Citrus Sinensis ID: 005848

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670----

MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL

ccccccccccEEEEEEccccccccccHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHcccEEcccccccccccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEcccccccccccHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEccccccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccEEEEEEcccccccccccHHHHHHHHHHcccccHHHHHHcccccccccccccccccc

ccccccccccEEEEEEEccccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccEcEcccccHHHHHHHHHHHHHHHHcccccccHHHHHHcccEEEEccccccEEEEEEEEEccccccccHHHHHHHHHHHHHcccccccEcccccHHHcccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHcccccccccccEEEcccccEEEEEEcccccEEEEEEEEccccccHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHccccEccccEcccccccccccEEEEEcHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHEEcccccccEEEcccccccc

msvsnddenkvfgivfrtppkdstgiphilehsvlcgsrkyplkepFVELLKGSLNTFlnaftypdrtcypvastntkdfyNLVDVYFDAVFFPKCVEDFQTFqqegwhfkldnpseditykgvvfnemkgvysqpdniLGRAAQqalfpdnaygvdsggdpkvipkltFEEFKEFHrkyyhpsnariwfygdddpneRLRILSEASMNTIEFslrenntgsfprGLSLMLRSMGkwiydmnpfeplkyekPLMALKARLAEEGSKAVFSPLIEkyilnnphcvtvemqpdpekasrDEAAEKEILAKVKSSMTKEDLAELARATEELRlkqetpdppealrsvpslslrdipkepirvptevgdingvkvlqhdlftndvLYTEVVFDMSSLKQELLPLIPLFCQSLKemgtkdlsfVQLDQligrktggisvypftssihgkedpcccmvvrgkamagqAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMEnrlrgsghGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSregclinmtadgknlknsERFVGKFldmlptnspvervkwkahlpsaneaiviptqvnyvgKAANIFETGYKLNGSAYVISKHISNVWLWdrvrvsggayggfcdfdshsgvl

msvsnddenkvFGIVFrtppkdstgipHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIefslrenntgsfprGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILakvkssmtkeDLAELARATEElrlkqetpdppealrsvpslslrdipkepirvptevgdingVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFtssihgkedPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLInmtadgknlknSERFVGKFLDMLPTNSPVERVKWKAHLPSaneaiviptqvNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL

**********VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTV**********************************************************************IRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQF*****************GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDF*******

MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKAS*DEAAEKEILA************ELARATEE******************SLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQ**************GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDM********************EAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL

********NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQP*********AAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL

*SV*NDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSH****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		674	2.2.26 [Sep-21-2011]
Q8VY06		1080	Presequence protease 2, c	yes	no	0.697	0.435	0.804	0.0
Q9LJL3		1080	Presequence protease 1, c	no	no	0.697	0.435	0.797	0.0
Q46205		973	Protein HypA OS=Clostridi	yes	no	0.304	0.210	0.582	4e-75
Q7ZVZ6		1023	Presequence protease, mit	yes	no	0.327	0.216	0.482	3e-59
Q5JRX3		1037	Presequence protease, mit	no	no	0.311	0.202	0.483	6e-57
Q6PF24		1027	Presequence protease, mit	N/A	no	0.307	0.201	0.481	5e-56
Q28BR5		1027	Presequence protease, mit	yes	no	0.311	0.204	0.474	6e-56
Q8K411		1036	Presequence protease, mit	yes	no	0.311	0.202	0.469	1e-55
Q5RDG3		1037	Presequence protease, mit	yes	no	0.311	0.202	0.474	3e-55
O42908		882	Mitochondrial presequence	no	no	0.317	0.242	0.481	7e-51

>sp\|Q8VY06\|PREP2_ARATH Presequence protease 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP2 PE=1 SV=1	Back alignment and function desciption

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/470 (80%), Positives = 426/470 (90%)

Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
           EASMNTIEFSLRENNTGS PRGLSLML+S+ KWIYDM+PFEPLKYE+PL +LKAR+AE+G
Sbjct: 482 EASMNTIEFSLRENNTGSSPRGLSLMLQSIAKWIYDMDPFEPLKYEEPLKSLKARIAEKG 541

Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
           SK+VFSPLIE+YILNNPHCVT+EMQPDPEKAS +EA EK IL KVK+SMT+EDL ELARA
Sbjct: 542 SKSVFSPLIEEYILNNPHCVTIEMQPDPEKASLEEAEEKSILEKVKASMTEEDLTELARA 601

Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
           TEELRLKQETPDPP+AL+ VPSL+L DIPKEPI VPTEVGDINGVKVL++DLFTN++LYT
Sbjct: 602 TEELRLKQETPDPPDALKCVPSLNLSDIPKEPIYVPTEVGDINGVKVLRNDLFTNNILYT 661

Query: 385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
           EVVFDM S+K ELL LIPLFCQSL EMGT+DL+FVQL+QLIGRKTGGISVYP TSS++G+
Sbjct: 662 EVVFDMGSVKHELLQLIPLFCQSLLEMGTQDLTFVQLNQLIGRKTGGISVYPLTSSVYGR 721

Query: 445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
           +DPC  ++VRGK+M G+AEDLFNL NCVLQEV+ TDQQRFKQFVSQS+ARMENRLRGSG 
Sbjct: 722 DDPCSKIIVRGKSMVGRAEDLFNLMNCVLQEVRFTDQQRFKQFVSQSRARMENRLRGSGQ 781

Query: 505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
           GIAAARMDA LN AGW+SEQMGG+SYLEFL  LE+KVDQDW GISSSLEEIRRSFLSR G
Sbjct: 782 GIAAARMDAMLNVAGWMSEQMGGLSYLEFLHTLEQKVDQDWEGISSSLEEIRRSFLSRNG 841

Query: 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
           C++NMTADGK+L N+E++VGKFLD+LP N   E V W A LP  NEAIVIPTQVNYVGKA
Sbjct: 842 CIVNMTADGKSLTNTEKYVGKFLDLLPENPSGELVTWDARLPLRNEAIVIPTQVNYVGKA 901

Query: 625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL 674
            NI+ +GYKL+GS+YVISKHISN WLWDRVRVSGGAYGG CDFDSHSGV 
Sbjct: 902 GNIYSSGYKLDGSSYVISKHISNTWLWDRVRVSGGAYGGSCDFDSHSGVF 951

ATP-independent protease that degrades both mitochondrial and chloroplastic transit peptides after their cleavage. Also degrades other unstructured peptides. Specific for peptides in the range of 10 to 65 residues. Shows a preference for cleavage after small polar residues and before basic residues, but without any positional preference.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp\|Q9LJL3\|PREP1_ARATH Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2	Back alignment and function description

>sp\|Q46205\|HYPA_CLOPE Protein HypA OS=Clostridium perfringens (strain 13 / Type A) GN=hypA PE=4 SV=2	Back alignment and function description

>sp\|Q7ZVZ6\|PREP_DANRE Presequence protease, mitochondrial OS=Danio rerio GN=pitrm1 PE=2 SV=1	Back alignment and function description

>sp\|Q5JRX3\|PREP_HUMAN Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1 PE=1 SV=2	Back alignment and function description

>sp\|Q6PF24\|PREP_XENLA Presequence protease, mitochondrial OS=Xenopus laevis GN=pitrm1 PE=2 SV=1	Back alignment and function description

>sp\|Q28BR5\|PREP_XENTR Presequence protease, mitochondrial OS=Xenopus tropicalis GN=pitrm1 PE=2 SV=1	Back alignment and function description

