Citrus Sinensis ID: 005810

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670------
MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVDGPLVDTGDATKQPDGRTTSNGGAGAQPLNQLLLPAPAAANGSSPPAAVNPKIDLLSGDDYSSPKEDTSLALVPVGVPQPNTPVSSQQNALVLFDMFSDATNAPNSINTQPANMAGQPNSLAPQFHQQQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLALPQPTSPAYGMQSGGSLPPPPWEAQAADSSPVAGAQYPQQMQVTQVSVTHMQPVQSGAYPQVPQSVNGQVVGMYIQPITSNHLSPMNNQLGQSNQLVGMHPQQIQGGQYVGMLPHHMQAGQMALYHQQMYANQMAGYGYGQQPRPQYIEQQMYGLSLRDDSGLRNSSYQVSTSSYGTPMKASKPEDKLFGDLVDLAKIKPTKSTSTPGRAGSM
cHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccc
ccHHHHHHHccHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccEEEccccccccccccccccccccccccccHHHHcccHHHHHHcccccccccccccccc
mvnsmvdratsdmligpdwamNIEICdmlnhdpgqaKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQeafggprarypQYYAAYQELLRAGavfpqrsersapvftppqthpltsypqnfrnpehQQEAAEasaesefptlslTEIQNARGIMDVLAEMLNaldpnnkeglRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHesfasgksaqtaqtdkpkteskssealvdvdgplvdtgdatkqpdgrttsnggagaqplnqlllpapaaangssppaavnpkidllsgddysspkedtslalvpvgvpqpntpvssqqNALVLFDMfsdatnapnsintqpanmagqpnslapqfhqqqnfqtpeaglyqngtapnmgspryeqsiyaqgsgpawngqlalpqptspaygmqsggslppppweaqaadsspvagaqypqqmqVTQVSVthmqpvqsgaypqvpqsvngqVVGMYIqpitsnhlspmnnqlgqsnqlvgmhpqqiqggqyvgmlphhmqAGQMALYHQQMYANQmagygygqqprpqyIEQQMYglslrddsglrnssyqvstssygtpmkaskpedklfgdlvdlakikptkststpgragsm
MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKkrigsrnskvqLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIarkkpdthvKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQEAAEAsaesefptLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHEsfasgksaqtaqtdkpkteskssealvdvdgplvdtGDATKQPDGRTTSNGGAGAQPLNQLLLPAPAAANGSSPPAAVNPKIDLLSGDDYSSPKEDTSLALVPVGVPQPNTPVSSQQNALVLFDMFSDATNAPNSINTQPANMAGQPNSLAPQFHQQQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLALPQPTSPAYGMQSGGSLPPPPWEAQAADSSPVAGAQYPQQMQVTQVSVTHMQPVQSGAYPQVPQSVNGQVVGMYIQPITSNHLSPMNNQLGQSNQLVGMHPQQIQGGQYVGMLPHHMQAGQMALYHQQMYANQMAGYGYGQQPRPQYIEQQMYGLSLRDDSGLRNSSYQVSTssygtpmkaskpeDKLFGDLVdlakikptkststpgragsm
MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGprarypqyyaayqELLRAGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQeaaeasaeseFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVDGPLVDTGDATKQPDGRTTSNggagaqplnqlllpapaaangssppaaVNPKIDLLSGDDYSSPKEDTSLALVPVGVPQPNTPVSSQQNALVLFDMFSDATNAPNSINTQPANMAGQPNSLAPQFHQQQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLALPQPTSPAYGMQSGGSLPPPPWEAQAADSSPVAGAQYPQQMQVTQVSVTHMQPVQSGAYPQVPQSVNGQVVGMYIQPITSNHLSPMNNQLGQSNQLVGMHPQQIQGGQYVGMLPHHMQAGQMALYHQQMYANQMAGYGYGQQPRPQYIEQQMYGLSLRDDSGLRNSSYQVSTSSYGTPMKASKPEDKLFGDLVDLAKIKPTKSTSTPGRAGSM
************MLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVF*************************************************TEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLL***************************************************************************************************************************LVLFDM*******************************************************************************************************************************************VNGQVVGMYIQPIT***********************QIQGGQYVGMLPHHMQAGQMALYHQQMYANQMAGYGYGQQ****YIE***Y************************************************************
MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK*P**HVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRA************************************************************************************************************DESLLCQGLQLNDDLQRLLA******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FGDLVDL******************
********ATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRN***************FPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESF**********************ALVDVDGPLVDTGDATKQPDGRTTSNGGAGAQPLNQLLLPAPA*********AVNPKIDLLSGDDYSSPKEDTSLALVPVGVPQPNTPVSSQQNALVLFDMFSDATNAPNSINTQPANMAGQPNSLAPQFHQQQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLALPQPTSPAYGMQSGGSLPPPPWEAQAADSSPVAGAQYPQQMQVTQVSVTHMQPVQSGAYPQVPQSVNGQVVGMYIQPITSNHLSPMNNQLGQSNQLVGMHPQQIQGGQYVGMLPHHMQAGQMALYHQQMYANQMAGYGYGQQPRPQYIEQQMYGLSLRDDSGLRNSSYQVSTSSYGTPMKASKPEDKLFGDLVDLAKIKP*************
*************LIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTP*************************SAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASG*************************************************************************************************************************************************************PEAGLYQNGTAPNMGSPRYEQS***QGSGPAW**********SP********SLPP****************************************PQV******QVVGMYIQPITSNHLSPMNNQLGQSNQLVGMHPQQIQGGQYVGMLPHHMQAGQMALYHQQMYANQMAGYGYGQQPRPQYIEQQMYGLSLRDDSGLRN****VSTSS*******SKP*DKLFGDLVDLAKIK**************
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MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVDGPLVDTGDATKQPDGRTTSNGGAGAQPLNQLLLPAPAAANGSSPPAAVNPKIDLLSGDDYSSPKEDTSLALVPVGVPQPNTPVSSQQNALVLFDMFSDATNAPNSINTQPANMAGQPNSLAPQFHQQQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLALPQPTSPAYGMQSGGSLPPPPWEAQAADSSPVAGAQYPQQMQVTQVSVTHMQPVQSGAYPQVPQSVNGQVVGMYIQPITSNHLSPMNNQLGQSNQLVGMHPQQIQGGQYVGMLPHHMQAGQMALYHQQMYANQMAGYGYGQQPRPQYIEQQMYGLSLRDDSGLRNSSYQVSTSSYGTPMKASKPEDKLFGDLVDLAKIKPTKSTSTPGRAGSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query676 2.2.26 [Sep-21-2011]
Q5SRX1507 TOM1-like protein 2 OS=Mu yes no 0.403 0.538 0.307 3e-32
Q68FJ8507 TOM1-like protein 2 OS=Xe N/A no 0.433 0.577 0.300 3e-32
Q6ZVM7507 TOM1-like protein 2 OS=Ho yes no 0.399 0.532 0.307 3e-32
O88746492 Target of Myb protein 1 O no no 0.439 0.603 0.301 9e-32
O60784492 Target of Myb protein 1 O no no 0.468 0.644 0.298 4e-30
Q54GH3663 Target of Myb protein 1 O yes no 0.400 0.408 0.285 6e-28
O12940515 Target of Myb protein 1 O no no 0.400 0.526 0.299 5e-26
Q99LI8775 Hepatocyte growth factor- no no 0.207 0.180 0.361 4e-23
Q9JJ50776 Hepatocyte growth factor- no no 0.207 0.180 0.361 4e-23
Q0V8S0777 Hepatocyte growth factor- no no 0.207 0.180 0.361 6e-23
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 153/306 (50%), Gaps = 33/306 (10%)

Query: 2   VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALT 60
           V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT
Sbjct: 13  VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALT 72

Query: 61  LLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPR 117
           +LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF    
Sbjct: 73  VLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS-S 131

Query: 118 ARYPQYYAAYQELLRAGAVFPQRS-ERSAPVFTP----PQTHPLTSYPQNFRNPEHQQEA 172
                    Y+EL R G  FP    +  +P+ TP    P+  P  + P++   P      
Sbjct: 132 PDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGT 191

Query: 173 AEASAESEF-----PTLSLT---------------EIQNARGIMDVLAEMLNALDPNNKE 212
             +   + +     P LS+T               E+   RG   V++EML  + P  ++
Sbjct: 192 YSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQED 251

Query: 213 GLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFA---SG 269
               E++ +L   CR  + R+V L++  ++E +  + L +NDDL  +  ++E F    SG
Sbjct: 252 SSDLELLQELNRTCRAMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRYERFERYRSG 311

Query: 270 KSAQTA 275
           +S Q A
Sbjct: 312 RSVQNA 317
Probable role in protein transport. May regulate growth factor-induced mitogenic signaling.
Mus musculus (taxid: 10090)
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 Back     alignment and function description
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1 Back     alignment and function description
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 Back     alignment and function description
>sp|Q54GH3|TOM1_DICDI Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1 Back     alignment and function description
>sp|O12940|TOM1_CHICK Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2 Back     alignment and function description
>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2 Back     alignment and function description
>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1 Back     alignment and function description
>sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query676
255551022667 protein transporter, putative [Ricinus c 0.982 0.995 0.737 0.0
224142997674 predicted protein [Populus trichocarpa] 0.991 0.994 0.739 0.0
356507893666 PREDICTED: TOM1-like protein 1-like [Gly 0.976 0.990 0.687 0.0
351723159672 VHS and GAT domain protein [Glycine max] 0.964 0.970 0.695 0.0
356552639672 PREDICTED: uncharacterized protein LOC10 0.961 0.967 0.683 0.0
359476366663 PREDICTED: uncharacterized protein LOC10 0.973 0.992 0.703 0.0
359476368691 PREDICTED: uncharacterized protein LOC10 0.983 0.962 0.682 0.0
356515585666 PREDICTED: TOM1-like protein 1-like [Gly 0.976 0.990 0.681 0.0
449465131688 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.977 0.960 0.682 0.0
449513207697 PREDICTED: ADP-ribosylation factor-bindi 0.974 0.945 0.672 0.0
>gi|255551022|ref|XP_002516559.1| protein transporter, putative [Ricinus communis] gi|223544379|gb|EEF45900.1| protein transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/679 (73%), Positives = 557/679 (82%), Gaps = 15/679 (2%)

Query: 1   MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALT 60
           MVNSMV+RATSDMLIGPDWAMNIEICDM NHDP QAKDVVKGIKKRIGS++ KVQLLALT
Sbjct: 1   MVNSMVERATSDMLIGPDWAMNIEICDMCNHDPAQAKDVVKGIKKRIGSKSPKVQLLALT 60

Query: 61  LLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARY 120
           LLETI+KNCGDIVHMHVAE+++LHEMVKI +KKPD HVKEKIL LIDTWQEAFGG RARY
Sbjct: 61  LLETIVKNCGDIVHMHVAERDILHEMVKIVKKKPDFHVKEKILTLIDTWQEAFGGARARY 120

Query: 121 PQYYAAYQELLRAGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQEAAEASAESE 180
           PQYY AYQELLRAGAVFPQR+ERSAPVFTPPQT PL+SYPQN RN E +QE AE+SAESE
Sbjct: 121 PQYYTAYQELLRAGAVFPQRTERSAPVFTPPQTQPLSSYPQNLRNNEFRQEGAESSAESE 180

Query: 181 FPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNST 240
           FPTLSLTEIQNARGIMDVLAEML+A+DP NKEGLRQEVIVDLV+QCRTYKQRVVHLVNST
Sbjct: 181 FPTLSLTEIQNARGIMDVLAEMLSAIDPGNKEGLRQEVIVDLVEQCRTYKQRVVHLVNST 240

Query: 241 ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVDGPLVDT 300
           ADESLLCQGL LNDDLQR+LAKHE+ ASG S      +KPK + +S  AL+DV GPLVD 
Sbjct: 241 ADESLLCQGLALNDDLQRVLAKHEAIASGTS---GPAEKPKPKPESGGALLDV-GPLVDA 296

Query: 301 GDATKQPDGRTTSNGGAGAQPLNQLLLPAPAAANGSSPPAAVNPKIDLLSGDDYSSPKED 360
           GD  KQ D  + SN G     LNQLLLPAP A NG +   + NPK+DLLSGDD+SSPK +
Sbjct: 297 GDNHKQRDEGSASNPGV----LNQLLLPAPPATNGPTARTSANPKMDLLSGDDFSSPKTE 352

Query: 361 TSLALVPVGVPQPNTPVSSQQNALVLFDMFSDATNAPNSINTQPANMAGQPNSLAPQFHQ 420
           TSLALVPVG PQP TP  SQQNALVLFDMFSD+ N+PN +N QP +M+G  NS  PQ  Q
Sbjct: 353 TSLALVPVGEPQPATP-PSQQNALVLFDMFSDSNNSPNVVNVQPTHMSGLTNSSTPQVQQ 411

Query: 421 QQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLA-LPQPTSPAYGMQSGGS 479
           Q NF   EAG+Y NGTA N GSPRYE ++Y Q +GPAWNGQ+A   QP SP +G QS GS
Sbjct: 412 QHNFHPQEAGIYTNGTALNTGSPRYEHAVYMQSTGPAWNGQVAQQQQPASPVFGAQSSGS 471

Query: 480 LPPPPWEAQAADSSPVAGAQYPQQMQVTQVSVTHMQPVQSGAYPQVPQ-SVNGQVVGMYI 538
           LPPPPWEAQ AD SPVAG+QY  QMQ+TQV VTH QP+ SG YPQ PQ S +  VVGMYI
Sbjct: 472 LPPPPWEAQPADGSPVAGSQYSPQMQLTQVVVTHQQPMSSGMYPQGPQPSGSDHVVGMYI 531

Query: 539 QPITSNHLSPMNNQLGQSNQLVGMHPQQIQGGQYVGMLPHHMQAGQMA-LYHQQMYANQM 597
           QPIT   LS ++N + Q+NQ  G+ PQ +QGGQY+GMLP  MQAGQMA  Y  QMY NQM
Sbjct: 532 QPITGGQLSAIHNPVVQNNQF-GLQPQAVQGGQYMGMLPQPMQAGQMASAYPPQMYGNQM 590

Query: 598 AGYGYGQQPRPQYIEQQMYGLSLRDDSGLRNSSYQVSTSSYGTPMKASKPEDKLFGDLVD 657
           AGYGYGQQ   Q++EQ+MYGLS+RDD+GLRNSSYQVSTSSY    K SKPEDKLFGDLVD
Sbjct: 591 AGYGYGQQQGTQFLEQRMYGLSVRDDNGLRNSSYQVSTSSYVPLKKPSKPEDKLFGDLVD 650

Query: 658 LAKIKPTKSTSTPGRAGSM 676
           +AK KPTK  STP +AGSM
Sbjct: 651 IAKFKPTK--STPEKAGSM 667

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224142997|ref|XP_002324811.1| predicted protein [Populus trichocarpa] gi|222866245|gb|EEF03376.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507893|ref|XP_003522697.1| PREDICTED: TOM1-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|351723159|ref|NP_001237269.1| VHS and GAT domain protein [Glycine max] gi|82791812|gb|ABB90835.1| VHS and GAT domain protein [Glycine max] Back     alignment and taxonomy information
>gi|356552639|ref|XP_003544671.1| PREDICTED: uncharacterized protein LOC100809022 [Glycine max] Back     alignment and taxonomy information
>gi|359476366|ref|XP_003631826.1| PREDICTED: uncharacterized protein LOC100249280 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476368|ref|XP_002284083.2| PREDICTED: uncharacterized protein LOC100249280 isoform 1 [Vitis vinifera] gi|296081876|emb|CBI20881.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515585|ref|XP_003526479.1| PREDICTED: TOM1-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449465131|ref|XP_004150282.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101204650 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449513207|ref|XP_004164262.1| PREDICTED: ADP-ribosylation factor-binding protein GGA1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query676
TAIR|locus:2077808607 AT3G08790 [Arabidopsis thalian 0.423 0.471 0.657 3.3e-132
TAIR|locus:2027037506 AT1G21380 [Arabidopsis thalian 0.448 0.598 0.488 7.4e-84
TAIR|locus:2025297446 AT1G76970 "AT1G76970" [Arabido 0.371 0.562 0.522 5.1e-81
TAIR|locus:2057140671 AT2G38410 [Arabidopsis thalian 0.230 0.232 0.551 1.4e-68
TAIR|locus:2180982542 AT5G01760 [Arabidopsis thalian 0.692 0.863 0.322 2.2e-59
TAIR|locus:2160654447 AT5G63640 [Arabidopsis thalian 0.396 0.599 0.370 7.1e-45
TAIR|locus:2148121407 AT5G16880 "AT5G16880" [Arabido 0.377 0.626 0.333 5.7e-33
UNIPROTKB|E2RE93530 TOM1L2 "Uncharacterized protei 0.236 0.301 0.358 1.8e-30
UNIPROTKB|F1PP45509 TOM1L2 "Uncharacterized protei 0.229 0.304 0.363 3.7e-30
UNIPROTKB|Q6ZVM7507 TOM1L2 "TOM1-like protein 2" [ 0.236 0.315 0.352 7.5e-30
TAIR|locus:2077808 AT3G08790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 963 (344.1 bits), Expect = 3.3e-132, Sum P(2) = 3.3e-132
 Identities = 194/295 (65%), Positives = 224/295 (75%)

Query:     1 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALT 60
             MV+ +VDRATSDMLIGPDWAMN+EICDMLNH+PGQ ++VV GIKKR+ SR SKVQLLALT
Sbjct:     1 MVHPLVDRATSDMLIGPDWAMNLEICDMLNHEPGQTREVVSGIKKRLTSRTSKVQLLALT 60

Query:    61 LLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGXXXXX 120
             LLETII NCG+++HM VAEK++LH+MVK+A++KP+  VKEKILILIDTWQE+F G     
Sbjct:    61 LLETIITNCGELIHMQVAEKDILHKMVKMAKRKPNIQVKEKILILIDTWQESFSGPQGRH 120

Query:   121 XXXXXXXXELLRAGAVFPQRSERSAPVFTPP--QTHPLTSYPQNFRNPEHQQXXXXXXXX 178
                     ELLRAG VFPQR     P  TP   Q  P T YPQN RN   +Q        
Sbjct:   121 PQYYAAYQELLRAGIVFPQR-----PQITPSSGQNGPSTRYPQNSRNA--RQEAIDTSTE 173

Query:   179 XXFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVN 238
               FPTLSLTEIQNARGIMDVLAEM+NA+D NNKEGL+QEV+VDLV QCRTYKQRVVHLVN
Sbjct:   174 SEFPTLSLTEIQNARGIMDVLAEMMNAIDGNNKEGLKQEVVVDLVSQCRTYKQRVVHLVN 233

Query:   239 STADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDV 293
             ST+DES+LCQGL LNDDLQRLLAKHE+ ASG S    +    K   K +  ++DV
Sbjct:   234 STSDESMLCQGLALNDDLQRLLAKHEAIASGNSMIKKEEKSKKEVPKDTTQIIDV 288
GO:0005622 "intracellular" evidence=IEA
GO:0005795 "Golgi stack" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS
GO:0008565 "protein transporter activity" evidence=ISS
TAIR|locus:2027037 AT1G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025297 AT1G76970 "AT1G76970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057140 AT2G38410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180982 AT5G01760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160654 AT5G63640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148121 AT5G16880 "AT5G16880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE93 TOM1L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PP45 TOM1L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZVM7 TOM1L2 "TOM1-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query676
cd03561133 cd03561, VHS, VHS domain family; The VHS domain is 2e-59
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 1e-50
cd03569142 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs an 5e-32
pfam00790136 pfam00790, VHS, VHS domain 7e-32
cd03565141 cd03565, VHS_Tom1, VHS domain family, Tom1 subfami 1e-27
cd03568144 cd03568, VHS_STAM, VHS domain family, STAM subfami 1e-26
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 6e-26
pfam0312799 pfam03127, GAT, GAT domain 5e-21
cd03567139 cd03567, VHS_GGA, VHS domain family, GGA subfamily 9e-16
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 8e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-05
cd03562114 cd03562, CID, CID (CTD-Interacting Domain) domain 9e-05
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 7e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.002
>gnl|CDD|239620 cd03561, VHS, VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information 
 Score =  195 bits (498), Expect = 2e-59
 Identities = 64/133 (48%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 2   VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTL 61
           V S+++RATS  L  PDWA+N+E+CD++N  P   K+  + I+K+I   N  VQLLALTL
Sbjct: 1   VTSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTL 60

Query: 62  LETIIKNCGDIVHMHVAEKNVLHEMVKIA--RKKPDTHVKEKILILIDTWQEAFGGPRAR 119
           LE ++KNCG   H+ VA+K  L E+VKIA    K D  V+EK L LI  W E+FGG    
Sbjct: 61  LELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSED 120

Query: 120 YPQYYAAYQELLR 132
            P    AY+ L R
Sbjct: 121 LPGIEDAYKLLKR 133

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general membrane targeting/cargo recognition role in vesicular trafficking. Length = 133
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>gnl|CDD|239626 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>gnl|CDD|216121 pfam00790, VHS, VHS domain Back     alignment and domain information
>gnl|CDD|239623 cd03565, VHS_Tom1, VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>gnl|CDD|239625 cd03568, VHS_STAM, VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|190532 pfam03127, GAT, GAT domain Back     alignment and domain information
>gnl|CDD|239624 cd03567, VHS_GGA, VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|239621 cd03562, CID, CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 676
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 100.0
KOG1086594 consensus Cytosolic sorting protein/ADP-ribosylati 100.0
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 100.0
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 100.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 100.0
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 100.0
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 100.0
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 100.0
cd03561133 VHS VHS domain family; The VHS domain is present i 100.0
KOG2199462 consensus Signal transducing adaptor protein STAM/ 100.0
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.92
KOG1818634 consensus Membrane trafficking and cell signaling 99.87
PF03127100 GAT: GAT domain; InterPro: IPR004152 The GAT domai 99.81
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.19
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 98.14
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 97.87
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 97.7
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 97.65
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 97.26
KOG2374661 consensus Uncharacterized conserved protein [Funct 97.22
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.11
KOG0251491 consensus Clathrin assembly protein AP180 and rela 96.86
smart00582121 RPR domain present in proteins, which are involved 96.06
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.62
KOG2057499 consensus Predicted equilibrative nucleoside trans 92.06
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 91.16
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 90.52
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 89.64
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 88.19
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 86.89
smart00229127 RasGEFN Guanine nucleotide exchange factor for Ras 86.13
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 83.86
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 82.75
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.5e-68  Score=580.84  Aligned_cols=431  Identities=40%  Similarity=0.630  Sum_probs=322.8

Q ss_pred             ChHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810            1 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEK   80 (676)
Q Consensus         1 ~v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask   80 (676)
                      ||+.+|||||++.+.++||++||||||+||.+..+++||+|+|+|||++++++||++||+|||+||||||+.||.+|++|
T Consensus         1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k   80 (470)
T KOG1087|consen    1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK   80 (470)
T ss_pred             ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC-CCCCC-
Q 005810           81 NVLHEMVKIARKK-PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPPQ-THPLT-  157 (676)
Q Consensus        81 ~FLneLvKLvk~k-~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~e~~~piftPp~-t~p~S-  157 (676)
                      +||+||||+++++ .+..||+|||.||++|+++|++...+++.|+.+|++|+++||+||.+++++.++++|+. .++.. 
T Consensus        81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~  160 (470)
T KOG1087|consen   81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLRPAPE  160 (470)
T ss_pred             HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCCCCCC
Confidence            9999999999998 89999999999999999999997778999999999999999999999988877776653 11110 


Q ss_pred             ----CCCCCCCCchhhh-HHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHH
Q 005810          158 ----SYPQNFRNPEHQQ-EAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQR  232 (676)
Q Consensus       158 ----~~P~~lr~a~~~q-~~ae~s~~~E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~r  232 (676)
                          .+|.+...+.-.. .........++..++++||++++++++||+|||.+++|++++..++|++++|+++||.+|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~r  240 (470)
T KOG1087|consen  161 PQEQSGPPNEANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQRR  240 (470)
T ss_pred             chhhcCCccccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence                1111111110001 11112233456677789999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCChHHHHHHhhhhHHHHHHHHHHHhhhcCCcccccccCCCCCcCCCccccccCCCC----CCCCCCCCCCCC
Q 005810          233 VVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVDGP----LVDTGDATKQPD  308 (676)
Q Consensus       233 I~rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~l~~g~~~~~~~~~k~~~~~~~~~~LiD~~~~----~~~~~~~~~~~~  308 (676)
                      |++||+++.||++|++||++||+|++||++||++.+|..+..  +.+.    +.....+|.++.    .....+...++.
T Consensus       241 v~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g~s~~~--~~~~----e~~~~p~~~~~~~~~~~~s~~~~~~~~~  314 (470)
T KOG1087|consen  241 VMHLIEETSDEELLCELLKLNDELQRVLERYERIASGSSVAT--TSKS----ETASDPVDQSSSLLDKDDSSIDLNDSLA  314 (470)
T ss_pred             HHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhccccccc--cccc----ccCCCccccCccccccCcCccccccccc
Confidence            999999999999999999999999999999999999933211  1111    222244444433    223345556666


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccCCCCCCCCCCccccchhhhh
Q 005810          309 GRTTSNGGAGAQPLNQLLLPAPAAANGSSPPAAVNPKIDLLSGDDYSSPKEDTSLALVPVGVPQPNTPVSSQQNALVLFD  388 (676)
Q Consensus       309 ~~~~~~~~~~~~~~~~l~lp~pp~~~~~~~~~~~~~~~dlls~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  388 (676)
                      +|+|.+.        .   .+.+.+..+..  .....+|.|           ..++++++.++++.+|+++.++++.++|
T Consensus       315 ~~ss~~~--------~---~~~~~~~~~~~--~l~~d~~~l-----------~~~~~~~l~~~~p~~~~~~~~~~~~~~~  370 (470)
T KOG1087|consen  315 SRSSSTG--------I---SATPSSEQPSG--QLLGDLDKL-----------SDQTLLGLAPPPPNSPTASESSSISLLS  370 (470)
T ss_pred             cccccCC--------C---cCCCccccccc--chhhhhccc-----------cchhccccCCCCCCCCCCCccccccccc
Confidence            6665222        0   01111222211  112223333           1789999999999999989999999999


Q ss_pred             hhccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccccCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 005810          389 MFSDATNAPNSINTQPANMAGQPNSLAPQFHQQQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLALPQPT  468 (676)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (676)
                      +++.+....++..+.++..+           .+..+.|......+....++.+.+..++..+..+....|-... ..+..
T Consensus       371 ~~~~~~s~~s~~~~~~~~~~-----------~~~~~~P~~~~~~s~~~~p~~~~~~~~~p~~p~~~~~~~~~~~-~~~~s  438 (470)
T KOG1087|consen  371 LSSDNQSELSNSATNSPGSS-----------PQESFPPLPQIQKSSTSPPQSDSLMIEQPLTPASKSSPRSSSS-ASTGS  438 (470)
T ss_pred             ccccccccCCcccccCCCcc-----------ccccCCCCcccccccccCCCcccccccCCCCcccCCccccccc-ccCCC
Confidence            99988766665444443221           1122222111134556667777666777766666555666655 32455


Q ss_pred             CCCcc
Q 005810          469 SPAYG  473 (676)
Q Consensus       469 ~~~~~  473 (676)
                      +|.|.
T Consensus       439 ~p~~~  443 (470)
T KOG1087|consen  439 SPQYD  443 (470)
T ss_pred             Cccch
Confidence            55563

>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3 Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG2374 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query676
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 1e-19
1elk_A157 Vhs Domain Of Tom1 Protein From H. Sapiens Length = 2e-17
1x5b_A163 The Solution Structure Of The Vhs Domain Of Human S 4e-13
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 7e-13
3ldz_A140 Crystal Structure Of Human Stam1 Vhs Domain In Comp 3e-11
3rru_A152 X-Ray Crystal Structure Of The Vhs Domain Of Human 1e-08
1wrd_A103 Crystal Structure Of Tom1 Gat Domain In Complex Wit 3e-07
1jwf_A147 Crystal Structure Of Human Gga1 Vhs Domain. Length 9e-06
3g2s_A149 Vhs Domain Of Human Gga1 Complexed With Sorla C-Ter 9e-06
1py1_A158 Complex Of Gga1-Vhs Domain And Beta-Secretase C-Ter 1e-05
1lf8_A171 Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Ph 1e-05
1jpl_A171 Gga3 Vhs Domain Complexed With C-Terminal Peptide F 2e-05
1mhq_A148 Crystal Structure Of Human Gga2 Vhs Domain Length = 2e-05
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 68/109 (62%)
Query: 5   MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLET 64
           ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+
Sbjct: 12  LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMES 71
Query: 65  IIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113
           ++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct: 72  VVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens Length = 157 Back     alignment and structure
>pdb|1X5B|A Chain A, The Solution Structure Of The Vhs Domain Of Human Signal Transducing Adaptor Molecule 2 Length = 163 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|3LDZ|A Chain A, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 140 Back     alignment and structure
>pdb|3RRU|A Chain A, X-Ray Crystal Structure Of The Vhs Domain Of Human Tom1-Like Protein, Northeast Structural Genomics Consortium Target Hr3050e Length = 152 Back     alignment and structure
>pdb|1WRD|A Chain A, Crystal Structure Of Tom1 Gat Domain In Complex With Ubiquitin Length = 103 Back     alignment and structure
>pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain. Length = 147 Back     alignment and structure
>pdb|3G2S|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal Peptide Length = 149 Back     alignment and structure
>pdb|1PY1|A Chain A, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal Phosphopeptide Length = 158 Back     alignment and structure
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Phosphopeptide Length = 171 Back     alignment and structure
>pdb|1JPL|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From Cation-Independent Mannose 6-Phosphate Receptor Length = 171 Back     alignment and structure
>pdb|1MHQ|A Chain A, Crystal Structure Of Human Gga2 Vhs Domain Length = 148 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query676
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 7e-49
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 8e-49
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 2e-48
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 1e-47
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 6e-47
3g2s_A149 C-terminal fragment of sortilin-related receptor; 2e-46
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 6e-46
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 5e-45
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 4e-41
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 2e-30
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 1e-24
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 6e-23
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 7e-22
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 3e-21
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 8e-04
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
 Score =  166 bits (423), Expect = 7e-49
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 4   SMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLE 63
             +++AT   +   DW+     C+ +N DP         +  +I S   K  L ALT+LE
Sbjct: 4   LWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLE 63

Query: 64  TIIKNCGDIVHMHVAEKNVLHEMVKIARKKP-----DTHVKEKILILIDTWQEAFGGPRA 118
             + +CG+  H  VA+   L+E++K+   K         VK +++ ++ +W   F     
Sbjct: 64  MCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE--- 120

Query: 119 RYPQYYAAYQELLRAGAVFP 138
              +   AYQ L + G +  
Sbjct: 121 -DIKIRDAYQMLKKQGIIKQ 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Length = 144 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query676
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 100.0
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 100.0
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 100.0
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 100.0
3g2s_A149 C-terminal fragment of sortilin-related receptor; 100.0
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 100.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 100.0
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 100.0
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 100.0
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 99.89
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 99.85
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 99.85
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 99.84
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 99.81
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.17
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 98.01
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 97.75
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 97.61
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 97.43
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 97.27
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 96.72
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 96.66
2pjw_V91 Vacuolar protein sorting-associated protein 27; GA 96.18
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 96.09
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 95.22
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.81
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 94.05
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 93.7
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 93.64
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 93.32
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 93.02
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 92.64
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 91.59
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 89.87
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 88.49
3clj_A157 Protein NRD1; CTD-interacting domain, nucleus, pho 87.27
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 86.79
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 86.19
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 84.7
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 83.22
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 81.13
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-41  Score=330.42  Aligned_cols=149  Identities=29%  Similarity=0.451  Sum_probs=133.7

Q ss_pred             hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810            2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN   81 (676)
Q Consensus         2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~   81 (676)
                      ++++|||||++.+.++||++|++|||+||+++++++||+|+|+|||+|+|+++|++||+|||+||||||++||.+|++++
T Consensus        14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~   93 (171)
T 1juq_A           14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR   93 (171)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCC--CCCCCCCCCCCCCCCCC
Q 005810           82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVF--PQRSERSAPVFTPPQTH  154 (676)
Q Consensus        82 FLneLvKLvk~k-----~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~F--P~~~e~~~piftPp~t~  154 (676)
                      ||++|+++++++     ++..||+|||++|+.|+++|++    ++.|.++|++||++||.|  |..+ .++++|+||.++
T Consensus        94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~~~i~~~y~~Lk~~G~~f~~P~~~-~~~~~f~~p~~~  168 (171)
T 1juq_A           94 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE----EAKIKDAYHMLKRQGIVQSDPPIP-VDRTLIPSPPPR  168 (171)
T ss_dssp             HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSCSSCCCBC-CCTTCC------
T ss_pred             HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHCCCCCCCCCCC-ccccCCCCCCCC
Confidence            999999999754     5789999999999999999985    478999999999999998  7665 346799987655


Q ss_pred             C
Q 005810          155 P  155 (676)
Q Consensus       155 p  155 (676)
                      +
T Consensus       169 ~  169 (171)
T 1juq_A          169 P  169 (171)
T ss_dssp             -
T ss_pred             C
Confidence            4
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 676
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 5e-53
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 5e-50
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 1e-49
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 2e-49
d1ujka_145 a.118.9.2 (A:) ADP-ribosylation factor binding pro 2e-47
d1wrda193 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 1e-25
d1wr6a190 a.7.8.1 (A:211-300) ADP-ribosylation factor bindin 8e-23
d1o3xa_112 a.7.8.1 (A:) ADP-ribosylation factor binding prote 8e-20
d1szaa_144 a.118.9.4 (A:) PCF11 protein {Baker's yeast (Sacch 2e-16
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 7e-12
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 3e-05
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  176 bits (449), Expect = 5e-53
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 2   VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTL 61
               ++ ATS + + PDW   + ICD +N      K+    IKK++ S N      +L +
Sbjct: 6   FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLV 65

Query: 62  LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYP 121
           LE+I+KNCG  VH  V  K             P  +V++K+L L+ TW  AF     +Y 
Sbjct: 66  LESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS-SDKYQ 124

Query: 122 QYYAAYQELLRAGAVFPQRSE 142
                   L   G  FP+  E
Sbjct: 125 AIKDTMTILKAKGHTFPELRE 145
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 144 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query676
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 100.0
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 100.0
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 100.0
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 100.0
d1wrda193 Target of Myb protein 1, TOM1 {Human (Homo sapiens 99.86
d1wr6a190 ADP-ribosylation factor binding protein Gga3 {Huma 99.84
d1o3xa_112 ADP-ribosylation factor binding protein Gga1 {Huma 99.81
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 98.84
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 97.7
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 97.66
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.62
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 86.29
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 84.33
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 83.23
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 81.0
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.3e-40  Score=312.77  Aligned_cols=139  Identities=30%  Similarity=0.515  Sum_probs=134.3

Q ss_pred             hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810            2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN   81 (676)
Q Consensus         2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~   81 (676)
                      ++.+|||||++.+.++||++|++|||+||+++.++++|+|+|+|||+|+|+++|++||+|||+||+|||..||.+|++++
T Consensus         6 ~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~   85 (145)
T d1dvpa1           6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE   85 (145)
T ss_dssp             HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred             HHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCC
Q 005810           82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRS  141 (676)
Q Consensus        82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~  141 (676)
                      |+++|++++++.++..||+||+++|+.|+++|++++ +|+.+.++|++||++||.||..+
T Consensus        86 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~Lk~~G~~FP~l~  144 (145)
T d1dvpa1          86 NCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD-KYQAIKDTMTILKAKGHTFPELR  144 (145)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS-SCCHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cchHHHHHHHHHHHCCCCCcCCC
Confidence            999999999988899999999999999999999764 69999999999999999999765
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure