Citrus Sinensis ID: 005843

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670----
MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLASIKENNKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTVTIPPTTSSWDITLCY
cccccccccccccccEEEEEEEccccccccccccccccEEEEEEEEcccEEEEEEccccccEEEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHcccccEEccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEEEcccEEEEEEEEEEEEcccEEEEEEEccccccccccEEEEEEEcccccEEEEEEEEccEEEEEEEcccccEEEEccEEEEEEEEccccEEEEEcccccccccEEEEc
cccccccccccccccHEEEEEEcccccccccccccccEEEEEEEEEcccEEEEEEcccccEEEEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccHHcccccHHHHccccccHHHHHccccHHHHHHHHHHHHHcccccEEEEEEccccEcccccccccHcccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccEEEEEHHHHcccccccccccHHccccccEEEcccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEHcccccHHHccccccEEEEccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHccccccEEEcccccccccHHccccccccccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccEcEEEcccccccccccccccccccEEEEEEcccEEEEccccccEEEEEccccEEEEEEEEEEEcccccEEEEEEEHcccccccEEEEEEEcccccEEEEEEEEEEcEEEEEEEcccccEEEEccEEEEEEEcccccEEEEEEccccccccEEEEc
miprmgnsasdipIETQMLLLEAsekekgptsddastsyilflpvldgefrsslqgnssnELEFCIesgnpdivtsESLRAVFVnfgdnpfdLVKESMKILETHLgtfsiretkqlpgmldwfgwctwdAFYQEVNPQGIKDGlkslseggtpakfliiddgwqdttnefqiegepfaegtqfggrlasikennkfrgttgddqketsglKDFVLDIKKNFCLKYVYVWHALMGYWGGlvlnssgtkmynpemkypvqspgnlanmrdlSIDCMEmekygigaidpdkisqFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESiatnfkdnsiiccmaqntdsifHSKRSAitrasddyypknpttqtLHIAAVAFNSIflgevvvpdwdmfysQHCAAEFHAVARAVggcgvyvsdkpgkhdfKILKRLVLADgsvlrakypgrpsrdclfndpvmdgksLLKIWNLNKCTgvigvfncqgagswpctekessvqENVDSvisgkvspadVEYLEEvsgkqwtgdcavfsfntgslFRLAKAESFGIALKVMqcdvftvspikvyNQKIqfapigltnmynsggavesvdltndassckihikgrgggsfgaysstkpssillnskneefkfsaednlltvtippttsswditlcy
miprmgnsasdipiETQMLLLEASEKekgptsddastSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLASIKennkfrgttgddqketsgLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEmkypvqspgnlANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSvlrakypgrpsrdclfndpVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEvsgkqwtgdCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKgrgggsfgaysSTKPSSILLNSKNEEFKFsaednlltvtippttsswditlcy
MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLASIKENNKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTVTIPPTTSSWDITLCY
*************************************SYILFLPVLDGEFR*********ELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQF**************************LKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYN***********NLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCT************VISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGG************************FSAEDNLLTVTIPPTTSSWDITLC*
MIPR***SASDIPIETQMLLLEASEK*******DASTSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILET**************GMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLAS*******************GLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSS***MY***MKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVIS*KVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTVTIPPTTSSWDITLCY
********ASDIPIETQMLLLEA***********ASTSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLASIKENNKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGS**************DSVISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTVTIPPTTSSWDITLCY
**********DIPIETQMLLLEASE********DASTSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLASIKENNKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTVTIPPTTSSWDITLCY
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MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLASIKENNKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTVTIPPTTSSWDITLCY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query674 2.2.26 [Sep-21-2011]
Q94A08773 Probable galactinol--sucr yes no 0.974 0.849 0.500 0.0
Q84VX0754 Probable galactinol--sucr no no 0.988 0.883 0.488 0.0
Q8RX87749 Probable galactinol--sucr no no 0.952 0.857 0.475 1e-178
Q9FND9783 Probable galactinol--sucr no no 0.958 0.825 0.392 1e-133
Q5VQG4783 Galactinol--sucrose galac no no 0.952 0.819 0.378 1e-132
Q8VWN6798 Galactinol--sucrose galac N/A no 0.945 0.798 0.378 1e-130
Q9SYJ4876 Probable galactinol--sucr no no 0.675 0.519 0.368 2e-79
Q93XK2853 Stachyose synthase OS=Pis N/A no 0.675 0.533 0.368 1e-78
Q97U94648 Alpha-galactosidase OS=Su yes no 0.545 0.567 0.284 2e-39
>sp|Q94A08|RFS2_ARATH Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2 Back     alignment and function desciption
 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/689 (50%), Positives = 472/689 (68%), Gaps = 32/689 (4%)

Query: 1   MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSN 60
           M  RMG+   DIP+ETQ +LLE+ ++ +G   DDA T Y +FLP+L+G+FR+ LQGN  N
Sbjct: 79  MTQRMGSCGKDIPLETQFMLLESKDEVEG-NGDDAPTVYTVFLPLLEGQFRAVLQGNEKN 137

Query: 61  ELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGML 120
           E+E C ESG+  + TS+    V+V+ G NPF+++++S+K +E H+ TF  RE K+LP  L
Sbjct: 138 EIEICFESGDKAVETSQGTHLVYVHAGTNPFEVIRQSVKAVERHMQTFHHREKKKLPSFL 197

Query: 121 DWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEG 180
           DWFGWCTWDAFY +V  +G+ +GLKSLSEGGTP KFLIIDDGWQ   N+ + E     EG
Sbjct: 198 DWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIIDDGWQQIENKEKDENCVVQEG 257

Query: 181 TQFGGRLASIKENNKFRGTTGDDQKET--SGLKDFVLDIKKNFCLKYVYVWHALMGYWGG 238
            QF  RL  IKEN KF+ +   DQK+T  SGLK  V + K+   +K VY WHAL GYWGG
Sbjct: 258 AQFATRLVGIKENAKFQKS---DQKDTQVSGLKSVVDNAKQRHNVKQVYAWHALAGYWGG 314

Query: 239 LVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHK 298
           +   +SG + Y+  + YPVQSPG L N  D+ +D + +  +G+G ++P K+  FY++LH 
Sbjct: 315 VKPAASGMEHYDSALAYPVQSPGVLGNQPDIVMDSLAV--HGLGLVNPKKVFNFYNELHS 372

Query: 299 YLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNT 358
           YL S G+DGVKVDVQNI+ET+ +GLG RVSLTR +QQALE SIA NF DN  I CM  NT
Sbjct: 373 YLASCGIDGVKVDVQNIIETLGAGLGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNT 432

Query: 359 DSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEF 418
           D ++ +K++AI RASDD+YP++P + T+HIA+VA+NS+FLGE + PDWDMF+S H  AE+
Sbjct: 433 DGLYSAKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEFMQPDWDMFHSLHPTAEY 492

Query: 419 HAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKS 478
           HA ARAVGGC +YVSDKPG H+F +L++LVL DGSVLRAK PGRP+RDCLF DP  DG S
Sbjct: 493 HAAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGIS 552

Query: 479 LLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGK 538
           LLKIWN+NK TG++GVFNCQGAG W    K++ + +     ++G +   D + + +V+G+
Sbjct: 553 LLKIWNMNKFTGIVGVFNCQGAG-WCKETKKNQIHDTSPGTLTGSIRADDADLISQVAGE 611

Query: 539 QWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMY 598
            W+GD  V+++ +G + RL K  S  + LKV++ ++F +SP+K   + I FAPIGL +M+
Sbjct: 612 DWSGDSIVYAYRSGEVVRLPKGASIPLTLKVLEYELFHISPLKEITENISFAPIGLVDMF 671

Query: 599 NSGGAVESVDLT-----------------------NDASSCKIHIKGRGGGSFGAYSSTK 635
           NS GA+ES+D+                        N + +  + +  RG G FGAYSS +
Sbjct: 672 NSSGAIESIDINHVTDKNPEFFDGEISSASPALSDNRSPTALVSVSVRGCGRFGAYSSQR 731