>sp\|Q8K411\|PREP_MOUSE Presequence protease, mitochondrial OS=Mus musculus GN=Pitrm1 PE=2 SV=1	Back alignment and function description

>sp\|Q5RDG3\|PREP_PONAB Presequence protease, mitochondrial OS=Pongo abelii GN=PITRM1 PE=2 SV=1	Back alignment and function description

>sp\|O42908\|CYM1_SCHPO Mitochondrial presequence protease OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cym1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		674
326488169		957	predicted protein [Hordeum vulgare subsp	0.980	0.690	0.674	0.0
357137984		961	PREDICTED: presequence protease 1, chlor	0.986	0.691	0.675	0.0
225428772		1080	PREDICTED: presequence protease 2, chlor	0.697	0.435	0.855	0.0
297741302		1098	unnamed protein product [Vitis vinifera]	0.670	0.411	0.855	0.0
224123316		1007	predicted protein [Populus trichocarpa]	0.691	0.462	0.848	0.0
224103569		1006	predicted protein [Populus trichocarpa]	0.692	0.464	0.842	0.0
255555501		774	zinc metalloprotease, putative [Ricinus	0.697	0.607	0.834	0.0
356497516		1078	PREDICTED: presequence protease 2, chlor	0.697	0.435	0.821	0.0
358343875		698	Presequence protease [Medicago truncatul	0.695	0.671	0.810	0.0
449495595		1084	PREDICTED: LOW QUALITY PROTEIN: preseque	0.697	0.433	0.831	0.0

>gi\|326488169\|dbj\|BAJ89923.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/707 (67%), Positives = 551/707 (77%), Gaps = 46/707 (6%)

Query: 1   MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLN 60
           MSV+NDDENKVFGIVFRTPPK+STGIPHILEHSVLCGSRKYPLKEPFVELLKGSL+TFLN
Sbjct: 136 MSVANDDENKVFGIVFRTPPKNSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFLN 195

Query: 61  AFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDIT 120
           AFTYPDRTCYPVASTNTKDFYNLVDVY DAVFFPKCVEDFQTFQQEGWH++L+NP E+I+
Sbjct: 196 AFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVEDFQTFQQEGWHYELNNPEEEIS 255

Query: 121 YKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKY 180
           YKGVVFNEMKGVYSQPDNI+GR +QQAL PDN YGVDSGGDP  IP LTFEEFKEFHRK+
Sbjct: 256 YKGVVFNEMKGVYSQPDNIMGRVSQQALSPDNTYGVDSGGDPNEIPNLTFEEFKEFHRKF 315

Query: 181 YHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGL------------- 227
           YHPSNARIWFYGDDD  ERLRILSE  ++  E S   N +   P+ L             
Sbjct: 316 YHPSNARIWFYGDDDTKERLRILSEY-LDLFEASPARNESKVMPQRLFKEPVRIAEKYPA 374

Query: 228 ----SLMLRSM--GKWIYDMNPFE-----------PLKYEKPLMALKARLAEEG-SKAVF 269
                L  + M    W+    P +            L    P   L+  L E G  +A+ 
Sbjct: 375 GQEGDLKKKYMVCTNWLLSEEPLDVETELALGFLDHLLLGTPASPLRRILLESGLGEAIV 434

Query: 270 SPLIEKYILNNPHCVTVEMQPDPEKASRD--EAAEKEILAKVKSSMTKEDLAELARATEE 327
              +E  +L     + ++        S D  E  E+ ++  +K      +LAELARAT+E
Sbjct: 435 GGGVEDELLQPQFSIGLK------GVSEDNIEKVEELVMQILK------NLAELARATKE 482

Query: 328 LRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVV 387
           L+ KQETPDPPEAL++VPSLSL+DIPK+PI VP EVG+INGVKVLQHDLFTNDV+Y+EVV
Sbjct: 483 LKDKQETPDPPEALKAVPSLSLQDIPKKPIHVPIEVGEINGVKVLQHDLFTNDVVYSEVV 542

Query: 388 FDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDP 447
           FDM S+K+E L L+PLFCQSL EMGTKD+ FVQL+QLIGRKTGGISVYP TSSI G +DP
Sbjct: 543 FDMGSMKKEHLQLLPLFCQSLLEMGTKDMDFVQLNQLIGRKTGGISVYPLTSSIKGTDDP 602

Query: 448 CCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIA 507
              +VVRGKAM+ + EDLF+L NC+LQ+VQ T+QQRFKQFVSQSKARMENRLRGSGHGIA
Sbjct: 603 LTRIVVRGKAMSTRVEDLFHLMNCLLQDVQFTEQQRFKQFVSQSKARMENRLRGSGHGIA 662

Query: 508 AARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLI 567
           AARMDAKLN AGWISEQMGGVSYLE+L+ LE K+DQDW  IS+SLEE+R+S  S+EGCLI
Sbjct: 663 AARMDAKLNAAGWISEQMGGVSYLEYLRDLETKIDQDWDRISASLEEMRKSLFSKEGCLI 722

Query: 568 NMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANI 627
           N+T+D KNL+ S + + KFLD LP+   +    W + LPS NEAIVIPTQVNYVGKA N+
Sbjct: 723 NITSDSKNLEKSGQHIAKFLDALPSAPSLGSDPWLSRLPSVNEAIVIPTQVNYVGKAGNL 782

Query: 628 FETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL 674
           +++GY+LNGSAYVISKHISN WLWDRVRVSGGAYGGFCDFD+HSGV 
Sbjct: 783 YQSGYQLNGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDTHSGVF 829

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357137984\|ref\|XP_003570578.1\| PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like isoform 2 [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|225428772\|ref\|XP_002282024.1\| PREDICTED: presequence protease 2, chloroplastic/mitochondrial-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297741302\|emb\|CBI32433.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224123316\|ref\|XP_002330286.1\| predicted protein [Populus trichocarpa] gi\|222871321\|gb\|EEF08452.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224103569\|ref\|XP_002313107.1\| predicted protein [Populus trichocarpa] gi\|222849515\|gb\|EEE87062.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255555501\|ref\|XP_002518787.1\| zinc metalloprotease, putative [Ricinus communis] gi\|223542168\|gb\|EEF43712.1\| zinc metalloprotease, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356497516\|ref\|XP_003517606.1\| PREDICTED: presequence protease 2, chloroplastic/mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|358343875\|ref\|XP_003636021.1\| Presequence protease [Medicago truncatula] gi\|355501956\|gb\|AES83159.1\| Presequence protease [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449495595\|ref\|XP_004159889.1\| PREDICTED: LOW QUALITY PROTEIN: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		674
TAIR\|locus:2012176		1080	PREP2 "presequence protease 2"	0.695	0.434	0.805	3e-311
TAIR\|locus:2094138		1080	PREP1 "presequence protease 1"	0.695	0.434	0.799	3.9e-309
DICTYBASE\|DDB_G0271506		1066	pitrm1 "peptidase M16 family p	0.318	0.201	0.454	1.9e-91
ZFIN\|ZDB-GENE-040426-2876		1023	pitrm1 "pitrilysin metalloprot	0.327	0.216	0.482	1.9e-91
RGD\|1310998		954	Pitrm1 "pitrilysin metallopept	0.320	0.226	0.470	7e-89
UNIPROTKB\|F1NGG7		1032	PITRM1 "Uncharacterized protei	0.320	0.209	0.466	3e-88
UNIPROTKB\|E1C9F5		1033	PITRM1 "Uncharacterized protei	0.320	0.209	0.466	3e-88
UNIPROTKB\|F1P2D3		1038	PITRM1 "Uncharacterized protei	0.320	0.208	0.466	3.2e-88
UNIPROTKB\|C9JSL2		1038	PITRM1 "Presequence protease,	0.311	0.202	0.483	4.8e-87
UNIPROTKB\|Q5JRX3		1037	PITRM1 "Presequence protease,	0.311	0.202	0.483	6.1e-87

