned_cols=116  Identities=20%  Similarity=0.152  Sum_probs=95.6

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (676)
Q Consensus       548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (676)
                      |.....+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhccHHHHHHHHHHHHhhC------CCcHHHHHHHHHHH
Q 005808          628 CYHAIGEYREAIKDYDAALDLE------LDSMEKFVLQCLAF  663 (676)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~  663 (676)
                      ++..+|++++|+..|+++++++      |++..++..+..+.
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            8888888888888888888888      77777766666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=3.9e-13  Score=144.21  Aligned_cols=168  Identities=11%  Similarity=0.078  Sum_probs=153.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--
Q 005808          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA--  565 (676)
Q Consensus       498 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--  565 (676)
                      ..++|+..+.+++..+|++..+|...+.++...|+          +++++..+.++++.+|++..+|...+.++...+  
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            34677888888888899988888888888888888          899999999999999999999999999999999  


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh------------
Q 005808          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI------------  632 (676)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------  632 (676)
                      +++++++.+.++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++..+            
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~  203 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence            6799999999999999999999999999999999 899999999999999999999999999999885            


Q ss_pred             --ccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          633 --GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       633 --g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                        +.+++|++++.+++.++|++..+|.+++.++.+
T Consensus       204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence              778999999999999999999999999888765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.5e-13  Score=116.59  Aligned_cols=114  Identities=19%  Similarity=0.251  Sum_probs=81.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      .+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++..+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFE------PNSADILHERGIVN  493 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~  493 (676)
                      ...|++++|+..|++++..+      |.+..++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            77777777777777777776      66666666665554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.53  E-value=1e-13  Score=123.81  Aligned_cols=118  Identities=16%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (676)
Q Consensus       548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (676)
                      +.....+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34466677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                      ++..+|++++|+.+|+++++++|++..+++..++...+
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            77777777777777777777777777666666555444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.53  E-value=7.2e-13  Score=127.77  Aligned_cols=227  Identities=9%  Similarity=-0.039  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ....+.+.++++..|++....       . .+....+...++..+  .+.   |+..+++.+...+.....+..+|.++.
T Consensus        45 ~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~--~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~  111 (310)
T 3mv2_B           45 NTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL--DTK---NIEELENLLKDKQNSPYELYLLATAQA  111 (310)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH--TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh--ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            345666778888888887421       1 112223444444443  232   888999888776666777789999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcc-
Q 005808          461 ALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIG-  531 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g-  531 (676)
                      ..|++++|+.++.+.+..+|  .+.+++...+.++...|+.+.|.+.++++.+.+|+      .......-+++....| 
T Consensus       112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~  191 (310)
T 3mv2_B          112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK  191 (310)
T ss_dssp             HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence            99999999999999999887  78899999999999999999999999999999883      2233333355566666 


Q ss_pred             -cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CcCcHHHHHHHHHHHHHcCC
Q 005808          532 -EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI----------DKRFSKAYHLRGLLLHGLGQ  600 (676)
Q Consensus       532 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g~  600 (676)
                       ++.+|..+|+++.+..|+.......+. ++..+|++++|...++.+++.          +|+++.++.+++.+....|+
T Consensus       192 ~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence             999999999999998887322222222 899999999999999988776          48899999999999999998


Q ss_pred             HHHHHHHHHHhhcCCCCCHHHHH
Q 005808          601 HKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                        +|.++++++.+..|+++.+.-
T Consensus       271 --~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          271 --DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             --TTHHHHHHHHHTTCCCHHHHH
T ss_pred             --HHHHHHHHHHHhCCCChHHHH
Confidence              899999999999999987654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.52  E-value=1.7e-14  Score=133.47  Aligned_cols=152  Identities=16%  Similarity=0.098  Sum_probs=94.8

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----------------HHHHHHH
Q 005808          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL----------------EAWGHLT  558 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la  558 (676)
                      ..|+++.+.+.+.......+.....+..+|.++...|++++|+..|++++...|.++                .++..+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            334444444444333333333334444445555555555555555555554444443                6778888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH
Q 005808          559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (676)
Q Consensus       559 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (676)
                      .++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..++..++.++..+++..++
T Consensus        96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A           96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888877776


Q ss_pred             H-HHHHHHH
Q 005808          639 I-KDYDAAL  646 (676)
Q Consensus       639 ~-~~~~~al  646 (676)
                      . ..|.+.+
T Consensus       176 ~~~~~~~~f  184 (198)
T 2fbn_A          176 DKLTFGGMF  184 (198)
T ss_dssp             ---------
T ss_pred             HHHHHHHHh
Confidence            6 4444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=4.9e-13  Score=119.44  Aligned_cols=132  Identities=16%  Similarity=0.177  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (676)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (676)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHHhccHHHHHHHHHHHHhh
Q 005808          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRA--SCYHAIGEYREAIKDYDAALDL  648 (676)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~  648 (676)
                      ..|++++|+.+|++++..+|++..++..++  ..+...|++++|+..+.++..+
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            888888888888888888888887774444  4477888899998888877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.52  E-value=4.5e-13  Score=125.37  Aligned_cols=133  Identities=19%  Similarity=0.249  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ...++.+|..++..|++++|+..|++++  +| ++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4467888999999999999999999885  33 68899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808          461 ALGESVEAIQDLSKALEFEPNSA----------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (676)
                      ..|++++|+..|++++...|.+.                .+++.+|.++...|++++|+..+++++...|++
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            99999999999999999887765                888888999999999999999999988888876

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.52  E-value=6.5e-14  Score=126.93  Aligned_cols=126  Identities=16%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHcCCH--HHH
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANS--EKA  570 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A  570 (676)
                      ...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            3445555566666666655565555555566666666666666666666555555555555555555 4555555  555


Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (676)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (676)
                      +..+++++..+|.++.++..+|.++...|++++|+..|++++..+|++.
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            5555555555555555555555555555555555555555555555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.52  E-value=4.9e-13  Score=132.11  Aligned_cols=163  Identities=12%  Similarity=0.068  Sum_probs=96.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHH
Q 005808          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAW  554 (676)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~  554 (676)
                      ...+..+...|++++|+..+.+++...+...      ..++.+|.++...|++++|+..+++++...+..      ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3444445555555555555555555444332      123345555556666666666666666543222      4466


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH---hcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHH
Q 005808          555 GHLTQFYQDLANSEKALECLQQVL---YIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIEC  621 (676)
Q Consensus       555 ~~la~~~~~~~~~~~A~~~~~~al---~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~  621 (676)
                      ..+|.+|...|++++|+.+|++++   +..|++    ..++.++|.+|...|++++|+.++++++...++      ...+
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            666666666666666666666666   233332    146667777777777777777777777655322      1566


Q ss_pred             HHHHHHHHHHhccHHHH-HHHHHHHHhhC
Q 005808          622 LYLRASCYHAIGEYREA-IKDYDAALDLE  649 (676)
Q Consensus       622 ~~~la~~~~~~g~~~~A-~~~~~~al~~~  649 (676)
                      ++.+|.+|..+|++++| ..+|++++.+.
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            77777777777777777 66677776543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=6.5e-13  Score=118.63  Aligned_cols=131  Identities=19%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.+..++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            55667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHER--GIVNFKFKDFNAAVEDLSACVK  511 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~  511 (676)
                      ..|++++|+.+|++++..+|.+..++..+  +..+...|++++|+..+.++..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            77777777777777777777766665333  3335566666666666665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.51  E-value=1.3e-13  Score=124.92  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=114.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q 005808          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA-RAALGES--VE  467 (676)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~  467 (676)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|++..++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999 7889998  99


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005808          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (676)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  520 (676)
                      |+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++....
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            99999999999999999999999999999999999999999999998875443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.51  E-value=1.4e-12  Score=128.85  Aligned_cols=163  Identities=9%  Similarity=0.002  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HH
Q 005808          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------AD  484 (676)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  484 (676)
                      .+...+..+...|++++|+..+.+++...+...      ..+..+|.++...|++++|+..+++++...+..      ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            334444455555555555555555555444322      123334555555555555555555555443222      33


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cH
Q 005808          485 ILHERGIVNFKFKDFNAAVEDLSACV---KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FL  551 (676)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~  551 (676)
                      ++..+|.+|...|++++|+.++++++   ...|++.    .++.++|.++...|++++|+.++++++...+.      ..
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            55555555555555555555555555   2233322    34555555555555555555555555554322      14


Q ss_pred             HHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 005808          552 EAWGHLTQFYQDLANSEKA-LECLQQVLY  579 (676)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A-~~~~~~al~  579 (676)
                      .++..+|.+|...|++++| ..++++++.
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            4555555555555555555 444555543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.50  E-value=3.8e-14  Score=131.16  Aligned_cols=142  Identities=24%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHH
Q 005808          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----------------DILHERGI  491 (676)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~  491 (676)
                      .|.++++.+.+.......+.....+..+|..+...|++++|+..|.+++...|.++                .++..+|.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   96 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT   96 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333444444444444444444444444444444333                34444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Q 005808          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (676)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  569 (676)
                      ++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++.++|++..++..++.++...++..+
T Consensus        97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A           97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444444444444444444444444444444444443333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.49  E-value=9.2e-13  Score=112.61  Aligned_cols=119  Identities=23%  Similarity=0.327  Sum_probs=70.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (676)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (676)
                      .....+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34555555666666666666666666666665555555666666666666666666666666666656555556666666


Q ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  565 (676)
                      +...|++++|+.++++++..+|.+..++..++.++...|
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            666666666666666666555555555555555555444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.49  E-value=5.1e-13  Score=114.25  Aligned_cols=123  Identities=17%  Similarity=0.238  Sum_probs=101.5

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      ..+..+..++.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            34566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (676)
                      |.++...|++++|+.+|++++..+|.+..++..++.++...|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888887776653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=5.6e-13  Score=113.46  Aligned_cols=121  Identities=21%  Similarity=0.341  Sum_probs=88.1

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  458 (676)
                      ..+..++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+.+++...|++..++..+|.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            34666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF  499 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  499 (676)
                      +...|++++|+.++++++...|.++.++..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            77777777777777777777777777777777777666653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.48  E-value=4.9e-13  Score=119.39  Aligned_cols=116  Identities=28%  Similarity=0.330  Sum_probs=86.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  456 (676)
                      .+..+..++.+|..++..|+|++|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++.++|++..+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34456677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (676)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (676)
                      .++...|++++|+.+|++++.++|++...+...+..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            777777777777777777777777776655554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.48  E-value=7.9e-13  Score=130.59  Aligned_cols=127  Identities=13%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CcCcHHHHH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYH  589 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~  589 (676)
                      +|.++...|++++|+.++++++...+..      ..++..+|.+|...|++++|+.+|+++++.       .+....++.
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            4444444455555555555555432211      234556666666666666666666666531       122345677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC
Q 005808          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGE-YREAIKDYDAALDLE  649 (676)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  649 (676)
                      ++|.+|...|++++|+.++++++++.+..      ..+++.+|.+|..+|+ +++|+.+|++++.+.
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            77777777777777777777777654322      6788888888888884 688888888887653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.47  E-value=6.2e-13  Score=113.21  Aligned_cols=119  Identities=24%  Similarity=0.303  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      ++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            34555556666666666666666666666666655555556666666666666666666666655555555555555555


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      ...|++++|+..+++++...|++..++..++.++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            555555555555555555555555555555555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.46  E-value=2.3e-12  Score=127.23  Aligned_cols=160  Identities=11%  Similarity=0.017  Sum_probs=116.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTY  522 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~  522 (676)
                      .+..+...|++++|+..+++++...+..+.      .+..+|.++...|++++|+..+++++...+..      ..++..
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            355566667777777777777666555443      23346777777778888888888887754332      235777


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc------HHHHH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYH  589 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~  589 (676)
                      +|.+|...|++++|+.+|+++++.       .+....++.++|.+|..+|++++|+.+++++++..+..      +.++.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888888888888888888888742       23335678888888888899999998888888765432      67888


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHhhcC
Q 005808          590 LRGLLLHGLG-QHKKAIKDLSSGLGI  614 (676)
Q Consensus       590 ~la~~~~~~g-~~~~A~~~~~~al~~  614 (676)
                      .+|.++...| .+++|+.+|++++.+
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            9999999999 468999999888764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.46  E-value=5.5e-13  Score=111.97  Aligned_cols=103  Identities=18%  Similarity=0.037  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005808          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (676)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (676)
                      ..++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34677888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHhhCCCcHH
Q 005808          632 IGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       632 ~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      .|++++|+..|+++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999887653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.45  E-value=6e-13  Score=112.88  Aligned_cols=103  Identities=10%  Similarity=0.059  Sum_probs=77.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-------HHHH
Q 005808          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECL  622 (676)
Q Consensus       550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  622 (676)
                      ...++..+|..++..|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            345666777777777777777777777777777777777777777777777777777777777766554       2467


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          623 YLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ..+|.++..+|++++|+.+|++++...|+.
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            778888888888888888888888887753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.44  E-value=1e-13  Score=145.75  Aligned_cols=161  Identities=22%  Similarity=0.211  Sum_probs=110.6

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (676)
                      .++++++|+..++.++...|.....+..+|..++..|++++|+..|++++...|.+....            .+      
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~------  307 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EK------  307 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HH------
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hH------
Confidence            456677788888777777777788888888888888888888888888888877763200            00      


Q ss_pred             HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (676)
Q Consensus       541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (676)
                       ...+..+....++.++|.+|..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus       308 -~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          308 -ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence             0011222335666777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhccHHHHHH
Q 005808          621 CLYLRASCYHAIGEYREAIK  640 (676)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~  640 (676)
                      ++..++.++..+|++++|..
T Consensus       387 a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          387 ARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777766653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.44  E-value=5.5e-13  Score=114.53  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-------c-----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKR-------F-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------  614 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  614 (676)
                      .+...|..++..|++++|+..|+++++.+|+       +     ..+|.++|.++..+|+|++|+..|++++++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            3444555555555555555555555555554       2     337777788888888888888887777777      


Q ss_pred             -CCCCHHHH----HHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808          615 -DPSNIECL----YLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (676)
Q Consensus       615 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (676)
                       +|++..+|    +++|.++..+|++++|+..|+++++++|++..+.
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~  139 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  139 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence             99888888    9999999999999999999999999988876543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.43  E-value=6.3e-12  Score=105.82  Aligned_cols=109  Identities=32%  Similarity=0.451  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      .++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            33333333333444444444444433333333333333333333333333333333333333333333333333333333


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808          463 GESVEAIQDLSKALEFEPNSADILHERGI  491 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (676)
                      |++++|+.++++++...|.++.++..++.
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  119 (125)
T 1na0_A           91 GDYDEAIEYYQKALELDPNNAEAKQNLGN  119 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            33333333333333333333333333333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.43  E-value=4.5e-12  Score=106.75  Aligned_cols=113  Identities=29%  Similarity=0.377  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (676)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808          631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (676)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (676)
                      ..|++++|..+|+++++.+|++..++..++.++
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            444555555555544444444444444444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.43  E-value=1.2e-12  Score=109.90  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      ..++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHH
Q 005808          462 LGESVEAIQDLSKALEFEPNSAD  484 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~~~  484 (676)
                      .|++++|+..++++++.+|.+..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999887643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.43  E-value=3.1e-12  Score=110.17  Aligned_cols=101  Identities=20%  Similarity=0.296  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      ++..++.+|.+++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhcCCHHHHHHHHHHHHHhCC
Q 005808          494 FKFKDFNAAVEDLSACVKLDK  514 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~  514 (676)
                      ...|++++|+..+++++...|
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHCh
Confidence            444444444444444444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.43  E-value=2.2e-12  Score=111.12  Aligned_cols=104  Identities=16%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (676)
Q Consensus       548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (676)
                      |.++..+..+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            33444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhccHHHHHHHHHHHHhhCCC
Q 005808          628 CYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      ++..+|++++|+..|+++++++|+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            555555555555555555555444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=7.5e-12  Score=104.19  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56677777777777788888888877777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      ..|++++|+..+++++..+|.++.++..++.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            777777777777777777777777777666553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.42  E-value=1.4e-13  Score=144.63  Aligned_cols=144  Identities=16%  Similarity=0.173  Sum_probs=94.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHH
Q 005808          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---------------GEAWKRRGQA  458 (676)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~  458 (676)
                      .+++++|+..|+.++...|..+.++..+|.+++..|++++|+..|.+++.+.|.+               ..++.++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            3456667767777777777777777777888877888888888888877777766               4566666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      +..+|++++|+..|++++.++|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666666655554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=4.9e-12  Score=105.34  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (676)
                      +..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808          631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (676)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (676)
                      ..|++++|..+|+++++.+|+++.++..++.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            66666666666666666666666665554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.40  E-value=2.9e-12  Score=114.05  Aligned_cols=114  Identities=21%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQL------------------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (676)
                      .+...|..++..|++++|+..|.+++..                  .|....++.++|.++...|++++|+..+++++..
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3444555555555555555555555544                  3444445555555555555555555555555555


Q ss_pred             CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHh
Q 005808          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAI  632 (676)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~  632 (676)
                      +|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus        93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555544 3344444444333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.40  E-value=6.9e-13  Score=113.63  Aligned_cols=102  Identities=14%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             cCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005808           49 LRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELH----------KHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (676)
Q Consensus        49 ~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~  117 (676)
                      .+.|++|+.+|.++++++ .++..+.++|.++..+|++          ++|+..|++||+++|++..+|+.+|.+|..+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            346789999999999999 5667799999999999886          49999999999999999999999999999985


Q ss_pred             -----------CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 005808          118 -----------RKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (676)
Q Consensus       118 -----------~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~  151 (676)
                                 ++++|+.+|++|++++|+.+...+. +++-+...
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~~~~ka~  138 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LEMTAKAP  138 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHTHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHhCH
Confidence                       8999999999999999998755443 34444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.40  E-value=3.9e-12  Score=117.80  Aligned_cols=159  Identities=13%  Similarity=0.044  Sum_probs=107.8

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHcCCH
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ------LDRNFLEAWGHLTQFYQDLANS  567 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~  567 (676)
                      +..|++++|...++......+....++..+|.++...|++++|+.++++++.      ..+....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            3456666666644443332224456667777777777777777777777776      3344566777788888888888


Q ss_pred             HHHHHHHHHHHhc---Cc----CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC----HHHHHHHHHHHHHhcc
Q 005808          568 EKALECLQQVLYI---DK----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SN----IECLYLRASCYHAIGE  634 (676)
Q Consensus       568 ~~A~~~~~~al~~---~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~  634 (676)
                      ++|+..+.+++..   .+    ....++..+|.++...|++++|+.++++++...+  .+    ..++..+|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888888877766   22    2245677788888888888888888888875422  11    2456788888889999


Q ss_pred             HHHHHHHHHHHHhhCCCc
Q 005808          635 YREAIKDYDAALDLELDS  652 (676)
Q Consensus       635 ~~~A~~~~~~al~~~p~~  652 (676)
                      +++|..++++++++....
T Consensus       163 ~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          163 LLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999998888875543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.38  E-value=4.9e-11  Score=124.96  Aligned_cols=200  Identities=9%  Similarity=0.014  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----------------EALIGRGTARAFQRELEAAISDFTEAIQ  443 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (676)
                      |...+..|..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|++++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56788899999999999999999999999887642                 4688999999999999999999999988


Q ss_pred             hCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808          444 SNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (676)
Q Consensus       444 ~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (676)
                      ..+...      .+...++.++...|+++.|+.++++++...+      ....++..+|.++...|++++|+..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            655432      3455678888888999999999999986532      2366889999999999999999999999887


Q ss_pred             hC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          512 LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVL  578 (676)
Q Consensus       512 ~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al  578 (676)
                      ..      +....++..+|.++...|++++|..++++++...+..       ...+..+|.++...|++.+|..+|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            52      3335789999999999999999999999998764321       4567788999999999999999999998


Q ss_pred             hc
Q 005808          579 YI  580 (676)
Q Consensus       579 ~~  580 (676)
                      ..
T Consensus       244 ~~  245 (434)
T 4b4t_Q          244 ES  245 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-11  Score=108.02  Aligned_cols=116  Identities=17%  Similarity=0.115  Sum_probs=88.9

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (676)
                      .|.....+..+|..+...|++++|+..|+++++..|++   ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            45566777777777777777777777777777777766   677777888888888888888888888888887788888


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808          624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (676)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (676)
                      .+|.++..+|++++|+.+|+++++++|++..++..+..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            888888888888888888888888888877766555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.38  E-value=1.1e-11  Score=105.36  Aligned_cols=112  Identities=20%  Similarity=0.228  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR  455 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l  455 (676)
                      ..++.+|..++..|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3456777777777777777777777777777776   677777777777777777777777777777777   6777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      |.++...|++++|+..|++++...|+++.+......+.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            77777777777777777777777777766555444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.4e-11  Score=107.49  Aligned_cols=119  Identities=21%  Similarity=0.230  Sum_probs=105.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      .+..+..++.+|..++..|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++..+|++..++.
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            45668889999999999999999999999999999987   788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (676)
                      .+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999888888877776543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.37  E-value=1e-11  Score=114.95  Aligned_cols=24  Identities=17%  Similarity=0.003  Sum_probs=11.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          555 GHLTQFYQDLANSEKALECLQQVL  578 (676)
Q Consensus       555 ~~la~~~~~~~~~~~A~~~~~~al  578 (676)
                      ..+|.++...|++++|+..+++++
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHH
Confidence            444444444444444444444444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.35  E-value=1.1e-12  Score=132.08  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=101.9

Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Q 005808          477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (676)
Q Consensus       477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  556 (676)
                      ...+.....+..+|..++..|++++|+..|++++...|.+.        .+...+++.++...+.         ..++.+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~n  235 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLN  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHH
Confidence            33345567889999999999999999999999999988754        1234555555554432         247899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHHhccH
Q 005808          557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC-YHAIGEY  635 (676)
Q Consensus       557 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~  635 (676)
                      +|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..
T Consensus       236 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998 4556778


Q ss_pred             HHHHHHHHHHHhhCCCcHH
Q 005808          636 REAIKDYDAALDLELDSME  654 (676)
Q Consensus       636 ~~A~~~~~~al~~~p~~~~  654 (676)
                      +++...|.+++...|+++.
T Consensus       316 ~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          316 QKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHhhCCCCCCCC
Confidence            8999999999999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.34  E-value=2.9e-12  Score=106.98  Aligned_cols=92  Identities=11%  Similarity=0.036  Sum_probs=81.6

Q ss_pred             hcCCHHHHHHHHHHHHcc---c-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808           48 SLRNWSKAIRILDSLLAQ---S-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (676)
Q Consensus        48 ~~~~y~~Ai~~y~~ai~~---~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~  123 (676)
                      ..|+|++|+.+|.+++++   + .+...+.++|.++..+|+|++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            368999999999999999   4 445569999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHH
Q 005808          124 SVWEKGYEHALHQSAD  139 (676)
Q Consensus       124 ~~~~~al~~~~~~~~~  139 (676)
                      ..|+++++..|+.+..
T Consensus        82 ~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           82 ELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHhCCCcHHH
Confidence            9999999999988654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.34  E-value=2.4e-11  Score=103.20  Aligned_cols=111  Identities=13%  Similarity=0.007  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 005808          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERG  490 (676)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la  490 (676)
                      +++.+|.+++..|++++|+..|++++...|++.   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            456667777777777777777777777776665   566677777777777777777777777777766   66677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (676)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (676)
                      .++...|++++|+..+++++...|++..+......+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            7777777777777777777777776665554444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.33  E-value=4.3e-12  Score=104.62  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=72.8

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHHHHH
Q 005808          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYL  624 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  624 (676)
                      +|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            35555666666666666666666766666666666666666667777777777777777777777776666  6677777


Q ss_pred             HHHHHHHh-ccHHHHHHHHHHHHhhCCCc
Q 005808          625 RASCYHAI-GEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       625 la~~~~~~-g~~~~A~~~~~~al~~~p~~  652 (676)
                      +|.++... |++++|+.++++++...|++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            77777777 77777777777777666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.33  E-value=5.3e-09  Score=110.34  Aligned_cols=205  Identities=10%  Similarity=-0.064  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 005808          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV--  510 (676)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--  510 (676)
                      .....|++++...|..+..|...+..+...|+.+.|...|++++.. |.+...+...+... ..+   +....+....  
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~  271 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSM  271 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHh
Confidence            3445556666655666666666666655566666666666666655 55544444333321 111   0001111110  


Q ss_pred             --------HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q 005808          511 --------KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-NSEKALECLQQVLYID  581 (676)
Q Consensus       511 --------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~  581 (676)
                              ...+....+|...+......++.+.|...|.++ ...+....+|...+.+....+ +.+.|..+|+.+++..
T Consensus       272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH  350 (493)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred             hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence                    001112356777788877888899999999999 433335667777777766666 5999999999999988


Q ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      |+.+..+...+......|+.+.|...|+++.    .....|......-...|+.+.+...+++++.
T Consensus       351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9888888888888889999999999999983    4578888888888888999999998998885

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.31  E-value=1.2e-11  Score=101.78  Aligned_cols=102  Identities=17%  Similarity=0.132  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Q 005808          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERG  490 (676)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la  490 (676)
                      +++.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.  +..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            333334444444444444444444444444444444444444444444444444444444444444444  444444444


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHhCC
Q 005808          491 IVNFKF-KDFNAAVEDLSACVKLDK  514 (676)
Q Consensus       491 ~~~~~~-~~~~~A~~~~~~al~~~~  514 (676)
                      .++... |++++|++.+++++...|
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhccc
Confidence            444444 444444444444444333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.31  E-value=1.7e-11  Score=104.13  Aligned_cols=97  Identities=13%  Similarity=0.100  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-------HHHHHHHH
Q 005808          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECLYLRA  626 (676)
Q Consensus       554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la  626 (676)
                      +..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|++       +.+++.+|
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la   86 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            33333333333444444444444333333333333344444444444444444444443333332       33444444


Q ss_pred             HHHHHhccHHHHHHHHHHHHhhCC
Q 005808          627 SCYHAIGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       627 ~~~~~~g~~~~A~~~~~~al~~~p  650 (676)
                      .++...|++++|+.+|+++++..|
T Consensus        87 ~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           87 NSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC
Confidence            444444444444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.31  E-value=4.2e-13  Score=141.57  Aligned_cols=123  Identities=18%  Similarity=0.230  Sum_probs=70.9

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q 005808          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (676)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (676)
                      ..+|.++...|++++|+..|+++++.+|.+..++..+|.++..+|++++|+..++++++.+|+++.++..+|.++..+|+
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            33455555555666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHHhccHHHHHHHHH
Q 005808          601 HKKAIKDLSSGLGIDPSNIECLYLRASC--YHAIGEYREAIKDYD  643 (676)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~  643 (676)
                      +++|+..|+++++.+|++..++..++.+  +...|++++|+..++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6666666666666666655555555555  555566666666666

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.31  E-value=2.4e-13  Score=143.44  Aligned_cols=133  Identities=20%  Similarity=0.188  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (676)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  564 (676)
                      .+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.++..+|.+|..+
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34455666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HhhcCCCC
Q 005808          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQHKKAIKDLS-----------SGLGIDPS  617 (676)
Q Consensus       565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~  617 (676)
                      |++++|+..|+++++.+|++..++..++.+  +...|++++|+..++           +++...|+
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            777777777777777777777777777766  677777777777777           66666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.30  E-value=2.2e-11  Score=103.47  Aligned_cols=112  Identities=14%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-------HHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAWK  453 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~  453 (676)
                      +..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       ..++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45566667777777777777777777777777666666777777777777777777777766665554       55666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      .+|.++...|++++|+.+|++++...| ++..+..++.+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            666666666666666666666666665 455555555444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.30  E-value=8.4e-12  Score=106.87  Aligned_cols=107  Identities=14%  Similarity=0.158  Sum_probs=69.5

Q ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (676)
                      +.+.+++|+..++++++++|+++.+|+++|.++...++++.+...+.                        .+++|+..|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~~l   69 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAITKF   69 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHHHH
Confidence            45566667777777777777777777767766666665542222111                        145666666


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          609 SSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      +++++++|++..+|+++|.+|..+           |++++|+.+|++|++++|++...+..+
T Consensus        70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A           70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            666666666666666666666665           478888888888888888877654443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.29  E-value=3.9e-11  Score=121.89  Aligned_cols=141  Identities=17%  Similarity=0.186  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  562 (676)
                      ...+..+|..++..|++++|+..|+++++..+...                  +...........|.+..++.++|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888888887643321                  111234445577888889999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005808          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD  641 (676)
Q Consensus       563 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  641 (676)
                      .+|++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888877653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.29  E-value=4e-12  Score=127.92  Aligned_cols=154  Identities=15%  Similarity=0.072  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +..+..+|..++..|+|++|+..|++++...|.+.        .+...|++.++...+.         ..++.++|.++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence            67788999999999999999999999999998754        1234455555544332         136778888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcccHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEA  539 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~  539 (676)
                      .+|++++|+.+|++++..+|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+++...
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888877 4445667778888


Q ss_pred             HHHHHhcCcccH
Q 005808          540 HLKAIQLDRNFL  551 (676)
Q Consensus       540 ~~~al~~~p~~~  551 (676)
                      |.+++...|.++
T Consensus       322 ~~~~l~~~p~~~  333 (338)
T 2if4_A          322 YKGIFKGKDEGG  333 (338)
T ss_dssp             ------------
T ss_pred             HHHhhCCCCCCC
Confidence            888888877764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.27  E-value=1e-10  Score=122.45  Aligned_cols=200  Identities=11%  Similarity=0.058  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------EAWKRRGQARAALGESVEAIQDLSKALE  477 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (676)
                      |.+....|..+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|+.++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45567778889999999999999999999887642                 3688899999999999999999999987


Q ss_pred             cCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808          478 FEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (676)
Q Consensus       478 ~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (676)
                      ..+...      .+...++.++...|+++.|+.++++++...+      ....++..+|.++...|++.+|...+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            655432      3566788888899999999999999987632      2357888999999999999999999999886


Q ss_pred             c------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808          546 L------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RF----SKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (676)
Q Consensus       546 ~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (676)
                      .      .+....++..++.+|...|++++|...+++++...+   ..    ...+..+|.++...|++.+|..+|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5      344478899999999999999999999999987643   11    3567788999999999999999999887


Q ss_pred             cC
Q 005808          613 GI  614 (676)
Q Consensus       613 ~~  614 (676)
                      ..
T Consensus       244 ~~  245 (434)
T 4b4t_Q          244 ES  245 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.27  E-value=9.8e-12  Score=103.70  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHHHhc---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005808          564 LANSEKALECLQQVLYI---DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK  640 (676)
Q Consensus       564 ~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  640 (676)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            56777777777777777   477777777888888888888888888888888888778888888888888888888888


Q ss_pred             HHHHHHhhCCCcHHHH
Q 005808          641 DYDAALDLELDSMEKF  656 (676)
Q Consensus       641 ~~~~al~~~p~~~~~~  656 (676)
                      .|+++++..|+++...
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            8888888877777654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.26  E-value=5.3e-11  Score=105.34  Aligned_cols=133  Identities=21%  Similarity=0.264  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------cHH
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSK  586 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~  586 (676)
                      ++..+|.++...|++++|+.+++++++..+..      ..++..+|.++...|++++|+..+++++...+.      ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            44555555556666666666666555554332      245666666666677777777777666655432      145


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      ++..+|.++...|++++|+.++++++...+      ....++..+|.++...|++++|..++++++++...
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            667777777777777777777777775522      12456778888888888888888888888876544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.25  E-value=7.8e-11  Score=119.69  Aligned_cols=140  Identities=18%  Similarity=0.190  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +..+..+|..++..|+|++|+..|+++++..+..+                  ............|....++.++|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888888888888888888887433211                  011123333345556666777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                      .+|++++|+.+++++++.+|+++.+++.+|.+|...|++++|+..++++++++|++..++..++.++...++++++..
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777766666665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.19  E-value=2.2e-08  Score=105.67  Aligned_cols=276  Identities=9%  Similarity=-0.040  Sum_probs=138.0

Q ss_pred             HHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HcccHHHH
Q 005808          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKE---DPMYPEALIGRGTARA----FQRELEAA  434 (676)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~----~~g~~~~A  434 (676)
                      .......+.+.....| +++.|..........++ .+.....|+.++..   +|.+...|...+..+.    ..|+.+.+
T Consensus        30 ~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v  108 (493)
T 2uy1_A           30 YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI  108 (493)
T ss_dssp             HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence            3334445555555555 67777777666666553 35566677777764   5666777777666543    34677788


Q ss_pred             HHHHHHHHHhCCCcHH-HHHHHHHH----------------------------------------------HHHcCC---
Q 005808          435 ISDFTEAIQSNPSAGE-AWKRRGQA----------------------------------------------RAALGE---  464 (676)
Q Consensus       435 ~~~~~~al~~~~~~~~-~~~~la~~----------------------------------------------~~~~g~---  464 (676)
                      ...|++++...+.... .|......                                              -...++   
T Consensus       109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~  188 (493)
T 2uy1_A          109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK  188 (493)
T ss_dssp             HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc
Confidence            8888888875333221 11111100                                              001111   


Q ss_pred             ------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808          465 ------SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (676)
Q Consensus       465 ------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (676)
                            .......|++++...|..+.+|...+..+...|+.+.|...+++++.. |.+...+...+... ..++   ...
T Consensus       189 ~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~  263 (493)
T 2uy1_A          189 LGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYG  263 (493)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHH
T ss_pred             CcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHH
Confidence                  122334555555555555555555555555555555555555555555 55544443332221 0000   000


Q ss_pred             HHHHHHh----------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHH
Q 005808          539 AHLKAIQ----------LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKD  607 (676)
Q Consensus       539 ~~~~al~----------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~  607 (676)
                      .+.....          ..+....+|...+....+.+..+.|...|.++ ...+.....|...|.+....+ +++.|...
T Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence            0000000          00111234455555555555566666666666 322223344544454444444 46666666


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                      |+.+++..|+++..+...+......|+.+.|...|+++
T Consensus       343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666666655555555556666666666665554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.18  E-value=1.8e-10  Score=101.89  Aligned_cols=96  Identities=29%  Similarity=0.337  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CcHH
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSK  586 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~  586 (676)
                      ++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+      ....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            34444555555555555555555544443221      34455555555556666666666555554321      1234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (676)
                      ++..+|.++...|++++|+.+++++++.
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5566666666666666666666666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.07  E-value=2.2e-09  Score=88.83  Aligned_cols=84  Identities=23%  Similarity=0.303  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808           53 SKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE  131 (676)
Q Consensus        53 ~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  131 (676)
                      ..|+..|.++++.+ .++..++++|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36899999999999 56667999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hccCC
Q 005808          132 HALHQ  136 (676)
Q Consensus       132 ~~~~~  136 (676)
                      +.|..
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            87743

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=2e-10  Score=94.48  Aligned_cols=93  Identities=17%  Similarity=0.214  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHH
Q 005808          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYL  624 (676)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  624 (676)
                      ...+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777777776      667777


Q ss_pred             HHHHHHHhccHHHHHHHHH
Q 005808          625 RASCYHAIGEYREAIKDYD  643 (676)
Q Consensus       625 la~~~~~~g~~~~A~~~~~  643 (676)
                      +|.++..+|+++.|+..++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHH
Confidence            7777777776666655444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.02  E-value=2.2e-10  Score=94.12  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR  454 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~  454 (676)
                      +..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            55667777777777777777777777777777777777777777777777777777777777777776      666677


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 005808          455 RGQARAALGESVEAIQDLS  473 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~  473 (676)
                      +|.++...|+++.|+..++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHH
Confidence            7777776666665555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.00  E-value=3.7e-09  Score=87.50  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++++.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             C
Q 005808          650 L  650 (676)
Q Consensus       650 p  650 (676)
                      |
T Consensus        84 ~   84 (115)
T 2kat_A           84 Q   84 (115)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.99  E-value=4e-09  Score=82.87  Aligned_cols=78  Identities=29%  Similarity=0.348  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (676)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (676)
                      .++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+.+|+++++++|++..++..++.++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444444444444444444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.98  E-value=5.8e-09  Score=81.89  Aligned_cols=83  Identities=28%  Similarity=0.382  Sum_probs=56.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      .+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35566666666666777777777777777666666666666666666666666676666666666666666666666666


Q ss_pred             HHc
Q 005808          460 AAL  462 (676)
Q Consensus       460 ~~~  462 (676)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.92  E-value=4e-09  Score=84.71  Aligned_cols=69  Identities=16%  Similarity=0.201  Sum_probs=64.6

Q ss_pred             CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 005808           67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (676)
Q Consensus        67 ~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~  135 (676)
                      .++..++++|.+++.+|+|++|+..++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            456679999999999999999999999999999999999999999999999999999999999877654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.87  E-value=4.5e-09  Score=84.40  Aligned_cols=72  Identities=13%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++++.|..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            455666666666666666666666666666666666666666666666666666666666666666665543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.86  E-value=4.9e-09  Score=84.03  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=59.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q 005808          555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (676)
Q Consensus       555 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (676)
                      +..|.++...|++++|+..++++++.+|.++. +++.+|.++...|++++|+..|+++++.+|+++.++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            34566666666667777777666666666666 66667777777777777777777777666666655533        5


Q ss_pred             cHHHHHHHHHHHHhhCCCc
Q 005808          634 EYREAIKDYDAALDLELDS  652 (676)
Q Consensus       634 ~~~~A~~~~~~al~~~p~~  652 (676)
                      .+.+++..|+++...+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            5666666666666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.83  E-value=6.7e-08  Score=82.66  Aligned_cols=111  Identities=19%  Similarity=0.218  Sum_probs=73.0

Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHH
Q 005808          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIK  606 (676)
Q Consensus       531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~  606 (676)
                      +++++|+.+|+++.+......  .  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            356666666666666543322  2  666666666666677777776654  456667777777766    667777777


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhC
Q 005808          607 DLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLE  649 (676)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  649 (676)
                      +|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77777665  456677777777777    677777777777777653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.83  E-value=4.2e-08  Score=96.16  Aligned_cols=164  Identities=15%  Similarity=0.118  Sum_probs=111.3

Q ss_pred             HHHhcCCCCHHHH--HHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Q 005808          474 KALEFEPNSADIL--HERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (676)
Q Consensus       474 ~al~~~p~~~~~~--~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  548 (676)
                      ++....|.++.+|  +..|..+...+   ...+|+.+|+++++++|++..++..++.++...           ...  .|
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~~~--~~  251 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------HSQ--HP  251 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------HHH--SC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------hcc--CC
Confidence            4445566665543  34455555544   357888888888888888888888877777611           000  11


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005808          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (676)
Q Consensus       549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (676)
                      ........          ...+.... .++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.+
T Consensus       252 ~~~~~~~~----------l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~  319 (372)
T 3ly7_A          252 LDEKQLAA----------LNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV  319 (372)
T ss_dssp             CCHHHHHH----------HHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             CchhhHHH----------HHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            11110000          11222211 233567888889999988888889999999999999999875 7788889999


Q ss_pred             HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808          629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (676)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (676)
                      +...|++++|++.|++|+.++|..+..++...++
T Consensus       320 ~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~  353 (372)
T 3ly7_A          320 YEMKGMNREAADAYLTAFNLRPGANTLYWIENGI  353 (372)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSS
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCce
Confidence            9999999999999999999999886544433333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.83  E-value=6.8e-09  Score=83.16  Aligned_cols=89  Identities=18%  Similarity=0.264  Sum_probs=64.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPE-ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  463 (676)
                      +.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++..+|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45677777778888888888888887887777 77778888888888888888888888777777766533        4


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 005808          464 ESVEAIQDLSKALEFEPN  481 (676)
Q Consensus       464 ~~~~A~~~~~~al~~~p~  481 (676)
                      .+.+++..|+++...+|+
T Consensus        76 ~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHHhccCcc
Confidence            455566666665555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.80  E-value=9.1e-08  Score=81.84  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHH
Q 005808          499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECL  574 (676)
Q Consensus       499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~  574 (676)
                      +++|+.+|+++.+......  .  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|
T Consensus        11 ~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A           11 LKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            4444444444444432221  1  444444444444444444444443  334444445554444    44555555555


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcC
Q 005808          575 QQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGI  614 (676)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  614 (676)
                      +++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.
T Consensus        85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            555443  334455555555555    45555555555555444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.78  E-value=3e-07  Score=86.15  Aligned_cols=106  Identities=18%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             hCCCCHHHHHHHHHHHHH---c--c------cHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 005808          512 LDKENKSAYTYLGLALSS---I--G------EYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDL-----ANSEKALEC  573 (676)
Q Consensus       512 ~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~  573 (676)
                      .+|++++.+++.|.+...   .  |      ....|...++++++++|+  +..+|..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            355666666555554432   1  1      244556666666666666  344666666666653     666666666


Q ss_pred             HHHHHhcCcCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCC
Q 005808          574 LQQVLYIDKRF-SKAYHLRGLLLHG-LGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       574 ~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~  617 (676)
                      |+++++++|+. ...++.+|..+.. .|++++|..++++++...|.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            66666666643 5666666666555 36666666666666665544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.77  E-value=5.5e-08  Score=101.58  Aligned_cols=121  Identities=14%  Similarity=0.119  Sum_probs=71.3

Q ss_pred             HcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCcHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRG  592 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la  592 (676)
                      .+|++++|+..+++++++        +|.....+.++|.+|..+|+|++|+.++++++..        .|+....+.++|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            444444554444444433        1222445555666666666666666666665543        223334566677


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcC-----CCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          593 LLLHGLGQHKKAIKDLSSGLGI-----DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      .+|..+|++++|+..|++++.+     .|+++   +....++.++..+|.+++|...|.++.+..
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777776653     44544   445667777777777777777777776543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.76  E-value=2.7e-07  Score=90.52  Aligned_cols=147  Identities=14%  Similarity=0.153  Sum_probs=80.9

Q ss_pred             cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  456 (676)
                      .+..++.+|..++..++   +.+|+.+|+++++.+|+++.++..++.++.....+             .|........  
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~~~--  259 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQLAA--  259 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHHHH--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhHHH--
Confidence            34456677777776654   47888888888888888888888877777621110             0111100000  


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 005808          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (676)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (676)
                              ...+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|
T Consensus       260 --------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA  329 (372)
T 3ly7_A          260 --------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA  329 (372)
T ss_dssp             --------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred             --------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence                    0111110 1122344555555555555555556666666666666655543 44455555666666666666


Q ss_pred             HHHHHHHHhcCcccH
Q 005808          537 EEAHLKAIQLDRNFL  551 (676)
Q Consensus       537 ~~~~~~al~~~p~~~  551 (676)
                      ++.|.+++.++|..+
T Consensus       330 ~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          330 ADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHhcCCCcC
Confidence            666666666655543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.73  E-value=5.9e-07  Score=84.18  Aligned_cols=109  Identities=17%  Similarity=0.035  Sum_probs=91.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----ccHHHHH
Q 005808          476 LEFEPNSADILHERGIVNFK-----FK------DFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSI-----GEYKKAE  537 (676)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~  537 (676)
                      ...+|++++.++..|.+...     .|      ....|...++++++++|+  +..+|..+|.+|...     |+.++|.
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            34577888877776665532     12      357889999999999999  667999999999995     9999999


Q ss_pred             HHHHHHHhcCccc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcCc
Q 005808          538 EAHLKAIQLDRNF-LEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRF  584 (676)
Q Consensus       538 ~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~  584 (676)
                      .+|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|..
T Consensus       225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999999999975 9999999999988 499999999999999988763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.65  E-value=1.6e-07  Score=98.10  Aligned_cols=120  Identities=10%  Similarity=-0.034  Sum_probs=68.9

Q ss_pred             HhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHH
Q 005808          494 FKFKDFNAAVEDLSACVKL-----DKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHL  557 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l  557 (676)
                      ..+|+|++|+..+++++.+     .|++   ...+.++|.+|..+|+|++|+.++++++++        .|.-...+.++
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3445555555555554443     2222   234455555555555555555555555543        23334556666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc-----CcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808          558 TQFYQDLANSEKALECLQQVLYI-----DKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       558 a~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (676)
                      |.+|..+|++++|+.++++++.+     .|++   ......++.++..++.+++|...|.++.+
T Consensus       400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777766643     3333   34456677777777777777777776643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.54  E-value=5.3e-07  Score=76.18  Aligned_cols=95  Identities=17%  Similarity=0.022  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCC-C-CCHHHHHHHHHHHHHhccHHHHHHH
Q 005808          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIKD  641 (676)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  641 (676)
                      ...+.+.|.+.+..++.+..+.+.+|+++.+.+   +.++++..++..++.+ | ++.++++.+|..+.++|+|++|+++
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            345566666666667777788888888888877   5568888888888777 6 4567888888888888888888888


Q ss_pred             HHHHHhhCCCcHHHHHHHHH
Q 005808          642 YDAALDLELDSMEKFVLQCL  661 (676)
Q Consensus       642 ~~~al~~~p~~~~~~~~~~~  661 (676)
                      ++++++++|++..+......
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHH
Confidence            88888888888776554433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.48  E-value=1.8e-06  Score=88.58  Aligned_cols=93  Identities=8%  Similarity=-0.039  Sum_probs=78.4

Q ss_pred             HhcCCHHHHHHHHHHHHccc-----CChhH----HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CCC---hhHHHHH
Q 005808           47 CSLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTL---LQAYILK  109 (676)
Q Consensus        47 ~~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~~  109 (676)
                      -..|+|++|+..|.+++++.     +++..    +.|+|.+|..+|+|++|+..++++|++.     |++   +..+..+
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            35689999999999998753     44444    7899999999999999999999999774     444   4489999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhh-----ccCChHH
Q 005808          110 GCAFSALGRKEEALSVWEKGYEH-----ALHQSAD  139 (676)
Q Consensus       110 g~~~~~l~~~~~A~~~~~~al~~-----~~~~~~~  139 (676)
                      |.+|..+|++++|+..|++|+++     .|++|..
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            99999999999999999999876     4565533

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.48  E-value=5.3e-07  Score=70.46  Aligned_cols=71  Identities=20%  Similarity=0.125  Sum_probs=43.7

Q ss_pred             CcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          581 DKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                      +|+++..+..+|.++...++   .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35556666666666654443   466666666666666666666666666666666666666666666666665

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.47  E-value=1.1e-06  Score=68.71  Aligned_cols=69  Identities=14%  Similarity=0.069  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005808          412 PMYPEALIGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP  480 (676)
Q Consensus       412 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  480 (676)
                      |+++..+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3334444444444433322   33444444444444444444444444444444444444444444444433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.46  E-value=1.5e-06  Score=89.43  Aligned_cols=100  Identities=8%  Similarity=0.020  Sum_probs=84.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHccc-----CChhH----HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CCChh--
Q 005808           41 IELAKLCSLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTLLQ--  104 (676)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~~~-----p~~~~--  104 (676)
                      ..+.++..+|+|++|+..|.+++++.     +++..    +.|+|.+|..+|+|++|+..++++|++.     |+++.  
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            34567789999999999999999763     44443    7899999999999999999999999765     55544  


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHHH
Q 005808          105 -AYILKGCAFSALGRKEEALSVWEKGYEH-----ALHQSADL  140 (676)
Q Consensus       105 -a~~~~g~~~~~l~~~~~A~~~~~~al~~-----~~~~~~~~  140 (676)
                       .++.+|.+|..+|++++|+..|++|+++     .|++|...
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence             8999999999999999999999999876     56776553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=3.2e-06  Score=71.43  Aligned_cols=85  Identities=11%  Similarity=0.050  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          401 ISIFDQILKEDPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSN-P-SAGEAWKRRGQARAALGESVEAIQDLSKA  475 (676)
Q Consensus       401 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (676)
                      .+.|.+.+..+|.+.++.+.+|+++.+.+   +.++++..++.+++.+ | ...++++.+|..+++.|+|++|+.+++++
T Consensus        18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            33444444444444555555555555544   3445555555555544 3 23445555555555555555555555555


Q ss_pred             HhcCCCCHHH
Q 005808          476 LEFEPNSADI  485 (676)
Q Consensus       476 l~~~p~~~~~  485 (676)
                      ++..|++..+
T Consensus        98 L~ieP~n~QA  107 (152)
T 1pc2_A           98 LQTEPQNNQA  107 (152)
T ss_dssp             HHHCTTCHHH
T ss_pred             HhcCCCCHHH
Confidence            5555544443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.38  E-value=3e-06  Score=68.12  Aligned_cols=75  Identities=9%  Similarity=-0.069  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHH
Q 005808          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL  658 (676)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  658 (676)
                      .-.+.+|..++..|+|..|+.+|+.+++..       +..+.++..+|.++.++|+++.|+.+++++++++|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            345566666666666666666666665532       2345666777777777777777777777777777777666444


Q ss_pred             HH
Q 005808          659 QC  660 (676)
Q Consensus       659 ~~  660 (676)
                      +.
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.33  E-value=5.7e-06  Score=66.43  Aligned_cols=78  Identities=15%  Similarity=0.050  Sum_probs=59.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (676)
                      .++..++.+|..++..|+|..|+..|+.+++..       +..+.++..+|.+++..|+++.|+.++++++.+.|++..+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            356777888888888888888888888888752       2346677778888888888888888888888888877777


Q ss_pred             HHHHH
Q 005808          452 WKRRG  456 (676)
Q Consensus       452 ~~~la  456 (676)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            66655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.29  E-value=0.00014  Score=76.48  Aligned_cols=114  Identities=11%  Similarity=-0.015  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808          533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       533 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (676)
                      .++|...|+++.... +-+..+|..+...|.+.|+.++|..+|++..+.. ..+...|..+-..|.+.|+.++|..+|++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            344444444444331 1124444455555555555555555555444321 11244444555555555555555555555


Q ss_pred             hhcC--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          611 GLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       611 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      ..+.  .|+ ...|..+...+.+.|+.++|...+++..+
T Consensus       166 M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          166 MVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            4432  222 44455555555555555555555555443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.17  E-value=0.00019  Score=75.43  Aligned_cols=178  Identities=10%  Similarity=0.046  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhcC-CCCHHH
Q 005808          417 ALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGE---------SVEAIQDLSKALEFE-PNSADI  485 (676)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~  485 (676)
                      .+..+-..+.+.|+.++|+..|+++.... +-+...|..+..++...+.         .+.|..+|+++.... +.+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            35555677788899999999999887753 2245556666666654443         678888888887653 236778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Q 005808          486 LHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQD  563 (676)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  563 (676)
                      |..+...|.+.|++++|..+++++.... ..+...|..+...+.+.|+.++|.+.++++.+.. .-+...|..+...+.+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            8888889999999999999998887653 3357778888888889999999999998887653 2246778888888999


Q ss_pred             cCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHH
Q 005808          564 LANSEKALECLQQVLYI--DKRFSKAYHLRGLLL  595 (676)
Q Consensus       564 ~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~  595 (676)
                      .|+.++|.+++++..+.  .|+ ...+..+-..+
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F  220 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF  220 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            99999999999887654  343 34444443333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.13  E-value=1.3e-05  Score=82.26  Aligned_cols=85  Identities=15%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             hcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHH
Q 005808          495 KFKDFNAAVEDLSACVKL-----DKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLT  558 (676)
Q Consensus       495 ~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la  558 (676)
                      ..|+|++|+..+++++.+     .|+++   ..+.++|.+|..+|+|++|+.++++++.+        .|+-...++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            456777777777777664     34443   34556666666666666666666666654        222344455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh
Q 005808          559 QFYQDLANSEKALECLQQVLY  579 (676)
Q Consensus       559 ~~~~~~~~~~~A~~~~~~al~  579 (676)
                      .+|..+|++++|+.+|+++++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            556556666666555555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.10  E-value=2e-05  Score=81.02  Aligned_cols=85  Identities=14%  Similarity=0.008  Sum_probs=41.2

Q ss_pred             HcccHHHHHHHHHHHHhc-----Ccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCcHHHHHHHH
Q 005808          529 SIGEYKKAEEAHLKAIQL-----DRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRG  592 (676)
Q Consensus       529 ~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la  592 (676)
                      ..|++++|+..+++++++     .|+   ....+.++|.+|..+|+|++|+.++++++..        .|.....++++|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            344455555555554433     112   2334455555555555555555555555432        122233455555


Q ss_pred             HHHHHcCCHHHHHHHHHHhhc
Q 005808          593 LLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~  613 (676)
                      .+|..+|++++|+.+|+++++
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHH
Confidence            555555555555555555554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.06  E-value=4.9e-05  Score=61.66  Aligned_cols=96  Identities=16%  Similarity=0.008  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH---HHHHHHHhhcCC-C-CCHHHHHHHHHHHHHhccHHHHHHH
Q 005808          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK---AIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIKD  641 (676)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  641 (676)
                      ...+...|.+....++....+.+.+|+++.+..+...   ++..++..+... | ..-+.++.+|..++++|+|.+|..+
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4455566666666666778888888888888887766   888888888876 4 4557888899999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHH
Q 005808          642 YDAALDLELDSMEKFVLQCLA  662 (676)
Q Consensus       642 ~~~al~~~p~~~~~~~~~~~~  662 (676)
                      ++.+++..|++..+......+
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHH
Confidence            999999999988876544443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.84  E-value=0.00037  Score=57.59  Aligned_cols=53  Identities=15%  Similarity=0.048  Sum_probs=22.5

Q ss_pred             CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (676)
                      ++.++|.+.|+.++..+...+.+|...|..-.++|+...|.+.+.+++...|.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            44444444444444333333444444444444444444444444444444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.81  E-value=0.00038  Score=56.44  Aligned_cols=96  Identities=14%  Similarity=-0.006  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-c-CcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK---ALECLQQVLYID-K-RFSKAYHLRGLLLHGLGQHKKAIKD  607 (676)
Q Consensus       533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~  607 (676)
                      ...+...|.+....++....+.+.+|+++....+...   ++.+++..+... | ..-+..+.+|..+.+.|+|.+|+.+
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3344444555555455556666666666665555444   666666665554 3 3445666666666666666666666


Q ss_pred             HHHhhcCCCCCHHHHHHHHHH
Q 005808          608 LSSGLGIDPSNIECLYLRASC  628 (676)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~  628 (676)
                      ++..++..|++..+......+
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHH
Confidence            666666666666555544433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.77  E-value=0.00065  Score=56.18  Aligned_cols=108  Identities=14%  Similarity=-0.015  Sum_probs=70.2

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          478 FEPNSADILHERGIVNFKFKDF------NAAVEDLSACVKLDKEN--------KSAYTYLGLALSSIGEYKKAEEAHLKA  543 (676)
Q Consensus       478 ~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (676)
                      +.|++++.|..........|+.      +.-++.|++++..-|..        ...|...+.. ...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            3566666666666666666666      56666666666655432        2344444543 4457777777777777


Q ss_pred             HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH
Q 005808          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK  586 (676)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  586 (676)
                      +......+.+|...|....++|+...|...+.+++...|....
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            7776666777777777777788888888888888777776433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.67  E-value=0.00035  Score=59.25  Aligned_cols=88  Identities=11%  Similarity=0.080  Sum_probs=72.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc-CChh---------HHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC-------
Q 005808           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQ---------DICNRAFCYSQLELHKHVIRDCDKALQLD---PT-------  101 (676)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~---------~~~~ra~~~~~~g~~~~A~~~~~~al~~~---p~-------  101 (676)
                      ...+++..|.|+.|+-..+.++... .++.         .+...|.+++..|+|..|+..|++||+..   |+       
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            5567899999999999999987765 2222         46899999999999999999999997554   11       


Q ss_pred             ---------------ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          102 ---------------LLQAYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus       102 ---------------~~~a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                                     .++..|+++.||.+++++++|+..++.+
T Consensus       106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                           2268899999999999999999887765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.55  E-value=0.00059  Score=57.89  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---Cc
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNP---SA  448 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~  448 (676)
                      -..++.....++..|.|+.|+.....++...   |+-      ..++..+|.+++..|+|..|...|+++++...   ..
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456777888999999999999998877643   331      34789999999999999999999999986522   22


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (676)
                      ......++.    ...+..       ... .+.+.++.+.++.||...+++++|+..++.+-.. ...+.+...+|..|
T Consensus       100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence            111100100    000000       011 1335567777888888888888888777653222 23455666666554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.39  E-value=0.0015  Score=53.10  Aligned_cols=79  Identities=19%  Similarity=0.145  Sum_probs=51.9

Q ss_pred             cHHHHHHHHHHHHHcCCH---HHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          584 FSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       584 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      .+.+.+++|+++.+..+.   .+++..++..++..|. .-+.++.+|..+.++|+|++|.++.+.++++.|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            356667777777766543   3566677776666663 346677777777777777777777777777777776665444


Q ss_pred             HHH
Q 005808          660 CLA  662 (676)
Q Consensus       660 ~~~  662 (676)
                      ..+
T Consensus       119 ~~I  121 (134)
T 3o48_A          119 SMV  121 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.24  E-value=0.0054  Score=50.46  Aligned_cols=81  Identities=19%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             cCcHHHHHHHHHHHHHcCCH---HHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808          582 KRFSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       582 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (676)
                      .-.+.+.+++|+++.+..+.   .+++..++..+...|. .-+.++.+|..+.++|+|.+|.++.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            34577888888888887754   4678888888887774 4578888888888888888888888888888888887755


Q ss_pred             HHHHH
Q 005808          658 LQCLA  662 (676)
Q Consensus       658 ~~~~~  662 (676)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.06  E-value=0.012  Score=47.81  Aligned_cols=83  Identities=11%  Similarity=0.047  Sum_probs=67.3

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH
Q 005808          376 SKSISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (676)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (676)
                      ....+++..|..|+++....+.   .+++.+++.+++.+|. .-+.++.+|..+++.|+|++|+.+.+.+++..|++..+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            4556788999999999887654   5688999999888884 47888999999999999999999999999999998776


Q ss_pred             HHHHHHH
Q 005808          452 WKRRGQA  458 (676)
Q Consensus       452 ~~~la~~  458 (676)
                      ......+
T Consensus       115 ~~Lk~~I  121 (134)
T 3o48_A          115 GALKSMV  121 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.90  E-value=0.013  Score=48.19  Aligned_cols=80  Identities=11%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      ..+++..|..|+++....+.   .+++.+++.++...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            57788999999999887654   4788899999988884 4678899999999999999999999999999999877665


Q ss_pred             HHHH
Q 005808          454 RRGQ  457 (676)
Q Consensus       454 ~la~  457 (676)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.85  E-value=0.36  Score=51.54  Aligned_cols=124  Identities=12%  Similarity=-0.028  Sum_probs=82.7

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (676)
                      ++.......+.+.|...+.......+-+.    ..+..++.-....+...++...+.+......++.. ...++...+..
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~  298 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT  298 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence            34444555678888888877654322221    22233343344445466777777776654444333 33333445567


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      |++..|..+|...-..........+.+|.++..+|+.++|..+|+++..
T Consensus       299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            9999999999887665556688899999999999999999999999876

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.41  E-value=0.35  Score=40.68  Aligned_cols=57  Identities=12%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (676)
                      ++..+.++..++..|.|..++-++..     -+...+.+..+.|+....++..|+..++..+
T Consensus        33 ~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il   89 (242)
T 3kae_A           33 PEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESIL   89 (242)
T ss_dssp             -CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666655432     2345556666666666666666666666666

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.40  E-value=0.087  Score=52.56  Aligned_cols=187  Identities=14%  Similarity=0.064  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHH----
Q 005808          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD-----ILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKS----  518 (676)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~----  518 (676)
                      ..+...+|.+|...|++++-..++.......+.-+.     ....+-..+.. .+..+.-++.+..+++-..+...    
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788999999999999988888776555433322     22233333333 34455555666666554322211    


Q ss_pred             --HHHHHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCc---
Q 005808          519 --AYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYID---KRF---  584 (676)
Q Consensus       519 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~---  584 (676)
                        .-..+|..|...|+|.+|...+.+..+...      .-.+++.....+|...+++.++...+.++....   +.+   
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence              223578888888888888777777665321      124566667777788888888888887775432   111   


Q ss_pred             -HHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHHhccH
Q 005808          585 -SKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPS-----NIECLYLRASCYHAIGEY  635 (676)
Q Consensus       585 -~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~  635 (676)
                       +.....-|.++. ..++|..|...|-.++.....     ...+...++.+-...++.
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence             233445577777 788888888877777643221     123444555555555554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.32  E-value=1  Score=44.92  Aligned_cols=229  Identities=10%  Similarity=-0.076  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHH-cccHHHHHHHHHHHHHhCCCc----HH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-----IGRGTARAF-QRELEAAISDFTEAIQSNPSA----GE  450 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~~~~----~~  450 (676)
                      -.+.+.+|..|...|++++-..++......-+.-+.+.     ..+-..+.. .+..+.-++.+..+++...+.    ..
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999998887654433332222     122222221 234444455555555432222    12


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCH--
Q 005808          451 --AWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHERGIVNFKFKDFNAAVEDLSACVKLD---KENK--  517 (676)
Q Consensus       451 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~--  517 (676)
                        .-..+|..|+..|+|.+|...+.+..+....  +    .+++.....+|...+++.++...+.++....   +.++  
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence              2337899999999999999988888764221  1    4567777888999999999999998886542   2233  


Q ss_pred             --HHHHHHHHHHH-HcccHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHH-H-HHhc-CcCcHH
Q 005808          518 --SAYTYLGLALS-SIGEYKKAEEAHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQ-Q-VLYI-DKRFSK  586 (676)
Q Consensus       518 --~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~-~-al~~-~~~~~~  586 (676)
                        .....-|..+. ..++|..|...|-+++....     ....+...++.+-...++..+-...+. + .... .|. ..
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pe-i~  257 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRD-ID  257 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHH-HH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCcc-HH
Confidence              33445677888 89999999999888875432     122344445555555555322222211 1 1111 221 22


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808          587 AYHLRGLLLHGLGQHKKAIKDLSSG  611 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~a  611 (676)
                      .+..+..+ +..+++.+-...+...
T Consensus       258 ~l~~L~~a-~~~~dl~~f~~iL~~~  281 (394)
T 3txn_A          258 AMKSVAEA-SHKRSLADFQAALKEY  281 (394)
T ss_dssp             HHHHHHHH-HHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHH-HHhCCHHHHHHHHHHH
Confidence            33444443 4456676555555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.042  Score=59.67  Aligned_cols=116  Identities=10%  Similarity=-0.046  Sum_probs=59.0

Q ss_pred             hcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--H-cccHHHHHHHHHHHHhc--------Cccc----------HH
Q 005808          495 KFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALS--S-IGEYKKAEEAHLKAIQL--------DRNF----------LE  552 (676)
Q Consensus       495 ~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~--------~p~~----------~~  552 (676)
                      ..++ ++.|+..+++....+|.....+ ..+.+..  . ..+--+|+..+.+.++.        .+.+          ..
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3444 5778888888888877654322 2222211  1 23344566666666532        1111          12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (676)
                      .+...+..+...|+++-|+.+.+++....|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            23333444444555555555555555555555555555555555555555555444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.08  E-value=0.4  Score=53.75  Aligned_cols=100  Identities=14%  Similarity=0.066  Sum_probs=66.7

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005808          389 IAQVNEGKYASAIS-IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (676)
Q Consensus       389 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  467 (676)
                      ......+++++|.. ++..    -|+ ......++..+...|.++.|+...+        ++...   .......|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence            34456889998876 4411    110 1222556667777888888776542        22222   234567889998


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (676)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (676)
                      |.+..+.     .+++..|..+|..+...++++.|..+|.++
T Consensus       671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            8887532     356788999999999999999999888875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.12  Score=56.12  Aligned_cols=116  Identities=14%  Similarity=0.069  Sum_probs=87.1

Q ss_pred             HcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHH--H-hcCCHHHHHHHHHHHHHh--------CCCC----------HH
Q 005808          461 ALGE-SVEAIQDLSKALEFEPNSADILHERGIVN--F-KFKDFNAAVEDLSACVKL--------DKEN----------KS  518 (676)
Q Consensus       461 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~--~-~~~~~~~A~~~~~~al~~--------~~~~----------~~  518 (676)
                      ..++ ++.|+..+++....+|..... +..+.+.  . ...+--+|++.+.+.++.        .+.+          ..
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3455 588999999999998865432 2222222  1 223456788888887742        2222          23


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (676)
                      .+...+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45556788888999999999999999999999999999999999999999999776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.50  E-value=0.53  Score=52.72  Aligned_cols=99  Identities=18%  Similarity=0.106  Sum_probs=69.0

Q ss_pred             HHHHcccHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005808          424 ARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (676)
Q Consensus       424 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  502 (676)
                      .....+++++|.. .+.    .-|+ ......+...+...|.++.|+...+        ++...   .......|+++.|
T Consensus       608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A  671 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLA  671 (814)
T ss_dssp             HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHH
Confidence            3346788888866 431    1110 1222566777888899888886552        33322   3345678999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (676)
Q Consensus       503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (676)
                      .+..+.     .++...|..+|..+...++++.|+.+|.++
T Consensus       672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            887643     367889999999999999999999999875

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.12  E-value=3.4  Score=42.21  Aligned_cols=184  Identities=8%  Similarity=-0.051  Sum_probs=84.3

Q ss_pred             cccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----hcC
Q 005808          428 QRELEAAISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF----KFK  497 (676)
Q Consensus       428 ~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~~  497 (676)
                      .|+++.|++.+....+.      .+....+...+..++...|+|+...+++.-..........+...+.....    ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            37778887766544332      12335666777777788888877766665544433332222222211111    111


Q ss_pred             CHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----c--ccHHHHHHHHHH
Q 005808          498 DFNAAVEDLSACVKLD----KE-------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----R--NFLEAWGHLTQF  560 (676)
Q Consensus       498 ~~~~A~~~~~~al~~~----~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~  560 (676)
                      ..+.  ......+..-    .+       .......++.++...|++.+|...+.....-.    +  .-.+.+....++
T Consensus       109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            1111  0011111110    00       12233445555566666666655555543211    0  113444555555


Q ss_pred             HHHcCCHHHHHHHHHHHHh---cCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808          561 YQDLANSEKALECLQQVLY---IDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (676)
Q Consensus       561 ~~~~~~~~~A~~~~~~al~---~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (676)
                      +...+++..|...+.++..   ..+..    ...+...|.++...++|.+|-.+|..++.
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            5555555555555555421   11111    12344455555555555555555555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.00  E-value=1.9  Score=44.10  Aligned_cols=185  Identities=12%  Similarity=-0.014  Sum_probs=112.1

Q ss_pred             cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHcC
Q 005808          394 EGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AALG  463 (676)
Q Consensus       394 ~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~g  463 (676)
                      .|++++|++.+....+.      .+....+...+..++...|+++...+++.-..........+...+....    ....
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            36777787776554432      2334677777888888888888877766554443333322222222111    1112


Q ss_pred             CHHHHHHHHHHHHhc----CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHH
Q 005808          464 ESVEAIQDLSKALEF----EPN-------SADILHERGIVNFKFKDFNAAVEDLSACVKLDK--EN----KSAYTYLGLA  526 (676)
Q Consensus       464 ~~~~A~~~~~~al~~----~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~----~~~~~~la~~  526 (676)
                      ..+...  ....+..    ...       ...+...++.++...|++.+|...+.....-.-  .+    .+.+.....+
T Consensus       109 ~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            222111  1111111    111       234557788899999999999988888754211  11    3567777888


Q ss_pred             HHHcccHHHHHHHHHHHHhc---Cccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          527 LSSIGEYKKAEEAHLKAIQL---DRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (676)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (676)
                      +...+++.+|...++++...   .+..    ...+...|.++...++|.+|-.+|..++..
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            88899999998888886421   1222    345677888888899999998888888754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.81  E-value=1.6  Score=36.83  Aligned_cols=189  Identities=14%  Similarity=0.028  Sum_probs=91.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--C----------
Q 005808          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--D----------  513 (676)
Q Consensus       446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~----------  513 (676)
                      |..++....++..+.-.|.+..++-++..     -+.....+..+.+|....++..|+..++..+.-  +          
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            44445555666677777777776665532     234555566667777777777777777777622  1          


Q ss_pred             -----CCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCcH-
Q 005808          514 -----KENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFS-  585 (676)
Q Consensus       514 -----~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~-  585 (676)
                           |.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+-..+-.--. ..-+.+.       ++..+.... 
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~-------i~~~~~~~i~  177 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKEN-------VRQTGRRGIE  177 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------------CHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHH-------HHhhhhccch
Confidence                 22222 33445666666666666666666666555543322211100000 0000000       000000000 


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          586 -KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-CLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       586 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                       ..+......+.....     ...++....-|.-.. .-...+..|+.+|-.++...+|...-..+|.
T Consensus       178 ~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          178 EEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence             001111111111111     333444445565332 2234667788899999999999988888885

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.72  E-value=0.44  Score=47.90  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=78.8

Q ss_pred             hhhhhHHHHHHHH-HHHHhcCCHHHHHHHHHHHHccc-----CChh------H------------HHHHHHHHHHhhCHH
Q 005808           31 SVMASAITARIEL-AKLCSLRNWSKAIRILDSLLAQS-----YEIQ------D------------ICNRAFCYSQLELHK   86 (676)
Q Consensus        31 ~~~~~~~~~~~~~-~~~~~~~~y~~Ai~~y~~ai~~~-----~~~~------~------------~~~ra~~~~~~g~~~   86 (676)
                      .++.......... ......|+...|+..+.+|+.+.     ++..      .            ...++.+++..|++.
T Consensus       109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~  188 (388)
T 2ff4_A          109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS  188 (388)
T ss_dssp             GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            4455444444333 33566899999999999999875     1110      0            124566788999999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808           87 HVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (676)
Q Consensus        87 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  130 (676)
                      +|+..+..++..+|-+-.+|..+-.+|...|+..+|+..|++.-
T Consensus       189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999873

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.65  E-value=0.89  Score=39.24  Aligned_cols=44  Identities=11%  Similarity=-0.040  Sum_probs=21.6

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (676)
                      ...|+++.|.+..+..     ++...|..+|......|+++-|..+|.+
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3445555555544433     3344555555555555555555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.30  E-value=1.3  Score=38.14  Aligned_cols=108  Identities=8%  Similarity=-0.035  Sum_probs=58.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      +++..|.+|   +..|+++.|.++.+.+     ++...|..+|......|+++-|..+|.++-.        +..+..+|
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY   70 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence            345555544   4567777777776654     4566777777777777777777777766421        12334445


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (676)
                      ...|+.+.-....+.+.....     +.....+++..|+++++++.+.+
T Consensus        71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555444433333322221     11222334455666666555543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.14  E-value=0.71  Score=46.38  Aligned_cols=115  Identities=12%  Similarity=0.074  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA-AISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (676)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~  462 (676)
                      +...|......|+.+.|...+.+++......+-.-.  .     ...+-. ....++..      ...+...++..+...
T Consensus       118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~  184 (388)
T 2ff4_A          118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVED------KVLAHTAKAEAEIAC  184 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHC
Confidence            344455556678999999999999987543211000  0     001111 01111111      112344577778888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (676)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (676)
                      |++.+++..+..++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus       185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999998888999999999999999999988888754

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.54  E-value=9.1  Score=40.75  Aligned_cols=185  Identities=8%  Similarity=-0.113  Sum_probs=109.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005808          456 GQARAALGESVEAIQDLSKALEFEPNSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  531 (676)
                      +.......+.+.|...+.......+-+..    .+..++.-....+...++...+.+......+ ......++......|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCC
Confidence            33344455778888887776543332322    2223333334445355666666665544333 333333444455678


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------cC-c---
Q 005808          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-----------------------KR-F---  584 (676)
Q Consensus       532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------~~-~---  584 (676)
                      +++.|..++..+-...+......+.+|.++...|+.++|..+|.++....                       +. .   
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~  379 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSAL  379 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHH
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhh
Confidence            88888888877655444557778888888888888888888888775421                       00 0   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808          585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD  643 (676)
Q Consensus       585 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  643 (676)
                       ...-...+..+...|....|...+.......  ++.-...++.+....|.+..++....
T Consensus       380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~  437 (618)
T 1qsa_A          380 TQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI  437 (618)
T ss_dssp             HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence             0112345566777788888877777766542  23444566777777777776665443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.08  E-value=3.4  Score=38.22  Aligned_cols=61  Identities=15%  Similarity=0.164  Sum_probs=47.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH
Q 005808          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (676)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (676)
                      .++..|+.++|+..+...++.+|.++.....+..+++-.|+++.|..-++.+.+++|....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            4566777888888888888888888888777888888888888888888888887776643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.98  E-value=2.9  Score=38.69  Aligned_cols=58  Identities=19%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (676)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  550 (676)
                      +++.|+.++|+..+...++.+|.+......+...++-.|++++|...++.+.+++|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            3445555555555555555555555555555555555555555555555555555554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.89  E-value=1.9  Score=48.22  Aligned_cols=97  Identities=7%  Similarity=-0.155  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCcHHHHHHHH
Q 005808          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL----DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRG  592 (676)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la  592 (676)
                      ..+..+...+.+.|+.++|...|..+.+.    ..-+...|+.+...|.+.|+.++|.++|++..+.. .-+...|..+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            45667777788888888888887665432    22346777777788888888888888888776542 12456677777


Q ss_pred             HHHHHcCC-HHHHHHHHHHhhcC
Q 005808          593 LLLHGLGQ-HKKAIKDLSSGLGI  614 (676)
Q Consensus       593 ~~~~~~g~-~~~A~~~~~~al~~  614 (676)
                      .++.+.|+ .++|..+|+++...
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHc
Confidence            77777776 46777777777654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.63  E-value=2.1  Score=47.87  Aligned_cols=99  Identities=8%  Similarity=-0.133  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHER  489 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  489 (676)
                      ...+..+...+.+.|+.++|...|......    ..-+...|..+...+.+.|+.++|.++|+++.... ..+...|..+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            346778888889999999999998765432    23466778888888999999999999999887653 2366778888


Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHHhC
Q 005808          490 GIVNFKFKD-FNAAVEDLSACVKLD  513 (676)
Q Consensus       490 a~~~~~~~~-~~~A~~~~~~al~~~  513 (676)
                      ...+.+.|+ .++|.++++++....
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            888888887 478888998888764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.79  E-value=0.92  Score=46.83  Aligned_cols=81  Identities=10%  Similarity=-0.034  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      ...+..+|........+..|..+|.++....|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999998877667888888877664


Q ss_pred             H
Q 005808          461 A  461 (676)
Q Consensus       461 ~  461 (676)
                      .
T Consensus       232 ~  232 (497)
T 1ya0_A          232 K  232 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.45  E-value=1.4  Score=45.58  Aligned_cols=80  Identities=14%  Similarity=0.020  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q 005808          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (676)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (676)
                      ..+..+|.+......+..|..+|.+|..+.|.+...++.+|.+....|+.-+|+-+|.+++......+.+..++..++.+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35667888888888999999999999999999999999999999999999999999999998877788888888877754

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=91.42  E-value=1.4  Score=35.68  Aligned_cols=102  Identities=10%  Similarity=0.083  Sum_probs=72.1

Q ss_pred             hhhcccchhhhhhhhhHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcccCChhHHHHHHH-HHHHhhCHHHHHHHHHHH
Q 005808           20 ICEIDELVRVDSVMASAITARIELAKLC---SLRNWSKAIRILDSLLAQSYEIQDICNRAF-CYSQLELHKHVIRDCDKA   95 (676)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~-~~~~~g~~~~A~~~~~~a   95 (676)
                      ||+++|-..++-+-    .--....+.|   ..|+..+-+.||-+.-..    .-|.++|. ....+|+-++=-+.+...
T Consensus        46 ICNiiD~a~C~y~v----~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~----se~vd~ALd~lv~~~KkDqLdki~~~~  117 (172)
T 1wy6_A           46 ICNLLESIDCRYMF----QVLDKIGSYFDLDKCQNLKSVVECGVINNTL----NEHVNKALDILVIQGKRDKLEEIGREI  117 (172)
T ss_dssp             HHHHHHHCCHHHHH----HHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC----CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eeecchhhchhHHH----HHHHHHhhhcCcHhhhcHHHHHHHHHHhcch----HHHHHHHHHHHHHhccHhHHHHHHHHH
Confidence            67777766655441    1112224445   578999999999863222    23788888 556667776666666665


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus        96 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                      +.-+|-.+..++.+|.+|.++|+..+|...+.+|
T Consensus       118 l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A          118 LKNNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            6667778999999999999999999999999999

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.72  E-value=6.7  Score=43.60  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808          106 YILKGCAFSALGRKEEALSVWEKGY  130 (676)
Q Consensus       106 ~~~~g~~~~~l~~~~~A~~~~~~al  130 (676)
                      |+....|+..+++.+.+.+.|.+..
T Consensus       233 y~~a~~~ai~LnD~~li~~if~~l~  257 (963)
T 4ady_A          233 YLTLNKVVVNLNDAGLALQLFKKLK  257 (963)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456778888999999998888875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.42  E-value=5.1  Score=46.61  Aligned_cols=142  Identities=13%  Similarity=-0.017  Sum_probs=87.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------
Q 005808          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------------------  445 (676)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------  445 (676)
                      .+...+...+.++-+..    .+...|.++..-+.+|.++...|++++|..+|.++...-                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34455666677665544    334567777777888999999999999988887763210                    


Q ss_pred             ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808          446 ---PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSA----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (676)
Q Consensus       446 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (676)
                         ...+..|..+..++...|.++.+++....+++..+ ++.    ..|..+-..+...|+|++|...+...-.. ....
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~  971 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK  971 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence               01123455566677777888888888887776643 222    24566667777788888887766543221 2223


Q ss_pred             HHHHHHHHHHHHccc
Q 005808          518 SAYTYLGLALSSIGE  532 (676)
Q Consensus       518 ~~~~~la~~~~~~g~  532 (676)
                      ..+..+...++..|.
T Consensus       972 ~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          972 SCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            444444444444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.33  E-value=1.2  Score=45.44  Aligned_cols=64  Identities=8%  Similarity=0.004  Sum_probs=42.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (676)
                      -...+..+|..++..|+++.|.+.|.++......   -.+.++....++...+++..+..++.++..
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~  196 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS  196 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4456777888888888888888888777654322   245666666666666777777666666543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.26  E-value=1.7  Score=44.34  Aligned_cols=101  Identities=11%  Similarity=0.033  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCH----H
Q 005808          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNP---SAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSA----D  484 (676)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~  484 (676)
                      ...++..+|..+...|+++.|.+.|.++.....   .-.+.+....+++...+++..+...+.++.....  .++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            456788999999999999999999999887543   3367888899999999999999999999865421  222    2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005808          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (676)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~  514 (676)
                      .....|.++...++|..|...|..++....
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            445668888899999999999998876643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.87  E-value=1  Score=46.11  Aligned_cols=62  Identities=11%  Similarity=-0.049  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (676)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  582 (676)
                      .+..+-+.|...+.++.|..+..++.  .|..       ...++.+|.++.-+++|.+|.+++..++...|
T Consensus       233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            34445555555555555555555543  2211       23344455555555555555555555555444

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.83  E-value=2.2  Score=43.73  Aligned_cols=130  Identities=12%  Similarity=0.007  Sum_probs=58.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcccHHHH----------HHHHHHHHH
Q 005808          385 LSRGIAQVNEGKYASAISIFDQILK-----------EDPMYPEALIGRGTARAFQRELEAA----------ISDFTEAIQ  443 (676)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A----------~~~~~~al~  443 (676)
                      +..-..++..+++++|..+...++.           .++-.+.+|++.+.++...|+....          ...+-.++.
T Consensus       140 lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~r  219 (523)
T 4b4t_S          140 LLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLK  219 (523)
T ss_dssp             ---------------------------------------------------------------CHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Confidence            3334455677888888887765541           1334467888888888877766543          222323332


Q ss_pred             h-----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808          444 S-----NPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACV  510 (676)
Q Consensus       444 ~-----~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (676)
                      .     ++. ....+..+-+.|...+.+++|..+..++.  .|..       ...++.+|.++.-.++|.+|.+++..++
T Consensus       220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~  297 (523)
T 4b4t_S          220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI  297 (523)
T ss_dssp             HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            2     222 24567778899999999999999999885  3422       3456778999999999999999999999


Q ss_pred             HhCCCC
Q 005808          511 KLDKEN  516 (676)
Q Consensus       511 ~~~~~~  516 (676)
                      ...|.+
T Consensus       298 rkap~~  303 (523)
T 4b4t_S          298 RKAPHN  303 (523)
T ss_dssp             SSCSCS
T ss_pred             HhCCcc
Confidence            887754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.78  E-value=7.8  Score=45.04  Aligned_cols=119  Identities=11%  Similarity=-0.061  Sum_probs=76.7

Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Q 005808          420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--------------------  479 (676)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------  479 (676)
                      .+...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|.++....                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34445555666655543    344567777777889999999999999999998763211                    


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcccHHHHHHHHHH
Q 005808          480 ---PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NK----SAYTYLGLALSSIGEYKKAEEAHLK  542 (676)
Q Consensus       480 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~----~~~~~la~~~~~~g~~~~A~~~~~~  542 (676)
                         ...+..|..+..++.+.+.++.+++..+.+++..+. +.    ..|..+-..+...|+|++|...+..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence               011234555666677777777777777777766432 22    2455666667777777777666644

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=89.36  E-value=31  Score=38.47  Aligned_cols=245  Identities=11%  Similarity=0.046  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP---M---YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-  449 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-  449 (676)
                      ..+++.+|.++...+  .+++..+...+..+.   .   +.    .+-..+|.++.-.++ +++.+.+...+..+.... 
T Consensus       413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~  489 (963)
T 4ady_A          413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG  489 (963)
T ss_dssp             HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence            345566666655444  578888888776543   0   11    345577777776665 456777777776433211 


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHH
Q 005808          450 -EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA----YTYLG  524 (676)
Q Consensus       450 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~la  524 (676)
                       .+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+.+.+-...+.....  .++..    ...+|
T Consensus       490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alg  567 (963)
T 4ady_A          490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIA  567 (963)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence             244557777777788776666666666543332223334455555677777666666655442  23332    34567


Q ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc--CC-H
Q 005808          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--GQ-H  601 (676)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--g~-~  601 (676)
                      ..|...|+...-...+..+.....++..-...+|......|+.+.+...+....+  ..++.+.+..+.++...  |+ .
T Consensus       568 lAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~  645 (963)
T 4ady_A          568 LAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL  645 (963)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc
Confidence            7778899966555577766654333333333344444445665444444433322  23455554444443332  22 2


Q ss_pred             HHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhc
Q 005808          602 KKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIG  633 (676)
Q Consensus       602 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g  633 (676)
                      .+++..+..... ++++.   .+...||.+.....
T Consensus       646 ~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          646 QSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCc
Confidence            678888888764 44321   24455555554433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.19  E-value=43  Score=32.16  Aligned_cols=135  Identities=13%  Similarity=0.056  Sum_probs=68.1

Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (676)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (676)
                      -.++..+..+|..+...+++.+|..+|-  +-. .+.+..+..+-.-+...               ..|.....+...|.
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~-~~s~~~~a~mL~ew~~~---------------~~~~e~dlfiaRaV  194 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LGT-KESPEVLARMEYEWYKQ---------------DESHTAPLYCARAV  194 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSC-TTHHHHHHHHHHHHHHT---------------SCGGGHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHH--hcC-CchHHHHHHHHHHHHHh---------------cCCccHHHHHHHHH
Confidence            3567788888888888888888777763  111 11112222211111111               12344444444443


Q ss_pred             -HHHHcCCHHHHHHHHHHhhc----C------------------CCCCHHH-HHHHHHHHHHhcc---HHHHHHHHHHHH
Q 005808          594 -LLHGLGQHKKAIKDLSSGLG----I------------------DPSNIEC-LYLRASCYHAIGE---YREAIKDYDAAL  646 (676)
Q Consensus       594 -~~~~~g~~~~A~~~~~~al~----~------------------~p~~~~~-~~~la~~~~~~g~---~~~A~~~~~~al  646 (676)
                       .|...++...|...++...+    .                  .|..+.. ...+..+-++.+.   |..-.+.|+..+
T Consensus       195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l  274 (336)
T 3lpz_A          195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANL  274 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             35667777777665444332    1                  1223321 1122222333442   445556666667


Q ss_pred             hhCC-CcHHHHHHHHHHHHHh
Q 005808          647 DLEL-DSMEKFVLQCLAFYQV  666 (676)
Q Consensus       647 ~~~p-~~~~~~~~~~~~~~~~  666 (676)
                      +.+| .-....-.++..||..
T Consensus       275 ~rd~~~~~~~L~~IG~~YFgi  295 (336)
T 3lpz_A          275 NELNGIWDTALELIAEMYFGI  295 (336)
T ss_dssp             HTTTTTTHHHHHHHHHHHHCC
T ss_pred             HhcHHHHHHHHHHHHHHHcCC
Confidence            7776 5566666677777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	676
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-32
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-32
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-30
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-28
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-26
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-25
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-19
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-18
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-14
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-18
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-15
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-17
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	7e-10
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	9e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.004
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-17
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-15
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-16
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-14
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	9e-14
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-13
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-13
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-08
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-11
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	9e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	7e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.001
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	9e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	2e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.004
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-06
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.003
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	9e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.004
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 3e-32
 Identities = 43/233 (18%), Positives = 93/233 (39%)

Query: 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
            + + + ++  P +  A    G     Q E+  AI  F +A+  +P+  +A+   G    
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
                  A+    +AL   PN A +      V ++    + A++     ++L      AY
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
             L  AL   G   +AE+ +  A++L     ++  +L    ++  N E+A+   ++ L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              F+ A+     +L   G+ ++A+      + I P+  +      +    + 
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 5e-32
 Identities = 45/215 (20%), Positives = 87/215 (40%)

Query: 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494
            + + +AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           + + F+ AV      + L   +   +  L       G    A + + +AI+L  +F +A+
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
            +L    ++  +  +A +C    L +    + + +    +    G  ++A++     L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            P         AS     G+ +EA+  Y  A+ + 
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 8e-30
 Identities = 42/250 (16%), Positives = 87/250 (34%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
                    +       K C  +  +++        + G     +G+   AI  F++ + 
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            DP + +A I  G      R  + A++ +  A+  +P+               G    AI
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
               +A+E +P+  D          +      A +  +  ++L   +  +   L      
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G  ++A   + KA+++   F  A  +L    Q     ++AL   ++ + I   F+ AY 
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 590 LRGLLLHGLG 599
             G  L  + 
Sbjct: 378 NMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-28
 Identities = 53/315 (16%), Positives = 103/315 (32%), Gaps = 34/315 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQA----------------------------------RAALGESVEAIQ 470
           NP   EA+   G                                      A G+   A+Q
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
               AL++ P+   +  + G +         A       ++       A++ LG   ++ 
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           GE   A     KA+ LD NFL+A+ +L    ++    ++A+    + L +    +  +  
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
              + +  G    AI      + + P   +     A+     G   EA   Y+ AL L  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 651 DSMEKFVLQCLAFYQ 665
              +          +
Sbjct: 303 THADSLNNLANIKRE 317

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 4e-26
 Identities = 34/186 (18%), Positives = 75/186 (40%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++ G        +  A++ + + L   P +             Q  ++ AI  +  
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI+  P   +A+     A    G   EA    + AL   P  AD L+    +  +  +  
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      +++  E  +A++ L   L   G+ ++A   + +AI++   F +A+ ++   
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 561 YQDLAN 566
            +++ +
Sbjct: 383 LKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 2e-25
 Identities = 61/309 (19%), Positives = 104/309 (33%), Gaps = 34/309 (11%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--------------- 424
           +    L          +   +       +K++P+  EA    G                 
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

Query: 425 -------------------RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
                                   ++E A+  +  A+Q NP         G    ALG  
Sbjct: 92  HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
            EA     KA+E +PN A      G V     +   A+      V LD     AY  LG 
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
            L     + +A  A+L+A+ L  N     G+L   Y +    + A++  ++ + +   F 
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
            AY      L   G   +A    ++ L + P++ + L   A+     G   EA++ Y  A
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

Query: 646 LDLELDSME 654
           L++  +   
Sbjct: 332 LEVFPEFAA 340

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 4e-13
 Identities = 23/119 (19%), Positives = 44/119 (36%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             D   +   A   +G  A A   ++  L+  P + ++L      +  Q  +E A+  + 
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +A++  P    A           G+  EA+    +A+   P  AD     G    + +D
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 43/397 (10%), Positives = 108/397 (27%), Gaps = 20/397 (5%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    Q    +   R C +  + +P      +L         R + +        +  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61

Query: 134 LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193
                  + +  L  +     Q +     Y  +  +    +      A   ++       
Sbjct: 62  -QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN 253
                 +   + D+    S   +         +          ++    +         N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 254 HNGSSDGSKSTHASRDASEINRQSSD------DFDICNGPIDKA-SVNERHGRQTNGTHD 306
             G      + H    A  ++    D      +        D+A +   R    +     
Sbjct: 181 AQGEIW--LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

Query: 307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNK 366
           VH  L+         +   ++Y ++        D+  + +    +   + E  +      
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

Query: 367 KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426
           + C            D   +    +  +G    A+ ++ + L+  P +  A     +   
Sbjct: 299 RLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
            Q +L+ A+  + EAI+ +P+  +A+   G     + 
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 10/82 (12%), Positives = 21/82 (25%)

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
               +  G  + A +        +P N   L L +S +        +      A+     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 652 SMEKFVLQCLAFYQVLFDMEYY 673
             E +      + +     E  
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAI 87

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L   R + +A+      L+ S     +  N A  Y +  L    I    +A++L P    
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEH 132
           AY     A    G   EA   +      
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRL 300

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICN-RAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L    + ++A    ++ L       D  N  A    +    +  +R   KAL++ P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A+          G+ +EAL  +++   
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 105 AYILKGCAFSALG 117
           AY   G     + 
Sbjct: 375 AYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            N    ++        I   +KA+ LDP  L AYI  G         + A++ + +   
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 41  IELAKLC-SLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAF 113
           +P L +AY   G  +
Sbjct: 63  NPLLAEAYSNLGNVY 77

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 2e-19
 Identities = 23/242 (9%), Positives = 63/242 (26%), Gaps = 6/242 (2%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA- 458
           +     Q         ++ +G       ++ L+     + + + ++       K      
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61

Query: 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
             A    +  +Q  +K       S    +    +      +   +++L     +D   + 
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
             + LG+  +         +    +            HL    +    + +A    +   
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            +     + Y+   +L    G H   I      + +                   E R+ 
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE 239

Query: 639 IK 640
           +K
Sbjct: 240 VK 241

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 1e-18
 Identities = 23/219 (10%), Positives = 59/219 (26%), Gaps = 6/219 (2%)

Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH-ERGIV 492
           +     +A        ++     +   +     +  Q   K L  +   A     E+ + 
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQDLW 61

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           N  FK+    ++  +        ++          ++ G Y +  +       +D     
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L        ++   ++                   G +     Q  +A        
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
            + PSN +     A    + G++   I  Y  ++ ++  
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 1e-14
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 5/194 (2%)

Query: 397 YASAISIFDQILKEDP---MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           + + I+      K                   A        + +       +        
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + G        +   ++  S +          L   G +       + A        +L 
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             N   Y  L +  SS G++      + ++I +   F  A  +L +       S   ++ 
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242

Query: 574 LQQVLYIDKRFSKA 587
              V    K F K 
Sbjct: 243 KWGVSDFIKAFIKF 256

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI    +   ++ +                L+  G    ++ +   A S +  A Q  P
Sbjct: 126 LGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP 183

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           S G+ + +     ++ G+ +  I    +++  +     
Sbjct: 184 SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 13/123 (10%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           ++ +   +A  L  +  ++     + +      +   +  Q++L  D  ++    +   L
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSR---QALQDLYQKMLVTDLEYALDKKVEQDL 60

Query: 595 L-HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653
             H        ++  +        +     L      A G Y + +++     +++L   
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 654 EKF 656
            K 
Sbjct: 121 VKS 123

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 9/110 (8%)

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-----NIEC 621
           S ++ + L+Q   +    + +      +       +   + +   L  D        +E 
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKM---LVTDLEYALDKKVEQ 58

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQVLFDM 670
                +  + I   +   K+       E+  ++  F+     FY  L   
Sbjct: 59  DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQE 108

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 51/294 (17%), Positives = 101/294 (34%), Gaps = 21/294 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142

Query: 494 ----FKFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+L     +      LG+  +  GEY KA +    A+ + 
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYR----EAIKDYDAALDLELDSMEKFV 657
               L +   +        +    I          +   DA    +   +   +
Sbjct: 263 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 316

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 5e-15
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 17/259 (6%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
                    G  R  + +L  A+  F  A+Q +P   EAW+  G  +A   + + AI  L
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------ 526
            + LE +P++   L    +          A E L   ++         T           
Sbjct: 77  RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 136

Query: 527 ---------LSSIGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQ 575
                    L S   + + +E  L A++L       +    L   +      +KA++C  
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 196

Query: 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
             L +       ++  G  L    Q ++A+      L + P  I   Y        +G +
Sbjct: 197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 256

Query: 636 REAIKDYDAALDLELDSME 654
           REA++ +  AL+++  S  
Sbjct: 257 REAVEHFLEALNMQRKSRG 275

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 5e-10
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 474 KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           K  +FE            E G+   +  D   AV    A V+ D ++  A+ YLG   + 
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
             +   A  A  + ++L  +   A   L   + + +   +A E L+  L     ++    
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
                  G G                               +   + E  + + AA+ L+
Sbjct: 126 PAEEGAGGAGLG-------------------PSKRILGSLLSDSLFLEVKELFLAAVRLD 166

Query: 650 LDSMEKFVLQCLAFYQ 665
             S++  V   L    
Sbjct: 167 PTSIDPDVQCGLGVLF 182

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
           A  +K  +  ++    D          GL     G    A+    + +  DP ++E    
Sbjct: 2   ATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 58

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYY 673
             +      +   AI      L+L+ D+    +   ++F       +  
Sbjct: 59  LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 107

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 17/116 (14%), Positives = 28/116 (24%)

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
                +   A+   +  +  D +  +A+   G       Q   AI  L   L + P N  
Sbjct: 29  RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 88

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE 676
            L   A  +      R+A +     L                            L 
Sbjct: 89  ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.6 bits (200), Expect = 2e-17
 Identities = 25/243 (10%), Positives = 66/243 (27%), Gaps = 7/243 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--RAFQRELEAAISDFTEAIQSNPS 447
            + +     + +   +  L+ +P        R     R  +      +      ++++  
Sbjct: 82  PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141

Query: 448 -AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                  RR  A  A     E +      +    ++    H R  +  +      +    
Sbjct: 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                +  +                   ++   + + +      L       +    L +
Sbjct: 202 RLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS 257

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             ++ + LQ++   +K       L    L  L   K+ ++  S+   +DP     L    
Sbjct: 258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317

Query: 627 SCY 629
           S +
Sbjct: 318 SKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (141), Expect = 7e-10
 Identities = 31/259 (11%), Positives = 68/259 (26%), Gaps = 43/259 (16%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV----------NFKFKDF 499
            A +   Q R A       ++  S+ L   P+ A + + R  V                 
Sbjct: 30  SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHL 557
            A +  L +C++++ ++   + +    LS + E  + +  E   + ++ D      W + 
Sbjct: 90  KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149

Query: 558 TQF-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--- 613
                Q      + L     ++  +     ++H R  LL  L     +            
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209

Query: 614 ---------------------------IDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                                           +    L       +    E+ K+     
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269

Query: 647 DLELDSMEKFVLQCLAFYQ 665
                 +   +L   A   
Sbjct: 270 PENKWCLLTIILLMRALDP 288

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.4 bits (132), Expect = 9e-09
 Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 4/153 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R            +               E +        F    + +   +   +    
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRA 239

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                 +   +    L   +E+ ++L +           +                ++  
Sbjct: 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           S    +D    +    L           K E A
Sbjct: 300 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 6/85 (7%), Positives = 18/85 (21%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
              R    ++  +                  +     ++  E+      +I    A    
Sbjct: 230 FYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 289

Query: 429 RELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  F+     +P       
Sbjct: 290 LYEKETLQYFSTLKAVDPMRAAYLD 314

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 79.9 bits (195), Expect = 3e-17
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 6/228 (2%)

Query: 430 ELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           + E  ++   + + S    +    +    RG    +LG    A  D S+AL   P+  ++
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
            +  GI   +  +F+AA E   + ++LD     A+   G+AL   G  K A++  L   Q
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133

Query: 546 LDRNFLE--AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            D N      W +L +   D   +++ L+   +    ++            +      ++
Sbjct: 134 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
              D +    +     E  +     Y ++G+   A   +  A+   + 
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 73.7 bits (179), Expect = 4e-15
 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFY 561
           +DL A  + D  +     +L LA   + E +  E       + D+               
Sbjct: 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 67.1 bits (162), Expect = 7e-13
 Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 2/232 (0%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
              + +          RG+   + G  A A + F Q L   P  PE     G        
Sbjct: 27  ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            +AA   F   ++ +P+   A   RG A    G    A  DL    + +PN         
Sbjct: 87  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146

Query: 491 IVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           +   K  +  A         K DKE    +   +    +S     ++ +        L  
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  E   +L ++Y  L + + A    +  +  +      +    L L  LGQ
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 28/170 (16%), Positives = 59/170 (34%)

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           + L++    D E        G+   S+G    A     +A+ +  +  E + +L  +   
Sbjct: 24  QILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 83

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
             N + A E    VL +D  ++ A+  RG+ L+  G+ K A  DL +    DP++     
Sbjct: 84  AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYY 673
                   + E +            + +     +++          +   
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 561 YQDLANSEKALECLQQVLYI----DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
            Q     E  L  ++Q+L      D   ++  + RG+L   LG    A  D S  L I P
Sbjct: 9   LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68

Query: 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYY 673
              E            G +  A + +D+ L+L+       + + +A Y    D    
Sbjct: 69  DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 3e-16
 Identities = 30/229 (13%), Positives = 76/229 (33%), Gaps = 8/229 (3%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG------QHKKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++            ++ ++     + 
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662
           + P N              G   +     +  LDL+      +++  L 
Sbjct: 215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLV 262

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 3e-14
 Identities = 32/256 (12%), Positives = 84/256 (32%), Gaps = 10/256 (3%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 39  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 98

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 99  NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 158

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL------ANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W        +       A  E+ ++   +++ +   
Sbjct: 159 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 218

Query: 584 FSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE--YREAIK 640
              A++    +L   G      + +    L    S+   +      Y  + E        
Sbjct: 219 NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278

Query: 641 DYDAALDLELDSMEKF 656
             + AL+L     ++ 
Sbjct: 279 ILNKALELCEILAKEK 294

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 5e-09
 Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 1/112 (0%)

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
            +      +  I     F + + +     Q    SE+A +  +  + ++      +H R 
Sbjct: 25  PQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 84

Query: 593 LLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
           +LL  L +   + +  +++ +   P N +  + R      + +  + ++   
Sbjct: 85  VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 136

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 4e-16
 Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 6/197 (3%)

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +PSA +  K +G       +  EA     +A+   P  A     R +   K +    A+ 
Sbjct: 1   SPSA-QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           D    ++LD ++  A+ +LG     +  Y +A     +A  L +     +G         
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-- 117

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A +     +   +   ++     L      + ++ +++          +      
Sbjct: 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQ 174

Query: 625 RASCYHAIGEYREAIKD 641
           +A       +Y   + +
Sbjct: 175 QACIEAKHDKYMADMDE 191

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (166), Expect = 9e-14
 Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 5/188 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + +A    GQ +  +    EAI +L +A            +      +      A +  
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKR 124

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++  + ++ +  +  L      E ++  E   +  +   +                 
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

Query: 567 SEKALECL 574
               ++ L
Sbjct: 185 YMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.5 bits (161), Expect = 4e-13
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 5/193 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           + L  +G      R+   A + +  AI  NP     +  R      + +  +A+ D  +A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           LE +  S       G    + + ++ A+ +L     L KE +  +     +       + 
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-----LRI 119

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
           A++    +I+  R   E+  H        A  E+ LE  Q+     +        +  + 
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 596 HGLGQHKKAIKDL 608
               ++   + +L
Sbjct: 180 AKHDKYMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 21/143 (14%), Positives = 46/143 (32%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G  L    +Y +A   + +AI  +      + +    Y  +   E+AL   ++ L +D 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           +  KA+   G     +  + +AI +L     +                 I + +      
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129

Query: 643 DAALDLELDSMEKFVLQCLAFYQ 665
           +  +  E +          A  +
Sbjct: 130 ERRIHQESELHSYLTRLIAAERE 152

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 19/116 (16%), Positives = 41/116 (35%)

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
                   +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++
Sbjct: 14  LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFDMEYYGLE 676
             +    C   +  Y EAI +   A  L  +    F     +  ++     +  +E
Sbjct: 74  AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 20/187 (10%), Positives = 54/187 (28%), Gaps = 10/187 (5%)

Query: 355 LKETSNEAKRNKKF-----CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           LKE  N     +K+     C  R      +   +  +R +  +   +   A++   + L+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            D    +A    G  +      + AI++   A          +     +   +     A 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AK 121

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +    ++E      +      +      +    +E+     +  +++           + 
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

Query: 530 IGEYKKA 536
             +Y   
Sbjct: 182 HDKYMAD 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 3/163 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +L   R + +A       + ++  +     NRA CY +++  +  + DC +AL+LD   +
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           +A+   G     +   +EA++  ++ Y   L +   L    ++   L  AK+ R  + E 
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 164 DVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRD 206
              +  S L    + L A ++  E  E     +  +     R 
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 8e-14
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ +RG       +   AI+DL +AL     +  I ++   + FK           
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE------ 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                           +    +   E+KKAEE    A  +                  + 
Sbjct: 122 ------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSK 157

Query: 567 SEKALECLQQVLYIDKR 583
            +KA+EC+ +    +  
Sbjct: 158 IDKAMECVWKQKLYEPV 174

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 1e-13
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 21/166 (12%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           L   G++    KD+  A++  S    +   +      +G   + +    +AE+A  ++I 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
            D++   A+      Y      + A++ L++ L   +                    + I
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------------------GNQLI 106

Query: 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
                GL       E LY  A  Y    E+++A +    A  ++ +
Sbjct: 107 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           +  AI+   E       ++W  A+    ++      I    N    Y+ L+      +  
Sbjct: 2   LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAF 59

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            +++  D  L  AY  +G  +    + + A+   ++    
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 1/119 (0%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G+ ++A E  ++AI+             +      + E+A E L Q + +   +      
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L+      K   +  ++   +     +    +  +      +Y +  +      +L
Sbjct: 70  LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 457 QARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           Q + AL  G+  +A++ L +A++  P  A +      +     DF  A E L   +KL  
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALEC 573
           E     + L   + +    K   +    A  L  N  L              + E+  E 
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 574 LQQVLYIDKRFSKAYHLRG 592
             Q+  + +      +   
Sbjct: 122 ALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 1/136 (0%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           ++EG+   A+ +  + +K  P                 + E A     ++I+  P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACV 510
             +      A     +  Q  + A                 ++   +D+    E      
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 511 KLDKENKSAYTYLGLA 526
           +L +E          +
Sbjct: 127 ELRQEKGFLANDTSFS 142

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 1/131 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           + +L+ A+    EAI+++P          +     G+   A + L ++++  P       
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
           +   +    +      +  +    L + E  +             +Y++  E  L+  +L
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Query: 547 DRNFLEAWGHL 557
            +         
Sbjct: 129 RQEKGFLANDT 139

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 60.8 bits (147), Expect = 7e-11
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 1/112 (0%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDF 438
               R S       +G +  A     Q +K  P Y           +A Q   + A    
Sbjct: 29  DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           T  +                     +  +  +   +  E       + ++  
Sbjct: 89  TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 60.8 bits (147), Expect = 8e-11
 Identities = 14/122 (11%), Positives = 40/122 (32%), Gaps = 1/122 (0%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
               A+E L   +K   ++ S  +     L   G++++A+E  +++I+L   +L     L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
               +     +   +       + +        +   L      +++  +       +  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 617 SN 618
             
Sbjct: 131 EK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 558 TQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615
           TQ+   L+    ++ALE L + +    + +        LL   G  ++A + L   + + 
Sbjct: 1   TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

Query: 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           P  +           A    ++  +    A  L 
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLG 94

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 63.8 bits (153), Expect = 2e-11
 Identities = 42/315 (13%), Positives = 87/315 (27%), Gaps = 41/315 (13%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-----MYPEALIGRGTARAFQR 429
           +  ++  +F   R    +N+G    A  +    L+E P         A    G     + 
Sbjct: 6   REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65

Query: 430 ELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--- 480
           EL  +++   +  Q          A  +  ++ +   A G    A +   KA +      
Sbjct: 66  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125

Query: 481 -----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-----AYTYLGLALSSI 530
                    ++  R  + + +   + A     + +++    +          L     + 
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 531 GEYKKAEEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           G+   A     +   L  N          A      ++Q   +   A   L+     +  
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245

Query: 584 FSKA----YHLRGLLLHGLGQHKKAIKDLSSGL------GIDPSNIECLYLRASCYHAIG 633
            +      +         LG+ + A   L           +       L L    Y   G
Sbjct: 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 634 EYREAIKDYDAALDL 648
              +A +    AL L
Sbjct: 306 RKSDAQRVLLDALKL 320

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (124), Expect = 9e-08
 Identities = 34/265 (12%), Positives = 67/265 (25%), Gaps = 31/265 (11%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNF 494
           + I+ +    E    R Q     G   EA +    ALE  P              G V  
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 495 KFKDFNAAVEDLSACVKLDKENKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              +   ++  +    ++ +++        +       L + G  + A E   KA QL  
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 549 NFL--------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--- 597
                             Q     A  ++A    +  + +   +     L+ L +     
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182

Query: 598 ---------LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                      Q  +    L +G            +R   +   G+   A          
Sbjct: 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242

Query: 649 ELDSMEKFVLQCLAFYQVLFDMEYY 673
           E  +      Q     +    +  +
Sbjct: 243 EFANNHFLQGQWRNIARAQILLGEF 267

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY---QDLANSEKALECLQQVLYIDK 582
            L S+ +  K E+                          +   +  K +  L+++L    
Sbjct: 8   ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS 67

Query: 583 --RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
                       +  + L +++KA+K +   L  +P N +   L      A+ 
Sbjct: 68  KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 5/107 (4%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA---AISDFTEAIQ--SNP 446
           V+          F        +               R  +     I    E +   S  
Sbjct: 10  VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
              +           L E  +A++ +   L+ EP +        +++
Sbjct: 70  EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-----HLKAIQLDRNFL 551
           +D     +   +       +KS        L          +       L          
Sbjct: 13  EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +   +L      L   EKAL+ ++ +L  + + ++A  L  L+
Sbjct: 73  DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 11/110 (10%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---AVEDLSACVKLDKENK 517
           ++ + ++  +           S     E      + +  +     +  L   +    + +
Sbjct: 11  SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE 70

Query: 518 S--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                 YL +    + EY+KA +     +Q +    +A        + + 
Sbjct: 71  QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQ 600
           AI+LD+ +++ +         L     AL   + V+ +      A         +     
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 601 HKKAI------KDLSSGLGIDPSNIECLY 623
            ++AI      + +   L I+   IE  Y
Sbjct: 130 FERAIAGDEHKRSVVDSLDIESMTIEDEY 158

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANS 567
           ++LDK+    Y     +  ++G+++ A   +   +++  +  +A                
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 568 EKALECLQQ 576
           E+A+   + 
Sbjct: 131 ERAIAGDEH 139

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 19/160 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             A I+ E+G V FK   +  AV      V                        +   + 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-------------------EMEYGLSE 53

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            ++   +   L A+ +L   Y  L    KA+EC  + L +D    K  + RG     + +
Sbjct: 54  KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 113

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640
            + A  D    L ++P N         C     E+ E  +
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 19/158 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G      GKY  A+  + +                                 E+  S  
Sbjct: 21  KGTVYFKGGKYVQAVIQYGK-------------------IVSWLEMEYGLSEKESKASES 61

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+         L E  +A++   KAL  +  +   L+ RG       +F +A  D 
Sbjct: 62  FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
              ++++ +NK+A   + +      E+ + +      +
Sbjct: 122 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEF---------------EPNSADILHERGIVNF 494
              K +G      G+ V+A+    K + +               E           +   
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           K +++  AVE     + LD  N+      G A   + E++ A+    K ++++     A 
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 555 GHLTQFYQDLANSEKA 570
             +    +      + 
Sbjct: 136 LQIFMCQKKAKEHNER 151

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             ++D+ K L      ++ L   G   FK +++  A++  +  ++  + +++A       
Sbjct: 15  VDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA--- 67

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
                             +L    L    ++      +++ + A++   + L ID   +K
Sbjct: 68  ---------------DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           A + R     GL ++ +A+ DL     I P +             I   ++  K  
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 16/132 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQI----------------LKEDPMYPEALIGRGTARAFQRE 430
            G        +  AI  + ++                 K  P+    ++  G  +    +
Sbjct: 33  IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E  
Sbjct: 93  WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152

Query: 491 IVNFKFKDFNAA 502
            V  K K     
Sbjct: 153 KVKQKIKAQKDK 164

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
            A K  G   AA G   +A + LS AL                     D           
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV------------LDDLRDFQFVEPFA 59

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++   A+T    A  + G                      W  L   Y        
Sbjct: 60  TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119

Query: 570 ALECLQQV 577
           AL   ++V
Sbjct: 120 ALGAYRRV 127

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 22/122 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----------------------EAWK 453
            A    G   A     E A    + A++                             A  
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHT 71

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
            + +A  A G +   I +L       P    +  +     +     + A+          
Sbjct: 72  AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131

Query: 514 KE 515
            +
Sbjct: 132 AD 133

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+  Y         +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG       ++  A + + KA +LD   +    +    Y +  +  K  E  ++ + + +
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 583 RFSKAYHL-------RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
              + Y          G       ++K AI   +  L    + 
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G     +  + +A+  +D+  + DP     +  +      + +         +AI+    
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

Query: 448 AGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPN 481
             E       A+ R G +     +  +AI   +K+L     
Sbjct: 71  NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 33/235 (14%)

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALE------FEPNSADILHERGIVNFKFKDFNA 501
           A +   +         E   A     KA +       E  + +   E         +   
Sbjct: 36  AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95

Query: 502 AVEDLSACVKLDKENKSAYTYLGLAL-------SSIGEYKKAEEAHLKAIQLDRN----- 549
           AV+ L   +++                      + + +Y KA + +  A +         
Sbjct: 96  AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155

Query: 550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYHLRGLLLHGLGQH 601
              + +              +A +   +++                +  +GL        
Sbjct: 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215

Query: 602 KKAIKDLSSGLGIDPSNI---ECLYLRASC----YHAIGEYREAIKDYDAALDLE 649
             A + L  G   DP+     E  +L++           +  E  K++D  + L+
Sbjct: 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 0.003
 Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 19/153 (12%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE 572
                        E   A ++ LKA    +           +    + ++   NS  A++
Sbjct: 39  LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHG-------------LGQHKKAIKDLSSGLGIDPSNI 619
            L+  + I     +                             +   +  +       + 
Sbjct: 99  SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
           +C    A      G+Y EA   Y   +   + +
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 8e-06
 Identities = 21/106 (19%), Positives = 42/106 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   P
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             G+ + R+  A   L    EA +   + L+ E N+  +      +
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 22/108 (20%), Positives = 48/108 (44%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           V L  +    Y+    AL  +  +++A+  + + ++ + N  +    L
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 20/107 (18%), Positives = 44/107 (41%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G    S+G    A + + +AI+LD +    + + +  Y    + +KA E   + + +  
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
            + K Y  +   L  L + ++A +    GL  + +N +      +  
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 19/160 (11%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           + I+ ERG V FK   +  A+      V                        ++  ++ +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWL-------------------EYESSFSNEE 53

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           A +     L +  +L   +  L     A+E   + L +D    K    RG     +   +
Sbjct: 54  AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 113

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
            A  D    L + P+N       A C   I       K  
Sbjct: 114 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 153

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQI---------------LKEDPMYPEALIGRGTARAFQREL 431
           RG     EGKY  A+  + +I                K   +   + +         +  
Sbjct: 19  RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 78

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 79  SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138

Query: 492 VNFKFKDFNAAVEDL 506
              + +   A  + L
Sbjct: 139 CQQRIRRQLAREKKL 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+      +      +     + L               
Sbjct: 15  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-------------- 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 61  ----KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 116

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 117 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQ----------------ILKEDPMYPEALIGRGTARAFQRE 430
            G     + +   AI  + +                + K+  +     +   T     ++
Sbjct: 23  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 82

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
              AI   ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   
Sbjct: 83  YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 142

Query: 491 IVNFKFKDFN 500
           +   K K+  
Sbjct: 143 LCVNKLKEAR 152

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-------YTYLGLALSSIGEYK 534
           +A+   E G V +   D+      +   ++   E + +         YL  A+   G+  
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           KA     K ++LD     A G+L  F   +A
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	676
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.85
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.82
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.68
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.63
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.58
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.45
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.39
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.38
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.37
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.37
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.28
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.28
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.0
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.96
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.94
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.84
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.0
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.89
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.94
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.86
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.66
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.42
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	84.67

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-38  Score=321.08  Aligned_cols=381  Identities=16%  Similarity=0.148  Sum_probs=302.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005808           44 AKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA  122 (676)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A  122 (676)
                      ..+|+.|+|++|+.+|.++++.+| ++..+..+|.+++++|+|++|+..++++++++|+++.+++.+|.+|..+|++++|
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence            457899999999999999999994 5677999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCc
Q 005808          123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS  202 (676)
Q Consensus       123 ~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (676)
                      +..|.++++..|...............       .     ..                                      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~--------------------------------------  116 (388)
T d1w3ba_          87 IEHYRHALRLKPDFIDGYINLAAALVA-------A-----GD--------------------------------------  116 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH-------H-----SC--------------------------------------
T ss_pred             ccccccccccccccccccccccccccc-------c-----cc--------------------------------------
Confidence            999999977766654332211110000       0     00                                      


Q ss_pred             CCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCcc
Q 005808          203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD  282 (676)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (676)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (388)
T d1w3ba_         117 --------------------------------------------------------------------------------  116 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHH
Q 005808          283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA  362 (676)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (676)
                                                                                                  ..  
T Consensus       117 ----------------------------------------------------------------------------~~--  118 (388)
T d1w3ba_         117 ----------------------------------------------------------------------------ME--  118 (388)
T ss_dssp             ----------------------------------------------------------------------------SS--
T ss_pred             ----------------------------------------------------------------------------cc--
Confidence                                                                                        00  


Q ss_pred             HHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (676)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (676)
                        .............+.........+......+....+...+.+.+...|+++.++..+|.++...|++++|...+++++
T Consensus       119 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  196 (388)
T d1w3ba_         119 --GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV  196 (388)
T ss_dssp             --HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             --ccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHH
Confidence              000011111222334456666777777888888888888888888888888888888888888888888888888888


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005808          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (676)
Q Consensus       443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (676)
                      ..+|++..++..+|.++...|++++|+..++++....|.....+..+|.++...|++++|+..++++++.+|+++.++..
T Consensus       197 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  276 (388)
T d1w3ba_         197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN  276 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (676)
                      +|.++...|++++|+..++.++...|.+...+..++.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus       277 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  356 (388)
T d1w3ba_         277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc
Q 005808          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (676)
                      +|+..|+++++++|+++.++..+|.+|.++|+
T Consensus       357 ~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            88888888888888888888888888877765

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=280.85  Aligned_cols=378  Identities=17%  Similarity=0.173  Sum_probs=322.2

Q ss_pred             hhhhhhhhhhhhhcccchhhhhhhhhHHHHHHHHHH-HHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHH
Q 005808           10 RYRLNKTHKTICEIDELVRVDSVMASAITARIELAK-LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKH   87 (676)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~   87 (676)
                      -|+.|+.++-+--..++++.+   |........++. ++..|+|++|+.+|+++++++ .++..+.++|.++.++|++++
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence            455666666554444555443   333344555555 468999999999999999999 455669999999999999999


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccc
Q 005808           88 VIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSN  167 (676)
Q Consensus        88 A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~  167 (676)
                      |+..+.+++..+|.........+......+....+...........+.............                    
T Consensus        86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  145 (388)
T d1w3ba_          86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL--------------------  145 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH--------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------------
Confidence            999999999999999999999999999999988888777766433322211110000000                    


Q ss_pred             cCCCccccccccCCCCCCccccccCCCCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCcc
Q 005808          168 SMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKL  247 (676)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (676)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (388)
T d1w3ba_         146 --------------------------------------------------------------------------------  145 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCCCCCcccccccchhhcccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccc
Q 005808          248 REVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES  327 (676)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  327 (676)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (388)
T d1w3ba_         146 --------------------------------------------------------------------------------  145 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808          328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI  407 (676)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~  407 (676)
                                            .        ...................|..+..+..+|..+...|++++|...++++
T Consensus       146 ----------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  195 (388)
T d1w3ba_         146 ----------------------K--------ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA  195 (388)
T ss_dssp             ----------------------H--------TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ----------------------c--------ccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHH
Confidence                                  0        0000001111223344567889999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005808          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (676)
Q Consensus       408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  487 (676)
                      ++.+|+++.++..+|.++...|++++|+..+.++....|.....+..+|.++...|++++|+..|+++++.+|+++.++.
T Consensus       196 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  275 (388)
T d1w3ba_         196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             HHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (676)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  567 (676)
                      .+|.++...|++++|+..++.++...|.+...+..++.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus       276 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  355 (388)
T d1w3ba_         276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q 005808          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (676)
Q Consensus       568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (676)
                      ++|+..|+++++++|+++.++..+|.+|.++||
T Consensus       356 ~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.9e-27  Score=234.13  Aligned_cols=241  Identities=20%  Similarity=0.246  Sum_probs=191.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      +....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHH---------------HHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Q 005808          460 AALGESVEAIQDLSKALEFEPNSADILH---------------ERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTY  522 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~---------------~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~  522 (676)
                      ...|++++|+..+++++...|.......               .....+...+.+.+|+..+.+++..+|+.  +.++..
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~  177 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG  177 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence            9999999999999999999887543211               11122334456677777777777776653  456667


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (676)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (676)
                      +|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhhcCCCCCHH
Q 005808          603 KAIKDLSSGLGIDPSNIE  620 (676)
Q Consensus       603 ~A~~~~~~al~~~p~~~~  620 (676)
                      +|+..|+++++++|++..
T Consensus       258 ~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         258 EAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhCCcChh
Confidence            777777777777666554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-26  Score=230.51  Aligned_cols=242  Identities=21%  Similarity=0.239  Sum_probs=220.2

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (676)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (676)
                      ...+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHHcccHHHHHHHHHHHHhcCccc--HHHHHHHH
Q 005808          496 FKDFNAAVEDLSACVKLDKENKSAY---------------TYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLT  558 (676)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la  558 (676)
                      .|++++|+..+++++...|.....+               ......+...+.+.+|+..+.+++..+|+.  +.++..+|
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            9999999999999999988753211               112234456678899999999999998874  77889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH
Q 005808          559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (676)
Q Consensus       559 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (676)
                      .++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHH
Q 005808          639 IKDYDAALDLELDSMEKFV  657 (676)
Q Consensus       639 ~~~~~~al~~~p~~~~~~~  657 (676)
                      +..|+++++++|++..++.
T Consensus       260 ~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         260 VEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHhCCcChhhhh
Confidence            9999999999999877543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7e-23  Score=202.06  Aligned_cols=209  Identities=15%  Similarity=0.145  Sum_probs=174.1

Q ss_pred             hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHH
Q 005808          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      +.-+|...+++..+|.++...+.+++|+.+++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            44566777888888889999999999999999999999999999999999988876 48999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      ..+|.++..+|++++|+..+.++++.+|++..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888877665


Q ss_pred             ------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          533 ------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       533 ------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                            +++|+..+.++++.+|++..+|..++.++... ...++...+..+++..|.
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC
Confidence                  56777777777777777777777777665433 346666666666666554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-22  Score=196.47  Aligned_cols=254  Identities=13%  Similarity=0.116  Sum_probs=227.0

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 005808          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADIL  486 (676)
Q Consensus       408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~  486 (676)
                      +..+|+..+++..+|.++...+.+++|+..++++++++|++..+|..+|.++...|. +++|+..+++++..+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            345788889999999999999999999999999999999999999999999999874 9999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 005808          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (676)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  566 (676)
                      ..+|.++...|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++++|.+..+|.++|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             ------HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHh------
Q 005808          567 ------SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYLRASCYHAI------  632 (676)
Q Consensus       567 ------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~------  632 (676)
                            +++|+..+.++++.+|++..+|..++.++...| ..++...++.++++.|+  ++.++..++.+|...      
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~  274 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD  274 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence                  689999999999999999999999999876554 68889999999887765  466777788877543      


Q ss_pred             ---ccHHHHHHHHHHH-HhhCCCcHHHHHHHHHH
Q 005808          633 ---GEYREAIKDYDAA-LDLELDSMEKFVLQCLA  662 (676)
Q Consensus       633 ---g~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~  662 (676)
                         +.+++|...+... .+.+|-....|..++..
T Consensus       275 ~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         275 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence               4578898888874 46788776666655544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.4e-23  Score=210.21  Aligned_cols=266  Identities=11%  Similarity=0.005  Sum_probs=241.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005808          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----------RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (676)
Q Consensus       395 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  464 (676)
                      +..++|+.+++++++.+|++..+|..++.++...          |++++|+.++++++..+|++..+|..+|.++...++
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            3458999999999999999999998877776544          458999999999999999999999999999888765


Q ss_pred             --HHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808          465 --SVEAIQDLSKALEFEPNSADIL-HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (676)
Q Consensus       465 --~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (676)
                        +++|+..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|+..+.
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~  202 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence              8999999999999999998876 5678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 005808          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (676)
Q Consensus       542 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (676)
                      +++...|.....+.    .+...+..+++...+.+++...|.....+..++.++...|++.+|+..+.+++..+|.+..+
T Consensus       203 ~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  278 (334)
T d1dcea1         203 LPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT  278 (334)
T ss_dssp             SCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHH
Confidence            98888887655443    34556888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (676)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (676)
                      +..+|.++..+|++++|+.+|+++++++|+....|..++..+.
T Consensus       279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         279 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998887766554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.4e-20  Score=177.98  Aligned_cols=142  Identities=22%  Similarity=0.206  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808          396 KYASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (676)
Q Consensus       396 ~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (676)
                      +.+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            34455555555554322    12345555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808          472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (676)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (676)
                      |++++..+|+++.++..+|.++...|++++|+..++++++.+|.+......++.++...+..+.+.
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE  159 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHH
Confidence            555555555555555555555555555555555555555555555555444444444444433333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.7e-20  Score=177.74  Aligned_cols=222  Identities=19%  Similarity=0.157  Sum_probs=116.9

Q ss_pred             cHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005808          430 ELEAAISDFTEAIQSNP----SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (676)
Q Consensus       430 ~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  505 (676)
                      +.+.|+..+.+++...+    ....+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            34445555555554322    22345555666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH
Q 005808          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (676)
Q Consensus       506 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  585 (676)
                      |+++++++|+++.++..+|.++...|++++|+..++++++.+|.+......++..+...+..+.+...........+...
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW  173 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence            66666666666666666666666666666666666666666665555555555555555544444443333333333221


Q ss_pred             HHHHHHHHHHH----HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          586 KAYHLRGLLLH----GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       586 ~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                      . + .+...+.    ..+.+..+...+.......|....+++.+|.+|..+|++++|+.+|++++..+|++.
T Consensus       174 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         174 G-W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             H-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             h-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            1 1 1111111    112233344444444444455555566666666666666666666666666666553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2.4e-21  Score=193.77  Aligned_cols=266  Identities=11%  Similarity=-0.064  Sum_probs=236.7

Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHH
Q 005808          367 KFCVTRISKSKSISVDFRLSRGIAQVNE----------GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE--LEAA  434 (676)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A  434 (676)
                      ......+...+|....+|..++.++...          |++.+|+.+++++++.+|+++.+|..+|.++...++  +++|
T Consensus        49 l~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a  128 (334)
T d1dcea1          49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARE  128 (334)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHH
Confidence            3455677788999999988777765544          448999999999999999999999999999888765  8999


Q ss_pred             HHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005808          435 ISDFTEAIQSNPSAGEAW-KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (676)
Q Consensus       435 ~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (676)
                      +..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|+..+.+++...
T Consensus       129 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~  208 (334)
T d1dcea1         129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL  208 (334)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred             HHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH
Confidence            999999999999998876 4677888899999999999999999999999999999999999999999999998888887


Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (676)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (676)
                      |.....+    ..+...+..+++...+.+++...|.....+..++.++...|++.+|+..+.+++..+|.+..++..+|.
T Consensus       209 ~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  284 (334)
T d1dcea1         209 LKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR  284 (334)
T ss_dssp             HHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence            7654433    345667788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHH
Q 005808          594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR  636 (676)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  636 (676)
                      ++...|++++|+.+|+++++++|.+...|..++..+.....+.
T Consensus       285 ~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~  327 (334)
T d1dcea1         285 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL  327 (334)
T ss_dssp             HHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHH
Confidence            9999999999999999999999999999999988887544433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.6e-18  Score=170.96  Aligned_cols=273  Identities=15%  Similarity=0.047  Sum_probs=232.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----
Q 005808          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----  448 (676)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----  448 (676)
                      ..++....+|.+++..|++++|+..++++++..|.+     ..++..+|.++...|++++|+..|++++...+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            346778889999999999999999999999999886     3578889999999999999999999998865432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---
Q 005808          449 -GEAWKRRGQARAALGESVEAIQDLSKALEFEP--------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---  516 (676)
Q Consensus       449 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---  516 (676)
                       ..++..++.++...|++..|...+.+++...+        .....+..+|.++...|+++.+...+.+++...+..   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence             45678899999999999999999999986532        123467789999999999999999999999876543   


Q ss_pred             --HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---
Q 005808          517 --KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---  584 (676)
Q Consensus       517 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---  584 (676)
                        ...+...+..+...+++.++...+.++....+       ....++..++.++...|++++|...+.+++...+.+   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence              45677889999999999999999998877532       235677888999999999999999999998876543   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808          585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLG------IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (676)
Q Consensus       585 -~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (676)
                       ...+..+|.++...|++++|...+++++.      ..|....++..+|.+|...|++++|...+++++++.+.
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence             45677899999999999999999999974      34556789999999999999999999999999997653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.2e-16  Score=157.21  Aligned_cols=201  Identities=16%  Similarity=0.024  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----  448 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----  448 (676)
                      ...+..++..+...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+..    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            445667788888899999999999888764221        23466678888888888888888888888765543    


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----
Q 005808          449 -GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----  516 (676)
Q Consensus       449 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----  516 (676)
                       ..++...+..+...+++..+...+.++....+.       ...++..++.++...|+++.|...+++++...+.+    
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence             456667777888888888888888777654322       13356667777777778888887777777665543    


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (676)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (676)
                      ...+..+|.++...|++++|...+++++..      .|....++..+|.+|...|++++|+..+++++++.
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            345566777777777777777777777643      34446667777777777777777777777776643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.4e-17  Score=132.57  Aligned_cols=109  Identities=20%  Similarity=0.215  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005808           38 TARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL  116 (676)
Q Consensus        38 ~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l  116 (676)
                      +-+.++..+|..|+|++|+.+|+++|+.+ .++..|.++|.||+.+|++++|+..|.++++++|+++.+|+++|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            34568899999999999999999999999 56666999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCChHHHHHHHHH
Q 005808          117 GRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (676)
Q Consensus       117 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~l  146 (676)
                      |++++|+.+|+++++++|+.+.....+..+
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999998777666544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.68  E-value=4.5e-16  Score=134.68  Aligned_cols=113  Identities=19%  Similarity=0.094  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCC-----------------hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----------------IQDICNRAFCYSQLELHKHVIRDCDKALQL   98 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-----------------~~~~~~ra~~~~~~g~~~~A~~~~~~al~~   98 (676)
                      +..-+.+++.+|..|+|.+|+.+|++||...+.                 ...|+|+|.||+++|+|++|+.+|++||++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            345567889999999999999999999975411                 124789999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005808           99 DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (676)
Q Consensus        99 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~  148 (676)
                      +|+++++|+++|.+|..+|++++|+.+|+++++++|+++.....+..+..
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888766655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.5e-14  Score=141.70  Aligned_cols=190  Identities=9%  Similarity=-0.078  Sum_probs=148.0

Q ss_pred             CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcccHHHHHHHHH
Q 005808          464 ESVEAIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHL  541 (676)
Q Consensus       464 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~  541 (676)
                      ..++|...|++++.. .|.+...|..++.++...|+++.|...|++++...|.+. .+|..++......|+++.|..+|.
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            456777778888764 677777778888888888888888888888888777653 467777888888888888888888


Q ss_pred             HHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--
Q 005808          542 KAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--  618 (676)
Q Consensus       542 ~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  618 (676)
                      ++++..|.....+...+.... ..|+.+.|..+|++++...|.++..|...+..+...|+++.|..+|++++...|.+  
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            888888888777777776644 35778888888888888888888888888888888888888888888888766543  


Q ss_pred             --HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808          619 --IECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (676)
Q Consensus       619 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (676)
                        ..+|..........|+.+.+...++++.+..|+..
T Consensus       239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence              34677777777778888888888888888887664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.9e-16  Score=144.89  Aligned_cols=104  Identities=22%  Similarity=0.332  Sum_probs=96.0

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005808           33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (676)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~  111 (676)
                      +|++..-+.+++.+|..|+|++|+.+|++||+++ .++..|+++|.||+++|+|++|+..|++||+++|+++.+|+++|.
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            3566677788999999999999999999999999 666669999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhccCC
Q 005808          112 AFSALGRKEEALSVWEKGYEHALHQ  136 (676)
Q Consensus       112 ~~~~l~~~~~A~~~~~~al~~~~~~  136 (676)
                      +|..+|++++|+.+|++|++++|+.
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999997777644

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-15  Score=131.21  Aligned_cols=112  Identities=18%  Similarity=0.264  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  114 (676)
                      +..-+.+++.+|..|+|++|+.+|+++|+++ .++..|+++|.|++.+|++++|+..|++||+++|+++.+++++|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            3445578899999999999999999999999 666669999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005808          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELE  147 (676)
Q Consensus       115 ~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~  147 (676)
                      .+|++++|+.+|++++.++|+++.....+..+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999999999999999999999988766554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.6e-14  Score=138.88  Aligned_cols=223  Identities=8%  Similarity=-0.049  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Q 005808          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQ--------------RELEAAISDFTEAIQS-NPSAGEAWKRRGQARAA  461 (676)
Q Consensus       397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~  461 (676)
                      ...+..+|++++...|.++..|+..+..+...              +..++|...|++++.. .|.+...|..++.+...
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45577789999999999999998888766443              3458899999999975 78889999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccHHHHHHH
Q 005808          462 LGESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS-SIGEYKKAEEA  539 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~  539 (676)
                      .|+++.|...|++++...|.+. .+|..++......|+++.|...|.++++..|.+...+...+.... ..|+.+.|..+
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            9999999999999999998764 578999999999999999999999999999999999998887754 46899999999


Q ss_pred             HHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (676)
Q Consensus       540 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (676)
                      |++++...|.++..|..++..+...|+++.|..+|++++...|.+    ..+|..........|+.+.+..+++++.+..
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999977644    3577788888888899999999999999888


Q ss_pred             CCCH
Q 005808          616 PSNI  619 (676)
Q Consensus       616 p~~~  619 (676)
                      |...
T Consensus       272 ~~~~  275 (308)
T d2onda1         272 REEY  275 (308)
T ss_dssp             TTTT
T ss_pred             cccc
Confidence            7753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.1e-15  Score=131.05  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCC----------------hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 005808           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYE----------------IQDICNRAFCYSQLELHKHVIRDCDKALQL   98 (676)
Q Consensus        35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~----------------~~~~~~ra~~~~~~g~~~~A~~~~~~al~~   98 (676)
                      .+..-+.++..+|..|+|++|+.+|+++|...+.                ...|.|+|.||+++|+|++|+..|++||.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            3455567788999999999999999999987521                133789999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005808           99 DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (676)
Q Consensus        99 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~  148 (676)
                      +|+++.+++++|.+|..+|++++|+.+|+++++++|+++.....+..+..
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988776655543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.8e-16  Score=163.56  Aligned_cols=227  Identities=8%  Similarity=0.034  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808          399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (676)
Q Consensus       399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  478 (676)
                      +|+++|++++.+.|+.+.++..+|.++...|++++|   |++++..+|+....+...+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            566777777777777777777777777777766655   6666666665544433222221  12244556666655543


Q ss_pred             CC--CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Q 005808          479 EP--NSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (676)
Q Consensus       479 ~p--~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  555 (676)
                      ..  +... .....+.+....+.|+.|+..+.+++..+|.+...+..+|.++...|++++|+..+.+++..+|.  .++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~  156 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLV  156 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHH
Confidence            32  1111 22223444555566666666666666666666666666777777777777777666666655443  4566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 005808          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (676)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (676)
                      .+|.++...|++++|+.+|.+++.++|+++.++..+|.++...|++.+|+.+|.+++...|..+.++.+|+.++.+.
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            66777777777777777777777777777777777777777777777777777777777666666666666665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.2e-15  Score=120.11  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +.-+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.+++.++|+++.+|+.+|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            34456788888889999999999999999999999899999999999999999999999999889988888888999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (676)
                      .+|++++|+..|+++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999988888888888877664

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=9.8e-15  Score=141.56  Aligned_cols=197  Identities=14%  Similarity=0.064  Sum_probs=128.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 005808          456 GQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYL  523 (676)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l  523 (676)
                      |.+|...|++++|+..|.+++.+.+      ....++..+|.+|...|++++|+..+++++.+.+..      ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            4555566666666666666655421      113456666777777777777777777766654333      3456666


Q ss_pred             HHHHHH-cccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH-------HHHH
Q 005808          524 GLALSS-IGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYH  589 (676)
Q Consensus       524 a~~~~~-~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~  589 (676)
                      |.++.. .|++++|+.+|++++++.+.      ...++..+|.++...|++++|+..|++++...+...       ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            766644 57788888888777766432      245677888888888888888888888887766442       4566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHHH--hccHHHHHHHHHHHHhhCCCc
Q 005808          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-----CLYLRASCYHA--IGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~  652 (676)
                      ..+.++...|++..|...++++.+.+|....     ....+..++..  .+.+.+|+..|.++.+++|-.
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~  273 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHH
Confidence            7788888888888888888888888876443     23344444433  345888888888877776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.3e-14  Score=140.67  Aligned_cols=196  Identities=16%  Similarity=0.132  Sum_probs=139.4

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHH
Q 005808          422 GTARAFQRELEAAISDFTEAIQSN------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHER  489 (676)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l  489 (676)
                      |.+|...|++++|+..|.+++++.      +....++..+|.+|...|++++|+..+++++.+.+..      ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            667777777777777777777652      1224567777888888888888888888887764433      4467777


Q ss_pred             HHHHHh-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHH
Q 005808          490 GIVNFK-FKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWG  555 (676)
Q Consensus       490 a~~~~~-~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  555 (676)
                      |.++.. .|++++|+..+++++.+.+.      ...++..+|.++...|++++|+..|++++...+..       ...+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            777754 58888888888888766332      13457778888888999999999988888876654       34567


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH-----HHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCC
Q 005808          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSK-----AYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~  617 (676)
                      ..+.++...|++..|...++++++.+|....     ....+..++..  .+.+.+|+..|+++.+++|.
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence            7888888889999999999998888875433     33445455444  35689999999888887654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.61  E-value=6.5e-15  Score=129.63  Aligned_cols=114  Identities=20%  Similarity=0.180  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccC----------------ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSY----------------EIQDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~----------------~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~   99 (676)
                      +..-+.+++.+|..|+|.+|+.+|++||...+                ....|.|+|.||+++|+|++|+.+|++|+.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            45566788999999999999999999986421                11237899999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 005808          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (676)
Q Consensus       100 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~  149 (676)
                      |+++++++++|.+|..+|++++|+.+|+++++++|+.+.....+..+...
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887766555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.1e-16  Score=164.24  Aligned_cols=227  Identities=10%  Similarity=-0.051  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005808          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (676)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (676)
                      +|+++|++|+++.|+..+++..+|.++...|++++|   |++++..+|+....+...+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999876   8999999987665543333222  22356778888887765


Q ss_pred             CC--CCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHH
Q 005808          513 DK--ENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (676)
Q Consensus       513 ~~--~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  589 (676)
                      ..  +.. .....++.+....+.|+.|+..+.+++..+|.+...+..+|..+...|++++|+..+.+++..++  ..++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~  156 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV  156 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence            42  222 22334566777789999999999999999999999999999999999999999999999987766  46788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV  666 (676)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  666 (676)
                      .+|.++...|++++|+.+|+++++++|++..++..+|.++...|++.+|+.+|.+++..+|..+.++.+++..+-+.
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998877543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.1e-14  Score=128.52  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-----------------CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-----------------YEIQDICNRAFCYSQLELHKHVIRDCDKALQL   98 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-----------------~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~   98 (676)
                      +..-+..+..+|..|+|.+|+..|+++|+..                 .....+.|+|.|+.++|+|++|+..|++||++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            3445567788999999999999999998632                 23334789999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 005808           99 DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (676)
Q Consensus        99 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~  149 (676)
                      +|+++++|+++|.+|..+|++++|+.+|+++++++|+.+.....+..+...
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887766555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-14  Score=129.17  Aligned_cols=157  Identities=17%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (676)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  567 (676)
                      ..|..+...|+|+.|++.|.+   +.|.++.+|+++|.++..+|++++|+..|+++++++|+++.+|.++|.++..+|++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            345555555555555555543   23344455555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      ++|+..|++++...+.+...                  .+....+.......++++.+|.++..+|++++|+..+.++++
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~------------------~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLI------------------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEE------------------ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCccCchH------------------HHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            55555555555433221000                  000000000011135566666666677777777777777766


Q ss_pred             hCCCcHHHHHHHHHHHHH
Q 005808          648 LELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       648 ~~p~~~~~~~~~~~~~~~  665 (676)
                      +.|+........++...+
T Consensus       149 ~~~~~~~~~~~~Al~~~~  166 (192)
T d1hh8a_         149 MKSEPRHSKIDKAMECVW  166 (192)
T ss_dssp             TCCSGGGGHHHHHHHHHH
T ss_pred             cCCCcchHHHHHHHHHHH
Confidence            666654444444444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-14  Score=121.19  Aligned_cols=107  Identities=16%  Similarity=0.194  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh-------HHH
Q 005808           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYI  107 (676)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~  107 (676)
                      +...+..+..+|..|+|++|+.+|+++|+++ .++.++.|+|.||.++|+|++|+.+|++||+++|++..       +|+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4566778899999999999999999999999 66777999999999999999999999999999998764       788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 005808          108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF  143 (676)
Q Consensus       108 ~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~  143 (676)
                      ++|.++..++++++|+..|++++..++. +.....+
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            8999999999999999999999988765 3444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.1e-14  Score=123.38  Aligned_cols=124  Identities=21%  Similarity=0.229  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +..+...|..++..|+|++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCCHHHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNF--KFKDFNAAVE  504 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~~A~~  504 (676)
                      .+|++++|+..+++++...|+++.++..++.+..  ..+.+++|+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888887777666543  2333444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.7e-14  Score=125.82  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      -.++..|..+...|+|++|+..|.++   .|.++.+|+++|.++..+|++++|+..|+++++++|+++.+|..+|.++..
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            34567899999999999999999864   566789999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808          462 LGESVEAIQDLSKALEFEPNS----------------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (676)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (676)
                      +|++++|+..|++++...+.+                .++++.+|.++...|++++|++.+.+++...|..
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999999999998765533                3567777777777888888888777777777653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=4.8e-14  Score=128.59  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  459 (676)
                      ++..+...|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|.++++++|++..+|+.+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCC
Q 005808          460 AALGESVEAIQDLSKALEFEPNS  482 (676)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~  482 (676)
                      ..+|++++|+..|++++.+.|.+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCccc
Confidence            77777777777777777766544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.45  E-value=2.1e-11  Score=115.97  Aligned_cols=226  Identities=18%  Similarity=0.164  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005808          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERG  490 (676)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  490 (676)
                      |.+++.+|..++..+++.+|+.+|+++.+.  .+..+++.+|.+|..    ..++..|..++..+....  ++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            445555555555555555555555555432  344455555555544    344555555555544332  344444444


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808          491 IVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (676)
Q Consensus       491 ~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  562 (676)
                      .++..    ..+.+.|...++.+....  ...+...++..+..    ......+...+.+...  +.+...+..+|.++.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~  153 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhc
Confidence            44432    334555555555555432  23333444444433    2334455555554433  334455566666665


Q ss_pred             H----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH---
Q 005808          563 D----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA---  631 (676)
Q Consensus       563 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---  631 (676)
                      .    ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.  .++.+++.||.+|..   
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g  229 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEG  229 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSS
T ss_pred             cCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCC
Confidence            4    3445566666666553  3456677777777766    55777777777777765  346777777777764   


Q ss_pred             -hccHHHHHHHHHHHHhhCCCc
Q 005808          632 -IGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       632 -~g~~~~A~~~~~~al~~~p~~  652 (676)
                       ..++++|.++|+++.+..+..
T Consensus       230 ~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         230 VTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             SSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CccCHHHHHHHHHHHHHCcCHH
Confidence             336777888887777766544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.43  E-value=4.4e-11  Score=113.69  Aligned_cols=226  Identities=17%  Similarity=0.143  Sum_probs=188.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRR  455 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l  455 (676)
                      +|..++.+|..++..+++.+|+.+|+++.+.  .++.+++.+|.++..    ..++..|..++..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            4789999999999999999999999999765  578999999999987    67999999999998764  467788888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808          456 GQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (676)
Q Consensus       456 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (676)
                      |.++..    .++.+.|...++++....+  ......++..+..    ......|...+.+...  +.+...+..+|.++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~  152 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhh
Confidence            888765    4678999999999988654  5566666766664    4567788888887655  56788899999999


Q ss_pred             HH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH--
Q 005808          528 SS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--  597 (676)
Q Consensus       528 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--  597 (676)
                      ..    ..+...+..+++.+.+  +.++.+.+.+|.+|..    ..++++|+.+|.++.+.  .++.+++.+|.+|..  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred             ccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence            86    4567788888888775  4678999999999987    67899999999999877  468899999999986  


Q ss_pred             --cCCHHHHHHHHHHhhcCCCC
Q 005808          598 --LGQHKKAIKDLSSGLGIDPS  617 (676)
Q Consensus       598 --~g~~~~A~~~~~~al~~~p~  617 (676)
                        ..++.+|+.+|+++......
T Consensus       229 g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         229 GVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCccCHHHHHHHHHHHHHCcCH
Confidence              45899999999999887654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-12  Score=112.69  Aligned_cols=138  Identities=20%  Similarity=0.156  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  562 (676)
                      ...+...|..++..|++++|+..|++++...|.........          ....         .+....++.++|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~----------~~~~---------~~~~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE----------AQKA---------QALRLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH----------HHHH---------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH----------Hhhh---------chhHHHHHHHHHHHHH
Confidence            34555667777777777777777777776655432211000          0000         0011345778899999


Q ss_pred             HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (676)
Q Consensus       563 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (676)
                      .+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+..
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998887777665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.41  E-value=1.3e-12  Score=105.64  Aligned_cols=94  Identities=19%  Similarity=0.056  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 005808          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (676)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (676)
                      .++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            34677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccHHHHHHHHHHHH
Q 005808          633 GEYREAIKDYDAAL  646 (676)
Q Consensus       633 g~~~~A~~~~~~al  646 (676)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            88888888888765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=1.4e-12  Score=105.48  Aligned_cols=95  Identities=17%  Similarity=0.171  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  461 (676)
                      ...+..|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 005808          462 LGESVEAIQDLSKAL  476 (676)
Q Consensus       462 ~g~~~~A~~~~~~al  476 (676)
                      .|++++|++.+++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-12  Score=105.30  Aligned_cols=108  Identities=15%  Similarity=0.008  Sum_probs=76.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHH
Q 005808          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSN--IECLYLRASCYH  630 (676)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~  630 (676)
                      .++..+...+++++|.+.|++++..+|.++.+++++|+++...+   ++++|+..|++++..+|.+  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            45556666777777777777777777777777777777776543   4445777777777766554  346777777777


Q ss_pred             HhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808          631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (676)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (676)
                      .+|++++|+.+|+++++++|++..+...+..+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            777777777777777777777777766555444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.38  E-value=6.8e-12  Score=107.83  Aligned_cols=80  Identities=20%  Similarity=0.114  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (676)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (676)
                      .++.++|.+|.++|++++|+..+++++.++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+.-+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999988777766543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=6.8e-12  Score=110.15  Aligned_cols=90  Identities=18%  Similarity=0.134  Sum_probs=46.6

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005808          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (676)
Q Consensus       547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  626 (676)
                      .|....++.++|.++...|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhccHH
Q 005808          627 SCYHAIGEYR  636 (676)
Q Consensus       627 ~~~~~~g~~~  636 (676)
                      .+........
T Consensus       153 ~~~~~l~~~~  162 (169)
T d1ihga1         153 KVKQKIKAQK  162 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5544444333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-12  Score=106.01  Aligned_cols=111  Identities=14%  Similarity=0.008  Sum_probs=73.9

Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHH
Q 005808          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRF--SKAYHLRGLLLH  596 (676)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~  596 (676)
                      .++..+...+++++|.+.|++++..+|.++.+++++|.++...+   ++++|+..|++++..+|..  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            34555666667777777777777777777777777777766533   3445777777777665543  346677777777


Q ss_pred             HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 005808          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (676)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (676)
                      ..|++++|+.+|+++++++|++..+...++.+..+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            777777777777777777777777766666665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.36  E-value=1.6e-11  Score=107.47  Aligned_cols=146  Identities=23%  Similarity=0.259  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (676)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  562 (676)
                      ...+...|..++..|+|.+|+..|.+++...+.......          ....         ...+....++.++|.+|.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~----------~~~~---------~~~~~~~~~~~Nla~~~~   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE----------KESK---------ASESFLLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH----------HHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch----------hhhh---------hcchhHHHHHHhHHHHHH
Confidence            345566677777777777777777766654332210000          0000         001112456778999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHH-HHHH
Q 005808          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE-AIKD  641 (676)
Q Consensus       563 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~  641 (676)
                      .+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|+++.++..++.+....+.+.+ ..+.
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~  155 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRT  155 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988877776543 4444


Q ss_pred             HHHHHh
Q 005808          642 YDAALD  647 (676)
Q Consensus       642 ~~~al~  647 (676)
                      |.+.++
T Consensus       156 ~~~~f~  161 (168)
T d1kt1a1         156 YANMFK  161 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=9.8e-13  Score=113.83  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHcccCC-------------hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----
Q 005808           39 ARIELAKLCSLRNWSKAIRILDSLLAQSYE-------------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPT----  101 (676)
Q Consensus        39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-------------~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~----  101 (676)
                      ...++...|..|+|++|+..|++||++.++             ..+|.|+|.||..+|+|++|+.+++++|.+.|.    
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            345677889999999999999999998733             245889999999999999999999999988653    


Q ss_pred             -------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChH
Q 005808          102 -------LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (676)
Q Consensus       102 -------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~  138 (676)
                             +..+++++|.+|..+|++++|+.+|++|+++.|+.+.
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence                   3458999999999999999999999999888665443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.28  E-value=9.7e-12  Score=105.48  Aligned_cols=123  Identities=17%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (676)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~  460 (676)
                      +.+.+.|++|+..|+++++.+|+++.+++.+|.++...++          +++|+..|+++++++|+++.+++++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            4456678899999999999999999999999988876544          456666666666666666666666666665


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 005808          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (676)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (676)
                      .+|++.             +..          ....+.+++|+++|++++.++|++...+..++.+....+.+.++
T Consensus        87 ~~g~~~-------------~~~----------~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          87 SFAFLT-------------PDE----------TEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHC-------------CCH----------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             Hcccch-------------hhH----------HHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            554210             000          00012345666666666666666666666666665555444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.28  E-value=8.3e-12  Score=105.93  Aligned_cols=39  Identities=15%  Similarity=0.111  Sum_probs=21.3

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (676)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (676)
                      .+.+.|++|+..|+++++++|+++.+++.+|.++...++
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~   46 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ   46 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhh
Confidence            344455555555555555555555555555555554433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.7e-11  Score=98.93  Aligned_cols=99  Identities=14%  Similarity=0.115  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-------HHHHH
Q 005808          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-------EAWKR  454 (676)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~  454 (676)
                      ..+-.+|..++..|+|++|+.+|+++++.+|+++.++..+|.++..+|++++|+..++++++++|.+.       .++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            44557788888888888888888888888888888888888888888888888888888888877654       35556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005808          455 RGQARAALGESVEAIQDLSKALEFEP  480 (676)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p  480 (676)
                      +|.++...+++++|+.+|++++..++
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            66666777777777777777776665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-09  Score=84.40  Aligned_cols=81  Identities=15%  Similarity=0.025  Sum_probs=62.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 005808          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (676)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (676)
                      +++.++.+|..++..|+|.+|+..|+++++..|.+       ..++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            46777888888888888888888888888764432       56777888888888888888888888888888888877


Q ss_pred             HHHHHHHH
Q 005808          453 KRRGQARA  460 (676)
Q Consensus       453 ~~la~~~~  460 (676)
                      .+++.+..
T Consensus        84 ~Nl~~~~~   91 (95)
T d1tjca_          84 GNLKYFEY   91 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=9.6e-09  Score=89.73  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=81.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCCh-----------------------hHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 005808           41 IELAKLCSLRNWSKAIRILDSLLAQSYEI-----------------------QDICNRAFCYSQLELHKHVIRDCDKALQ   97 (676)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-----------------------~~~~~ra~~~~~~g~~~~A~~~~~~al~   97 (676)
                      ..+..++..|++++|+..|.+|+.+.++.                       ..+.++|.++..+|++++|+..|+++++
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            45567899999999999999999986322                       2357899999999999999999999999


Q ss_pred             hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808           98 LDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus        98 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                      ++|.+..+|..++.+|..+|++.+|+..|+++
T Consensus        96 ~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          96 EHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.7e-09  Score=82.58  Aligned_cols=75  Identities=9%  Similarity=-0.074  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (676)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (676)
                      -++.+|.++.+.|+|.+|+.+|+++++..|.       ...++.++|.++.++|++++|+.+|+++++++|+++.++.++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3445555555555555555555555544222       235556666666666666666666666666666666655555


Q ss_pred             HH
Q 005808          660 CL  661 (676)
Q Consensus       660 ~~  661 (676)
                      +.
T Consensus        87 ~~   88 (95)
T d1tjca_          87 KY   88 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.94  E-value=2.3e-10  Score=98.56  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=69.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCcCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-------C-
Q 005808          558 TQFYQDLANSEKALECLQQVLYIDKRF------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-------S-  617 (676)
Q Consensus       558 a~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~-  617 (676)
                      |..++..|+|++|+..|++++++.|..            ..+|.++|.+|..+|++++|+..+++++.+.|       + 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            555666667777777777776655432            34677788888888888888888888876532       1 


Q ss_pred             ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808          618 ---NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (676)
Q Consensus       618 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (676)
                         ...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence               23467888999999999999999999999887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.84  E-value=4.4e-09  Score=98.12  Aligned_cols=129  Identities=12%  Similarity=0.003  Sum_probs=93.8

Q ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q 005808          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI  605 (676)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  605 (676)
                      -....|++++|+..++++++.+|.+...+..++.++...|++++|+..|+++++.+|++...+..++.++...+...++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            34556777777777777777777777777778888877888888888888887777777777777777776666666555


Q ss_pred             HHHHHhhc-CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808          606 KDLSSGLG-IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (676)
Q Consensus       606 ~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (676)
                      ..+..... ..|.....+...+.++...|++++|...++++.+..|+.+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            54443332 24555566677778888888888888888888888887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.82  E-value=4.2e-09  Score=98.25  Aligned_cols=130  Identities=13%  Similarity=0.029  Sum_probs=97.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005808          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (676)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  467 (676)
                      +...+..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            44567788888888888888888888888888888888888888888888888888888888888888877776666555


Q ss_pred             HHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808          468 AIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (676)
Q Consensus       468 A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (676)
                      +...+.+... ..|.....+...+..+...|++++|...+.++.+..|..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            5443333222 2344445666677778888888888888888888777654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=3.5e-07  Score=79.56  Aligned_cols=115  Identities=10%  Similarity=-0.083  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (676)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  564 (676)
                      .+...|......|++++|+..|.+++.+.+.........       +.     -.......+.+....++..++.++...
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~~~   80 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEIAC   80 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            344455555555555555555555555554432111000       00     001111222333455566666666666


Q ss_pred             CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (676)
Q Consensus       565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (676)
                      |++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=6.2e-06  Score=64.58  Aligned_cols=79  Identities=19%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 005808          585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (676)
Q Consensus       585 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (676)
                      ..+.+.+|+++.+..   +..+|+..++.+++.+|.+. +.++.+|..|.++|++++|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            567788888887664   44578888888888777664 78888888888888888888888888888888888765544


Q ss_pred             HHH
Q 005808          661 LAF  663 (676)
Q Consensus       661 ~~~  663 (676)
                      .+.
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=3.6e-05  Score=60.15  Aligned_cols=81  Identities=11%  Similarity=0.042  Sum_probs=65.4

Q ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808          378 SISVDFRLSRGIAQVNEG---KYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (676)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (676)
                      ..+++..|..|+++....   +.++++.+++.+++.+|.+ .++++.+|..++..|+|++|+.+++++++++|++..+..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            345788888888888654   4568999999999888866 478899999999999999999999999999999887765


Q ss_pred             HHHHH
Q 005808          454 RRGQA  458 (676)
Q Consensus       454 ~la~~  458 (676)
                      ..-.+
T Consensus       112 L~~~I  116 (124)
T d2pqrb1         112 LKSMV  116 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=6.4e-05  Score=61.29  Aligned_cols=111  Identities=18%  Similarity=0.192  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 005808          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKD  607 (676)
Q Consensus       532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  607 (676)
                      ++++|+.+|+++.+..  ++.+...++.  ....+.++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            4555555555555442  2333334432  2245666777777776543  456667777777665    4467777777


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCC
Q 005808          608 LSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLEL  650 (676)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  650 (676)
                      |+++.+.  .++.+.+.||.+|..    ..+..+|..+|+++.+...
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            7777654  346677777777765    3567777777777776543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.89  E-value=0.00012  Score=59.64  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 005808          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQD  471 (676)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  471 (676)
                      |+++|+.+|+++.+..  ++.+.+.++.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            4555555555555443  2333333332  1233445555555554432  344444555554443    2334445555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 005808          472 LSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVK  511 (676)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~  511 (676)
                      |+++.+..  ++.+.+.+|.+|..    ..++.+|+.+|+++.+
T Consensus        82 ~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          82 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            55444432  34444444444443    2344444444444443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.22  Score=48.96  Aligned_cols=268  Identities=10%  Similarity=-0.056  Sum_probs=160.1

Q ss_pred             hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcccHHHHH
Q 005808          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------------------PEALIGRGTARAFQRELEAAI  435 (676)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------------~~~~~~la~~~~~~g~~~~A~  435 (676)
                      ....|.+....+..+.+....|+..+|...+..+.......                  +..+..........|++..|.
T Consensus        95 ~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~  174 (450)
T d1qsaa1          95 SPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVT  174 (450)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHH
Confidence            34566778877888888888999888888877765433222                  333344555555666666555


Q ss_pred             HHHHHH-------------HHhCC-----------CcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-
Q 005808          436 SDFTEA-------------IQSNP-----------SAGE--AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-  488 (676)
Q Consensus       436 ~~~~~a-------------l~~~~-----------~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-  488 (676)
                      ..+..+             +..+|           .+..  .....+.......+.+.|...+.......+.....+.. 
T Consensus       175 ~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~  254 (450)
T d1qsaa1         175 VLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQEL  254 (450)
T ss_dssp             HHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHH
Confidence            444311             11122           1111  12223333344467777877777766655554443322 


Q ss_pred             ---HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808          489 ---RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (676)
Q Consensus       489 ---la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  565 (676)
                         ++..+...+..+.+...+........+.......++ .....+++..+...+..+-......+...+.+|..+...|
T Consensus       255 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G  333 (450)
T d1qsaa1         255 RDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG  333 (450)
T ss_dssp             HHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcC
Confidence               223333456667777777766555444333333333 4455678888877776654433344677788888888888


Q ss_pred             CHHHHHHHHHHHHhcCcC--------------------------c---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808          566 NSEKALECLQQVLYIDKR--------------------------F---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (676)
Q Consensus       566 ~~~~A~~~~~~al~~~~~--------------------------~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (676)
                      +.+.|...|..+... ++                          .   ...-...+..+...|....|...+..++... 
T Consensus       334 ~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-  411 (450)
T d1qsaa1         334 REAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-  411 (450)
T ss_dssp             CHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             ChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-
Confidence            888888888877532 11                          0   0112345666777788888877777766532 


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808          617 SNIECLYLRASCYHAIGEYREAIKDYDAA  645 (676)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (676)
                       ++.-...++.+..+.|.++.|+....++
T Consensus       412 -~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         412 -SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence             3556667777777888888777666655

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.25  Score=48.45  Aligned_cols=262  Identities=11%  Similarity=-0.025  Sum_probs=142.6

Q ss_pred             HHhhccCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808          371 TRISKSKSISVDFRLSR---GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (676)
Q Consensus       371 ~~~~~~~~~~~~~~~~~---a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (676)
                      ...+...|..|......   -..+...+++...+..+    ...|.+....+..+.+....|+..+|...+..+......
T Consensus        59 ~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~  134 (450)
T d1qsaa1          59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS  134 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence            34455555555443222   23445556665544333    235666676777777777777777777766665543322


Q ss_pred             cHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808          448 AGE------------------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (676)
Q Consensus       448 ~~~------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (676)
                      .+.                  .+..........|++..|...+..   +.++..........+...   ....    ...
T Consensus       135 ~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~---l~~~~~~~~~a~~~l~~~---p~~~----~~~  204 (450)
T d1qsaa1         135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ---MPADYQTIASAIISLANN---PNTV----LTF  204 (450)
T ss_dssp             CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT---CCGGGHHHHHHHHHHHHC---GGGH----HHH
T ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh---CChhHHHHHHHHHHHHhC---hHhH----HHH
Confidence            221                  111222333334444444333221   111111111111111111   1111    111


Q ss_pred             HHhCCCCHH--HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808          510 VKLDKENKS--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH----LTQFYQDLANSEKALECLQQVLYIDKR  583 (676)
Q Consensus       510 l~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----la~~~~~~~~~~~A~~~~~~al~~~~~  583 (676)
                      ....+.+..  .....+..-....+.+.|...+.......+.....+..    ++..+...+..+.+...+........+
T Consensus       205 ~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~  284 (450)
T d1qsaa1         205 ARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS  284 (450)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC
T ss_pred             HhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc
Confidence            122233322  22334444445568888888888876655444333332    333334456778888888777665555


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (676)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (676)
                      .......++. ....+++..+...+..........+...+.+|..+..+|+.++|..+|..+..
T Consensus       285 ~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         285 TSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            4444444444 55678999999988876554445678889999999999999999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.66  E-value=0.19  Score=46.73  Aligned_cols=241  Identities=15%  Similarity=0.045  Sum_probs=113.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005808          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA  468 (676)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  468 (676)
                      .++...++++.|...+.+.     +++..|......+........+... ...   ....++-.......+...|.+++.
T Consensus        48 ~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~L  118 (336)
T d1b89a_          48 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEEL  118 (336)
T ss_dssp             HHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHH
Confidence            4444555555555554443     3455555555555555444332110 000   112233334455556666666666


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCC-------HHHHHHHHHHHHHcccHHHHHHHH
Q 005808          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKEN-------KSAYTYLGLALSSIGEYKKAEEAH  540 (676)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~  540 (676)
                      +.+++.++...+.+...+..++.+|.+.+ .++-.+.++.... .++..       ...|-.+..+|.+.|++++|+..+
T Consensus       119 i~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         119 ITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence            66666666666666666666666665543 3333333332211 11000       011233444455555555554443


Q ss_pred             HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH----------HHHHHHHHHcCCHHHHHHHHHH
Q 005808          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY----------HLRGLLLHGLGQHKKAIKDLSS  610 (676)
Q Consensus       541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~la~~~~~~g~~~~A~~~~~~  610 (676)
                      -.    .|.+..-....-.++.+..+.+..-+.+.-.++..|....-.          ..+.....+.++..-...+++.
T Consensus       198 i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~  273 (336)
T d1b89a_         198 MN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS  273 (336)
T ss_dssp             HH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred             HH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHH
Confidence            22    122221223333445556666555555555555555432111          1122223333333333444444


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (676)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (676)
                      ...  .++..+...++.+|...++++.    +++.++.+
T Consensus       274 v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~~  306 (336)
T d1b89a_         274 VQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDAY  306 (336)
T ss_dssp             HHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHC
T ss_pred             HHH--cChHHHHHHHHHHHhCcchhHH----HHHHHHHh
Confidence            333  3346788889999999998744    45555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.42  E-value=0.36  Score=44.76  Aligned_cols=172  Identities=18%  Similarity=0.152  Sum_probs=99.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 005808          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (676)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  465 (676)
                      ..|..+...|.|+.|..+|...    .    -+-.+..++...+++..|...+.+.     ++..+|......+......
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~----~----d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             ----------CTTTHHHHHHHT----T----CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC----C----CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHH
Confidence            4456666777777777777643    1    1333446667778888887777654     4566777777777776665


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH-H
Q 005808          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA-I  544 (676)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l  544 (676)
                      .-+.-. .  + ....+++-.......|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-++.++.. .
T Consensus        86 ~la~i~-~--~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~  160 (336)
T d1b89a_          86 RLAQMC-G--L-HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS  160 (336)
T ss_dssp             HHHHHT-T--T-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST
T ss_pred             HHHHHH-H--H-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc
Confidence            443211 0  0 111345555566777777888888888888887777777777777777776644 44555555442 1


Q ss_pred             hcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808          545 QLDRNF-------LEAWGHLTQFYQDLANSEKALECLQ  575 (676)
Q Consensus       545 ~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~  575 (676)
                      ..++..       ...|-.+..+|.+.|++++|+..+-
T Consensus       161 ~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i  198 (336)
T d1b89a_         161 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM  198 (336)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH
Confidence            122211       1224556677778888888776543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=84.67  E-value=3.7  Score=30.91  Aligned_cols=102  Identities=10%  Similarity=0.074  Sum_probs=68.0

Q ss_pred             hhhcccchhhhhhhhhHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcccCChhHHHHHHHHH-HHhhCHHHHHHHHHHH
Q 005808           20 ICEIDELVRVDSVMASAITARIELAKLC---SLRNWSKAIRILDSLLAQSYEIQDICNRAFCY-SQLELHKHVIRDCDKA   95 (676)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~-~~~g~~~~A~~~~~~a   95 (676)
                      ||+++|-..++-+--    ---...+.|   ..++...-+.||-.+-..    .-|.++|.-+ ..+|+-++=-+.++..
T Consensus        41 ICNiidt~dC~~v~~----~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~----se~vdlALd~lv~~~kkd~Ld~i~~~l  112 (161)
T d1wy6a1          41 ICNLLESIDCRYMFQ----VLDKIGSYFDLDKCQNLKSVVECGVINNTL----NEHVNKALDILVIQGKRDKLEEIGREI  112 (161)
T ss_dssp             HHHHHHHCCHHHHHH----HHHHHGGGSCGGGCSCTHHHHHHHHHTTCC----CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eeecccccchHHHHH----HHHHHhhhcCchhhhcHHHHHHHHHHhcch----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            677766665544311    111223444   468888999998763222    2388898854 4555555544555655


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (676)
Q Consensus        96 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  129 (676)
                      ++-..-.+..+..+|.+|-+.|.-.+|-..+.+|
T Consensus       113 ~kn~~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1         113 LKNNEVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            6666667889999999999999999999999998