Query: 636 PSSILLNSKNEEFKFSAEDNLLTVTIPPT 664
           P    + S   +F + AE  L+T+ +P T
Sbjct: 732 PLKCAVESTETDFTYDAEVGLVTLNLPVT 760
Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 8EC: 2
>sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RX87|RFS6_ARATH Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2 Back     alignment and function description
>sp|Q9FND9|RFS5_ARATH Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1 Back     alignment and function description
>sp|Q5VQG4|RFS_ORYSJ Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1 Back     alignment and function description
>sp|Q8VWN6|RFS_PEA Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1 Back     alignment and function description
>sp|Q9SYJ4|RFS4_ARATH Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=3 Back     alignment and function description
>sp|Q93XK2|STSYN_PEA Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1 Back     alignment and function description
>sp|Q97U94|AGAL_SULSO Alpha-galactosidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=galS PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query674
296085757739 unnamed protein product [Vitis vinifera] 0.985 0.898 0.743 0.0
359497361 789 PREDICTED: probable galactinol--sucrose 0.985 0.841 0.743 0.0
356532882742 PREDICTED: probable galactinol--sucrose 0.988 0.897 0.744 0.0
224124746743 predicted protein [Populus trichocarpa] 0.983 0.892 0.75 0.0
255568500 793 Stachyose synthase precursor, putative [ 0.982 0.834 0.727 0.0
224133736752 predicted protein [Populus trichocarpa] 0.992 0.889 0.603 0.0
356507309749 PREDICTED: probable galactinol--sucrose 0.989 0.890 0.592 0.0
225456842750 PREDICTED: probable galactinol--sucrose 0.994 0.893 0.585 0.0
147838354 1122 hypothetical protein VITISV_039575 [Viti 0.977 0.587 0.590 0.0
449440614749 PREDICTED: probable galactinol--sucrose 0.989 0.890 0.563 0.0
>gi|296085757|emb|CBI29568.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/675 (74%), Positives = 566/675 (83%), Gaps = 11/675 (1%)

Query: 1   MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSN 60
           MIPRMGNS  DIPIETQMLLLEA E+  GP S      YILFLPVLDG+FRSSLQGN SN
Sbjct: 75  MIPRMGNSGQDIPIETQMLLLEAKEEPDGPAS------YILFLPVLDGDFRSSLQGNQSN 128

Query: 61  ELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGML 120
           ELE C+ESG+P IVTS SL+AVFVN GDNPFDL+ +SMK LE HLGTFS RETKQ+PGML
Sbjct: 129 ELELCVESGDPAIVTSRSLKAVFVNCGDNPFDLMNQSMKTLEKHLGTFSHRETKQMPGML 188

Query: 121 DWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEG 180
           DWFGWCTWDAFY  VNPQGI+DGLKSLSEGGTPAKFLIIDDGWQDTTNEFQ EGEPF EG
Sbjct: 189 DWFGWCTWDAFYHGVNPQGIRDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQKEGEPFIEG 248

Query: 181 TQFGGRLASIKENNKFRGTTGDDQKET-SGLKDFVLDIKKNFCLKYVYVWHALMGYWGGL 239
           +QFG RL SIKENNKFR T  +D  E  SGLKDFV DIK  F LKYVYVWHAL+GYWGG 
Sbjct: 249 SQFGARLVSIKENNKFRETANEDLNEAPSGLKDFVSDIKSTFGLKYVYVWHALLGYWGGF 308

Query: 240 VLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKY 299
             ++   + YNP++K+P+QSPGNLANMRD+S+DCME  KYGIGAIDP K S+FYDDLH Y
Sbjct: 309 HPDAPEGRKYNPKLKFPIQSPGNLANMRDISMDCME--KYGIGAIDPAKASEFYDDLHSY 366

Query: 300 LVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTD 359
           LVSQ VDGVKVDVQNILET+ +GLG RVSLTR FQQALE+SIA NF+DNSIICCM  +TD
Sbjct: 367 LVSQDVDGVKVDVQNILETLATGLGGRVSLTRKFQQALEKSIAANFQDNSIICCMGLSTD 426

Query: 360 SIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFH 419
           ++++++RSAITRASDDYYPK PTTQ+LHIAAVAFNSIFLGEVVVPDWDMFYS H AAEFH
Sbjct: 427 TLYNARRSAITRASDDYYPKIPTTQSLHIAAVAFNSIFLGEVVVPDWDMFYSLHSAAEFH 486

Query: 420 AVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSL 479
           AVARAVGGCGVYVSDKPG+HDF+IL+RLVL DGSVLRAKYPGRPSRDCLFNDPVMDG+SL
Sbjct: 487 AVARAVGGCGVYVSDKPGQHDFEILRRLVLPDGSVLRAKYPGRPSRDCLFNDPVMDGESL 546

Query: 480 LKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGKQ 539
           LKIWNLNK TGVIGVFNCQGAGSWPC   ++ VQ++V   +SG+VSPAD+EY EEV+   
Sbjct: 547 LKIWNLNKVTGVIGVFNCQGAGSWPCL--DNPVQKDVSPKLSGQVSPADIEYFEEVAPTP 604

Query: 540 WTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYN 599
           WTGDCAVFSF  GSL RL K  SF + LK+++CDVFTVSPIKVY+ K+ FA IGL +MYN
Sbjct: 605 WTGDCAVFSFKAGSLSRLPKRGSFDVKLKILECDVFTVSPIKVYHGKVHFAAIGLIDMYN 664

Query: 600 SGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTV 659
           SGGAVE+V+  N + +  I IKGRG G FGAY++ KP    +NSK E F F  EDNLLT+
Sbjct: 665 SGGAVETVEALNASDNGGISIKGRGAGRFGAYTNEKPKLCSVNSKEEAFTFRDEDNLLTI 724

Query: 660 TIPPTTSSWDITLCY 674
           TIP  T+ W+I + Y
Sbjct: 725 TIPSGTNFWEIVVSY 739

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359497361|ref|XP_002269491.2| PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532882|ref|XP_003534998.1| PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224124746|ref|XP_002329938.1| predicted protein [Populus trichocarpa] gi|222871960|gb|EEF09091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255568500|ref|XP_002525224.1| Stachyose synthase precursor, putative [Ricinus communis] gi|223535521|gb|EEF37190.1| Stachyose synthase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224133736|ref|XP_002321648.1| predicted protein [Populus trichocarpa] gi|222868644|gb|EEF05775.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507309|ref|XP_003522410.1| PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225456842|ref|XP_002278889.1| PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Vitis vinifera] gi|297733664|emb|CBI14911.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440614|ref|XP_004138079.1| PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query674
TAIR|locus:2103488773 SIP2 "AT3G57520" [Arabidopsis 0.894 0.780 0.534 1.9e-192
TAIR|locus:2020452754 SIP1 "AT1G55740" [Arabidopsis 0.986 0.881 0.489 1e-178
TAIR|locus:2170528783 SIP1 "AT5G40390" [Arabidopsis 0.955 0.822 0.397 1.2e-129
UNIPROTKB|Q5VQG4783 RFS "Galactinol--sucrose galac 0.952 0.819 0.380 1.1e-121
TAIR|locus:2141425876 STS "AT4G01970" [Arabidopsis t 0.685 0.527 0.367 7.9e-112
UNIPROTKB|Q93XK2853 STS1 "Stachyose synthase" [Pis 0.675 0.533 0.370 9e-111
UNIPROTKB|Q97U94648 galS "Alpha-galactosidase" [Su 0.272 0.283 0.338 7.4e-34
UNIPROTKB|G4NBB7908 MGG_11554 "Seed imbibition pro 0.409 0.303 0.317 2.2e-32
ASPGD|ASPL0000010056863 aglF [Emericella nidulans (tax 0.397 0.310 0.294 8.3e-31
UNIPROTKB|Q8A170693 BT_3797 "Possible alpha-galact 0.281 0.274 0.279 2.1e-22
TAIR|locus:2103488 SIP2 "AT3G57520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1792 (635.9 bits), Expect = 1.9e-192, Sum P(2) = 1.9e-192
 Identities = 328/614 (53%), Positives = 445/614 (72%)

Query:     1 MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSN 60
             M  RMG+   DIP+ETQ +LLE+ ++ +G   DDA T Y +FLP+L+G+FR+ LQGN  N
Sbjct:    79 MTQRMGSCGKDIPLETQFMLLESKDEVEG-NGDDAPTVYTVFLPLLEGQFRAVLQGNEKN 137

Query:    61 ELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGML 120
             E+E C ESG+  + TS+    V+V+ G NPF+++++S+K +E H+ TF  RE K+LP  L
Sbjct:   138 EIEICFESGDKAVETSQGTHLVYVHAGTNPFEVIRQSVKAVERHMQTFHHREKKKLPSFL 197

Query:   121 DWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEG 180
             DWFGWCTWDAFY +V  +G+ +GLKSLSEGGTP KFLIIDDGWQ   N+ + E     EG
Sbjct:   198 DWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIIDDGWQQIENKEKDENCVVQEG 257

Query:   181 TQFGGRLASIKENNKFRGTTGDDQKET--SGLKDFVLDIKKNFCLKYVYVWHALMGYWGG 238
              QF  RL  IKEN KF+ +   DQK+T  SGLK  V + K+   +K VY WHAL GYWGG
Sbjct:   258 AQFATRLVGIKENAKFQKS---DQKDTQVSGLKSVVDNAKQRHNVKQVYAWHALAGYWGG 314

Query:   239 LVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHK 298
             +   +SG + Y+  + YPVQSPG L N  D+ +D + +  +G+G ++P K+  FY++LH 
Sbjct:   315 VKPAASGMEHYDSALAYPVQSPGVLGNQPDIVMDSLAV--HGLGLVNPKKVFNFYNELHS 372

Query:   299 YLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNT 358
             YL S G+DGVKVDVQNI+ET+ +GLG RVSLTR +QQALE SIA NF DN  I CM  NT
Sbjct:   373 YLASCGIDGVKVDVQNIIETLGAGLGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNT 432

Query:   359 DSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEF 418
             D ++ +K++AI RASDD+YP++P + T+HIA+VA+NS+FLGE + PDWDMF+S H  AE+
Sbjct:   433 DGLYSAKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEFMQPDWDMFHSLHPTAEY 492

Query:   419 HAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKS 478
             HA ARAVGGC +YVSDKPG H+F +L++LVL DGSVLRAK PGRP+RDCLF DP  DG S
Sbjct:   493 HAAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGIS 552

Query:   479 LLKIWNLNKCTGVIGVFNCQGAGSWPCTE-KESSVQENVDSVISGKVSPADVEYLEEVSG 537
             LLKIWN+NK TG++GVFNCQGAG W C E K++ + +     ++G +   D + + +V+G
Sbjct:   553 LLKIWNMNKFTGIVGVFNCQGAG-W-CKETKKNQIHDTSPGTLTGSIRADDADLISQVAG 610

Query:   538 KQWTGDCAVFSFNTGSLFRLAKAESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNM 597
             + W+GD  V+++ +G + RL K  S  + LKV++ ++F +SP+K   + I FAPIGL +M
Sbjct:   611 EDWSGDSIVYAYRSGEVVRLPKGASIPLTLKVLEYELFHISPLKEITENISFAPIGLVDM 670

Query:   598 YNSGGAVESVDLTN 611
             +NS GA+ES+D+ +
Sbjct:   671 FNSSGAIESIDINH 684
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0080167 "response to karrikin" evidence=IEP
GO:0034484 "raffinose catabolic process" evidence=IDA
GO:0047274 "galactinol-sucrose galactosyltransferase activity" evidence=IDA
GO:0052692 "raffinose alpha-galactosidase activity" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2020452 SIP1 "AT1G55740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170528 SIP1 "AT5G40390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VQG4 RFS "Galactinol--sucrose galactosyltransferase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2141425 STS "AT4G01970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q93XK2 STS1 "Stachyose synthase" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
UNIPROTKB|Q97U94 galS "Alpha-galactosidase" [Sulfolobus solfataricus P2 (taxid:273057)] Back     alignment and assigned GO terms
UNIPROTKB|G4NBB7 MGG_11554 "Seed imbibition protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000010056 aglF [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q8A170 BT_3797 "Possible alpha-galactosidase" [Bacteroides thetaiotaomicron VPI-5482 (taxid:226186)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94A08RFS2_ARATH2, ., 4, ., 1, ., 8, 20.50070.97470.8499yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query674
pfam05691742 pfam05691, Raffinose_syn, Raffinose synthase or se 0.0
PLN02219775 PLN02219, PLN02219, probable galactinol--sucrose g 0.0
PLN02355758 PLN02355, PLN02355, probable galactinol--sucrose g 0.0
PLN02684750 PLN02684, PLN02684, Probable galactinol--sucrose g 0.0
PLN02711777 PLN02711, PLN02711, Probable galactinol--sucrose g 0.0
PLN02982865 PLN02982, PLN02982, galactinol-raffinose galactosy 1e-117
PLN02982865 PLN02982, PLN02982, galactinol-raffinose galactosy 2e-45
COG3345687 COG3345, GalA, Alpha-galactosidase [Carbohydrate t 8e-04
>gnl|CDD|218695 pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1 Back     alignment and domain information 
 Score =  785 bits (2029), Expect = 0.0
 Identities = 306/681 (44%), Positives = 421/681 (61%), Gaps = 39/681 (5%)

Query: 1   MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSN 60
           M   +G S SD+ +ETQ +LLE+ E +          SY++FLP+L+G FRSSLQ    +
Sbjct: 81  MTQWVGTSGSDLQLETQFILLESPETK----------SYVVFLPLLEGSFRSSLQPGEDD 130

Query: 61  ELEFCIESGNPDIVTSESLRAVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGML 120
           E+E C ESG+  + TS     V+V+ G NPF L+KE++K +  HL TF + E K LP ++
Sbjct: 131 EVEICAESGSTAVKTSSFTSIVYVHAGTNPFQLIKEAVKAVRVHLNTFKLLEEKTLPSIV 190

Query: 121 DWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIIDDGWQ----DTTNEFQIEGEP 176
           D FGWCTWDAFY  V P+G+ +GLKSLS+GGTP +F+IIDDGWQ    D  +        
Sbjct: 191 DKFGWCTWDAFYLTVTPEGVWEGLKSLSDGGTPPRFVIIDDGWQSIGHDGDDPNDDAMNL 250

Query: 177 FAEGTQFGGRLASIKENNKFR--GTTGDDQKETSGLKDFVLDIKKNFC-LKYVYVWHALM 233
             EG Q   RL   KEN KFR            SG+K FV D+K  F  +  VYVWHAL 
Sbjct: 251 VLEGEQMAARLTGFKENYKFRKYDGGSLLSDSNSGMKAFVDDLKTEFKGVDDVYVWHALC 310

Query: 234 GYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFY 293
           GYWGG+     G + Y+ ++ YPV SPG +  M DL++D  ++ ++G+G + P K  +FY
Sbjct: 311 GYWGGV--RPEGMEHYDSKIAYPVLSPGLVGTMPDLAVD--KIVEHGLGLVHPKKAHEFY 366

Query: 294 DDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFKDNSIICC 353
           D+LH YL S G+DGVKVDV +ILET+  G G RV L + + +AL  SIA NF  N  I  
Sbjct: 367 DELHSYLASAGIDGVKVDVIHILETLGEGYGGRVELAKAYYKALTSSIAKNFNGNGCIAS 426

Query: 354 MAQNTDSIF-HSKRSAITRASDDYYPKNPT--------TQTLHIAAVAFNSIFLGEVVVP 404
           M    D  F  +K+ ++ R  DD++P++P          Q +H+   A+NS+++GE + P
Sbjct: 427 MQHCNDFFFLGTKQISVGRVGDDFWPRDPAGDPNGVFWLQGVHMIHCAYNSLWMGEFIQP 486

Query: 405 DWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPS 464
           DWDMF S H  AEFHA +RA+ G  +YVSD  GKH+F +LK+LVL DGS+LR + P  P+
Sbjct: 487 DWDMFQSDHPCAEFHAASRAISGGPIYVSDSVGKHNFDLLKKLVLPDGSILRCRLPALPT 546

Query: 465 RDCLFNDPVMDGKSLLKIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKV 524
           RDCLF DP+ DGK+LLKIWN+NK TGVIG FNCQGAG  P T K     E   ++ +G V
Sbjct: 547 RDCLFKDPLRDGKTLLKIWNMNKYTGVIGAFNCQGAGWCPETRKNKGHSECYKTL-TGSV 605

Query: 525 SPADVEYLEEVSGKQ--WTGDCAVFSFNTGSLFRL-AKAESFGIALKVMQCDVFTVSPIK 581
              DVE++    G    W G+ AV+ + +G L  +  K+ S  + LK ++ ++FTVSP+K
Sbjct: 606 RVEDVEWISGAEGTSIDWVGEYAVYLYQSGELLLMPPKSASLPVTLKPLEFELFTVSPVK 665

Query: 582 VYNQK-IQFAPIGLTNMYNSGGAVESVDLTNDASSCKIHIKGRGGGSFGAYSSTKPSSIL 640
                 + FAPIGL NM+NSGGA++ ++  ++AS   + I  +G G FGAYSS KP    
Sbjct: 666 KLVSSGVSFAPIGLVNMFNSGGAIQDLEYDDNAS---VKIGVKGCGRFGAYSSQKPKKCY 722

Query: 641 LNSKNEEFKFSAEDNLLTVTI 661
           ++ +  EFK+   D L+TV +
Sbjct: 723 VDGEEVEFKYD-SDGLVTVQV 742

This family consists of several raffinose synthase proteins, also known as seed inhibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1<-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (EC:2.4.1.82) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway. Raffinose family oligosaccharides (RFOs) are ubiquitous in plant seeds and are thought to play critical roles in the acquisition of tolerance to desiccation and seed longevity. Raffinose synthases are alkaline alpha-galactosidases and are solely responsible for RFO breakdown in germinating maize seeds, whereas acidic galactosidases appear to have other functions. Length = 742
>gnl|CDD|165863 PLN02219, PLN02219, probable galactinol--sucrose galactosyltransferase 2 Back     alignment and domain information
>gnl|CDD|215203 PLN02355, PLN02355, probable galactinol--sucrose galactosyltransferase 1 Back     alignment and domain information
>gnl|CDD|166325 PLN02684, PLN02684, Probable galactinol--sucrose galactosyltransferase Back     alignment and domain information
>gnl|CDD|215381 PLN02711, PLN02711, Probable galactinol--sucrose galactosyltransferase Back     alignment and domain information
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
>gnl|CDD|225882 COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 674
PLN02219775 probable galactinol--sucrose galactosyltransferase 100.0
PLN02684750 Probable galactinol--sucrose galactosyltransferase 100.0
PLN02355758 probable galactinol--sucrose galactosyltransferase 100.0
PLN02982865 galactinol-raffinose galactosyltransferase/ghydrol 100.0
PLN02711777 Probable galactinol--sucrose galactosyltransferase 100.0
PF05691747 Raffinose_syn: Raffinose synthase or seed imbibiti 100.0
PLN02229427 alpha-galactosidase 100.0
PLN02692412 alpha-galactosidase 100.0
PLN02808386 alpha-galactosidase 100.0
PLN03231357 putative alpha-galactosidase; Provisional 100.0
PLN02899633 alpha-galactosidase 100.0
PF02065394 Melibiase: Melibiase; InterPro: IPR000111 O-Glycos 99.97
COG3345687 GalA Alpha-galactosidase [Carbohydrate transport a 99.97
KOG2366414 consensus Alpha-D-galactosidase (melibiase) [Carbo 99.96
cd06592303 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact 99.48
cd06593308 GH31_xylosidase_YicI YicI alpha-xylosidase is a gl 99.33
PRK10658665 putative alpha-glucosidase; Provisional 99.14
PRK10426635 alpha-glucosidase; Provisional 98.99
cd06598317 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide 98.9
cd06595292 GH31_xylosidase_XylS-like This family represents a 98.87
PF01055441 Glyco_hydro_31: Glycosyl hydrolases family 31 ; In 98.85
cd06591319 GH31_xylosidase_XylS XylS is a glycosyl hydrolase 98.84
cd06599317 GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 98.72
cd06594317 GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl 98.71
cd06597340 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide 98.59
cd06604339 GH31_glucosidase_II_MalA Alpha-glucosidase II (alp 98.59
cd06589265 GH31 The enzymes of glycosyl hydrolase family 31 ( 98.53
cd06602339 GH31_MGAM_SI_GAA This family includes the followin 98.5
COG1501772 Alpha-glucosidases, family 31 of glycosyl hydrolas 98.45
cd06600317 GH31_MGAM-like This family includes the following 98.43
PLN02763 978 hydrolase, hydrolyzing O-glycosyl compounds 98.37
cd06601332 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) 98.29
cd06603339 GH31_GANC_GANAB_alpha This family includes the clo 98.2
PF10566273 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: 98.03
KOG1065805 consensus Maltase glucoamylase and related hydrola 97.51
TIGR01515613 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 92.14
cd06596261 GH31_CPE1046 CPE1046 is an uncharacterized Clostri 88.1
PF13200316 DUF4015: Putative glycosyl hydrolase domain 86.55
>PLN02219 probable galactinol--sucrose galactosyltransferase 2 Back     alignment and domain information 
Probab=100.00  E-value=5.7e-183  Score=1520.38  Aligned_cols=670  Identities=51%  Similarity=0.968  Sum_probs=638.7

Q ss_pred             CCCcccCCCCCCCcceeeeeEeecCCCCCCCCCCCCceEEEEEEeecCceEEEEecCCCCeEEEEEecCCCccccccCce
Q 005843            1 MIPRMGNSASDIPIETQMLLLEASEKEKGPTSDDASTSYILFLPVLDGEFRSSLQGNSSNELEFCIESGNPDIVTSESLR   80 (674)
Q Consensus         1 ~~~~~g~~~~~~p~~tq~~l~e~~~~~~~~~~~~~~~~y~v~L~~s~g~f~a~l~~~~~~~~~l~~~sg~~~~~~~~~~~   80 (674)
                      ||||||++|+|||.||||||+|.++..++.+++++...|+|+||+++|.|||+||++.++++.+|+|+|++.++.++...
T Consensus        79 mt~~~G~~g~dip~eTQ~~l~e~~~~~~~~~~~~~~~~Y~~~lP~~eg~fRa~Lqg~~~~~l~iclesg~~~v~~~~~~~  158 (775)
T PLN02219         79 MTQRMGSCGKDIPLETQFMLLESKDEVEGGNGDDAPTIYTVFLPLLEGQFRAVLQGNDKNEIEICLESGDKAVETNQGLH  158 (775)
T ss_pred             cchhhccCCCcCCcceEEEEEEcCCCccccccccCCcceEEEEeecCCceEEEecCCCCCcEEEEEecCCccccccccce
Confidence            99999999999999999999999964332233344557999999999999999999999999999999999999888889


Q ss_pred             EEEEEeCCChHHHHHHHHHHHHHHhcCCCccccccCCCcccccccccccccccccCHHHHHHHHHHHHhCCCCccEEEEe
Q 005843           81 AVFVNFGDNPFDLVKESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAKFLIID  160 (674)
Q Consensus        81 ~v~v~~g~~p~~~i~~a~~~~~~~~~~~~~~~~k~~P~~~~~~GWcTW~a~~~~vte~~i~~~~~~l~~~Gi~~~~viID  160 (674)
                      .++|++|+|||++|++|++++++|+++|++|++|++|+++|+|||||||+||++|||++|+++++.|+++|+|++|||||
T Consensus       159 ~v~~~~G~dPy~li~~a~~av~~h~~tf~~re~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~~~viID  238 (775)
T PLN02219        159 LVYMHAGTNPFEVIRQAVKAVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIID  238 (775)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhcccccccccccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCceEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCCCCcCCCCCCccccccCCcccCccccCCCCCCCCCCCcCCCChHHHHHHHHHhCCCcEEEEEeeccCccCCcc
Q 005843          161 DGWQDTTNEFQIEGEPFAEGTQFGGRLASIKENNKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLV  240 (674)
Q Consensus       161 DGWq~~~~d~~~~~~~~~~g~~~~~~L~~~~~n~KFp~~~~~~~~~~~GL~~lv~~I~~~~Glk~vgvWha~~GyWgGI~  240 (674)
                      ||||+..++.++.++...+|.||.+||++|++|.||+.. +...+||.|||++|+.||+++||||||||||++||||||+
T Consensus       239 DGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF~~~-~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~  317 (775)
T PLN02219        239 DGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKFQKN-DQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGVK  317 (775)
T ss_pred             cCccccccccccccccccccchhhhhhcccccccccccc-ccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCcC
Confidence            999999888766677888999999999999999999852 1233688999999999999999999999999999999999


Q ss_pred             cCCcCcccccCcccccCCCCCCcccCCccccccccccccCcCCCChHHHHHHHHHHHHHHHhcCCcEEEEccCcchhhhc
Q 005843          241 LNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETIC  320 (674)
Q Consensus       241 p~~~~~~~y~~~~~~p~~~~g~~~~~pd~~~~~~~~~~~g~~l~~p~~~~~fy~~~~~~La~~GVD~VKvD~q~~l~~~~  320 (674)
                      |+++++++|++++++|..+||+..++||+++++  +..+|+++++|+++++||++||+||+++|||+||||+|+.+++++
T Consensus       318 P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a~d~--l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~  395 (775)
T PLN02219        318 PAAAGMEHYDSALAYPVQSPGVLGNQPDIVMDS--LSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLG  395 (775)
T ss_pred             CCCcccccccccccccccCCCccccCcchhhhh--hhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhh
Confidence            999999999999999999999999999999998  888999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhhCCCCceEEeecCCCCccccccccceEecCCccCCCCCChhhHHHHHHHhhhhhcCC
Q 005843          321 SGLGSRVSLTRHFQQALEESIATNFKDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGE  400 (674)
Q Consensus       321 ~~~~~~~~~~~ay~~Al~~s~~~~f~g~~ii~cMs~~~~~l~~~~~~~~~R~SdDf~p~~~~~~~~hi~~na~nsl~~g~  400 (674)
                      .++++|++++++|++||++|++|||+++++|+||||+++++|+.++++++|+||||||++|++|++||++||||+||+|+
T Consensus       396 ~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~CMsh~~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~  475 (775)
T PLN02219        396 AGHGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGE  475 (775)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchhhhcccccceeecccccccCCCccCcchhhhhhhhhHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCccCcccchhHHHHHHHHHHcCCceEeecCCCCCcHHHHHHhhccCCceeeeCCCCCCCccccccccCCCCcceE
Q 005843          401 VVVPDWDMFYSQHCAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRLVLADGSVLRAKYPGRPSRDCLFNDPVMDGKSLL  480 (674)
Q Consensus       401 ~~~pD~DMf~s~h~~a~~Haa~raisggPvyisD~pg~hd~~lL~~lv~pdG~vlr~~~~g~pt~d~lf~dp~~~~~~~L  480 (674)
                      ++|||||||||.|++|++||++||||||||||||+||+||++|||+|++|||+||||+.||+|||||||.||++|++++|
T Consensus       476 ~v~PDWDMFqS~Hp~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~pg~PTrDclF~Dp~~dg~slL  555 (775)
T PLN02219        476 FMQPDWDMFHSLHPAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLPGRPTRDCLFADPARDGTSLL  555 (775)
T ss_pred             ccccCchhceecCccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHhhCCCCceeccccCCCcchhhhccccCCCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCceEEEEeecCCCCCCCccccccccccccccceeeeecCCccchhhhhcCCCCCCcEEEEEecCCeEEeccCC
Q 005843          481 KIWNLNKCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGSLFRLAKA  560 (674)
Q Consensus       481 ki~~~~~~~~vvg~FN~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~a~~~~~~~~~vy~~~~g~~~~~~~~  560 (674)
                      ||||+|+++||||+|||||++ ||++++++++|+.++.++|+.|++.||+++.++++.+|+++|+||+|++|++++++++
T Consensus       556 KIwn~n~~~gviG~FNcqGag-W~~~~~~~~~~~~~~~~~s~~v~~~Dv~~i~~~a~~~w~~~~~vy~~~sg~l~~l~~~  634 (775)
T PLN02219        556 KIWNVNKCTGVVGVFNCQGAG-WCKIEKKTRIHDTSPGTLTGSVCADDVDQIAQVAGEDWSGDSVVYAYKSGEVVRLPKG  634 (775)
T ss_pred             EEEEcccccceEEEEeccCCC-CCchhhccccccCCCcceEEEEcchhccchhhccccCcCCCEEEEEeccCeEEEcCCC
Confidence            999999999999999999998 9999999999999999999999999999999999989999999999999999999989


Q ss_pred             CeEEEEeecCceEEEEEeeeeeeccceeEEEeeccccccCCcceeEEeeee--cC----------------------Ccc
Q 005843          561 ESFGIALKVMQCDVFTVSPIKVYNQKIQFAPIGLTNMYNSGGAVESVDLTN--DA----------------------SSC  616 (674)
Q Consensus       561 ~~~~v~L~~~~~ei~t~~pv~~~~~~~~~A~lGL~~k~~~~aAV~~~~~~~--~~----------------------~~~  616 (674)
                      +.++|+|++++|||||++||+.+..+++||||||++|||++|||+++++..  +.                      ...
T Consensus       635 ~~~~vtL~~~~~Ei~tv~Pv~~~~~~~~fApiGL~~m~n~ggAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (775)
T PLN02219        635 ASIPVTLKVLEYELFHFCPLKEIATNISFAPIGLLDMFNSGGAVEQFEIHMVSDKAPELFDGEISSELSTSLSENRSPTA  714 (775)
T ss_pred             CceEEEecCCcEEEEEEeeEEEecCCcEEEecchhhcccCceeeEEeEeecccccccccccccccccccccccccCCCCc
Confidence            999999999999999999999999889999999999999999999999852  10                      134


Q ss_pred             EEEEEEeecceeeEeecCCCceEEecCeeeeeEEeCCCceEEEEcC--C-CCceeeeeEeC
Q 005843          617 KIHIKGRGGGSFGAYSSTKPSSILLNSKNEEFKFSAEDNLLTVTIP--P-TTSSWDITLCY  674 (674)
Q Consensus       617 ~v~v~lkg~G~~g~Yss~~P~~~~vdg~~~~f~yd~~~gll~v~lp--~-~~~~~~v~i~~  674 (674)
                      .|+|+|||||+||+|||++|++|.|||++++|+|+++||+++|+||  + ++++|.|||++
T Consensus       715 ~v~~~v~G~G~f~aYsS~~P~~c~vd~~~~~f~y~~~sg~~~~~l~~~~~~~~~~~v~~~~  775 (775)
T PLN02219        715 TIALSVRGCGRFGAYSSQRPLKCAVGSTETDFTYDAEVGLLTLTLPVTEEEMYRWHVEIQV  775 (775)
T ss_pred             eEEEEEEcccceeeEecCCCeEEEECCEEeeeEEcCCCCeEEEEccCCcccCceeeEEEeC
Confidence            5999999999999999999999999999999999999999999994  4 78999999985

>PLN02684 Probable galactinol--sucrose galactosyltransferase Back     alignment and domain information
>PLN02355 probable galactinol--sucrose galactosyltransferase 1 Back     alignment and domain information
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
>PLN02711 Probable galactinol--sucrose galactosyltransferase Back     alignment and domain information
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins Back     alignment and domain information
>PLN02229 alpha-galactosidase Back     alignment and domain information
>PLN02692 alpha-galactosidase Back     alignment and domain information
>PLN02808 alpha-galactosidase Back     alignment and domain information
>PLN03231 putative alpha-galactosidase; Provisional Back     alignment and domain information
>PLN02899 alpha-galactosidase Back     alignment and domain information
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase Back     alignment and domain information
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose Back     alignment and domain information
>PRK10658 putative alpha-glucosidase; Provisional Back     alignment and domain information
>PRK10426 alpha-glucosidase; Provisional Back     alignment and domain information
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY Back     alignment and domain information
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus Back     alignment and domain information
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate Back     alignment and domain information
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 Back     alignment and domain information
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride Back     alignment and domain information
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ Back     alignment and domain information
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities Back     alignment and domain information
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase Back     alignment and domain information
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase Back     alignment and domain information
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II Back     alignment and domain information
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end Back     alignment and domain information
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) Back     alignment and domain information
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase Back     alignment and domain information
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain Back     alignment and domain information
>PF13200 DUF4015: Putative glycosyl hydrolase domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query674
3cc1_A433 BH1870 protein, putative alpha-N-acetylgalactosami 7e-06
2yfo_A720 Alpha-galactosidase-sucrose kinase agask; hydrolas 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1zy9_A564 Alpha-galactosidase; TM1192, struc genomics, joint 1e-04
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} Length = 433 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 124 GWCTWDAFYQEVNPQGIKDGLKSLSEGGTPA--KFLIIDDGWQDTTNEFQIEGEPFAEGT 181
           GW +WD +   V  + +    + ++        +++++D  W + T              
Sbjct: 15  GWNSWDCYGASVTEEEVLGNAEYMANHLKKYGWEYIVVDIQWYEPTANSSAYNPFAPLCM 74

Query: 182 QFGGRL 187
              GRL
Sbjct: 75  DEYGRL 80
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* Length = 720 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 Length = 564 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query674
3cc1_A433 BH1870 protein, putative alpha-N-acetylgalactosami 100.0
3hg3_A404 Alpha-galactosidase A; glycoprotein, carbohydrate- 100.0
1uas_A362 Alpha-galactosidase; TIM-barrel, beta-alpha-barrel 100.0
1zy9_A564 Alpha-galactosidase; TM1192, struc genomics, joint 100.0
3lrk_A479 Alpha-galactosidase 1; tetramer, GH27, glycoprotei 100.0
1szn_A417 Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma 100.0
3a5v_A397 Alpha-galactosidase; beta/alpha barrel, N-glycosyl 100.0
4do4_A400 Alpha-N-acetylgalactosaminidase; pharmacological c 100.0
3a21_A 614 Putative secreted alpha-galactosidase; beta-alpha- 100.0
4fnq_A729 Alpha-galactosidase AGAB; glycoside hydrolase, hyd 100.0
3mi6_A745 Alpha-galactosidase; NESG, structural genomics, PS 99.97
2yfo_A720 Alpha-galactosidase-sucrose kinase agask; hydrolas 99.97
2xn2_A732 Alpha-galactosidase; hydrolase, glycosidase; HET: 99.97
2f2h_A773 Putative family 31 glucosidase YICI; BETA8alpha8 b 99.48
4ba0_A817 Alpha-glucosidase, putative, ADG31B; hydrolase; HE 99.46
2g3m_A693 Maltase, alpha-glucosidase; hydrolase, glycoside h 99.37
2xvl_A1020 Alpha-xylosidase, putative, XYL31A; hydrolase, gly 99.13
3nsx_A666 Alpha-glucosidase; structural genomics, PSI-2, pro 99.07
3lpp_A898 Sucrase-isomaltase; glycoside hydrolase family 31, 99.07
3l4y_A875 Maltase-glucoamylase, intestinal; glycoside hydrol 98.99
3a24_A641 Alpha-galactosidase; glycoside hydrolase family 97 98.72
3top_A908 Maltase-glucoamylase, intestinal; membrane, hydrol 98.4
2d73_A738 Alpha-glucosidase SUSB; glycoside hydrolase family 97.55
2x2h_A 1027 Alpha-1,4-glucan lyase isozyme 1; anhydrofructose 97.43
3k1d_A722 1,4-alpha-glucan-branching enzyme; mycobacterium t 84.06
3zss_A695 Putative glucanohydrolase PEP1A; alpha-glucan bios 83.02
1ea9_C583 Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A 81.98
1gcy_A527 Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b 81.55
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} Back     alignment and structure
Probab=100.00  E-value=6.8e-46  Score=410.23  Aligned_cols=384  Identities=18%  Similarity=0.240  Sum_probs=255.1

Q ss_pred             cccCCCcccccccccccccccccCHHHHHHHHHHH----HhCCCCccEEEEecCcccCCCCCcCCCCCCccccccCCccc
Q 005843          113 TKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSL----SEGGTPAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLA  188 (674)
Q Consensus       113 ~k~~P~~~~~~GWcTW~a~~~~vte~~i~~~~~~l----~~~Gi~~~~viIDDGWq~~~~d~~~~~~~~~~g~~~~~~L~  188 (674)
                      .+++|     |||||||+||++|||++|++.++.|    ++.|+  +||+||||||..+++..+-. .+.  ..-...++
T Consensus         9 ~~~pp-----~gwnsW~~~~~~i~e~~i~~~ad~~~~gl~~~G~--~~~~iDDgW~~~~~~~~~y~-~~~--~~~~d~~G   78 (433)
T 3cc1_A            9 ALTPP-----MGWNSWDCYGASVTEEEVLGNAEYMANHLKKYGW--EYIVVDIQWYEPTANSSAYN-PFA--PLCMDEYG   78 (433)
T ss_dssp             TBCCC-----EEEESHHHHTTCCCHHHHHHHHHHHHHHTGGGTC--CEEEECSCTTCCCTTSTTCC-TTS--CSCBCTTS
T ss_pred             CCCCC-----EEEEChhhhCCcCCHHHHHHHHHHHHhcchhhCC--eEEEECCCcCCCCCcccccc-ccc--ccccCCCC
Confidence            45677     9999999999999999999999999    44444  49999999999754321000 000  00012467


Q ss_pred             Ccccc-CCCCCCCCCCCcCCCChHHHHHHHHHhCCCcEEEEEeeccCccCCcccCCcCcccccCccccc-CCCCCCcccC
Q 005843          189 SIKEN-NKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEMKYP-VQSPGNLANM  266 (674)
Q Consensus       189 ~~~~n-~KFp~~~~~~~~~~~GL~~lv~~I~~~~Glk~vgvWha~~GyWgGI~p~~~~~~~y~~~~~~p-~~~~g~~~~~  266 (674)
                      +|.++ +|||+.     ..+.||++++++||+ +||| ||||+.+.-.+.++.|+++.   |.+..... ...++    .
T Consensus        79 ~~~~~~~kFP~~-----~~~~Gl~~l~~~ih~-~Glk-~Giw~~p~i~~~~v~~~s~~---~~~~~~~~di~~~~----~  144 (433)
T 3cc1_A           79 RLLPATNRFPSA-----KNGAGFKPLSDAIHD-LGLK-FGIHIMRGIPRQAVYENSPV---LGSTKTAREIAHTN----S  144 (433)
T ss_dssp             CBCCCTTTCGGG-----TTTTTTHHHHHHHHH-TTCE-EEEEEESSEEHHHHHHTCBC---TTSSCBHHHHEETT----C
T ss_pred             CEeECCccCCCc-----ccCCCHHHHHHHHHH-cCCe-eEEEeCCCCchhccCCCCcc---ccccceecccccCC----c
Confidence            78876 489931     112399999999999 6999 89998872112234555532   22210000 00000    0


Q ss_pred             CccccccccccccCcCCCChHHHHHHHHHHHHHHHhcCCcEEEEccCcchhhhcCCCCCchhHHHHHHHHHHHHHHhhCC
Q 005843          267 RDLSIDCMEMEKYGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICSGLGSRVSLTRHFQQALEESIATNFK  346 (674)
Q Consensus       267 pd~~~~~~~~~~~g~~l~~p~~~~~fy~~~~~~La~~GVD~VKvD~q~~l~~~~~~~~~~~~~~~ay~~Al~~s~~~~f~  346 (674)
                      . ..+..   ...++++.+|+ +++||+.+++.|++|||||||+|+|... .+. .+  ..+..++|++||+++      
T Consensus       145 ~-~~~~~---~~~~lD~~~p~-~~~~~~~~~~~l~~~GvDyvK~D~~~~~-~~~-~~--~~~~~~~~~~aL~~~------  209 (433)
T 3cc1_A          145 I-CPWNT---DMYGVDPTKEG-AQSYYNSLFELYAQWGVDFVKVDDIAAS-RLY-DT--HLEEIKMIQRAIQAC------  209 (433)
T ss_dssp             C-BTTBT---TEEEECTTSTT-HHHHHHHHHHHHHHTTCCEEEEESCSCT-TSS-CC--CHHHHHHHHHHHHHS------
T ss_pred             c-cCCCC---CceeecCCCHH-HHHHHHHHHHHHHHcCCCEEEeCCcccc-cCC-cc--cHHHHHHHHHHHHhc------
Confidence            0 00110   11246666665 8999999999999999999999999762 221 11  345567778887653      


Q ss_pred             CCceEEeecCCCCc----cccccccceEecCCccCCCCCChhhHHHH-HHHhhhhhcCCCcCCCCccCcccc--------
Q 005843          347 DNSIICCMAQNTDS----IFHSKRSAITRASDDYYPKNPTTQTLHIA-AVAFNSIFLGEVVVPDWDMFYSQH--------  413 (674)
Q Consensus       347 g~~ii~cMs~~~~~----l~~~~~~~~~R~SdDf~p~~~~~~~~hi~-~na~nsl~~g~~~~pD~DMf~s~h--------  413 (674)
                      +|+|++|+|+++..    .+..+++|+||+|+|++|.|+...  |++ .+++.+.++++++|||+|||+++|        
T Consensus       210 gr~i~~slc~g~~~~~~~~~~~~~~n~wR~s~D~~~~w~~~~--~~~~~~~~~~~~~~~g~~nD~Dml~vg~~g~~~~~~  287 (433)
T 3cc1_A          210 GRPMVLSLSPGPAPIKYAHHFKTNANMWRITDDFWDDWSLLY--QMFERCEVWEKHIGTGHWPDCGMLPLGHIGIRSVDG  287 (433)
T ss_dssp             SSCCEEECCCSBSSEESCSSSCCTTGGGCCEECCCSCHHHHH--HHHHHHHHHHHSCCCSCCCBCCCBCCSEECTTCSSS
T ss_pred             CCCEEEEecCCCCChhhhhhhhhhCcEEEeccCccccHHHHH--HHHHHHHHHHhhcCCCccCChHHhcccCcccccccc
Confidence            78999999986332    244688999999999999998753  333 355677788999999999999985        


Q ss_pred             -----------hhHHHHHHHHHHcCCceEeecCCCCCcHHHHHHh-------hccCCceeeeCCCCCCCccccccccCCC
Q 005843          414 -----------CAAEFHAVARAVGGCGVYVSDKPGKHDFKILKRL-------VLADGSVLRAKYPGRPSRDCLFNDPVMD  475 (674)
Q Consensus       414 -----------~~a~~Haa~raisggPvyisD~pg~hd~~lL~~l-------v~pdG~vlr~~~~g~pt~d~lf~dp~~~  475 (674)
                                 .+.++|+++|||+++||+|||.+.+.+-+-|+-|       +.+||..-|+          ++.+    
T Consensus       288 ~~~~~~~~lt~~E~rt~~alwai~~spL~ig~dl~~~~~~~~~lL~N~eviavnqdg~~~~~----------v~~~----  353 (433)
T 3cc1_A          288 PGGDRWTRFTKDEQLTMMNLWAICHSPLMFGGELRDNDEWTLSLLTNEGILSINQKSVLNRF----------VYRE----  353 (433)
T ss_dssp             SSSSEECSSCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHCCHHHHHHHHHCEEEEE----------EEEE----
T ss_pred             ccccccCCCCHHHHHHHHHHHHHhcCceEecCccccCCHHHHHHhcChhheeecCCCcCcee----------eEec----
Confidence                       4679999999999999999999887664433333       3356543332          1111    


Q ss_pred             CcceEEEEeec--cCceEEEEeecCCCCCCCccccccccccccccceeeeecCCccchhhhhcCCCCCCcEEEEEecCCe
Q 005843          476 GKSLLKIWNLN--KCTGVIGVFNCQGAGSWPCTEKESSVQENVDSVISGKVSPADVEYLEEVSGKQWTGDCAVFSFNTGS  553 (674)
Q Consensus       476 ~~~~Lki~~~~--~~~~vvg~FN~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~a~~~~~~~~~vy~~~~g~  553 (674)
                      +  -+.||...  .+..+|++||.+...                .+++  ++.+++.         ..+.|-|+.--+++
T Consensus       354 ~--~~~vw~~~l~~g~~~val~N~~~~~----------------~~~~--~~~~~lg---------l~~~~~v~Dlw~~~  404 (433)
T 3cc1_A          354 E--DKVAWAANGRNGEAYVALFNLHDQQ----------------KTLQ--FRLDMVG---------IMETVQLFNVWDRS  404 (433)
T ss_dssp             T--TEEEEEEECSSSCEEEEEEECSSSC----------------EEEE--ECGGGTT---------CCSCEEEEETTTTE
T ss_pred             C--CcEEEEEECCCCCEEEEEEeCCCCC----------------EEEE--EEHHHcC---------CCCceEEEECCCCC
Confidence            1  14677653  445689999976422                1122  3334432         12367888887776


Q ss_pred             -EEeccCCCeEEEEeecCceEEEEEeee
Q 005843          554 -LFRLAKAESFGIALKVMQCDVFTVSPI  580 (674)
Q Consensus       554 -~~~~~~~~~~~v~L~~~~~ei~t~~pv  580 (674)
                       +.....+..++++|++.++.+|.+.|.
T Consensus       405 ~~g~~~~~~~~~~~v~~hg~~l~~l~~~  432 (433)
T 3cc1_A          405 FLQSLAPSESFQIELKPHQSMMLKLSPD  432 (433)
T ss_dssp             EEEEECTTCCEEEEECTTCEEEEEEEEC
T ss_pred             ccccccCCceEEEEECCCcEEEEEEEeC
Confidence             433433348999999999999999885
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A* Back     alignment and structure
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 Back     alignment and structure
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 Back     alignment and structure
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A* Back     alignment and structure
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* Back     alignment and structure
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea} Back     alignment and structure
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A* Back     alignment and structure
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A* Back     alignment and structure
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* Back     alignment and structure
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} Back     alignment and structure
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* Back     alignment and structure
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* Back     alignment and structure
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* Back     alignment and structure
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* Back     alignment and structure
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* Back     alignment and structure
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A* Back     alignment and structure
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* Back     alignment and structure
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* Back     alignment and structure
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* Back     alignment and structure
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A* Back     alignment and structure
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Back     alignment and structure
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A* Back     alignment and structure
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Back     alignment and structure
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Back     alignment and structure
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Back     alignment and structure
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 674
d1szna2314 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [T 2e-13
d1zy9a2348 c.1.8.13 (A:178-525) Alpha-galactosidase GalA cata 4e-12
d1uasa2273 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [ 1e-06
d1r46a2292 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) 2e-04
d1ktba2293 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallu 4e-04
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]} Length = 314 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Trichoderma reesei [TaxId: 51453]

 Score = 69.5 bits (169), Expect = 2e-13
 Identities = 44/340 (12%), Positives = 84/340 (24%), Gaps = 68/340 (20%)

Query: 115 QLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPA---KFLIIDDGWQDTTNEFQ 171
           ++P +    GW +W+A++ +++        + +   G       ++ IDD W        
Sbjct: 10  KVPSL----GWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVD 65

Query: 172 IEGEPFAEGTQFGGRLASIKENNKFRGTTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHA 231
             G      T+F                         GL   V  +     +        
Sbjct: 66  --GHIAPNATRFPDG--------------------IDGLAKKVHALGLKLGIYSTAGTAT 103

Query: 232 LMGYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEKYGIGAIDPDKISQ 291
             GY   L                               +D  +   +G+  +  D    
Sbjct: 104 CAGYPASLGYE---------------------------DVDAADFADWGVDYLKYD-NCN 135

Query: 292 FYDDLHKYLVSQGVDGVKVDVQNILETICS------GLGSRVSLTRHFQQALEESIATNF 345
              D     V+   D VK        T         G     S +     A+  ++A   
Sbjct: 136 VPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMRNALAKQS 195

Query: 346 KDNSIICCMAQNTDSIFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPD 405
            +  +  C+    D       + I+    D    N  + T  +   +F    +      D
Sbjct: 196 HEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNLNSFKLNSVDFWGHND 255

Query: 406 WDMFYSQHCAA-----EFHAVARAVGGCGVYVSDKPGKHD 440
            DM    +          H    A     + +     +  
Sbjct: 256 ADMLEVGNGNLTAAETRTHFALWAAMKSPLLIGTDLAQLS 295
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 348 Back     information, alignment and structure
>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Length = 273 Back     information, alignment and structure
>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Length = 292 Back     information, alignment and structure
>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 293 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query674
d1szna2314 Melibiase {Trichoderma reesei [TaxId: 51453]} 100.0
d1uasa2273 Melibiase {Rice (Oryza sativa) [TaxId: 4530]} 100.0
d1r46a2292 Melibiase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1zy9a2348 Alpha-galactosidase GalA catalytic domain {Thermot 100.0
d1ktba2293 Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d2f2ha4338 Putative glucosidase YicI, domain 2 {Escherichia c 99.29
d1gcya2357 G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase 89.67
d1g5aa2554 Amylosucrase {Neisseria polysaccharea [TaxId: 489] 87.59
d1wzla3382 Maltogenic amylase, central domain {Thermoactinomy 80.63
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Trichoderma reesei [TaxId: 51453]

Probab=100.00  E-value=2.4e-40  Score=346.27  Aligned_cols=268  Identities=16%  Similarity=0.200  Sum_probs=199.4

Q ss_pred             cccccccccccccCHHHHHHHHHHHHhCCC---CccEEEEecCcccCCCCCcCCCCCCccccccCCcccCcccc-CCCCC
Q 005843          123 FGWCTWDAFYQEVNPQGIKDGLKSLSEGGT---PAKFLIIDDGWQDTTNEFQIEGEPFAEGTQFGGRLASIKEN-NKFRG  198 (674)
Q Consensus       123 ~GWcTW~a~~~~vte~~i~~~~~~l~~~Gi---~~~~viIDDGWq~~~~d~~~~~~~~~~g~~~~~~L~~~~~n-~KFp~  198 (674)
                      ||||||++|+++|||++|++.++.|++.|+   ++++|+||||||..+++.                +++|.++ +||| 
T Consensus        14 ~GwnSW~~~~~~i~e~~i~~~a~~l~e~gl~~~G~~~~~iDdGW~~~~~~~----------------~G~~~~d~~kFP-   76 (314)
T d1szna2          14 LGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRV----------------DGHIAPNATRFP-   76 (314)
T ss_dssp             EEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCB----------------TTBCCBCTTTCT-
T ss_pred             CcccchhhhcccCCHHHHHHHHHHHHHcCccccCcEEEEECCCccCCCCCC----------------CCCeeeCHhhcC-
Confidence            899999999999999999999999999875   467999999999876543                4566765 6999 


Q ss_pred             CCCCCCcCCCChHHHHHHHHHhCCCcEEEEEeeccCccCCcccCCcCcccccCcccccCCCCCCcccCCccccccccccc
Q 005843          199 TTGDDQKETSGLKDFVLDIKKNFCLKYVYVWHALMGYWGGLVLNSSGTKMYNPEMKYPVQSPGNLANMRDLSIDCMEMEK  278 (674)
Q Consensus       199 ~~~~~~~~~~GL~~lv~~I~~~~Glk~vgvWha~~GyWgGI~p~~~~~~~y~~~~~~p~~~~g~~~~~pd~~~~~~~~~~  278 (674)
                               +||++++++||+ +|+| +|||+++.+.|..-+|++..   ++..               +...    ...
T Consensus        77 ---------~Gl~~~~~~i~~-~G~k-~Giw~~p~~~~~~~~p~~~~---~~~~---------------~~~~----~~~  123 (314)
T d1szna2          77 ---------DGIDGLAKKVHA-LGLK-LGIYSTAGTATCAGYPASLG---YEDV---------------DAAD----FAD  123 (314)
T ss_dssp             ---------THHHHHHHHHHH-TTCE-EEEEEESSSBCTTSCBCCTT---CHHH---------------HHHH----HHH
T ss_pred             ---------CchHHHHHHHHh-cCCe-EEEeecccccccCCCccccc---cccc---------------chhh----hhh
Confidence                     799999999999 7999 89999998777666665421   1110               0000    011


Q ss_pred             cCcCCCChHHHHHHHHHHHHHHHhcCCcEEEEccCcchhhhcC------CCCCchhHHHHHHHHHHHHHHhhCCCCceEE
Q 005843          279 YGIGAIDPDKISQFYDDLHKYLVSQGVDGVKVDVQNILETICS------GLGSRVSLTRHFQQALEESIATNFKDNSIIC  352 (674)
Q Consensus       279 ~g~~l~~p~~~~~fy~~~~~~La~~GVD~VKvD~q~~l~~~~~------~~~~~~~~~~ay~~Al~~s~~~~f~g~~ii~  352 (674)
                      .|+++.+| +++.+++.+++.++++||||+|+|++........      ..............++.+++++..++.-+..
T Consensus       124 ~~~d~~~~-d~~~~~~~~~~~~~~~g~d~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  202 (314)
T d1szna2         124 WGVDYLKY-DNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMRNALAKQSHEIVLSM  202 (314)
T ss_dssp             TTCCEEEE-ECCCCCGGGSCSSBCCCTTTSCCBGGGBCCTTTCTTBCCTTCCGGGSHHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred             cCCccccc-hHHHHHHHHHHHHHHhCCceEEecccccchhccCcccCccccCcchhhHHHHHHHHHHHHHHhCCCeEEEe
Confidence            23444433 4556777777888999999999999876433211      1111112233444566666888877666777


Q ss_pred             eecCCCCc-cccccccceEecCCccCCCCCChhhHHHHHHHhhhhhcCCCcCCCCccCcccc-----hhHHHHHHHHHHc
Q 005843          353 CMAQNTDS-IFHSKRSAITRASDDYYPKNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQH-----CAAEFHAVARAVG  426 (674)
Q Consensus       353 cMs~~~~~-l~~~~~~~~~R~SdDf~p~~~~~~~~hi~~na~nsl~~g~~~~pD~DMf~s~h-----~~a~~Haa~rais  426 (674)
                      |+++.... .+....++++|+|+|++|.|...+. ++..++++..+.+...|||+||+..++     .+.++|+++|||+
T Consensus       203 c~~~~~~~~~~~~~~~~~~R~s~D~~~~w~~~~~-~~~~~~~~~~~~~~~~~~DpDml~~g~~~lt~~e~r~~~sl~a~~  281 (314)
T d1szna2         203 CIWGQADVFSWGNSTGISWRMSDDISPNWGSVTR-ILNLNSFKLNSVDFWGHNDADMLEVGNGNLTAAETRTHFALWAAM  281 (314)
T ss_dssp             CCTTGGGHHHHGGGTCSEEECSSCCCSSHHHHHH-HHHHHHTCGGGCBTTBEEECCSCCTTCTTCCHHHHHHHHHHHHHT
T ss_pred             cCCCCCCchhhhhhcccceeecCCcccccchHHH-HHHHHHHHHHHhcCCccCCchhcccCCCCCCHHHHHHHHHHHHHH
Confidence            87776543 2455788999999999999987654 677788999999999999999999865     3679999999999


Q ss_pred             CCceEeecCCCCCcHH
Q 005843          427 GCGVYVSDKPGKHDFK  442 (674)
Q Consensus       427 ggPvyisD~pg~hd~~  442 (674)
                      |+|++|||.+.+.+-+
T Consensus       282 ~~pl~~g~dl~~~~~~  297 (314)
T d1szna2         282 KSPLLIGTDLAQLSQN  297 (314)
T ss_dssp             TCCEEECSCGGGCCHH
T ss_pred             hCchhccCCcccCCHH
Confidence            9999999887665544
>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Back     information, alignment and structure
>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Back     information, alignment and structure