TAIR\|locus:2012176 PREP2 "presequence protease 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2001 (709.4 bits), Expect = 3.0e-311, Sum P(2) = 3.0e-311
 Identities = 378/469 (80%), Positives = 426/469 (90%)

Query:   205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
             EASMNTIEFSLRENNTGS PRGLSLML+S+ KWIYDM+PFEPLKYE+PL +LKAR+AE+G
Sbjct:   482 EASMNTIEFSLRENNTGSSPRGLSLMLQSIAKWIYDMDPFEPLKYEEPLKSLKARIAEKG 541

Query:   265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
             SK+VFSPLIE+YILNNPHCVT+EMQPDPEKAS +EA EK IL KVK+SMT+EDL ELARA
Sbjct:   542 SKSVFSPLIEEYILNNPHCVTIEMQPDPEKASLEEAEEKSILEKVKASMTEEDLTELARA 601

Query:   325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
             TEELRLKQETPDPP+AL+ VPSL+L DIPKEPI VPTEVGDINGVKVL++DLFTN++LYT
Sbjct:   602 TEELRLKQETPDPPDALKCVPSLNLSDIPKEPIYVPTEVGDINGVKVLRNDLFTNNILYT 661

Query:   385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
             EVVFDM S+K ELL LIPLFCQSL EMGT+DL+FVQL+QLIGRKTGGISVYP TSS++G+
Sbjct:   662 EVVFDMGSVKHELLQLIPLFCQSLLEMGTQDLTFVQLNQLIGRKTGGISVYPLTSSVYGR 721

Query:   445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
             +DPC  ++VRGK+M G+AEDLFNL NCVLQEV+ TDQQRFKQFVSQS+ARMENRLRGSG 
Sbjct:   722 DDPCSKIIVRGKSMVGRAEDLFNLMNCVLQEVRFTDQQRFKQFVSQSRARMENRLRGSGQ 781

Query:   505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
             GIAAARMDA LN AGW+SEQMGG+SYLEFL  LE+KVDQDW GISSSLEEIRRSFLSR G
Sbjct:   782 GIAAARMDAMLNVAGWMSEQMGGLSYLEFLHTLEQKVDQDWEGISSSLEEIRRSFLSRNG 841

Query:   565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
             C++NMTADGK+L N+E++VGKFLD+LP N   E V W A LP  NEAIVIPTQVNYVGKA
Sbjct:   842 CIVNMTADGKSLTNTEKYVGKFLDLLPENPSGELVTWDARLPLRNEAIVIPTQVNYVGKA 901

Query:   625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGV 673
              NI+ +GYKL+GS+YVISKHISN WLWDRVRVSGGAYGG CDFDSHSGV
Sbjct:   902 GNIYSSGYKLDGSSYVISKHISNTWLWDRVRVSGGAYGGSCDFDSHSGV 950

GO:0003824 "catalytic activity" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0016485 "protein processing" evidence=IDA

TAIR\|locus:2094138 PREP1 "presequence protease 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0271506 pitrm1 "peptidase M16 family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2876 pitrm1 "pitrilysin metalloproteinase 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1310998 Pitrm1 "pitrilysin metallopeptidase 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NGG7 PITRM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C9F5 PITRM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P2D3 PITRM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|C9JSL2 PITRM1 "Presequence protease, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5JRX3 PITRM1 "Presequence protease, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY06	PREP2_ARATH	3, ., 4, ., 2, 4, ., -	0.8042	0.6973	0.4351	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		674
COG1026		978	COG1026, COG1026, Predicted Zn-dependent peptidase	2e-99
COG1026		978	COG1026, COG1026, Predicted Zn-dependent peptidase	4e-93
pfam08367		248	pfam08367, M16C_assoc, Peptidase M16C associated	8e-70
PTZ00432		1119	PTZ00432, PTZ00432, falcilysin; Provisional	1e-62
PTZ00432		1119	PTZ00432, PTZ00432, falcilysin; Provisional	9e-62
COG0612		438	COG0612, PqqL, Predicted Zn-dependent peptidases [	1e-19
COG1025		937	COG1025, Ptr, Secreted/periplasmic Zn-dependent pe	3e-11
pfam00675		149	pfam00675, Peptidase_M16, Insulinase (Peptidase fa	2e-06
pfam05193		182	pfam05193, Peptidase_M16_C, Peptidase M16 inactive	2e-06
PRK15101		961	PRK15101, PRK15101, protease3; Provisional	3e-05

>gnl\|CDD\|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]	Back alignment and domain information

 Score =  326 bits (837), Expect = 2e-99
 Identities = 116/205 (56%), Positives = 150/205 (73%), Gaps = 3/205 (1%)

Query: 1   MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLN 60
             + N+D N VF I F+T P DSTG+ HILEH+VLCGS+KYP+K+PF ++LK SLNTFLN
Sbjct: 34  AHIKNEDPNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLN 93

Query: 61  AFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDIT 120
           AFT+PD+T YP +S N KDFYNL+ VY DAVF P   +  ++F QEGW  +  + S  + 
Sbjct: 94  AFTFPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTK--ESFLQEGWRIEFKDESN-LK 150

Query: 121 YKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKY 180
           YKGVV+NEMKG YS  +++L RA QQ+LFP   YGV+SGGDPK IP LT+EEF+ FH+K+
Sbjct: 151 YKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKH 210

Query: 181 YHPSNARIWFYGDDDPNERLRILSE 205
           YHPSN +I+ YG+      L  + E
Sbjct: 211 YHPSNCKIFVYGNIPTERLLDFIEE 235

Length = 978

>gnl\|CDD\|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|116948 pfam08367, M16C_assoc, Peptidase M16C associated	Back alignment and domain information

>gnl\|CDD\|240416 PTZ00432, PTZ00432, falcilysin; Provisional	Back alignment and domain information

>gnl\|CDD\|240416 PTZ00432, PTZ00432, falcilysin; Provisional	Back alignment and domain information

>gnl\|CDD\|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16)	Back alignment and domain information

>gnl\|CDD\|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain	Back alignment and domain information

>gnl\|CDD\|185056 PRK15101, PRK15101, protease3; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		674
KOG2019		998	consensus Metalloendoprotease HMP1 (insulinase sup	100.0
COG1026		978	Predicted Zn-dependent peptidases, insulinase-like	100.0
PTZ00432		1119	falcilysin; Provisional	100.0
KOG0961		1022	consensus Predicted Zn2+-dependent endopeptidase,	100.0
PRK15101		961	protease3; Provisional	100.0
PF08367		248	M16C_assoc: Peptidase M16C associated; InterPro: I	100.0
KOG0959		974	consensus N-arginine dibasic convertase NRD1 and r	100.0
COG0612		438	PqqL Predicted Zn-dependent peptidases [General fu	100.0
TIGR02110		696	PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe	100.0
TIGR02110		696	PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe	100.0
COG1025		937	Ptr Secreted/periplasmic Zn-dependent peptidases,	100.0
COG0612		438	PqqL Predicted Zn-dependent peptidases [General fu	100.0
KOG0960		467	consensus Mitochondrial processing peptidase, beta	100.0
KOG0960		467	consensus Mitochondrial processing peptidase, beta	99.95
PRK15101		961	protease3; Provisional	99.95
KOG2067		472	consensus Mitochondrial processing peptidase, alph	99.92
PTZ00432		1119	falcilysin; Provisional	99.9
KOG2067		472	consensus Mitochondrial processing peptidase, alph	99.84
COG1025		937	Ptr Secreted/periplasmic Zn-dependent peptidases,	99.8
PF00675		149	Peptidase_M16: Insulinase (Peptidase family M16) T	99.79
KOG0959		974	consensus N-arginine dibasic convertase NRD1 and r	99.76
PF00675		149	Peptidase_M16: Insulinase (Peptidase family M16) T	99.61
KOG2583		429	consensus Ubiquinol cytochrome c reductase, subuni	99.53
KOG2583		429	consensus Ubiquinol cytochrome c reductase, subuni	99.33
PF05193		184	Peptidase_M16_C: Peptidase M16 inactive domain; In	99.32
COG1026		978	Predicted Zn-dependent peptidases, insulinase-like	99.14
PF05193		184	Peptidase_M16_C: Peptidase M16 inactive domain; In	99.09
KOG0961		1022	consensus Predicted Zn2+-dependent endopeptidase,	98.76
KOG2019		998	consensus Metalloendoprotease HMP1 (insulinase sup	98.16
PF03410		590	Peptidase_M44: Protein G1; InterPro: IPR005072 In	93.89
PHA03081		595	putative metalloprotease; Provisional	91.92
PF03410		590	Peptidase_M44: Protein G1; InterPro: IPR005072 In	89.8
PHA03081		595	putative metalloprotease; Provisional	82.12

>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.1e-107  Score=831.38  Aligned_cols=665  Identities=58%  Similarity=0.934  Sum_probs=619.2

Q ss_pred             CceeecCCCcEEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhH
Q 005848            1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF   80 (674)
Q Consensus         1 ~~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~   80 (674)
                      +|++++|+|++|+++|+++|.+.+|++|+|||.++|||.+||.+++|++||++++.+++||+|+.|+|.|++++++++||
T Consensus        66 lhl~reD~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf  145 (998)
T KOG2019|consen   66 LHLDREDENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDF  145 (998)
T ss_pred             EeeccCCCCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhCCCCccccchhhhcccccccCCCCC---CccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCC
Q 005848           81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSE---DITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVD  157 (674)
Q Consensus        81 ~~~l~l~~d~~~~P~~~~~~~~f~~e~~~~~~~~~~~---~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~  157 (674)
                      .++.++|+|+.+.|.+.+.+  |.|||||+|.+++..   +..+|+||++||++..++|++++...+++.+||++.|+..
T Consensus       146 ~NL~dVYLDAtffPklr~~d--F~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~  223 (998)
T KOG2019|consen  146 YNLRDVYLDATFFPKLRKLD--FQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVN  223 (998)
T ss_pred             HHHHHHhhhcccchHHHhhh--hhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCcccccccc
Confidence            99999999999999999999  999999999876544   4559999999999999999999999999999999999999


Q ss_pred             CCCCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhh---------------------------------
Q 005848          158 SGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILS---------------------------------  204 (674)
Q Consensus       158 ~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~---------------------------------  204 (674)
                      ++|+|.+|+.||++++++||++||||+|+.|+.+||++.++.+.+++                                 
T Consensus       224 SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~kp~rvve~~p~  303 (998)
T KOG2019|consen  224 SGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDKPRRVVEKGPA  303 (998)
T ss_pred             CCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccccCceeeeecCC
Confidence            99999999999999999999999999999999999999999998887                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 005848          205 --------------------------------------------------------------------------------  204 (674)
Q Consensus       205 --------------------------------------------------------------------------------  204 (674)
                                                                                                      
T Consensus       304 d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGv  383 (998)
T KOG2019|consen  304 DPGDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGV  383 (998)
T ss_pred             CCCCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccc
Confidence                                                                                            


Q ss_pred             -----------------------------hcccccccccccccCCCCcchhHHHHHHhhhhcccCCCccccccccchHHH
Q 005848          205 -----------------------------EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMA  255 (674)
Q Consensus       205 -----------------------------~~~~~~~e~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  255 (674)
                                                   ++.++++|++.++ ....+  |+.++...++.|.++.||++.|.+...++.
T Consensus       384 seediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~-qst~f--GL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~  460 (998)
T KOG2019|consen  384 SEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKH-QSTGF--GLSLMQSIISKWINDMDPFEPLKFEEQLKK  460 (998)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhc-cccch--hHHHHHHHhhhhccCCCccchhhhhhHHHH
Confidence                                         4456677777764 33334  899999999999999999999999999999


Q ss_pred             HHHHHHccCCcchHHHHHHHhhccCCCeEEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCC
Q 005848          256 LKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETP  335 (674)
Q Consensus       256 l~~~l~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~  335 (674)
                      |+.++++. ++.+|+.++++|+.+|.|++++++.||+++.+.+.++++..|++.+..+++++++.+-+...++.+.|+  
T Consensus       461 lk~~l~ek-~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~eL~~kQ~--  537 (998)
T KOG2019|consen  461 LKQRLAEK-SKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAGEELREKQS--  537 (998)
T ss_pred             HHHHHhhh-chhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhC--
Confidence            99999986 566999999999999999999999999999999999999999999999999999999987777777666  


Q ss_pred             CChhhhccCCCCCCCCCCCCCCCCCccccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCC
Q 005848          336 DPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKD  415 (674)
Q Consensus       336 ~~~e~l~~lp~l~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~  415 (674)
                       .|+++.|+|+|.++||++.+...++++...||++|.++..+||+|+|+++.++.++++++..+|+++||..|+++||+.
T Consensus       538 -tp~dlsClPtL~vsDIp~~~~~~~~~v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~eL~PylPlfc~sll~lGt~~  616 (998)
T KOG2019|consen  538 -TPEDLSCLPTLNVSDIPKTIPYTKLEVGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEELLPYLPLFCQSLLNLGTGD  616 (998)
T ss_pred             -CccccccccccccccCCCCCCccceeeeeccCceeEEeeccCCceEEEEEeeccccCcHHhhcchHHHHHHHHhcCCCc
Confidence             5699999999999999999887788888999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhcccceEEeeeeccCCCCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhh
Q 005848          416 LSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARM  495 (674)
Q Consensus       416 ~~~~el~~~i~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~  495 (674)
                      .++.|+.++|.+++||+++++..+++.+.+.+.-.+.++..|+.++.+++++|+..++.++.|.+.++++.++++..+.+
T Consensus       617 lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~  696 (998)
T KOG2019|consen  617 LSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRM  696 (998)
T ss_pred             ccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHh
Confidence            99999999999999999999998877788888888999999999999999999999999999998899999999999999


Q ss_pred             hhhhccCcHHHHHHHHHhhcChhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcc
Q 005848          496 ENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKN  575 (674)
Q Consensus       496 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~  575 (674)
                      .+.+.++||.+|..++.+++.+.+++++.++|+.+.+++..+.+..+++|+.|.+.|.++.+.+.+.+||.+.|+.|-..
T Consensus       697 ~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q  776 (998)
T KOG2019|consen  697 TNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQ  776 (998)
T ss_pred             hccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999988


Q ss_pred             hhhHHHHHHHHHhcCCCC-CCcccccccccCCCCcEEE--EcC-cCeeEEEEecccCCCCCCcchHHHHHHHHhcCccch
Q 005848          576 LKNSERFVGKFLDMLPTN-SPVERVKWKAHLPSANEAI--VIP-TQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLW  651 (674)
Q Consensus       576 ~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~s~L~  651 (674)
                      ...+++.+++|+..+|.. +......|....+-..+++  .+| .||+|++.+..++++++||-++++|++..|.+.+||
T Consensus       777 ~~~vEkav~kFl~~lp~e~p~g~~st~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vpyt~~d~asl~vlS~~lt~k~Lh  856 (998)
T KOG2019|consen  777 LTNVEKAVEKFLDSLPRENPSGSKSTWDARLPLRSEAIRVVIPTFQVNYVGKAGLGVPYTHPDGASLQVLSKLLTNKWLH  856 (998)
T ss_pred             chhHHHHHHHHHHhccccCCCCCccCccccCCCCceeEEEeccccchhhhhhhcccccCCCCCCcHHHHHHHHHHHHHHH
Confidence            888999999999999843 2222333444444444444  778 668999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCcccccCCCCCCC
Q 005848          652 DRVRVSGGAYGGFCDFDSHSGVL  674 (674)
Q Consensus       652 ~~IRekG~aYg~~~~~~~~~G~f  674 (674)
                      .+|||||||||.+|++++..|+|
T Consensus       857 ~evRekGGAYGgg~s~~sh~Gvf  879 (998)
T KOG2019|consen  857 DEVREKGGAYGGGCSYSSHSGVF  879 (998)
T ss_pred             HHHHHhcCccCCccccccccceE
Confidence            99999999999999999999987

>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]	Back alignment and domain information

>PTZ00432 falcilysin; Provisional	Back alignment and domain information

>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15101 protease3; Provisional	Back alignment and domain information

>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]	Back alignment and domain information

>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF	Back alignment and domain information

>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF	Back alignment and domain information

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]	Back alignment and domain information

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15101 protease3; Provisional	Back alignment and domain information

>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00432 falcilysin; Provisional	Back alignment and domain information

>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification	Back alignment and domain information

>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification	Back alignment and domain information

>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]	Back alignment and domain information

>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]	Back alignment and domain information

>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]	Back alignment and domain information

>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PHA03081 putative metalloprotease; Provisional	Back alignment and domain information

>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PHA03081 putative metalloprotease; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		674
2fge_A		995	Crystal Structure Of Presequence Protease Prep From		0.0
3s5h_A		1193	Crystal Structures Of Falcilysin, A M16 Metalloprot		1e-44
3s5h_A		1193	Crystal Structures Of Falcilysin, A M16 Metalloprot		3e-23

>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From Arabidopsis Thaliana Length = 995

Back alignment and structure

Iteration: 1

Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/470 (77%), Positives = 407/470 (86%) Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264 EAS NTIEFSLRENNTGSFPRGLSL L+S+ KWIYD +PFEPLKY +PL ALK R+AEEG Sbjct: 398 EASXNTIEFSLRENNTGSFPRGLSLXLQSISKWIYDXDPFEPLKYTEPLKALKTRIAEEG 457 Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324 SKAVFSPLIEK ILNN H VT+E QPDPEKA+++E EK IL KVK++ T+EDLAELARA Sbjct: 458 SKAVFSPLIEKLILNNSHRVTIEXQPDPEKATQEEVEEKNILEKVKAAXTEEDLAELARA 517 Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384 TEEL+LKQETPDPPEALR VPSL+L DIPKEP VPTEVGDINGVKVL+HDLFTND++YT Sbjct: 518 TEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYT 577 Query: 385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444 EVVFD+ SLK ELLPL+PLFCQSL E GTKDL+FVQL+QLIGRKTGGISVYP TSS+ GK Sbjct: 578 EVVFDIGSLKHELLPLVPLFCQSLLEXGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGK 637 Query: 445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504 ++PC ++VRGK+ AG+A+DLFNL NC+LQEVQ TDQQRFKQFVSQS+AR ENRLRGSGH Sbjct: 638 DEPCSKIIVRGKSXAGRADDLFNLXNCLLQEVQFTDQQRFKQFVSQSRARXENRLRGSGH 697 Query: 505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564 GIAAAR DA LN AGW SEQ GG+SYLEFL LE+KVD+DW GISSSLEEIRRS L+R G Sbjct: 698 GIAAARXDAXLNIAGWXSEQXGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNG 757 Query: 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624 C++N TADGK+L N E+ V KFLD+LP N V W LP NEAIVIPTQVNYVGKA Sbjct: 758 CIVNXTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIVIPTQVNYVGKA 817 Query: 625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL 674 NI+ TGY+L+GSAYVISKHISN WLWDRVRVSGGAYGGFCDFDSHSGV Sbjct: 818 GNIYSTGYELDGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGVF 867

PyMOL of 2fge

>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From The Malaria Parasite Plasmodium Falciparum Length = 1193

Back alignment and structure

>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From The Malaria Parasite Plasmodium Falciparum Length = 1193

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		674
2fge_A		995	Atprep2;, zinc metalloprotease (insulinase family)	1e-122
2fge_A		995	Atprep2;, zinc metalloprotease (insulinase family)	3e-85
3s5m_A		1193	Falcilysin; M16 metalloprotease, peptidase, hydrol	4e-77
3s5m_A		1193	Falcilysin; M16 metalloprotease, peptidase, hydrol	2e-75
3gwb_A		434	Peptidase M16 inactive domain family protein; pept	2e-17
1q2l_A		939	Protease III; hydrolase; 2.20A {Escherichia coli s	3e-16
3amj_B		424	Zinc peptidase inactive subunit; alpha/beta, zinc	1e-15
3d3y_A		425	Uncharacterized protein; APC29635, conserved prote	3e-15
3cww_A		990	Insulysin, insulin-degrading enzyme, insulinase; A	4e-15
3ami_A		445	Zinc peptidase; alpha/beta, zinc binding, hydrolas	5e-15
3go9_A		492	Insulinase family protease; IDP00573, structural g	2e-13
3hdi_A		421	Processing protease; CAGE structure, M16B peptidas	4e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1pp9_A		446	Ubiquinol-cytochrome C reductase complex core Pro	3e-11
1hr6_B		443	Beta-MPP, mitochondrial processing peptidase beta	4e-11
3eoq_A		406	Putative zinc protease; two similar domains of bet	4e-11
1hr6_A		475	Alpha-MPP, mitochondrial processing peptidase alph	1e-10
3cx5_A		431	Cytochrome B-C1 complex subunit 1, mitochondrial;	2e-09
1pp9_B		439	Ubiquinol-cytochrome C reductase complex core Pro	5e-08
3cx5_B		352	Cytochrome B-C1 complex subunit 2, mitochondrial;	4e-05
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-04

>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995	Back alignment and structure

 Score =  387 bits (995), Expect = e-122
 Identities = 375/470 (79%), Positives = 419/470 (89%)

Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
           EASMNTIEFSLRENNTGSFPRGLSLML+S+ KWIYDM+PFEPLKY +PL ALK R+AEEG
Sbjct: 398 EASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEG 457

Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
           SKAVFSPLIEK ILNN H VT+EMQPDPEKA+++E  EK IL KVK++MT+EDLAELARA
Sbjct: 458 SKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARA 517

Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
           TEEL+LKQETPDPPEALR VPSL+L DIPKEP  VPTEVGDINGVKVL+HDLFTND++YT
Sbjct: 518 TEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYT 577

Query: 385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
           EVVFD+ SLK ELLPL+PLFCQSL EMGTKDL+FVQL+QLIGRKTGGISVYP TSS+ GK
Sbjct: 578 EVVFDIGSLKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGK 637

Query: 445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
           ++PC  ++VRGK+MAG+A+DLFNL NC+LQEVQ TDQQRFKQFVSQS+ARMENRLRGSGH
Sbjct: 638 DEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGH 697

Query: 505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
           GIAAARMDA LN AGW+SEQMGG+SYLEFL  LE+KVD+DW GISSSLEEIRRS L+R G
Sbjct: 698 GIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNG 757

Query: 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
           C++NMTADGK+L N E+ V KFLD+LP N     V W   LP  NEAIVIPTQVNYVGKA
Sbjct: 758 CIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIVIPTQVNYVGKA 817

Query: 625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVL 674
            NI+ TGY+L+GSAYVISKHISN WLWDRVRVSGGAYGGFCDFDSHSGV 
Sbjct: 818 GNIYSTGYELDGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGVF 867

PyMOL of 2fge

>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995	Back alignment and structure

>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193	Back alignment and structure

>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193	Back alignment and structure

>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434	Back alignment and structure

>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939	Back alignment and structure

>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424	Back alignment and structure

>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425	Back alignment and structure

>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990	Back alignment and structure

>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445	Back alignment and structure

>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492	Back alignment and structure

>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446

Back alignment and structure

>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443	Back alignment and structure

>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406	Back alignment and structure

>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475	Back alignment and structure

>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431	Back alignment and structure

>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439

Back alignment and structure

>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		674
3s5m_A		1193	Falcilysin; M16 metalloprotease, peptidase, hydrol	100.0
2fge_A		995	Atprep2;, zinc metalloprotease (insulinase family)	100.0
3cww_A		990	Insulysin, insulin-degrading enzyme, insulinase; A	100.0
1q2l_A		939	Protease III; hydrolase; 2.20A {Escherichia coli s	100.0
3hdi_A		421	Processing protease; CAGE structure, M16B peptidas	100.0
3eoq_A		406	Putative zinc protease; two similar domains of bet	100.0
1pp9_A		446	Ubiquinol-cytochrome C reductase complex core Pro	100.0
3eoq_A		406	Putative zinc protease; two similar domains of bet	100.0
1hr6_B		443	Beta-MPP, mitochondrial processing peptidase beta	100.0
3ami_A		445	Zinc peptidase; alpha/beta, zinc binding, hydrolas	100.0
3gwb_A		434	Peptidase M16 inactive domain family protein; pept	100.0
3ami_A		445	Zinc peptidase; alpha/beta, zinc binding, hydrolas	100.0
3hdi_A		421	Processing protease; CAGE structure, M16B peptidas	100.0
1hr6_A		475	Alpha-MPP, mitochondrial processing peptidase alph	99.97
1pp9_A		446	Ubiquinol-cytochrome C reductase complex core Pro	99.97
3amj_B		424	Zinc peptidase inactive subunit; alpha/beta, zinc	99.97
1hr6_B		443	Beta-MPP, mitochondrial processing peptidase beta	99.97
1pp9_B		439	Ubiquinol-cytochrome C reductase complex core Pro	99.97
1hr6_A		475	Alpha-MPP, mitochondrial processing peptidase alph	99.97
3d3y_A		425	Uncharacterized protein; APC29635, conserved prote	99.97
3gwb_A		434	Peptidase M16 inactive domain family protein; pept	99.96
3cx5_A		431	Cytochrome B-C1 complex subunit 1, mitochondrial;	99.96
3amj_B		424	Zinc peptidase inactive subunit; alpha/beta, zinc	99.96
3go9_A		492	Insulinase family protease; IDP00573, structural g	99.95
1q2l_A		939	Protease III; hydrolase; 2.20A {Escherichia coli s	99.95
1pp9_B		439	Ubiquinol-cytochrome C reductase complex core Pro	99.95
3go9_A		492	Insulinase family protease; IDP00573, structural g	99.95
3cww_A		990	Insulysin, insulin-degrading enzyme, insulinase; A	99.95
3cx5_A		431	Cytochrome B-C1 complex subunit 1, mitochondrial;	99.94
3d3y_A		425	Uncharacterized protein; APC29635, conserved prote	99.94
3cx5_B		352	Cytochrome B-C1 complex subunit 2, mitochondrial;	99.93
3s5m_A		1193	Falcilysin; M16 metalloprotease, peptidase, hydrol	99.93
3cx5_B		352	Cytochrome B-C1 complex subunit 2, mitochondrial;	99.93
2fge_A		995	Atprep2;, zinc metalloprotease (insulinase family)	99.91
3ih6_A		197	Putative zinc protease; bordetella pertussis toham	98.56
3ih6_A		197	Putative zinc protease; bordetella pertussis toham	96.97

>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A	Back alignment and structure

Probab=100.00  E-value=1.5e-93  Score=838.97  Aligned_cols=670  Identities=28%  Similarity=0.466  Sum_probs=578.7

Q ss_pred             CceeecCC---CcEEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCH
Q 005848            1 MSVSNDDE---NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNT   77 (674)
Q Consensus         1 ~~~~~~d~---~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~   77 (674)
                      +|+.++|+   +++|.+|+++||.+.+|+|||+|||+|+||++||..+++.++..+.+|+++||+|+.|+|+|++.+.+.
T Consensus        99 l~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~  178 (1193)
T 3s5m_A           99 ISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNN  178 (1193)
T ss_dssp             EEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSH
T ss_pred             EEEECCCCCeEEEEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCH
Confidence            35667765   478999999999999999999999999999999999988888766689999999999999999987788


Q ss_pred             hhHHHHHHHHHhhhhCCCCccccchhhhcccccccCCC--------------CCCccchhHHHHHhhhccCChHHHHHHH
Q 005848           78 KDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNP--------------SEDITYKGVVFNEMKGVYSQPDNILGRA  143 (674)
Q Consensus        78 ~~~~~~l~l~~d~~~~P~~~~~~~~f~~e~~~~~~~~~--------------~~~~~~~~~v~~e~~~~~~~p~~~~~~~  143 (674)
                      ++++++|++++|++++|.|++++.+|.+|+||+|+++.              +.++..|++|++||++..++|..++.+.
T Consensus       179 ~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~  258 (1193)
T 3s5m_A          179 KDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHE  258 (1193)
T ss_dssp             HHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHH
Confidence            99999999999999999999987789999999998632              2345568999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccc----------
Q 005848          144 AQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF----------  213 (674)
Q Consensus       144 ~~~~~~~~~p~~~~~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~----------  213 (674)
                      +.+.+|++|||+++++|++++|+++|++++++||++||+|+|++|+++||+|+++++++++ ..|+.++.          
T Consensus       259 l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~-~~f~~~~~~~~~~~~~~~  337 (1193)
T 3s5m_A          259 EMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVD-QYLGQLDYSKYRDDAVES  337 (1193)
T ss_dssp             HHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHH-HHHTTCCGGGCCCCCCCC
T ss_pred             HHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHH-HHhccCCCCCCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999986 21111100          


Q ss_pred             ------------------------------------------c-----------------------------ccc-----
Q 005848          214 ------------------------------------------S-----------------------------LRE-----  217 (674)
Q Consensus       214 ------------------------------------------~-----------------------------~~~-----  217 (674)
                                                                .                             ..+     
T Consensus       338 ~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~  417 (1193)
T 3s5m_A          338 VEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLL  417 (1193)
T ss_dssp             CCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHHH
T ss_pred             cCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCccHHHHHH
Confidence                                                      0                             000     


Q ss_pred             -----------------------------------------------cCC------------CCc---------------
Q 005848          218 -----------------------------------------------NNT------------GSF---------------  223 (674)
Q Consensus       218 -----------------------------------------------~~~------------~~~---------------  223 (674)
                                                                     ...            ..+               
T Consensus       418 vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~g  497 (1193)
T 3s5m_A          418 IINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEG  497 (1193)
T ss_dssp             HHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCCCCHHHHHHHhcCCeeeecccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcC
Confidence                                                           000            000               


Q ss_pred             ------------------------chhHHHHHHhhhhcccCCCccccccccchHHHHHHHHHccCCcchHHHHHHHhhcc
Q 005848          224 ------------------------PRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN  279 (674)
Q Consensus       224 ------------------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~~~~~  279 (674)
                                              |.|+.+.......|.+++||...+.+...++.|++.+..  ++.+++.++++|+.+
T Consensus       498 i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~--~~~~~~~li~~yll~  575 (1193)
T 3s5m_A          498 FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKN--EPMYLEKFVEKHFIN  575 (1193)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHH--STTHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHhcc
Confidence                                    001111112234677788888888888889999988854  245999999999998


Q ss_pred             CCCeEEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCChhhhccCCCCCCCCCCCCCCCC
Q 005848          280 NPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRV  359 (674)
Q Consensus       280 ~~~~~~i~~~~d~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~~~~e~l~~lp~l~~~di~~~~~~~  359 (674)
                      |.|++++++.|++++.++..+.+++.|++++..+|++|++++.++.+.+.++|+++++++++++||+|+++||++....+
T Consensus       576 n~~~~~~~~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~  655 (1193)
T 3s5m_A          576 NAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEV  655 (1193)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCC
T ss_pred             CCceEEEEEEcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCChhhHHhCCcCcHHHcCCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             Cccc--------------------------------------------------------------cccCCceEEEeecC
Q 005848          360 PTEV--------------------------------------------------------------GDINGVKVLQHDLF  377 (674)
Q Consensus       360 ~~~~--------------------------------------------------------------~~~nG~~v~~~~~~  377 (674)
                      |..+                                                              ...||++|++++.+
T Consensus       656 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~  735 (1193)
T 3s5m_A          656 PVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMP  735 (1193)
T ss_dssp             CCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCeEEEEEECC
Confidence            7652                                                              01379999999999


Q ss_pred             CCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC------CCCCCeeEE
Q 005848          378 TNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH------GKEDPCCCM  451 (674)
Q Consensus       378 ~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~------~~~~~~~~~  451 (674)
                      ||||||++++|+++.+++++++++++|+.+|++.||+++|+.||+++|+.++||+++++...+..      +.....+++
T Consensus       736 TNGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~  815 (1193)
T 3s5m_A          736 TTGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF  815 (1193)
T ss_dssp             CTTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred             CCCeEEEEEEEECCCCCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceE
Confidence            99999999999999999999999999999999999999999999999999999999998754311      112236889


Q ss_pred             EEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHHHHhchhhHH
Q 005848          452 VVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYL  531 (674)
Q Consensus       452 ~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~  531 (674)
                      .++++||.++++++++|++++|++|.|++.+|+++++++.++.+++.+.++||.+|+.++.+.+++.+++.+.++|++++
T Consensus       816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~  895 (1193)
T 3s5m_A          816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY  895 (1193)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred             EEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCC----CC-----------c
Q 005848          532 EFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTN----SP-----------V  596 (674)
Q Consensus       532 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~----~~-----------~  596 (674)
                      .+++++.++++++++.++++|+++|+++|+++|++++|+|+.+..+++.+.+++++++|+..    ..           +
T Consensus       896 ~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~  975 (1193)
T 3s5m_A          896 LKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDP  975 (1193)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCC
T ss_pred             HHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999976677777777777665420    00           0


Q ss_pred             cccccc---------ccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhcCccchHHHhhcCCCCCccccc
Q 005848          597 ERVKWK---------AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDF  667 (674)
Q Consensus       597 ~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~IRekG~aYg~~~~~  667 (674)
                      ....+.         ......++.+..|.+|+|++.|++..+.++||++++.|+++|||++|||++|||||||||++|++
T Consensus       976 ~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgGAYg~~s~~ 1055 (1193)
T 3s5m_A          976 TVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGVFADI 1055 (1193)
T ss_dssp             CCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTCCSEEEEEE
T ss_pred             cccccccccccccccccccccceeEecCCcceEEEEEecCCCCCCCchHHHHHHHHHHCccHHHHHHHhcCCeeEEEEec
Confidence            000010         01134567889999999999999999999999999999999999999999999998899999998


Q ss_pred             CCCCCCC
Q 005848          668 DSHSGVL  674 (674)
Q Consensus       668 ~~~~G~f  674 (674)
                      . ..|.|
T Consensus      1056 ~-~~G~f 1061 (1193)
T 3s5m_A         1056 E-YDGSV 1061 (1193)
T ss_dssp             C-TTSEE
T ss_pred             c-CCCcE
Confidence            7 66754

PyMOL of 3s5m

>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1	Back alignment and structure

>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...	Back alignment and structure

>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1	Back alignment and structure

>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}	Back alignment and structure

>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}	Back alignment and structure

Back alignment and structure

>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}	Back alignment and structure

>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*	Back alignment and structure

>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C	Back alignment and structure

>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}	Back alignment and structure

>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C	Back alignment and structure

>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}	Back alignment and structure

>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*	Back alignment and structure

Back alignment and structure

>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}	Back alignment and structure

>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*	Back alignment and structure

Back alignment and structure

>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*	Back alignment and structure

>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}	Back alignment and structure

>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}	Back alignment and structure

>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*	Back alignment and structure

>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}	Back alignment and structure

>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}	Back alignment and structure

>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1	Back alignment and structure

Back alignment and structure

>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}	Back alignment and structure

>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...	Back alignment and structure

>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*	Back alignment and structure

>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}	Back alignment and structure

>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*	Back alignment and structure

>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A	Back alignment and structure

>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*	Back alignment and structure

>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1	Back alignment and structure

>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A	Back alignment and structure

>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		674
d2fgea1		258	d.185.1.1 (A:540-797) Presequence protease 1, PREP	7e-79
d2fgea4		257	d.185.1.1 (A:15-271) Presequence protease 1, PREP1	5e-49
d2fgea3		268	d.185.1.1 (A:272-539) Presequence protease 1, PREP	9e-46
d2fgea2		196	d.185.1.1 (A:798-993) Presequence protease 1, PREP	6e-19
d1ppja1		232	d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1	6e-11
d3cx5a1		213	d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1	5e-09
d1hr6b1		222	d.185.1.1 (B:24-245) Mitochondrial processing pept	7e-09
d1ppjb1		219	d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2	5e-08
d1hr6a1		220	d.185.1.1 (A:14-233) Mitochondrial processing pept	7e-08
d3cx5b1		202	d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2	6e-07
d1q2la4		240	d.185.1.1 (A:24-263) Protease III {Escherichia col	2e-06
d1q2la1		229	d.185.1.1 (A:504-732) Protease III {Escherichia co	1e-05

>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 258	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Presequence protease 1, PREP1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  249 bits (638), Expect = 7e-79
 Identities = 197/255 (77%), Positives = 225/255 (88%)

Query: 347 LSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQ 406
           L+L DIPKEP  VPTEVGDINGVKVL+HDLFTND++YTEVVFD+ SLK ELLPL+PLFCQ
Sbjct: 1   LNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQ 60

Query: 407 SLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLF 466
           SL EMGTKDL+FVQL+QLIGRKTGGISVYP TSS+ GK++PC  ++VRGK+MAG+A+DLF
Sbjct: 61  SLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLF 120

Query: 467 NLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMG 526
           NL NC+LQEVQ TDQQRFKQFVSQS+ARMENRLRGSGHGIAAARMDA LN AGW+SEQMG
Sbjct: 121 NLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMG 180

Query: 527 GVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKF 586
           G+SYLEFL  LE+KVD+DW GISSSLEEIRRS L+R GC++NMTADGK+L N E+ V KF
Sbjct: 181 GLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKF 240

Query: 587 LDMLPTNSPVERVKW 601
           LD+LP N     V W
Sbjct: 241 LDLLPENPSGGLVTW 255

PyMOL of d2fgea1

>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257	Back information, alignment and structure

>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 268	Back information, alignment and structure

>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196	Back information, alignment and structure

>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232	Back information, alignment and structure

>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213	Back information, alignment and structure

>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222	Back information, alignment and structure

>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219	Back information, alignment and structure

>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220	Back information, alignment and structure

>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202	Back information, alignment and structure

>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240	Back information, alignment and structure

>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		674
d2fgea4		257	Presequence protease 1, PREP1 {Thale cress (Arabid	100.0
d2fgea1		258	Presequence protease 1, PREP1 {Thale cress (Arabid	100.0
d1hr6a1		220	Mitochondrial processing peptidase (MPP) alpha cha	99.96
d1ppjb1		219	Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T	99.96
d1ppja1		232	Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T	99.95
d1hr6b1		222	Mitochondrial processing peptidase (MPP) beta chai	99.95
d1q2la4		240	Protease III {Escherichia coli [TaxId: 562]}	99.95
d3cx5a1		213	Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc	99.95
d3cx5b1		202	Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc	99.93
d1hr6b1		222	Mitochondrial processing peptidase (MPP) beta chai	99.92
d1hr6a1		220	Mitochondrial processing peptidase (MPP) alpha cha	99.91
d1ppja1		232	Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T	99.91
d1q2la4		240	Protease III {Escherichia coli [TaxId: 562]}	99.91
d1ppjb1		219	Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T	99.89
d3cx5a1		213	Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc	99.89
d3cx5b1		202	Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc	99.85
d2fgea4		257	Presequence protease 1, PREP1 {Thale cress (Arabid	99.73
d2fgea3		268	Presequence protease 1, PREP1 {Thale cress (Arabid	99.54
d1q2la1		229	Protease III {Escherichia coli [TaxId: 562]}	99.5
d1q2la1		229	Protease III {Escherichia coli [TaxId: 562]}	99.5
d2fgea2		196	Presequence protease 1, PREP1 {Thale cress (Arabid	99.41
d1hr6b2		217	Mitochondrial processing peptidase (MPP) beta chai	98.66
d1ppjb2		204	Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T	98.57
d1hr6a2		237	Mitochondrial processing peptidase (MPP) alpha cha	98.56
d3cx5a2		218	Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc	98.26
d1ppja2		209	Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T	98.23
d1ppjb2		204	Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T	97.64
d1hr6b2		217	Mitochondrial processing peptidase (MPP) beta chai	97.48
d1ppja2		209	Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T	97.44
d1hr6a2		237	Mitochondrial processing peptidase (MPP) alpha cha	97.21
d3cx5a2		218	Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc	96.86
d2fgea2		196	Presequence protease 1, PREP1 {Thale cress (Arabid	95.54
d2fgea1		258	Presequence protease 1, PREP1 {Thale cress (Arabid	94.66
d1q2la2		228	Protease III {Escherichia coli [TaxId: 562]}	91.96
d2fgea3		268	Presequence protease 1, PREP1 {Thale cress (Arabid	91.84
d1q2la2		228	Protease III {Escherichia coli [TaxId: 562]}	90.56

>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Presequence protease 1, PREP1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.1e-41  Score=332.98  Aligned_cols=212  Identities=85%  Similarity=1.437  Sum_probs=202.3

Q ss_pred             CceeecCCCcEEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhH
Q 005848            1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF   80 (674)
Q Consensus         1 ~~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~   80 (674)
                      +|+.++|++++|.+|+++||.+.+|+||+||||+|+||++||..+.+.+++.+.+|+++||+|+.|+|+|++.+.+.+++
T Consensus        36 ~~i~~~~~~~~f~i~~~t~p~~~~G~aH~LEHm~f~GS~k~p~~~~~~~~~~~~~g~~~NA~T~~d~T~Y~~~~~~~~~~  115 (257)
T d2fgea4          36 MSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDF  115 (257)
T ss_dssp             EEEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHH
T ss_pred             EEEecCCCccEEEEEeCCCCCCCcChhHHHHHHhcCCCCCCCCCcHHHHHHHHhcCCcccccchhhHHHHHhhhhhhhhH
Confidence            47889999999999999999999999999999999999999999999999988889999999999999999988899999


Q ss_pred             HHHHHHHHhhhhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCC
Q 005848           81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGG  160 (674)
Q Consensus        81 ~~~l~l~~d~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G  160 (674)
                      .+++++++|++++|.+.++...|.+++|+.++.+++...++|++|++||++..++|..++.+.+.+.+|++|||+++++|
T Consensus       116 ~~~l~v~ld~v~~P~~~~~~~~~~~e~~~~~~~~~~~~~~ek~vV~~E~~~~~~~p~~~~~~~~~~~lf~~~py~~~~~G  195 (257)
T d2fgea4         116 YNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGG  195 (257)
T ss_dssp             HHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTC
T ss_pred             HHhHHHHHHHHhCcchHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcccccccCCCccc
Confidence            99999999999999999988789999999999888888999999999999999999999999999999999999999999


Q ss_pred             CcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccc
Q 005848          161 DPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF  213 (674)
Q Consensus       161 ~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~  213 (674)
                      ++++|+++|.++|++||++||+|+||+|+++||+|+++++++|+ ..|+.++.
T Consensus       196 ~~e~I~~it~~~l~~f~~~~Y~p~N~~l~v~G~i~~~~~~~~i~-k~f~~~~~  247 (257)
T d2fgea4         196 DPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLS-EYLDMFEA  247 (257)
T ss_dssp             CTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHH-HHHTTCCC
T ss_pred             hhhhhhhhhHHHHHHHHHHhCCcccEEEEEEeCCCHHHHHHHHH-HHHhcCCC
Confidence            99999999999999999999999999999999999999999995 77776643

PyMOL of d2fgea4

>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure