Citrus Sinensis ID: 005856
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 673 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUU3 | 757 | Pentatricopeptide repeat- | yes | no | 0.962 | 0.856 | 0.736 | 0.0 | |
| O81908 | 710 | Pentatricopeptide repeat- | no | no | 0.895 | 0.849 | 0.329 | 4e-97 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.906 | 0.799 | 0.247 | 5e-50 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.839 | 0.617 | 0.237 | 2e-49 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.750 | 0.801 | 0.250 | 2e-48 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.918 | 0.847 | 0.238 | 6e-48 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.742 | 0.551 | 0.25 | 5e-47 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.711 | 0.761 | 0.258 | 7e-47 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.683 | 0.727 | 0.254 | 1e-46 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.638 | 0.667 | 0.268 | 2e-46 |
| >sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/650 (73%), Positives = 564/650 (86%), Gaps = 2/650 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 95 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 154
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 155 KMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 214
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY++LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFFEDMK+RGIS D T+NTMING+ RFKKMDEAEKLF EMK I P+V+SYTTMIKG
Sbjct: 275 LRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKG 334
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y+AV+R DD LRIF+EM+S ++PNA TY+ LLPGLCDAGKMVE + +L+ M+ ++I PK
Sbjct: 335 YLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 395 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 454
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 455 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 514
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPDS++EI+KIM RRGVPR+++AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 515 IRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGH 574
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P SSLFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 575 VPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 634
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD ++ +SY+KVLDALL
Sbjct: 635 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFSSYDKVLDALLG 694
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+
Sbjct: 695 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 203/616 (32%), Positives = 338/616 (54%), Gaps = 13/616 (2%)
Query: 39 ALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG---VQWDEDMFE 95
L+FF WV G F+H ++ M+E LGR LN AR L + ++ V+ + F
Sbjct: 84 GLRFFDWVSNKG-FSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFN 142
Query: 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML-S 154
LI SYG G+ QESVK+F MKQ+G+ SV ++++L ++L+RGR MA F++M +
Sbjct: 143 SLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRT 202
Query: 155 EGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214
G+ P +T+N ++ GF + ++ A R F+DM+ + DVVTYNT+I+G R K+
Sbjct: 203 YGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKI 262
Query: 215 AEKLFAEM--KEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
A + + M K ++ P V+SYTT+++GY + D+A+ +F +M S +KPNAVTY L
Sbjct: 263 AHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTL 322
Query: 273 LPGLCDAGKMVEVQKVL---REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI 329
+ GL +A + E++ +L + + P D F L+ C +GHL+AA V + M+
Sbjct: 323 IKGLSEAHRYDEIKDILIGGNDAFTTFAP--DACTFNILIKAHCDAGHLDAAMKVFQEML 380
Query: 330 RLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQH 389
+ + ++ Y +LI C +DRA L ++L EKE++L + A++YNPM ++
Sbjct: 381 NMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPL-AAAYNPMFEY 439
Query: 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449
LC NG+T +AE FRQLMK+GV DP ++ LI GH +EG A+E++ +M RR D
Sbjct: 440 LCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDL 499
Query: 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509
+ Y LI+ L+ GE A L M+ + P ++ F SV+ L + + ++
Sbjct: 500 ETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTL 559
Query: 510 MVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIA 569
M+EK +++N+DL +++ L E+A + L+ +G + + LL L E K +
Sbjct: 560 MLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYDNGYLVKMEELLGYLCENRKLLD 619
Query: 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIA 629
A L+ FCL + ++D+ + V++ L + A+S+ +++E G L
Sbjct: 620 AHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRN 679
Query: 630 GLNQEGNTKQADILSR 645
L G ++ +S+
Sbjct: 680 ALEAAGKWEELQFVSK 695
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 174/704 (24%), Positives = 301/704 (42%), Gaps = 94/704 (13%)
Query: 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85
V V+ K+ AL+ F + + F H T+ +IE LG GK +L+DM +
Sbjct: 10 VTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMREN 69
Query: 86 -GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMM 144
G E ++ +++YG+KG VQE+V +F+ M E +V SY+A+ +++ G +
Sbjct: 70 VGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQ 129
Query: 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204
A + + +M GI P +++ + + F + + A+R +M S+G ++VV Y T++
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189
Query: 205 ----------GYNRFKKM-------------------------DEAEKLFAEMKEKNIEP 229
GY F KM E EKL ++ ++ + P
Sbjct: 190 GFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLP 249
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289
+ +Y I+G D A+R+ + KP+ +TY L+ GLC K E + L
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYL 309
Query: 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK 349
+MV + P D+ + L+ CK G + A ++ + + Y LI+ C
Sbjct: 310 GKMVNEGLEP-DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCH 368
Query: 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409
+RA+ L ++ + K I +P L YN +I+ L + G +A ++ +K
Sbjct: 369 EGETNRALALFNEALGKGI--KPNVIL------YNTLIKGLSNQGMILEAAQLANEMSEK 420
Query: 410 GVLDPV-AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468
G++ V FN L+ G K G A +VK+M +G D + LI Y + + +A
Sbjct: 421 GLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENA 480
Query: 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528
LD M+++G P + S++ L + + + K+MVEKG NL +LE+
Sbjct: 481 LEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLES 540
Query: 529 LLMRGHVEEALGRIDLMMQ---------------------------------------SG 549
L ++EALG ++ M S
Sbjct: 541 LCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSS 600
Query: 550 SVPNFDSLLSVLSEKGKTIAAVKL----LDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605
S P ++ ++ +EK A KL +D CLG D +Y ++D G
Sbjct: 601 STPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY----TYRLMVDGFCKTGNVNLG 656
Query: 606 YSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQ-ADILSRMIR 648
Y L ++ME G + + ++I L E + A I+ RM++
Sbjct: 657 YKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 151/636 (23%), Positives = 289/636 (45%), Gaps = 71/636 (11%)
Query: 39 ALQFFRWVERAGLFNHDRETHLKMIEIL---GRVGKLNHARCIL-------------LDM 82
AL F W+ + + H ++ ++ +L G VG + R ++ LD+
Sbjct: 106 ALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDL 165
Query: 83 PKKGVQWDE----------DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132
+K + DE + L+ S + G+V E +++ M + V ++ +Y+ +
Sbjct: 166 CRK-MNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224
Query: 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI 192
+ G A +Y +K++ G++P TY ++ G+ L++A + F +M +G
Sbjct: 225 VNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGC 284
Query: 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252
+ V Y +I+G +++DEA LF +MK+ PTV +YT +IK ER +AL
Sbjct: 285 RRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALN 344
Query: 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312
+ EM+ +KPN TYT L+ LC K + +++L +M+E+ + P + + L+
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALINGY 403
Query: 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372
CK G + A DV++ M + Y LI+ +CK+ ++ +A+ +L+K++E++++
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVL--- 459
Query: 373 QSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPD 431
+ +YN +I C +G A + +G++ D + ++I K +
Sbjct: 460 -----PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVE 514
Query: 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491
A ++ + ++GV + Y LI+ Y + G+ +A L+ M+ P S F +++
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574
Query: 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551
L DG+++ A+ + + MV+ G++ + ++ LL G + A R M+ SG+
Sbjct: 575 HGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK 634
Query: 552 PNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611
P D +Y + G+ L+A ++ K
Sbjct: 635 P--------------------------------DAHTYTTFIQTYCREGRLLDAEDMMAK 662
Query: 612 IMEKGGVTDWKSSDKLIAGLNQEGNTKQA-DILSRM 646
+ E G D + LI G G T A D+L RM
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/518 (25%), Positives = 247/518 (47%), Gaps = 13/518 (2%)
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K++ + ++ K + + M G+ + + +LI + ++ + ++ + M +L
Sbjct: 86 KLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKL 145
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
G E ++ + +L R A ++M G +P T+N ++ G FL K A
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+ + M ++G D+VTY ++NG + D A L +M++ +EP V+ Y T+I G
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
+ DDAL +F EM++ ++PN VTY++L+ LC+ G+ + ++L +M+ER I P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP- 324
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
D F L+ K G L A + M++ SI Y LI FC + D A ++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNN 419
+ +V K P + +YN +I+ C + + FR++ ++G++ + V +N
Sbjct: 385 EFMVSKHCF--P------DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479
LI+G + G+ D A EI K M GVP + Y L++ + G+ A + +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539
P + ++E + + G+V+ + ++ KGVK ++ ++ +G EEA
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 540 GRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLL 574
M + G++PN +++L+ G A+ +L+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 157/658 (23%), Positives = 299/658 (45%), Gaps = 40/658 (6%)
Query: 11 QNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGL----FNHDRETHLKMIEIL 66
N +R + + + V VL+ +N Q R+V++ G F H + MI IL
Sbjct: 66 NNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQ--RFVDQLGFHFPNFKHTSLSLSAMIHIL 123
Query: 67 GRVGKLNHARCILLDMPKK-GVQ----------------WDEDMFEVLIESYGKKGIVQE 109
R G+L+ A+ LL M ++ GV ++ +F++LI +Y + ++E
Sbjct: 124 VRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLRE 183
Query: 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169
+ + F +++ G S+ + +AL ++R G +A + ++ G+ +T N+M+
Sbjct: 184 AHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVN 243
Query: 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP 229
K+E F ++ +G+ D+VTYNT+I+ Y+ M+EA +L M K P
Sbjct: 244 ALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSP 303
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289
V +Y T+I G + + A +F EM + P++ TY +LL C G +VE +KV
Sbjct: 304 GVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVF 363
Query: 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK 349
+M R + P D F ++ + +SG+L+ A ++ + + Y ILI+ +C+
Sbjct: 364 SDMRSRDVVP-DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCR 422
Query: 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409
M A+ L ++++ Q M+ +YN ++ LC G+A+ F ++ ++
Sbjct: 423 KGMISVAMNLRNEML--------QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474
Query: 410 GVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468
+ D LI GH K GN +A E+ + M + + D Y L++ + + G+ A
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528
K M+ P + ++ +L G + A RV M+ K +K + + +++
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Query: 529 LLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVL------SEKGKTIAAVKLLDFCLGRDC 582
G+ + ++ M+ G VP+ S +++ K VK ++ G
Sbjct: 595 YCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQG-GL 653
Query: 583 IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640
+ D+ +Y +L + A +L K++E+G D + +I G + N +A
Sbjct: 654 VPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 137/548 (25%), Positives = 252/548 (45%), Gaps = 48/548 (8%)
Query: 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156
L+E K+G ++E++ + + GV ++ Y+AL + + ++ A+ F++M G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397
Query: 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216
+ P TY++++ F KL+TA+ F +M G+ L V YN++ING+ +F + AE
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL 276
AEM K +EPTV++YT+++ GY + + + ALR++ EM + P+ T+T LL GL
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517
Query: 277 CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE 336
AG + + K+ EM E + P R++
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPN-----------------------------RVT---- 544
Query: 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396
Y ++IE +C+ +A + L ++ EK I+ P + SY P+I LC GQ
Sbjct: 545 ---YNVMIEGYCEEGDMSKAFEFLKEMTEKGIV--P------DTYSYRPLIHGLCLTGQA 593
Query: 397 GKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICL 455
+A++F L K L+ + + L+ G +EG + A + + M +RGV D Y L
Sbjct: 594 SEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVL 653
Query: 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515
I+ L+ + L M + G P ++ S++++ + G + A + M+ +G
Sbjct: 654 IDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC 713
Query: 516 KENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVK 572
N ++ L G V EA M SVPN + L +L++ +
Sbjct: 714 VPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAV 773
Query: 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN 632
L + + + + A+Y ++ G+ A ++ +++ G D + +I L
Sbjct: 774 ELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELC 833
Query: 633 QEGNTKQA 640
+ + K+A
Sbjct: 834 RRNDVKKA 841
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 127/492 (25%), Positives = 235/492 (47%), Gaps = 13/492 (2%)
Query: 87 VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146
+ +D + +LI + ++ + ++ + M +LG E + + +L R A
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170
Query: 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGY 206
++M +P T+N ++ G FL K A+ + M +RG D+ TY T++NG
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Query: 207 NRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266
+ +D A L +M++ IE V+ YTT+I + +DAL +F EM + ++PN
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290
Query: 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLK 326
VTY +L+ LC+ G+ + ++L +M+ER I P + F L+ K G L A +
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINP-NVVTFSALIDAFVKEGKLVEAEKLYD 349
Query: 327 AMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM 386
MI+ SI + Y LI FC + D A + + ++ K+ P +YN +
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF--PNVV------TYNTL 401
Query: 387 IQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445
I+ C + + FR++ ++G++ + V +N LI+G + G+ D A +I K M GV
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 446 PRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505
P D Y L++ + G+ A + + + P + ++E + + G+V+
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521
Query: 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLS 562
+ S+ KGVK N+ + ++ +G EEA M + G++PN +++L+
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581
Query: 563 EKGKTIAAVKLL 574
G A+ +L+
Sbjct: 582 RDGDKAASAELI 593
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 227/491 (46%), Gaps = 31/491 (6%)
Query: 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112
+HD T+ I R +L+ A +L M K G + D L+ Y + ++V
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174
Query: 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172
+ D M ++G + ++ L + + A ++M+ G +P TY ++ G
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Query: 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232
++ A+ + M+ I DVV YNT+I+G ++K MD+A LF EM K I P V
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294
Query: 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292
+Y+++I R DA R+ +M + PN VT++AL+ GK+VE +K+ EM
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354
Query: 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEM 352
++R I P D + L+ C L+ A + + MI Y LI+ FCKA+
Sbjct: 355 IKRSIDP-DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 353 YDRAIKLLDKLVEK-------------------------EIILRPQSTLDMEAS--SYNP 385
+ ++L ++ ++ +++ + ++ + + +YN
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473
Query: 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDP--VAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443
++ LC NG+ KA + F L ++ ++P +N +I G K G + +E+ + +
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYL-QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTA 503
GV + AY +I + RKG +A + L M EDG P S + +++ + DG + +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 504 SRVMKSMVEKG 514
+ ++K M G
Sbjct: 593 AELIKEMRSCG 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 217/443 (48%), Gaps = 13/443 (2%)
Query: 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDM 82
+ LV + K S+ + R VE F + T+ ++ ++ + G+ A +L M
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETG--FQPNEVTYGPVLNVMCKSGQTALAMELLRKM 254
Query: 83 PKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRY 142
++ ++ D + ++I+ K G + + +F+ M+ G + + +Y+ L GR+
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314
Query: 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTM 202
+ M+ I P T++V++ F KL A + ++M RGI+ + +TYN++
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374
Query: 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262
I+G+ + +++EA ++ M K +P ++++ +I GY R DD L +F EM V
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322
N VTY L+ G C +GK+ +K+ +EMV R + P D + LL C +G L A
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP-DIVSYKILLDGLCDNGELEKAL 493
Query: 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382
++ + + + + G Y I+I C A D A L L P + ++A +
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSL--------PLKGVKLDARA 545
Query: 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441
YN MI LC KA+I FR++ ++G D + +N LIR H + + +A E+++ M
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605
Query: 442 RRGVPRDADAYICLIESYLRKGE 464
G P D + + ++ + L GE
Sbjct: 606 SSGFPADV-STVKMVINMLSSGE 627
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 673 | ||||||
| 255580313 | 753 | pentatricopeptide repeat-containing prot | 0.982 | 0.877 | 0.787 | 0.0 | |
| 225440005 | 763 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.866 | 0.776 | 0.0 | |
| 297741611 | 772 | unnamed protein product [Vitis vinifera] | 0.982 | 0.856 | 0.776 | 0.0 | |
| 449507993 | 760 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.976 | 0.864 | 0.776 | 0.0 | |
| 449464322 | 760 | PREDICTED: pentatricopeptide repeat-cont | 0.976 | 0.864 | 0.776 | 0.0 | |
| 224111048 | 760 | predicted protein [Populus trichocarpa] | 0.983 | 0.871 | 0.763 | 0.0 | |
| 297827231 | 756 | pentatricopeptide repeat-containing prot | 0.962 | 0.857 | 0.736 | 0.0 | |
| 15228104 | 757 | pentatricopeptide repeat-containing prot | 0.962 | 0.856 | 0.736 | 0.0 | |
| 356512321 | 733 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.903 | 0.729 | 0.0 | |
| 356528212 | 738 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.879 | 0.736 | 0.0 |
| >gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1086 bits (2809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/662 (78%), Positives = 586/662 (88%), Gaps = 1/662 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IR LVP FDH+LVYNVLH A+NSEHALQFFRWVERAGLF +DR+TH+
Sbjct: 87 MANRPWTTRLQNSIRNLVPHFDHSLVYNVLHAARNSEHALQFFRWVERAGLFKNDRDTHM 146
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMPKKGV+WDE MF VLIESYGK GIVQE+VKIF+ M +L
Sbjct: 147 KIIEILGRASKLNHARCILLDMPKKGVEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNEL 206
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVERS+KSYDALFK+ILRRGRYMMAKR FNKML++GI+PTRHTYN+MLWGFFLSL+LETA
Sbjct: 207 GVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLETA 266
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RF++DMK+RGIS DVVTYNTMING+ RFKKM+EAEKLF EMK KNI PTVISYTTMIKG
Sbjct: 267 MRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKG 326
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YVAV+R DD LR+ +EMKSF++KPN TY+ LLPGLCDA KM E + +L EMV R++ PK
Sbjct: 327 YVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPK 386
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F++LL QCK+G L AA DVL M+RL IPTEAGHYG+LIENFCKAE YDRA+K L
Sbjct: 387 DNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGHYGVLIENFCKAEEYDRAVKYL 446
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
DKL+EKEIILRPQSTL++E+++YNPMIQ+LC +GQTGKAEIFFRQLMKKGV DP+AFNNL
Sbjct: 447 DKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMKKGVQDPLAFNNL 506
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
I GH+KEG PDSAFEI KIMG+RGVPRDADAY +IESYLRKGEPADAKTALD M+EDGH
Sbjct: 507 ICGHAKEGYPDSAFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADAKTALDGMLEDGH 566
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
P S+FRSVMESLFEDGRVQTASRVMKSMVEKGVKEN+DLV KILEALLMRGHVEEALG
Sbjct: 567 VPDPSVFRSVMESLFEDGRVQTASRVMKSMVEKGVKENMDLVGKILEALLMRGHVEEALG 626
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RI+L+MQSG NFD LLSVLSEKGKTIAA+KLLDF L RD +D SY+KVLDALLAAG
Sbjct: 627 RIELLMQSGFHVNFDDLLSVLSEKGKTIAALKLLDFALERDFNLDFKSYDKVLDALLAAG 686
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR-GEMSRGSQKEK 659
KTLNAYSIL KIM+KGGV+DW SS LI LNQEGNTKQADILSRMI+ GE S ++K K
Sbjct: 687 KTLNAYSILCKIMQKGGVSDWSSSKDLIKSLNQEGNTKQADILSRMIKGGEKSHENKKGK 746
Query: 660 KQ 661
KQ
Sbjct: 747 KQ 748
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/662 (77%), Positives = 586/662 (88%), Gaps = 1/662 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA RAWTTRLQN IR+LVPQFDH+LV+NVLHG++NS+HALQFFRWVERAGLF HDR+THL
Sbjct: 97 MANRAWTTRLQNSIRSLVPQFDHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHL 156
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMPKKGV+WDED+F +LI+SYGK GIVQESVK+F MK+L
Sbjct: 157 KIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKEL 216
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSYDALFK+ILRRGRYMMAKRYFN ML+EG+ PT HTYN+M+WGFFLSLK+ETA
Sbjct: 217 GVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETA 276
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RFFE+MK R IS DVVTYNTMINGY R KKM+EAEK F EMK +NIEPTVISYTTMIKG
Sbjct: 277 NRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKG 336
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V R DD LR+F+EMKSF +KPNAVTY+ LLPGLCD KM+E Q V++EMVERYI PK
Sbjct: 337 YVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPK 396
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+L+ QCK+G L+AAADVLKAMIRLSIPTEAGHYG+LIENFCK+ +YDRA+KLL
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
DKL+EKEIILRPQ++L+ME+S YN +I++LC++GQT KAE FRQLMKKGV DP+AFNNL
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNL 516
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGHSKEG P+SAFEI+KIMGRR VPR+ADAY LIES+L+KGEPADAKTALD MIE+GH
Sbjct: 517 IRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGH 576
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
P SSLFRSVMESLFEDGR+QTASRVM +MVEKGVKEN+DLVAKILEALL+RGHVEEALG
Sbjct: 577 IPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALG 636
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RIDL+M +G P+FD LLSVL KGKTIAA+KLLDF L RD I +SYE VLDALL AG
Sbjct: 637 RIDLLMNNGCEPDFDGLLSVLCAKGKTIAALKLLDFGLERDYNISFSSYENVLDALLTAG 696
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMS-RGSQKEK 659
KTLNAYSIL KIM+KGG TDW S LI LN+EGNTKQADILSRMI+GE GS+K K
Sbjct: 697 KTLNAYSILCKIMQKGGATDWSSCKDLIRSLNEEGNTKQADILSRMIKGEEKVHGSKKGK 756
Query: 660 KQ 661
KQ
Sbjct: 757 KQ 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/662 (77%), Positives = 586/662 (88%), Gaps = 1/662 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA RAWTTRLQN IR+LVPQFDH+LV+NVLHG++NS+HALQFFRWVERAGLF HDR+THL
Sbjct: 97 MANRAWTTRLQNSIRSLVPQFDHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHL 156
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMPKKGV+WDED+F +LI+SYGK GIVQESVK+F MK+L
Sbjct: 157 KIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKEL 216
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSYDALFK+ILRRGRYMMAKRYFN ML+EG+ PT HTYN+M+WGFFLSLK+ETA
Sbjct: 217 GVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETA 276
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RFFE+MK R IS DVVTYNTMINGY R KKM+EAEK F EMK +NIEPTVISYTTMIKG
Sbjct: 277 NRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKG 336
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V R DD LR+F+EMKSF +KPNAVTY+ LLPGLCD KM+E Q V++EMVERYI PK
Sbjct: 337 YVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPK 396
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+L+ QCK+G L+AAADVLKAMIRLSIPTEAGHYG+LIENFCK+ +YDRA+KLL
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
DKL+EKEIILRPQ++L+ME+S YN +I++LC++GQT KAE FRQLMKKGV DP+AFNNL
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNL 516
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGHSKEG P+SAFEI+KIMGRR VPR+ADAY LIES+L+KGEPADAKTALD MIE+GH
Sbjct: 517 IRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGH 576
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
P SSLFRSVMESLFEDGR+QTASRVM +MVEKGVKEN+DLVAKILEALL+RGHVEEALG
Sbjct: 577 IPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALG 636
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RIDL+M +G P+FD LLSVL KGKTIAA+KLLDF L RD I +SYE VLDALL AG
Sbjct: 637 RIDLLMNNGCEPDFDGLLSVLCAKGKTIAALKLLDFGLERDYNISFSSYENVLDALLTAG 696
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMS-RGSQKEK 659
KTLNAYSIL KIM+KGG TDW S LI LN+EGNTKQADILSRMI+GE GS+K K
Sbjct: 697 KTLNAYSILCKIMQKGGATDWSSCKDLIRSLNEEGNTKQADILSRMIKGEEKVHGSKKGK 756
Query: 660 KQ 661
KQ
Sbjct: 757 KQ 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g37230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/657 (77%), Positives = 569/657 (86%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IR+LVPQFDHNLVYNVLH AK SEHAL FFRWVERAGLF HDRETH
Sbjct: 99 MANREWTTRLQNSIRSLVPQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHF 158
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMP KGVQWDED+F VLIESYGK GIVQE+VKIF MK+L
Sbjct: 159 KIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKEL 218
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVERSVKSYDALFK I+RRGRYMMAKRYFN ML+EGIEP RHTYNVMLWGFFLSL+LETA
Sbjct: 219 GVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETA 278
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RF+EDMKSRGIS DVVTYNTMINGY RFK M+EAE+ F EMK KNI PTVISYTTMIKG
Sbjct: 279 KRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKG 338
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V RADDALR+F+EMK+ KPN +TY+ LLPGLCDA K+ E +K+L EMV R+ PK
Sbjct: 339 YVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPK 398
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+LL QCK G L+AA VLKAMIRLSIPTEAGHYGILIEN CKA MYD+A+KLL
Sbjct: 399 DNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLL 458
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
+ LVEKEIILRPQSTL+MEAS+YN +IQ+LC++GQTGKA+ FFRQL+KKG+ D VAFNNL
Sbjct: 459 ENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNL 518
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPD AFE++KIMGRRGV RDA++Y LI+SYL KGEPADAKTALDSMIE+GH
Sbjct: 519 IRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGH 578
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
SP S+LFRSVMESLF DGRVQTASRVM SM++KG+ ENLDLVAKILEAL MRGH EEALG
Sbjct: 579 SPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALG 638
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RI+L+M P+F+SLLSVL EKGKT +A KLLDF L R+C I+ +SYEKVLDALL AG
Sbjct: 639 RINLLMNCNCPPDFNSLLSVLCEKGKTTSAFKLLDFGLERECNIEFSSYEKVLDALLGAG 698
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657
KTLNAY+IL KIMEKGG DW S D LI LNQEGNTKQADILSRMI+G + S+K
Sbjct: 699 KTLNAYAILCKIMEKGGAKDWSSCDDLIKSLNQEGNTKQADILSRMIKGGDRKRSKK 755
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/657 (77%), Positives = 569/657 (86%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IR+LVPQFDHNLVYNVLH AK SEHAL FFRWVERAGLF HDRETH
Sbjct: 99 MANREWTTRLQNSIRSLVPQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHF 158
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMP KGVQWDED+F VLIESYGK GIVQE+VKIF MK+L
Sbjct: 159 KIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKEL 218
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVERSVKSYDALFK I+RRGRYMMAKRYFN ML+EGIEP RHTYNVMLWGFFLSL+LETA
Sbjct: 219 GVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETA 278
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RF+EDMKSRGIS DVVTYNTMINGY RFK M+EAE+ F EMK KNI PTVISYTTMIKG
Sbjct: 279 KRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKG 338
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V RADDALR+F+EMK+ KPN +TY+ LLPGLCDA K+ E +K+L EMV R+ PK
Sbjct: 339 YVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPK 398
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+LL QCK G L+AA VLKAMIRLSIPTEAGHYGILIEN CKA MYD+A+KLL
Sbjct: 399 DNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLL 458
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
+ LVEKEIILRPQSTL+MEAS+YN +IQ+LC++GQTGKA+ FFRQL+KKG+ D VAFNNL
Sbjct: 459 ENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNL 518
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPD AFE++KIMGRRGV RDA++Y LI+SYL KGEPADAKTALDSMIE+GH
Sbjct: 519 IRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGH 578
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
SP S+LFRSVMESLF DGRVQTASRVM SM++KG+ ENLDLVAKILEAL MRGH EEALG
Sbjct: 579 SPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALG 638
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RI+L+M P+F+SLLSVL EKGKT +A KLLDF L R+C I+ +SYEKVLDALL AG
Sbjct: 639 RINLLMNCNCPPDFNSLLSVLCEKGKTTSAFKLLDFGLERECNIEFSSYEKVLDALLGAG 698
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657
KTLNAY+IL KIMEKGG DW S D LI LNQEGNTKQADILSRMI+G + S+K
Sbjct: 699 KTLNAYAILCKIMEKGGAKDWSSCDDLIKSLNQEGNTKQADILSRMIKGGDRKRSKK 755
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa] gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/663 (76%), Positives = 578/663 (87%), Gaps = 1/663 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IRALVP+FDH+LVYNVLHGA+ +HALQFFRWVERAGL HDRETH+
Sbjct: 93 MANRDWTTRLQNSIRALVPEFDHSLVYNVLHGARKPDHALQFFRWVERAGLIQHDRETHM 152
Query: 61 KMIEILGRVGKLNHARCILL-DMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119
K+I+ILGR LNHARCI+L DMPKKG + DEDMF +LI+SYGK GIVQESVK+F MK+
Sbjct: 153 KIIQILGRYSMLNHARCIVLEDMPKKGFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKE 212
Query: 120 LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179
LGVERSVKSY+ALFK+I+R+GRYMMAKR+FNKML EGI PTRHTYNV++WGFFLS++L T
Sbjct: 213 LGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLRT 272
Query: 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIK 239
A+RF+EDMK RGIS DVVTYNTMINGY R K+M+EAEKLFAEMK K+I PTVISYTTMIK
Sbjct: 273 AVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIK 332
Query: 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPP 299
GY AV+R +D LR+ +EMKS +KPN VTYT LLP LCDAGKM E + +L+EMV R I P
Sbjct: 333 GYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAP 392
Query: 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKL 359
KDNS+F+KLL QCK+G L AA DVL MI+LSIP+EAGHYG+LIENFCKAE YD+A+K
Sbjct: 393 KDNSIFLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIENFCKAEEYDQAVKF 452
Query: 360 LDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNN 419
+DKL+E +IILRPQSTL+ME+ +YNP+IQ+LC +GQTGKAEI FRQL+KKGV DP+AFNN
Sbjct: 453 VDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTGKAEILFRQLLKKGVEDPLAFNN 512
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479
LI GH+KEG PDSAFEI+KIMGR+G+PRDADAY LIESYLRKGEPADAKTALDSMIEDG
Sbjct: 513 LICGHAKEGTPDSAFEILKIMGRKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIEDG 572
Query: 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539
H P SS+FRSVMESL+EDGRVQTASRVMKSMVEKGVKEN+DLVAKILEALLMRGH EEAL
Sbjct: 573 HLPDSSVFRSVMESLYEDGRVQTASRVMKSMVEKGVKENMDLVAKILEALLMRGHEEEAL 632
Query: 540 GRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599
GRIDL+M S NFDSLLS+LSEKGKTIAA+KLLDF L RDC ID SY+KVLDALLAA
Sbjct: 633 GRIDLLMSSQCNVNFDSLLSILSEKGKTIAALKLLDFGLQRDCDIDFKSYDKVLDALLAA 692
Query: 600 GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQKEK 659
GKTLNAYSIL KIMEKGGVT W+S + LI LNQEGNTKQADILSRMI+G+ K+
Sbjct: 693 GKTLNAYSILCKIMEKGGVTSWRSYEDLIKSLNQEGNTKQADILSRMIKGDDKSHENKKG 752
Query: 660 KQR 662
K++
Sbjct: 753 KKK 755
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/650 (73%), Positives = 565/650 (86%), Gaps = 2/650 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 94 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 153
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 154 KMIKMLGEVQKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 213
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY+ LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 214 GVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 273
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFF+DMK+RGIS D VTYNT+INGY RFKKMDEAEKLF EMK N EP+V++YTTMIKG
Sbjct: 274 LRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIKG 333
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y++V+R DD LRIF+EM+SF ++PNA TY+ LLPGLCD GKMVE + +L+ M+ ++I PK
Sbjct: 334 YLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMAKHIAPK 393
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 394 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 453
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 454 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 513
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNP+S++EI+KIM RRGVPR+A+AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 514 IRGHAKEGNPESSYEILKIMSRRGVPREANAYELLIKSYMSKGEPGDAKTALDSMVEDGH 573
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P S+LFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 574 VPDSALFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 633
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD +D +SY+KVLDALL
Sbjct: 634 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLDFSSYDKVLDALLG 693
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+
Sbjct: 694 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK 743
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230 gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana] gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana] gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana] gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/650 (73%), Positives = 564/650 (86%), Gaps = 2/650 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 95 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 154
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 155 KMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 214
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY++LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFFEDMK+RGIS D T+NTMING+ RFKKMDEAEKLF EMK I P+V+SYTTMIKG
Sbjct: 275 LRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKG 334
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y+AV+R DD LRIF+EM+S ++PNA TY+ LLPGLCDAGKMVE + +L+ M+ ++I PK
Sbjct: 335 YLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 395 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 454
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 455 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 514
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPDS++EI+KIM RRGVPR+++AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 515 IRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGH 574
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P SSLFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 575 VPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 634
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD ++ +SY+KVLDALL
Sbjct: 635 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFSSYDKVLDALLG 694
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+
Sbjct: 695 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK 744
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/665 (72%), Positives = 567/665 (85%), Gaps = 3/665 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M+ RAWTTRLQN IR+LVP+FD +LVYNVLHGA + EHALQF+RWVERAGLF H ET L
Sbjct: 64 MSNRAWTTRLQNSIRSLVPEFDPSLVYNVLHGAASPEHALQFYRWVERAGLFTHTPETTL 123
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQ---WDEDMFEVLIESYGKKGIVQESVKIFDIM 117
K+++ILGR KLNHARCIL + + GV ED F LI+SYG+ GIVQESVK+F M
Sbjct: 124 KIVQILGRYSKLNHARCILFNDTRGGVSRAAVTEDAFVSLIDSYGRAGIVQESVKLFKKM 183
Query: 118 KQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKL 177
K+LG++R+VKSYDALFK+ILRRGRYMMAKRY+N ML EG++PTRHT+N++LWG FLSL+L
Sbjct: 184 KELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAMLLEGVDPTRHTFNILLWGMFLSLRL 243
Query: 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237
+TA+RF+EDMKSRGI DVVTYNT+INGY RFKK+DEAEKLF EMK ++I P VIS+TTM
Sbjct: 244 DTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTM 303
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297
+KGYVA R DDAL++F+EMK VKPN VT++ LLPGLCDA KM E + VL EMVERYI
Sbjct: 304 LKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVERYI 363
Query: 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAI 357
PKDN++FMK++ QCK+G L+AAADVLKAM+RLSIPTEAGHYG+LIE+FCKA +YD+A
Sbjct: 364 APKDNALFMKMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGHYGVLIESFCKANVYDKAE 423
Query: 358 KLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAF 417
KLLDKL+EKEI+LRPQ+ +ME S+YN MI +LC +G+TGKAE FFRQL+KKGV D VAF
Sbjct: 424 KLLDKLIEKEIVLRPQNDSEMEPSAYNLMIGYLCEHGRTGKAETFFRQLLKKGVQDSVAF 483
Query: 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477
NNLIRGHSKEGNPDSAFEI+KIMGRRGV RD D+Y LIESYLRKGEPADAKTALD M+E
Sbjct: 484 NNLIRGHSKEGNPDSAFEIMKIMGRRGVARDVDSYRLLIESYLRKGEPADAKTALDGMLE 543
Query: 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537
GH P SSL+RSVMESLF+DGRVQTASRVMKSMVEKG KEN+DLV KILEALL+RGHVEE
Sbjct: 544 SGHLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGAKENMDLVLKILEALLLRGHVEE 603
Query: 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL 597
ALGRIDL+M +G P+FD LLSVL EK KTIAA+KLLDF L RDCIID + Y+KVLDALL
Sbjct: 604 ALGRIDLLMHNGCEPDFDHLLSVLCEKEKTIAALKLLDFVLERDCIIDFSIYDKVLDALL 663
Query: 598 AAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657
AAGKTLNAYSIL KI+EKGG TDW S D+LI LNQEGNTKQAD+LSRMI+G R ++
Sbjct: 664 AAGKTLNAYSILCKILEKGGSTDWSSRDELIKSLNQEGNTKQADVLSRMIKGTDGRTLRR 723
Query: 658 EKKQR 662
K++
Sbjct: 724 GGKRK 728
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/657 (73%), Positives = 560/657 (85%), Gaps = 8/657 (1%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M+ RAWTTRLQN IR+LVP+FD +LVYNVLHGA + EHALQF+RWVERAGLF H ET L
Sbjct: 64 MSNRAWTTRLQNSIRSLVPEFDPSLVYNVLHGAASPEHALQFYRWVERAGLFTHTPETTL 123
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQ---WDEDMFEVLIESYGKKGIVQESVKIFDIM 117
K+++ILGR KLNHARCIL D + G ED F LI+SYG+ GIVQESVK+F M
Sbjct: 124 KIVQILGRYSKLNHARCILFDDTRGGASRATVTEDAFVSLIDSYGRAGIVQESVKLFKKM 183
Query: 118 KQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKL 177
K+LGV+R+VKSYDALFK+ILRRGRYMMAKRY+N ML+E +EPTRHTYN++LWG FLSL+L
Sbjct: 184 KELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAMLNESVEPTRHTYNILLWGMFLSLRL 243
Query: 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237
+TA+RF+EDMKSRGI DVVTYNT+INGY RFKK++EAEKLF EMK ++I P VIS+TTM
Sbjct: 244 DTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTTM 303
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297
+KGYVA + DDAL++F+EMK VKPNAVT++ LLPGLCDA KM E + VL EMVERYI
Sbjct: 304 LKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVERYI 363
Query: 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAI 357
PKDN+VFMKL+ QCK+G L+AA DVLKAMIRLSIPTEAGHYG+LIENFCKA +YD+A
Sbjct: 364 APKDNAVFMKLMSCQCKAGDLDAAGDVLKAMIRLSIPTEAGHYGVLIENFCKANLYDKAE 423
Query: 358 KLLDKLVEKEIILRPQST-----LDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL 412
KLLDK++EKEI+LR ++ +ME S+YN MI +LC +G+TGKAE FFRQLMKKGV
Sbjct: 424 KLLDKMIEKEIVLRQKNAYETELFEMEPSAYNLMIGYLCEHGRTGKAETFFRQLMKKGVQ 483
Query: 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472
D V+FNNLI GHSKEGNPDSAFEI+KIMGRRGV RDAD+Y LIESYLRKGEPADAKTAL
Sbjct: 484 DSVSFNNLICGHSKEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTAL 543
Query: 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR 532
D M+E GH P SSL+RSVMESLF+DGRVQTASRVMKSMVEKGVKEN+DLV+K+LEALLMR
Sbjct: 544 DGMLESGHLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGVKENMDLVSKVLEALLMR 603
Query: 533 GHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592
GHVEEALGRI L+M +G P+FD LLSVL EK KTIAA+KLLDF L RDCIID + Y+KV
Sbjct: 604 GHVEEALGRIHLLMLNGCEPDFDHLLSVLCEKEKTIAALKLLDFVLERDCIIDFSIYDKV 663
Query: 593 LDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649
LDALLAAGKTLNAYSIL KI+EKGG TDW S D+LI LNQEGNTKQAD+LSRMI+G
Sbjct: 664 LDALLAAGKTLNAYSILCKILEKGGSTDWSSRDELIKSLNQEGNTKQADVLSRMIKG 720
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 673 | ||||||
| TAIR|locus:2049756 | 757 | AT2G37230 [Arabidopsis thalian | 0.974 | 0.866 | 0.728 | 6.7e-262 | |
| TAIR|locus:2205609 | 710 | AT1G02060 [Arabidopsis thalian | 0.945 | 0.895 | 0.322 | 1.9e-92 | |
| TAIR|locus:2009787 | 806 | AT1G30290 "AT1G30290" [Arabido | 0.958 | 0.800 | 0.230 | 4.8e-50 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.762 | 0.560 | 0.242 | 7.8e-49 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.854 | 0.753 | 0.237 | 1.9e-48 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.750 | 0.801 | 0.250 | 2.6e-47 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.794 | 0.850 | 0.248 | 1.4e-46 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.652 | 0.681 | 0.270 | 1.6e-45 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.904 | 0.807 | 0.247 | 6.1e-45 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.861 | 0.795 | 0.24 | 2.6e-44 |
| TAIR|locus:2049756 AT2G37230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2520 (892.1 bits), Expect = 6.7e-262, P = 6.7e-262
Identities = 481/660 (72%), Positives = 569/660 (86%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 95 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 154
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 155 KMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 214
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY++LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFFEDMK+RGIS D T+NTMING+ RFKKMDEAEKLF EMK I P+V+SYTTMIKG
Sbjct: 275 LRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKG 334
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y+AV+R DD LRIF+EM+S ++PNA TY+ LLPGLCDAGKMVE + +L+ M+ ++I PK
Sbjct: 335 YLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 395 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 454
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 455 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 514
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPDS++EI+KIM RRGVPR+++AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 515 IRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGH 574
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P SSLFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 575 VPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 634
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD ++ +SY+KVLDALL
Sbjct: 635 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFSSYDKVLDALLG 694
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQKE 658
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+ +G +K+
Sbjct: 695 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK--KGQGIKKQ 752
|
|
| TAIR|locus:2205609 AT1G02060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 210/651 (32%), Positives = 351/651 (53%)
Query: 6 WTTRLQNKIRALVPQ--FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMI 63
W+ L++ + +L P V L K L+FF WV G F+H ++ M+
Sbjct: 49 WSDELESSLSSLHPSQTISRTTVLQTLRLIKVPADGLRFFDWVSNKG-FSHKEQSFFLML 107
Query: 64 EILGRVGKLNHARCILLDMPKKG---VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
E LGR LN AR L + ++ V+ + F LI SYG G+ QESVK+F MKQ+
Sbjct: 108 EFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQM 167
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKML-SEGIEPTRHTYNVMLWGFFLSLKLET 179
G+ SV ++++L ++L+RGR MA F++M + G+ P +T+N ++ GF + ++
Sbjct: 168 GISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDE 227
Query: 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK--NIEPTVISYTTM 237
A R F+DM+ + DVVTYNT+I+G R K+ A + + M +K ++ P V+SYTT+
Sbjct: 228 AFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTL 287
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL---REMVE 294
++GY + D+A+ +F +M S +KPNAVTY L+ GL +A + E++ +L +
Sbjct: 288 VRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFT 347
Query: 295 RYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYD 354
+ P D F L+ C +GHL+AA V + M+ + + ++ Y +LI C +D
Sbjct: 348 TFAP--DACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFD 405
Query: 355 RAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP 414
RA L ++L EKE++L + A++YNPM ++LC NG+T +AE FRQLMK+GV DP
Sbjct: 406 RAETLFNELFEKEVLLGKDECKPL-AAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDP 464
Query: 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDS 474
++ LI GH +EG A+E++ +M RR D + Y LI+ L+ GE A L
Sbjct: 465 PSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQR 524
Query: 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534
M+ + P ++ F SV+ L + + ++ M+EK +++N+DL +++ L
Sbjct: 525 MLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQ 584
Query: 535 VEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594
E+A + L+ +G + + LL L E K + A L+ FCL + ++D+ + V++
Sbjct: 585 KEKAFLIVRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIE 644
Query: 595 ALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSR 645
L + A+S+ +++E G L L G ++ +S+
Sbjct: 645 GLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQFVSK 695
|
|
| TAIR|locus:2009787 AT1G30290 "AT1G30290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 4.8e-50, P = 4.8e-50
Identities = 152/660 (23%), Positives = 311/660 (47%)
Query: 5 AWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIE 64
+W + + ++R L+ + V VL + AL+FF W +R + HD + M+E
Sbjct: 156 SWNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLE 215
Query: 65 ILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVER 124
+L + +R +L+ M ++G+ + F ++ SY + G +++++K+ +M++ GVE
Sbjct: 216 VLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEP 275
Query: 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFF 184
++ + + +R R A R+ +M GI P TYN M+ G+ ++E AI
Sbjct: 276 NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELL 335
Query: 185 EDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM-KEKNIEPTVISYTTMIKGYVA 243
EDM S+G D V+Y T++ + K++ E L +M KE + P ++Y T+I
Sbjct: 336 EDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTK 395
Query: 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNS 303
+ AD+AL + + + + + Y+A++ LC G+M E + ++ EM+ + P D
Sbjct: 396 HDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVV 455
Query: 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363
+ ++ C+ G ++ A +L+ M Y L+ C+ A ++++
Sbjct: 456 TYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMN-- 513
Query: 364 VEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD-PVAFNNLIR 422
+ +E P S +Y+ ++ L G+ +A R+++ KG PV N L++
Sbjct: 514 MSEEHWWSPNSI------TYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQ 567
Query: 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSM-IEDGHS 481
++G A + ++ +G + + +I + + E A + LD M + + H+
Sbjct: 568 SLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHA 627
Query: 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541
+ + +++++L + GR+ A+ +MK M+ KG+ ++ G V++ +
Sbjct: 628 DVFT-YTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAI 686
Query: 542 IDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
++ M+ ++ ++ L GK A LL L D + +++ L G
Sbjct: 687 LEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKG 746
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQAD-ILSRMI-RGEMSRGSQKE 658
L+AY + ++ + + D K +KL L +G +AD ++ R++ RG +S S K+
Sbjct: 747 VPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQSLKQ 806
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 7.8e-49, P = 7.8e-49
Identities = 128/527 (24%), Positives = 261/527 (49%)
Query: 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153
+ L+ S + G+V E +++ M + V ++ +Y+ + + G A +Y +K++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 154 SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMD 213
G++P TY ++ G+ L++A + F +M +G + V Y +I+G +++D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 214 EAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALL 273
EA LF +MK+ PTV +YT +IK ER +AL + EM+ +KPN TYT L+
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI 333
LC K + +++L +M+E+ + P + + L+ CK G + A DV++ M +
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALINGYCKRGMIEDAVDVVELMESRKL 424
Query: 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393
Y LI+ +CK+ ++ +A+ +L+K++E++++ P + +YN +I C +
Sbjct: 425 SPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVL--P------DVVTYNSLIDGQCRS 475
Query: 394 GQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY 452
G A + +G++ D + ++I K + A ++ + ++GV + Y
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535
Query: 453 ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVE 512
LI+ Y + G+ +A L+ M+ P S F +++ L DG+++ A+ + + MV+
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595
Query: 513 KGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIA 569
G++ + ++ LL G + A R M+ SG+ P+ + + + +G+ +
Sbjct: 596 IGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD 655
Query: 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616
A ++ DL +Y ++ G+T A+ +L ++ + G
Sbjct: 656 AEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
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| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 1.9e-48, P = 1.9e-48
Identities = 141/594 (23%), Positives = 276/594 (46%)
Query: 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK-GV 87
V+ K+ AL+ F + + F H T+ +IE LG GK +L+DM + G
Sbjct: 13 VIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGN 72
Query: 88 QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147
E ++ +++YG+KG VQE+V +F+ M E +V SY+A+ +++ G + A +
Sbjct: 73 HMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHK 132
Query: 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYN 207
+ +M GI P +++ + + F + + A+R +M S+G ++VV Y T++ G+
Sbjct: 133 VYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFY 192
Query: 208 RFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD--DALRIFDEMKSFDVKPN 265
E +LF +M + + ++ +++ V ++ D + ++ D++ V PN
Sbjct: 193 EENFKAEGYELFGKMLASGVSLCLSTFNKLLR--VLCKKGDVKECEKLLDKVIKRGVLPN 250
Query: 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVL 325
TY + GLC G++ +++ ++E+ P D + L+ CK+ A L
Sbjct: 251 LFTYNLFIQGLCQRGELDGAVRMVGCLIEQG-PKPDVITYNNLIYGLCKNSKFQEAEVYL 309
Query: 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNP 385
M+ + ++ Y LI +CK M ++L +++V + + + +Y
Sbjct: 310 GKMVNEGLEPDSYTYNTLIAGYCKGGM----VQLAERIVGDAVF----NGFVPDQFTYRS 361
Query: 386 MIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444
+I LCH G+T +A F + + KG+ + + +N LI+G S +G A ++ M +G
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTAS 504
+ + + L+ + G +DA + MI G+ P F ++ +++ A
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481
Query: 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVL 561
++ M++ GV ++ +L L E+ + M++ G PN F+ LL L
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Query: 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615
K A+ LL+ + D ++ ++D G AY+ LF+ ME+
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYT-LFRKMEE 594
|
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 130/518 (25%), Positives = 247/518 (47%)
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K++ + ++ K + + M G+ + + +LI + ++ + ++ + M +L
Sbjct: 86 KLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKL 145
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
G E ++ + +L R A ++M G +P T+N ++ G FL K A
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+ + M ++G D+VTY ++NG + D A L +M++ +EP V+ Y T+I G
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
+ DDAL +F EM++ ++PN VTY++L+ LC+ G+ + ++L +M+ER I P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP- 324
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
D F L+ K G L A + M++ SI Y LI FC + D A ++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNN 419
+ +V K P + +YN +I+ C + + FR++ ++G++ + V +N
Sbjct: 385 EFMVSKHCF--P------DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479
LI+G + G+ D A EI K M GVP + Y L++ + G+ A + +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539
P + ++E + + G+V+ + ++ KGVK ++ ++ +G EEA
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 540 GRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLL 574
M + G++PN +++L+ G A+ +L+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 137/551 (24%), Positives = 259/551 (47%)
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K++ + ++ K + + M + +D + +LI + ++ + ++ + M +L
Sbjct: 85 KLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKL 144
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
G E + + +L R A ++M +P T+N ++ G FL K A
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+ + M +RG D+ TY T++NG + +D A L +M++ IE V+ YTT+I
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
+ +DAL +F EM + ++PN VTY +L+ LC+ G+ + ++L +M+ER I P
Sbjct: 265 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP- 323
Query: 301 DNSV-FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKL 359
N V F L+ K G L A + MI+ SI + Y LI FC + D A +
Sbjct: 324 -NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 360 LDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFN 418
+ ++ K+ P +YN +I+ C + + FR++ ++G++ + V +N
Sbjct: 383 FELMISKDCF--PNVV------TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 434
Query: 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED 478
LI+G + G+ D A +I K M GVP D Y L++ + G+ A + + +
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Query: 479 GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538
P + ++E + + G+V+ + S+ KGVK N+ + ++ +G EEA
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554
Query: 539 LGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595
M + G++PN +++L+ G A+ +L+ + D ++ V++
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN- 613
Query: 596 LLAAGKTLNAY 606
+L G+ +Y
Sbjct: 614 MLHDGRLEKSY 624
|
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 123/454 (27%), Positives = 222/454 (48%)
Query: 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDM 82
+ LV + K S+ + R VE F + T+ ++ ++ + G+ A +L M
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETG--FQPNEVTYGPVLNVMCKSGQTALAMELLRKM 254
Query: 83 PKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRY 142
++ ++ D + ++I+ K G + + +F+ M+ G + + +Y+ L GR+
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314
Query: 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTM 202
+ M+ I P T++V++ F KL A + ++M RGI+ + +TYN++
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374
Query: 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262
I+G+ + +++EA ++ M K +P ++++ +I GY R DD L +F EM V
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322
N VTY L+ G C +GK+ +K+ +EMV R + P D + LL C +G L A
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP-DIVSYKILLDGLCDNGELEKAL 493
Query: 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382
++ + + + + G Y I+I C A D A L L P + ++A +
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSL--------PLKGVKLDARA 545
Query: 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441
YN MI LC KA+I FR++ ++G D + +N LIR H + + +A E+++ M
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605
Query: 442 RRGVPRDADAYICLIESYLRKGEPADAKTALDSM 475
G P D + ++ + L GE D K+ LD +
Sbjct: 606 SSGFPADVST-VKMVINMLSSGE-LD-KSFLDML 636
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 6.1e-45, P = 6.1e-45
Identities = 155/627 (24%), Positives = 277/627 (44%)
Query: 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW 89
L + AL+ F + F+ + + +++ LGR G + + IL DM +
Sbjct: 57 LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116
Query: 90 DEDMFEVLIESYGKKGIVQESVKIFDIM-KQLGVERSVKSYDALFKLILRRGRYMMAKRY 148
F +LIESY + + E + + D M + G++ Y+ + L++ + +
Sbjct: 117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176
Query: 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR 208
KM GI+P T+NV++ + +L AI EDM S G+ D T+ T++ GY
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE 236
Query: 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD-VKPNAV 267
+D A ++ +M E + +S ++ G+ R +DAL EM + D P+
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296
Query: 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327
T+ L+ GLC AG + +++ M++ P D + ++ CK G + A +VL
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP-DVYTYNSVISGLCKLGEVKEAVEVLDQ 355
Query: 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387
MI Y LI CK + A +L L K I+ P + ++N +I
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL--P------DVCTFNSLI 407
Query: 388 QHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP 446
Q LC A F ++ KG D +N LI +G D A ++K M G
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRV 506
R Y LI+ + + + +A+ D M G S S + ++++ L + RV+ A+++
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527
Query: 507 MKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSE 563
M M+ +G K + +L G +++A + M +G P+ + +L+S L +
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Query: 564 KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKS 623
G+ A KLL + + +Y V+ L KT A ++ +++E+
Sbjct: 588 AGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAV 647
Query: 624 SDKLI-AGL-NQEGNTKQA-DILSRMI 647
S +++ GL N G ++A D L ++
Sbjct: 648 SYRIVFRGLCNGGGPIREAVDFLVELL 674
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| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 2.6e-44, P = 2.6e-44
Identities = 144/600 (24%), Positives = 277/600 (46%)
Query: 48 RAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107
R+G + + L+MI G V +L LD ++ +F++LI +Y + +
Sbjct: 125 RSGRLSDAQSCLLRMIRRSG-VSRLEIVNS--LDSTFSNCGSNDSVFDLLIRTYVQARKL 181
Query: 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167
+E+ + F +++ G S+ + +AL ++R G +A + ++ G+ +T N+M
Sbjct: 182 REAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIM 241
Query: 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNI 227
+ K+E F ++ +G+ D+VTYNT+I+ Y+ M+EA +L M K
Sbjct: 242 VNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGF 301
Query: 228 EPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQK 287
P V +Y T+I G + + A +F EM + P++ TY +LL C G +VE +K
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361
Query: 288 VLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347
V +M R + P D F ++ + +SG+L+ A ++ + + Y ILI+ +
Sbjct: 362 VFSDMRSRDVVP-DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420
Query: 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407
C+ M A+ L ++++ Q M+ +YN ++ LC G+A+ F ++
Sbjct: 421 CRKGMISVAMNLRNEML--------QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMT 472
Query: 408 KKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466
++ + D LI GH K GN +A E+ + M + + D Y L++ + + G+
Sbjct: 473 ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDID 532
Query: 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526
AK M+ P + ++ +L G + A RV M+ K +K + + ++
Sbjct: 533 TAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMI 592
Query: 527 EALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLS--VLSEK-GKTIAAVKLLDFCLGR 580
+ G+ + ++ M+ G VP+ +++L+ V E K VK ++ G
Sbjct: 593 KGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQG- 651
Query: 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640
+ D+ +Y +L + A +L K++E+G D + +I G + N +A
Sbjct: 652 GLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUU3 | PP190_ARATH | No assigned EC number | 0.7369 | 0.9628 | 0.8560 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00023205001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (763 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 673 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 2e-18
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241
DVVTYNT+I+GY + K++EA KLF EMK++ I+P V +Y+ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 8e-18
Identities = 116/514 (22%), Positives = 196/514 (38%), Gaps = 102/514 (19%)
Query: 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK 127
G+ HA + + G + D D+ LI Y K G V + +FD M + R
Sbjct: 204 ARGREVHAHVV-----RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCI 254
Query: 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKLETAIRFFED 186
S++A+ G + F M ++P ++M + + +L R +
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDP-----DLMTITSVISACELLGDERLGRE 309
Query: 187 MKS----RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242
M G ++DV N++I Y EAEK+F+ M+ K+ +S+T MI GY
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYE 365
Query: 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN 302
D AL + M+ +V P+ +T ++L G + +V L E+ ER
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL-DVGVKLHELAER------- 417
Query: 303 SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDK 362
K +I + A LIE + K + D+A+++
Sbjct: 418 -----------------------KGLISYVVVANA-----LIEMYSKCKCIDKALEVFHN 449
Query: 363 LVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422
+ EK++I S+ +I L N + +A IFFRQ++ + V +
Sbjct: 450 IPEKDVI------------SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497
Query: 423 GHSKEGNPDSAFEIVKIMGRRGVPRDA-------DAYI-C-------------------- 454
++ G EI + R G+ D D Y+ C
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557
Query: 455 --LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVE 512
L+ Y+ G+ + A + M+E G +P F S++ + G V SM E
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 513 K-GVKENLDLVAKILEALLMRGHVEEALGRIDLM 545
K + NL A +++ L G + EA I+ M
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 9e-17
Identities = 87/434 (20%), Positives = 174/434 (40%), Gaps = 72/434 (16%)
Query: 39 ALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98
AL+ F +E F T+ ++E + + + + + G + D+ M ++
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 99 ESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE 158
+ K G++ ++ ++FD M ER++ S+ + ++ G Y A F +M +G +
Sbjct: 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 159 PTRHTYNVM------LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212
T+ VM L +L + +K+ G+ D +I+ Y++ +
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLHCCV-----LKT-GVVGDTFVSCALIDMYSKCGDI 275
Query: 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
++A +F M EK T +++ +M+ GY +++AL ++ EM
Sbjct: 276 EDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEM--------------- 316
Query: 273 LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332
D+G + D F ++ + + L A +IR
Sbjct: 317 ----RDSGVSI-----------------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392
P + L++ + K + A + D++ K +I S+N +I +
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI------------SWNALIAGYGN 403
Query: 393 NGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGR--RGVPRDA 449
+G+ KA F +++ +GV + V F ++ G + +EI + M R PR A
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-A 462
Query: 450 DAYICLIESYLRKG 463
Y C+IE R+G
Sbjct: 463 MHYACMIELLGREG 476
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 6e-16
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278
P V++Y T+I GY + ++AL++F+EMK +KPN TY+ L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 9e-16
Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 27/270 (10%)
Query: 33 AKNSEHALQFFR--WVERAGLFNHDRETHLKMIEILG--RVGKLNHARCILLDMPKKGVQ 88
A N A FR W + + L+ LG R G+ H C+L K GV
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC-CVL----KTGVV 256
Query: 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRY 148
D + LI+ Y K G ++++ +FD M E++ +++++ G A
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR 208
+ +M G+ + T+++M+ F LE A + + G LD+V +++ Y++
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT 268
+ +M++A +F M KN+ IS+ +I GY R A+ +F+ M + V PN VT
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
Query: 269 YTALL-----PGLCDAGK-----MVEVQKV 288
+ A+L GL + G M E ++
Sbjct: 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRI 458
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 7e-15
Identities = 95/389 (24%), Positives = 169/389 (43%), Gaps = 34/389 (8%)
Query: 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237
+ A RF + +++ +S T+N +++ + +D A ++ ++E ++ YTT+
Sbjct: 423 KEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297
I + D +F EM + V+ N T+ AL+ G AG++ + M + +
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH--YGILIENFCKAEMYDR 355
P D VF L+ +SG ++ A DVL M + P + H G L++ A DR
Sbjct: 539 KP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 356 AIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DP 414
A ++ + E I P+ Y + G A + + KKGV D
Sbjct: 598 AKEVYQMIHEYNIKGTPE--------VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 415 VAFNNLI--RGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472
V F+ L+ GH+ G+ D AFEI++ ++G+ +Y L+ + + K AL
Sbjct: 650 VFFSALVDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK---NWKKAL 704
Query: 473 DSMIEDGHS----PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528
+ + ED S P S +++ +L E ++ A V+ M G+ N + +L A
Sbjct: 705 E-LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
Query: 529 LLMRGHVEEALGRIDLMMQS---GSVPNF 554
+ + L DL+ Q+ G PN
Sbjct: 764 SERKDDADVGL---DLLSQAKEDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 3e-13
Identities = 68/295 (23%), Positives = 138/295 (46%), Gaps = 11/295 (3%)
Query: 75 ARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134
A +L + + G++ D ++ LI + K G V ++F M GVE +V ++ AL
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG--I 192
R G+ A + M S+ ++P R +N ++ S ++ A +MK+ I
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252
D +T ++ ++D A++++ + E NI+ T YT + D AL
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312
I+D+MK VKP+ V ++AL+ AG + + ++L++ ++ I + L+G
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGAC 694
Query: 313 CKSGHLNAAADV---LKAM-IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363
+ + A ++ +K++ +R ++ T LI C+ +A+++L ++
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVST----MNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 62 MIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121
+I+ R G++ A M K V+ D +F LI + G+ G V + FD++ ++
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMK 569
Query: 122 VE-RSVK----SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML-------- 168
E + + AL K G+ AK + + I+ T Y + +
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 169 WGFFLSL---------------------------KLETAIRFFEDMKSRGISLDVVTYNT 201
W F LS+ L+ A +D + +GI L V+Y++
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261
++ + K +A +L+ ++K + PTV + +I + AL + EMK
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 262 VKPNAVTYTALL 273
+ PN +TY+ LL
Sbjct: 750 LCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 159 PTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGY 206
P TYN ++ G+ K+E A++ F +MK RGI +V TY+ +I+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-12
Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 64 EILG--RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121
E+LG R+G+ H + K G D + LI+ Y G E+ K+F M+
Sbjct: 299 ELLGDERLGREMHGYVV-----KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-- 351
Query: 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAI 181
+ S+ A+ + G A + M + + P T +L L+ +
Sbjct: 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241
+ E + +G+ VV N +I Y++ K +D+A ++F + EK+ VIS+T++I G
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGL 465
Query: 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLP-----GLCDAGKMVEVQKVLREMV--E 294
R +AL F +M +KPN+VT A L G GK + VLR + +
Sbjct: 466 RLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAH-VLRTGIGFD 523
Query: 295 RYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYD 354
++P N+ LL + + G +N A + + + + + IL+ +
Sbjct: 524 GFLP---NA----LLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGS 571
Query: 355 RAIKLLDKLVEKEI 368
A++L +++VE +
Sbjct: 572 MAVELFNRMVESGV 585
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 6e-12
Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 10/219 (4%)
Query: 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204
A+ F+ M E T +N ML G+ L E A+ + +M+ G+S+D T++ MI
Sbjct: 278 ARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 205 GYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264
++R ++ A++ A + +++ T ++ Y R +DA +FD M +
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389
Query: 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV 324
N +++ AL+ G + G+ + ++ M+ + P ++ F+ +L SG ++
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEI 448
Query: 325 LKAMIR-LSIPTEAGHYGILIENFCKAEMYDRAIKLLDK 362
++M I A HY +IE + + D A ++ +
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 7e-12
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 42/211 (19%)
Query: 70 GKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY 129
G + A I DM KKGV+ DE F L++ G G + ++ +I ++ G++ SY
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189
+L M A N W + A+ +ED+KS
Sbjct: 688 SSL----------MGA-----------------CSNAKNW--------KKALELYEDIKS 712
Query: 190 RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249
+ V T N +I ++ +A ++ +EMK + P I+Y+ ++ VA ER DD
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL---VASERKDD 769
Query: 250 A---LRIFDEMKSFDVKPNAVTYTALLPGLC 277
A L + + K +KPN V + GLC
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 77/336 (22%), Positives = 144/336 (42%), Gaps = 57/336 (16%)
Query: 176 KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235
K++ F +M + G+ +V T+ +I+G R ++ +A + M+ KN++P + +
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 236 TMIK--GYV-AVERADDALRIFDEMK--SFDVKPNAVTYTALLPGLCDAGKM---VEVQK 287
+I G AV+RA D L EMK + + P+ +T AL+ +AG++ EV +
Sbjct: 547 ALISACGQSGAVDRAFDVLA---EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 288 VLRE--------------------------------MVERYIPPKDNSVFMKLLGVQCKS 315
++ E M ++ + P D F L+ V +
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHA 662
Query: 316 GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST 375
G L+ A ++L+ + I Y L+ A+ + +A++L + + K I LRP
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI--KSIKLRPT-- 718
Query: 376 LDMEASSYNPMIQHLCHNGQTGKA-EIFFRQLMKKGVLDP--VAFNNLIRGHSKEGNPDS 432
S+ N +I LC Q KA E+ MK+ L P + ++ L+ ++ + D
Sbjct: 719 ----VSTMNALITALCEGNQLPKALEVL--SEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 433 AFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468
+++ G+ + C+ LR+ E A A
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 2e-09
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 190 RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223
+G+ DVVTYNT+I+G R ++DEA +L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 93/452 (20%), Positives = 166/452 (36%), Gaps = 67/452 (14%)
Query: 98 IESYGKKGIVQESVKIFDIMKQLG-VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156
IE G +E++++F+I++ +YDAL + + K + + S G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216
EP ++ N +L L A R F++M R + ++ T+I G EA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAF 209
Query: 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL 276
LF EM E + ++ M++ + A R ++ +K V T + L
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSA----RAGQQLHCCVLKTGVVGDTFVSCAL 265
Query: 277 CD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332
D G + + + V M P K + +L G+ A + M
Sbjct: 266 IDMYSKCGDIEDARCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-- 318
Query: 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392
G+ I+ F + M I++ +L + L+ ++ +I+
Sbjct: 319 -------SGVSIDQFTFSIM----IRIFSRL----------ALLEHAKQAHAGLIRT--- 354
Query: 393 NGQTGKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADA 451
G LD VA L+ +SK G + A + M R+ + +
Sbjct: 355 -----------------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----S 393
Query: 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMV 511
+ LI Y G A + MI +G +P F +V+ + G + + +SM
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 512 E-KGVKENLDLVAKILEALLMRGHVEEALGRI 542
E +K A ++E L G ++EA I
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 88/401 (21%), Positives = 149/401 (37%), Gaps = 70/401 (17%)
Query: 180 AIRFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMI 238
A+ FE +++ +L TY+ ++ K + + ++ ++ EP ++
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 239 KGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIP 298
+V DA R+FDEM + N ++ ++ GL DAG E + REM E
Sbjct: 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE---- 217
Query: 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFC--KAEMYDRA 356
D S +A M+R S + G + + C K +
Sbjct: 218 --DGS---------------DAEPRTFVVMLRASAGLGSARAGQQL-HCCVLKTGVVG-- 257
Query: 357 IKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416
D V +I DM Y+ C G A F + +K VA
Sbjct: 258 ----DTFVSCALI-------DM----YSK-----C--GDIEDARCVFDGMPEKTT---VA 292
Query: 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476
+N+++ G++ G + A + M GV D + +I + R AK A +I
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 477 EDGHSPASSLFRSVMESLFED-GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535
G P + + + L+ GR++ A V M K + L+A G
Sbjct: 353 RTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA----GYGNHGRG 407
Query: 536 EEALGRIDLMMQSGSVPNFDSLLSVLS--------EKGKTI 568
+A+ + M+ G PN + L+VLS E+G I
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 47/241 (19%)
Query: 70 GKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY 129
G+L A +L M + V DED + L K V+E ++ V+
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH--TYNVMLWGFFLSLKLETAIRFFEDM 187
+A+ + +R G + A F KM P R ++NV++ G+ + + A+ + M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKM------PERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178
Query: 188 KSRGISLDVVTY-----------------------------------NTMINGYNRFKKM 212
G+ DV T+ N +I Y + +
Sbjct: 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238
Query: 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
A +F M ++ IS+ MI GY + L +F M+ V P+ +T T++
Sbjct: 239 VSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 273 L 273
+
Sbjct: 295 I 295
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 9e-08
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 197 VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV 231
VTYNT+I+G + +++EA +LF EMKE+ IEP V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 69/286 (24%), Positives = 119/286 (41%), Gaps = 37/286 (12%)
Query: 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD 248
S SL V N M++ + RF ++ A +F +M E++ + S+ ++ GY D
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAKAGYFD 169
Query: 249 DALRIFDEMKSFDVKPNAVTYTALL---PGLCDAGKMVEVQKVLREMVERYIPPKDNSVF 305
+AL ++ M V+P+ T+ +L G+ D + EV V R+ D V
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA----HVVRFGFELDVDVV 225
Query: 306 MKLLGVQCKSGHLNAAADVL-----------KAMIRLSIPTEAGHYGI-----LIENFCK 349
L+ + K G + +A V AMI G+ + E
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 350 AEMYD-----RAIKLL-DKLVEKEI-ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIF 402
++ A +LL D+ + +E+ ++ ++ S N +IQ G G+AE
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD 448
F ++ K D V++ +I G+ K G PD A E +M + V D
Sbjct: 346 FSRMETK---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 197 VTYNTMINGYNRFKKMDEAEKLFAEMKEKNI 227
VTYN++I+GY + K++EA +LF EMKEK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171
V +Y+ L ++G+ A + FN+M GI+P +TY++++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 20/256 (7%)
Query: 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156
LIE Y K + +++++F + E+ V S+ ++ + R A +F +ML
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216
++P T L L + GI D N +++ Y R +M+ A
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544
Query: 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL 276
F EK+ V+S+ ++ GYVA + A+ +F+ M V P+ VT+ +LL
Sbjct: 545 NQF-NSHEKD----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 277 CDAGKMVEVQKVLREMVERY-IPP--KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI 333
+G + + + M E+Y I P K + + LLG ++G L A + + M I
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG---RAGKLTEAYNFINKM---PI 653
Query: 334 PTEAGHYGILIENFCK 349
+ +G L+ N C+
Sbjct: 654 TPDPAVWGALL-NACR 668
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459
D V +N LI G+ K+G + A ++ M +RG+ + Y LI+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 59/265 (22%), Positives = 99/265 (37%), Gaps = 47/265 (17%)
Query: 316 GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST 375
L AA + + R + +LI ++ ++ +D+A+ KL +K+
Sbjct: 418 ADLETAAQLDPELGRADL--------LLILSYLRSGQFDKALAAAKKLEKKQ-------- 461
Query: 376 LDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA-- 433
AS +N + G KA F + + A NL R +EGNPD A
Sbjct: 462 -PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520
Query: 434 -FE-IVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491
FE ++ I P++ A + L YLR G +A L+ E + ++
Sbjct: 521 RFEKVLTID-----PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-NPQEIEPALALA 574
Query: 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG-- 549
+ G+++ A ++ D EA LM LGR L
Sbjct: 575 QYYLGKGQLKKALAILNEAA--------DAAPDSPEAWLM-------LGRAQLAAGDLNK 619
Query: 550 SVPNFDSLLSVLSEKGKTIAAVKLL 574
+V +F LL++ + A+ LL
Sbjct: 620 AVSSFKKLLALQPDSA---LALLLL 641
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 264 PNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPP 299
P+ VTY L+ G C GK+ E K+ EM +R I P
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 18/233 (7%)
Query: 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK 127
R+G L + I + + G+ +D + L++ Y + G + + F+ E+ V
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555
Query: 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187
S++ L + G+ MA FN+M+ G+ P T+ +L S + + +F M
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 188 KSR-GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG---YVA 243
+ + I+ ++ Y +++ R K+ EA +M I P + ++ +
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRH 672
Query: 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGL-CDAGKMVEVQKVLREMVER 295
VE + A + F++ PN+V Y LL L DAGK EV +V + M E
Sbjct: 673 VELGELAAQHI-----FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 225 KNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258
K ++P V++Y T+I G R D+A+ + DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMV 293
+KP+ VTY L+ GLC AG++ E ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266
++Y T+I G R ++AL +F EMK ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSK 426
+YN +I C G+ +A F ++ K+G+ + ++ LI G K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDV 262
++Y ++I GY + ++AL +F EMK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 196 VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP 229
+ TYN ++ + D A + EMK ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445
V +N+LI G+ K G + A E+ K M +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (91), Expect = 0.003
Identities = 49/271 (18%), Positives = 95/271 (35%), Gaps = 9/271 (3%)
Query: 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVK-PNAV 267
K + A + E K + + + + +AL + +E A
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327
L L G++ E ++L + +E + P + L + G A ++L+
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387
+ L + + + + Y+ A++L +K +E L+ A + +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL------DPELNELAEALLALG 174
Query: 388 QHLCHNGQTGKAEIFFRQLMK-KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP 446
L G+ +A + +K D A NL + K G + A E + P
Sbjct: 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DP 233
Query: 447 RDADAYICLIESYLRKGEPADAKTALDSMIE 477
+A+A L L G +A AL+ +E
Sbjct: 234 DNAEALYNLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 673 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.7 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.45 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.43 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.33 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.31 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.87 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.73 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.22 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.97 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.96 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.92 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.82 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.81 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.79 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.78 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.74 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.73 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.69 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.66 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.56 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.55 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.47 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.47 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.41 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.36 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.36 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.32 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.31 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.29 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.19 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.93 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.93 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.86 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.85 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.76 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.72 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.63 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.58 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.55 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.33 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.32 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.28 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.24 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.18 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.14 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.06 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.05 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.02 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.99 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.98 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.9 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.85 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.75 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.32 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.23 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.13 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.13 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.81 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.45 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.43 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.28 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.28 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.99 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.99 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.95 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.93 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.81 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.79 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.45 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.34 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.97 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.94 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.62 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.56 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.42 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.04 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.95 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.93 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.82 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.65 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.61 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.59 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.51 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.42 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.31 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.2 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.13 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.54 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.44 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.31 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.25 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 89.22 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.96 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.68 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.39 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.27 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.22 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.16 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.14 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.91 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 87.87 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.63 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.35 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 87.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.23 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.98 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.2 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.4 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.4 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.18 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.01 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.97 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.61 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.19 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.14 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.65 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 83.49 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 83.35 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.18 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.18 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.72 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.64 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.6 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.55 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.93 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 81.81 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.53 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.49 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.33 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.05 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.98 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.93 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.8 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.56 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 80.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.3 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.16 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-72 Score=611.86 Aligned_cols=607 Identities=18% Similarity=0.209 Sum_probs=531.7
Q ss_pred cCCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHH
Q 005856 17 LVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (673)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (673)
.++..+.+.++..+.+.|++++|+.+|+.+.+.+ .+|+..+|..++..|.+.+.++.+.+++..+.+.+..++...++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 3445556788889999999999999999998876 789999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 176 (673)
++..|++.|+++.|..+|++|.+ ||..+|+.+|.+|++.|++++|+.+|++|...|+.||..||+.++++|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999974 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (673)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (673)
++.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|+.++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999864 6889999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 005856 257 MKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE 336 (673)
Q Consensus 257 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (673)
|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.| |..+++.++.+|++.|+++.|.++|++|. .||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999888 89999999999999999999999999985 478
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHH
Q 005856 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPV 415 (673)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 415 (673)
..+|+.++.+|++.|++++|+++|++| ...++.||..+|+.++.+|++.|+++.|.++++.+.+.+ .++..
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M--------~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALM--------EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHH--------HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 889999999999999999999999999 445677888899999999999999999999999888888 78888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (673)
+++.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 888888888888888888888888864 4677888888888888888888888888875 57777777776666555
Q ss_pred ccCCHHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 496 EDGRVQTASRVMKSMVEKGV------------------------------KENLDLVAKILEALLMRGHVEEALGRIDLM 545 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (673)
+.|+.+.+.+++..+.+.|+ .+|..+|+.++.+|.+.|+.++|+++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555444444444332 567888999999999999999999999999
Q ss_pred HhCCCCCC---HHHHHHHHHccCChHHHHHHHHHHh-cCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 005856 546 MQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCL-GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (673)
Q Consensus 546 ~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (673)
.+.|+.|| +..++.+|.+.|++++|.++|+.+. +.+..|+..+|..++++|.+.|++++|.+++++|. ..|+.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 99999998 5668888999999999999999998 57889999999999999999999999999999984 45677
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 622 KSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
..|..|+.+|..+|+.+.++.+.+.+.+.+++
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 77888888888888888877777776666543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-72 Score=609.74 Aligned_cols=566 Identities=20% Similarity=0.236 Sum_probs=352.6
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 005856 21 FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES 100 (673)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 100 (673)
.+++.++..+.+.|++++|+.+|+.|...+ +.|+..+|..++++|...+++..+.+++..+.+.|+.|+..+++.++.+
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 344445555555555555555555555443 4555555555555555555555555555555555555555556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (673)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 180 (673)
|++.|+++.|..+|++|.+ +|..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 6666666666666666653 555666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (673)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (673)
.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666542 45666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhH
Q 005856 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (673)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (673)
|+.||..||+.++.+|++.|+++.+.++++.+.+.|..| +..+++.++.+|++.|++++|.++|++|.+ +|..+|
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~ 458 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISW 458 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeH
Confidence 666666666666666666666666666666666666655 666666666666666666666666666542 455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHH
Q 005856 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNN 419 (673)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 419 (673)
+.++.+|++.|+.++|+.+|++|.. +..||..+|+.++.+|++.|..+.+.+++..+.+.+ .++..++++
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~---------~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL---------TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---------CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 6666666666666666666666631 245666666666666666666666666666666666 556666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR 499 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (673)
|+.+|++.|++++|..+|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 666666666666666666655 356666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHHH
Q 005856 500 VQTASRVMKSMV-EKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLD 575 (673)
Q Consensus 500 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~ 575 (673)
+++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++| +..|+ |.+++.+|...|+.+.+....+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 666666666666 3466666666666666666666666666666655 24555 4455666666666666666666
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 618 (673)
++++..|. +...|..+..+|...|++++|.++.+.|.+.+..
T Consensus 682 ~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 682 HIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 66655432 3444555666666666666666666666665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=552.81 Aligned_cols=519 Identities=17% Similarity=0.295 Sum_probs=475.1
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 005856 21 FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES 100 (673)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 100 (673)
.....++..+.+.|+++.|+++|++|.+.+..+++...+..++..|.+.|.++.|..+++.|.. |+..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 3356667788888999999999999998875677888888899999999999999999999975 799999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (673)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 180 (673)
|++.|+++.|..+|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE--KNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChh
Q 005856 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG 338 (673)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (673)
+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.| |..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhH
Q 005856 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAF 417 (673)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 417 (673)
+|+.++.+|++.|++++|.++|++| ...+..|+..+|+.++.+|++.|++++|.++|++|...+ .||..+|
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM--------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI--------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH--------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999 445677999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----c-------------------CChHHHHHHHHH
Q 005856 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----K-------------------GEPADAKTALDS 474 (673)
Q Consensus 418 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~ 474 (673)
+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++..|.+ + +..++|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865432 1 123678899999
Q ss_pred HHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 005856 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
|.+.|+.||..||+.++.+++..+....+..+++.|...+..|+..+|+.++.++.+. .++|+.++++|...|+.|++
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999988888888888888888888778888889999999887432 46899999999999999884
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=543.18 Aligned_cols=542 Identities=17% Similarity=0.253 Sum_probs=327.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGV-QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
++...|..+...+.+.|+++.|.++|++|.+.|+ +++...+..++..|.+.|..++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4444555555555566666666666666655553 34444555555566666666666666655543 566666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 005856 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (673)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 212 (673)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS--FDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (673)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 290 (673)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666644 3455666666666666666666666666666
Q ss_pred HHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhcc
Q 005856 291 EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (673)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (673)
.|.+.++.| +..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|
T Consensus 604 ~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM------- 675 (1060)
T PLN03218 604 MIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA------- 675 (1060)
T ss_pred HHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------
Confidence 666665555 555666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 005856 371 RPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (673)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 449 (673)
...+..|+..+|+.++.+|++.|++++|.++|+.|.+.+ .|+..+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 676 -~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 676 -RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred -HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 334455566666666666666666666666666665555 556666666666666666666666666666665666666
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (673)
.+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +.++++..+.+.+...+. ....
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~ 822 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQ 822 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccc
Confidence 6666666666666666666666666666666666666666554332 123333333222221100 0001
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAY 606 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 606 (673)
...+..++|+.+|++|.+.|+.|+.. .++..+...+....+..+++.+...+..++...|+.+++++.+. .++|.
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 11223467888888888888888843 34555556777788888877666666666777888888877321 35788
Q ss_pred HHHHHHHHcCCCCCHH
Q 005856 607 SILFKIMEKGGVTDWK 622 (673)
Q Consensus 607 ~~~~~~~~~~~~~~~~ 622 (673)
.++++|...|..|++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 8888888888776653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-61 Score=509.37 Aligned_cols=525 Identities=20% Similarity=0.227 Sum_probs=437.1
Q ss_pred ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005856 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG-IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (673)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (673)
..+..+|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456688888999999999999999999887653 678889999999999999999999999999998888899999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999988864 68889999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005856 282 MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLD 361 (673)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 361 (673)
.+.+.+++..+.+.|..+ |..+++.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|+++|+
T Consensus 240 ~~~~~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HHHHHHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999888888887 88899999999999999999999998885 4688889999999999999999999999
Q ss_pred HHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 005856 362 KLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (673)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 440 (673)
+| ...++.||..||+.++.+|++.|+++.|.+++..+.+.+ +++..+++.|+.+|++.|++++|.++|+.|
T Consensus 315 ~M--------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 315 EM--------RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HH--------HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99 455677899999999999999999999999999999888 888899999999999999999999999988
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCH
Q 005856 441 GRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENL 519 (673)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 519 (673)
.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+. |+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 64 6888999999999999999999999999998899999999999999999999999999999999864 888999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
.+|+.++.+|.+.|++++|.++++++ +..|+ |..++.+|...|+++.|..+++++.+.+|. +...|..++.+|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHH
Confidence 99999999999999999999888754 56777 667888888999999999999888776543 456788899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC----HHHHHH----HHHHHHhcCCcc----hHHHHHHHHHhhh---------cccc
Q 005856 597 LAAGKTLNAYSILFKIMEKGGVTD----WKSSDK----LIAGLNQEGNTK----QADILSRMIRGEM---------SRGS 655 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~----l~~~~~~~g~~~----~a~~~~~~~~~~~---------~~~~ 655 (673)
.+.|++++|.+++++|.++|..+. |..... .+.+-..+.+.+ ....+...+.+.+ ++.+
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 999999999999999998875322 111000 000001111111 1122333333323 4556
Q ss_pred hhhhhhhhcchhhhhcc
Q 005856 656 QKEKKQRHCRHSMILNY 672 (673)
Q Consensus 656 ~~~~~~~~~~~~~~~~~ 672 (673)
+.+|+..|+.|||.|.|
T Consensus 619 ~~~~~~~~~~hsekla~ 635 (697)
T PLN03081 619 EDEEKVSGRYHSEKLAI 635 (697)
T ss_pred HHHHHHHHHhccHHHHH
Confidence 78999999999999876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=497.23 Aligned_cols=508 Identities=16% Similarity=0.231 Sum_probs=452.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
.+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+..++..|.+.|+.|+..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344578899999999999999999999998754 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 005856 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (673)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 212 (673)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999994 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (673)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 292 (673)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468899999999999999999999999999
Q ss_pred HHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCC
Q 005856 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372 (673)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 372 (673)
.+.|+.| |..+|+.++.+|++.|+++.|.+++..+.+.|++|+..+++.++.+|++.|++++|.++|++| .
T Consensus 317 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m--------~ 387 (697)
T PLN03081 317 RDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM--------P 387 (697)
T ss_pred HHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC--------C
Confidence 9999888 889999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred CCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHH
Q 005856 373 QSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-RGVPRDAD 450 (673)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 450 (673)
. ||..+|+.++.+|++.|+.++|.++|++|.+.+ .||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 2 688899999999999999999999999999998 89999999999999999999999999999986 68999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+.++. +..+|..++..|.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~ 539 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYN 539 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHH
Confidence 9999999999999999999998876 68899999999999999999999999999999766543 5678999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC--H--HHHH---HH-HH-------ccCChHHHHHHHHHHhcCCCCCCh
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPN--F--DSLL---SV-LS-------EKGKTIAAVKLLDFCLGRDCIIDL 586 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~--~--~~~~---~~-~~-------~~g~~~~A~~~~~~~~~~~~~~~~ 586 (673)
+.|++++|.++++.|.+.|+... . ..+. .. .. ...-++....+.+++.+.|..|+.
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999887533 1 1100 00 00 011234555667777777877764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=352.23 Aligned_cols=592 Identities=15% Similarity=0.118 Sum_probs=465.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
.++...|+++.|...|+.+.+.. |.+...+..+..++...|++++|...++.+.+... .+...+..+...+.+.|++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCH
Confidence 35556777777777777777665 55666677777777777888888777777766543 3566777777777788888
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (673)
++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.+.. .......++..+.+.|++++|..+++.+
T Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888777654 345566777777777778888888888777665322 3344555667777888888888888887
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (673)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (673)
.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+.+.... +.+..
T Consensus 458 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 458 EKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 7653 3467778888888888888888888888887653 3355667778888888888888888888887754 45667
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (673)
++..+...+...|+.++|...++++... .|.+...+..++..+...|+++.|..+++.+.+.. +.+...+..+..+|
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 7888888888888899998888888775 45577778888888888999999999998887753 56677888888899
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (673)
...|++++|+..|+.+.+.. +.+...+..+..++...|++++|...++++.+..+.+..++..++..+...
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ---------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 99999999999998886543 124456778888888899999999999998888888888899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 005856 428 GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM 507 (673)
Q Consensus 428 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 507 (673)
|++++|..+++.+.... +.+...+..+...+...|++++|...++.+...+ |+..++..+...+...|++++|...+
T Consensus 683 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999888764 4467788888888999999999999999988754 55577778888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 508 KSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
+.+.+..+. +...+..++..|...|++++|.+.|+++.+ ..|+ +..++..+...|+ .+|+.++++++...+.
T Consensus 760 ~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 760 EAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 999887654 778888888999999999999999999887 3444 3457777788888 8899999999887654
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 005856 584 IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (673)
Q Consensus 584 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (673)
++..+..++.++...|++++|.+.++++++.++. ++..+..++.+|.+.|++++|..+.+.+.
T Consensus 836 -~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 836 -IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4556678899999999999999999999987644 77788889999999999999977766553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=338.93 Aligned_cols=593 Identities=16% Similarity=0.085 Sum_probs=418.2
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 110 (673)
...|+++.|+..|+.+.+.+ +.....+..+..++...|+++.|...++.+.+..+ .+...+..+...+.+.|++++|
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHH
Confidence 34455555555555555543 23333444445555566666666666666555432 2445555556666666666666
Q ss_pred HHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 111 VKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 66666665543 3445566666666666677777777766665542 224455555666666667777777776666655
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005856 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (673)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (673)
... .......++..+.+.|++++|.++++.+... .+++..+|..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 322 2334445566667777777777777777654 34456677777777778888888888887776643 34455666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 005856 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (673)
Q Consensus 271 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (673)
.+...+...|++++|.+.++.+... .|.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC
Confidence 6777777788888888888877764 34467777777788888888888888888776654 45556667777788888
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (673)
|++++|..+++.+.+.. +.+...|..+..++...|++++|...++.+.+..+.++..+..+..++...|++
T Consensus 581 ~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 581 GQLKKALAILNEAADAA---------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred CCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 88888888888875432 235567888888888888888888888888887777788888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888887753 3357788888888888888888888888887754 455667777778888888999999988888
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCCh
Q 005856 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL 586 (673)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 586 (673)
...++.+ ..+..++.++...|++++|.+.++++.+ ..|+ ...++..+...|++++|...|+++++..|+ +.
T Consensus 730 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 804 (899)
T TIGR02917 730 LKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NA 804 (899)
T ss_pred HhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CH
Confidence 8875443 5666788888888999999988888887 3344 334666777889999999999988887653 56
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhc
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMS 652 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 652 (673)
..+..+++++...|+ .+|++.++++++... .+...+..++.++...|++++|....+.+.+.++
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777888899999888 889999998887642 3445566788888999999999777666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-29 Score=281.63 Aligned_cols=600 Identities=12% Similarity=0.063 Sum_probs=407.7
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHH--------------
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMF-------------- 94 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------- 94 (673)
+....++.+.|.+.++++.... |.++.++..++.++.+.|+.++|.+.++++.+..+. +....
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchh
Confidence 4445556666666666665554 455555555666666666666666666655554322 22211
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005856 95 --EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKS-YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171 (673)
Q Consensus 95 --~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (673)
......+.+.|++++|...|+.+.+.+ +++... ...........|++++|+..++++.+.. +-+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 222334555566666666666655432 222211 1111111122355666666666655542 22344445555555
Q ss_pred HhcCCHHHHHHHHHHHHhC------------------------------------------------------CCCcCHH
Q 005856 172 FLSLKLETAIRFFEDMKSR------------------------------------------------------GISLDVV 197 (673)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~------------------------------------------------------~~~~~~~ 197 (673)
...|++++|+..++++... ...|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 5556666555555554321 1111111
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH-------
Q 005856 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP-NAVTY------- 269 (673)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------- 269 (673)
.......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..-.. ....+
T Consensus 272 -~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 -ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 0122455677899999999999998863 3377889999999999999999999999988753111 11111
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 005856 270 -----TALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (673)
Q Consensus 270 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (673)
......+.+.|++++|...|++++.. .|.+...+..+..++...|++++|+..|+++.+.. +.+...+..+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 12244667899999999999999986 56688888999999999999999999999999864 44555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH 424 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (673)
..|. .++.++|+.+++.+...................+..+...+...|++++|...+++..+..|.++..+..+...|
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6664 467899998887763211000000000011224556677888999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh---------hHHHHHHHHh
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS---------LFRSVMESLF 495 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~ 495 (673)
...|++++|...++.+.+.. +.+...+..+...+...++.++|+..++.+......++.. .+......+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998753 2355666666667788999999999998764322222211 1234456788
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHH
Q 005856 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAV 571 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~ 571 (673)
..|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++++ ..|+ ...++.++...|++++|+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999872 233556677899999999999999999999998 5566 345777888999999999
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 572 KLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV--T---DWKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
+.++++++..+. +...+..++.++...|++++|.+.+++++..... + ....+..+...+...|++++|...++.
T Consensus 658 ~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999988887543 4455667899999999999999999999875432 2 224556678889999999999777665
Q ss_pred HH
Q 005856 647 IR 648 (673)
Q Consensus 647 ~~ 648 (673)
..
T Consensus 737 Al 738 (1157)
T PRK11447 737 AM 738 (1157)
T ss_pred HH
Confidence 54
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-28 Score=269.88 Aligned_cols=573 Identities=13% Similarity=0.077 Sum_probs=377.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhH------
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY------ 129 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------ 129 (673)
...+...++.+...++.+.|.+.++++....+. ++.++..++..+.+.|+.++|.+.++++.+.. |.+...+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~ 105 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHH
Confidence 334566777888999999999999999887554 78899999999999999999999999999865 2333322
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 005856 130 ----------DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH-TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVT 198 (673)
Q Consensus 130 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 198 (673)
..+...+...|++++|...|+++.+.+ +|+.. ....+.......|+.++|...++++.+..+. +...
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~ 183 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGL 183 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHH
Confidence 334557889999999999999998763 33332 1212222233469999999999999988533 6778
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCC----------------CCCC---HHHHHHH----------------------
Q 005856 199 YNTMINGYNRFKKMDEAEKLFAEMKEKN----------------IEPT---VISYTTM---------------------- 237 (673)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~---~~~~~~l---------------------- 237 (673)
+..+...+...|+.++|+..++++.... ..++ ...+...
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 8889999999999999999999875431 0111 1112111
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhH
Q 005856 238 ------------IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF 305 (673)
Q Consensus 238 ------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 305 (673)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.++..........+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 233445566666666666666542 2345566666666666666666666666666542211111111
Q ss_pred ------------HHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 306 ------------MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 306 ------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++++.. +
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p- 416 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----P- 416 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----C-
Confidence 112334556666666666666666653 3344455556666666666666666666665432 1
Q ss_pred CCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC---------CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005856 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV---------LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 444 (673)
.+...+..+...+. .++.++|..+++.+....+ .....+..+...+...|++++|.+.++++.+..
T Consensus 417 ----~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 417 ----GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred ----CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12233444444443 3455666665554332210 011234445566667788888888888777753
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH----
Q 005856 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLD---- 520 (673)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 520 (673)
. -+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......++..
T Consensus 492 P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 492 P-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 2 255666777777888888888888888877532 2233334444444566778888887777654332222211
Q ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 005856 521 -----LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594 (673)
Q Consensus 521 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 594 (673)
.+...+..+...|++++|+++++ ..+..|. ...+...+.+.|++++|+..++++++..|. +...+..++.
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~ 645 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIE 645 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 12245667778888888888877 2222332 456788888999999999999999998765 4666778999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 595 ALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 595 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+|...|++++|++.+++++... +.+...+..+..++...|++++|..+.+.+.+..
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999988653 3345556678888999999999988777776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-25 Score=232.90 Aligned_cols=582 Identities=14% Similarity=0.087 Sum_probs=411.5
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 110 (673)
...|++++|+..|+.+++.+ |.+..++..+.++|...|++++|+..+++..+.++ -|...+..+ ..+ +++++|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhH
Confidence 34599999999999999998 77899999999999999999999999999998754 244444443 222 899999
Q ss_pred HHHHHHHHHcCCccCHhhHHHHHHH--------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 005856 111 VKIFDIMKQLGVERSVKSYDALFKL--------ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKLETAI 181 (673)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 181 (673)
..+++++.+.. |-+...+..+... |.+.+ .|...++ .......|+..+.... .+.|...+++++|+
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999875 3445555555555 55554 4444444 3333334455555555 88999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 182 RFFEDMKSRGISLDVVTYNTMINGYNR-FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (673)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (673)
..+..+.+.+.. +......|..+|.. .++ +.+..++... ++.+...+..+...|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 999999998644 56667777778887 466 8888886542 3358889999999999999999999999997643
Q ss_pred CC-CCCHHHHHHH------------------------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHH
Q 005856 261 DV-KPNAVTYTAL------------------------------LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (673)
Q Consensus 261 ~~-~~~~~~~~~l------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (673)
-. .|...++... +..+.+.++++.+.++. . ..|.+.. ...-.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~-~~~r~ 349 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL----A--TLPANEM-LEERY 349 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh----c--CCCcchH-HHHHH
Confidence 21 1333333222 33444555555444331 1 3343332 22222
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHH
Q 005856 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQH 389 (673)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (673)
......+...++...+..+.+.. +-+......+.....+.|+.++|..+|+..... .....++......++..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPF------QGDARLSQTLMARLASL 422 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC------CcccccCHHHHHHHHHH
Confidence 22234466667777777776642 445555666666778889999999999988542 11122233344466666
Q ss_pred HHccCC---HhHHH-------------------------HHHHHHHHcCCC--CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 005856 390 LCHNGQ---TGKAE-------------------------IFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (673)
Q Consensus 390 ~~~~~~---~~~a~-------------------------~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 439 (673)
|.+.+. ..++. ..+.......++ ++..+..+..++.. +++++|...+..
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 666554 22222 222222233345 77788888888876 788889998887
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 005856 440 MGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL 519 (673)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 519 (673)
..... |+......+...+...|++++|...++++... +|+...+..+..++...|+.++|..++++.++.++. +.
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~ 576 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DN 576 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cH
Confidence 77643 55544444555557899999999999987653 355555667777888999999999999999887643 33
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
..+..+...+...|++++|+..+++.++ ..|+ +..++.++.+.|++++|+..+++++...|. +...+..++.++
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4444455555667999999999999988 4455 345677788999999999999999998765 456777899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhccc
Q 005856 597 LAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (673)
...|++++|++.++++++.. +.+...+..+..++...|++++|....+...+..++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999864 3466777889999999999999988888877777543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-24 Score=212.11 Aligned_cols=583 Identities=14% Similarity=0.103 Sum_probs=442.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
..+.+.|.+.|..+++++ |++...+..-+.+....|++..|..+|..++...+.-.+.....+..++.+.|+.+.|+.
T Consensus 143 ~~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred CccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHH
Confidence 335799999999999987 788888877777888899999999999997665443333334445567789999999999
Q ss_pred HHHHHHHcCCccCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 113 IFDIMKQLGVERSVKSYDALFKLILRR---GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189 (673)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (673)
.|.+..+.+ |.++.++..|...-... ..+..++.++....... .-++...+.|.+.|...|+++.++.+...+..
T Consensus 221 a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 221 AFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 999999865 23333443333332233 34566777777665543 34777889999999999999999999999887
Q ss_pred CCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 190 RGIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (673)
Q Consensus 190 ~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (673)
.... .-...|-.+.++|-..|++++|...|.+..+....--+..+..+...+.+.|+++.+...|+.+.... +.+..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~e 377 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYE 377 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHH
Confidence 6321 12345778999999999999999999888775322123455678899999999999999999998762 44566
Q ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHH----hCCCCCChhh
Q 005856 268 TYTALLPGLCDAG----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI----RLSIPTEAGH 339 (673)
Q Consensus 268 ~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~ 339 (673)
|...+...|...+ ..+.|..++...++. .|.|...|..+...+....-+.. +..|..+. ..+.++.+..
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777665 567788888888775 46689999999888876554433 66666544 3455677888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHchh-ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKLVEKEI-ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (673)
.+.+...+...|++..|...|..+...-. ....+.+-.++..+-..+..+.-..++++.|.+.|..+.+..|.-...|.
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYL 534 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHH
Confidence 99999999999999999999999976621 11112221233333444566667788999999999999999888888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchhhHHHHHHHHhc-
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-HSPASSLFRSVMESLFE- 496 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 496 (673)
.++.+....+...+|...++.....+ ..++..+..+...+.....+..|.+-|....+.. ..+|......|...|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 88866666788999999999988753 3467778888888998888988988777766442 22566666666665432
Q ss_pred -----------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHc
Q 005856 497 -----------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG--SVPNFDSLLSVLSE 563 (673)
Q Consensus 497 -----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~ 563 (673)
.+..+.|+++|.++++.+++ |...-+.++-++...|++.+|..+|.++.+.. ..+.|..++.+|..
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 45678899999999988766 77777889999999999999999999999854 34458889999999
Q ss_pred cCChHHHHHHHHHHhcC-CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 564 KGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSD 625 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 625 (673)
+|++..|+++|+.+++. ..+.+......|++++++.|++.+|.+.+..++..........++
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 99999999999999986 445567888899999999999999999999988765443433333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-23 Score=218.15 Aligned_cols=602 Identities=9% Similarity=0.011 Sum_probs=416.1
Q ss_pred hHHHHHHhccCCCCCh-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC
Q 005856 8 TRLQNKIRALVPQFDH-NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG 86 (673)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 86 (673)
..++..++.-|.+... ..+..++...|++++|+..++.+.+.+ |.+...+..+..+ +++.+|..+++++.+..
T Consensus 65 ~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~ 138 (987)
T PRK09782 65 REFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQ 138 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhC
Confidence 3455555555555333 444568889999999999999999876 4555555544322 89999999999999876
Q ss_pred CCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHhCCC
Q 005856 87 VQWDEDMFEVLIES--------YGKKGIVQESVKIFDIMKQLGVERSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEGI 157 (673)
Q Consensus 87 ~~~~~~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~ 157 (673)
+. +..++..+... |.+.++...++ + .......|+..+.... ...|.+.|++++|+.++.++.+.++
T Consensus 139 P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 139 KA-CDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred CC-ChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 54 56666666665 66654444444 4 3332233345544444 8999999999999999999999863
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCHHHHH
Q 005856 158 EPTRHTYNVMLWGFFL-SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYT 235 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 235 (673)
.+......+..+|.. .++ +.+..++.. .+.-+...+..+...|.+.|+.++|.++++++...... |...+|.
T Consensus 214 -l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 214 -LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred -CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 355556667777777 466 777777553 23348889999999999999999999999997654211 3333332
Q ss_pred H------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 236 T------------------------------MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEV 285 (673)
Q Consensus 236 ~------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 285 (673)
- ++..+.+.++++.+.++.. +.|.......-..+....+...++
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHH
Confidence 1 2344555566664444321 234333321111222244677778
Q ss_pred HHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC---HHHHHHH-
Q 005856 286 QKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-S-IPTEAGHYGILIENFCKAEM---YDRAIKL- 359 (673)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~- 359 (673)
.+.+..+.+. .|.+......+.....+.|+.++|..+|...... + ...+......++..|...+. ...+..+
T Consensus 362 ~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 362 LRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 8888888775 3557788888888889999999999999998763 1 22334455577777777765 3333333
Q ss_pred -----------HHHHHHchhc---cCCCCCC-CC--chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHH
Q 005856 360 -----------LDKLVEKEII---LRPQSTL-DM--EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (673)
Q Consensus 360 -----------~~~~~~~~~~---~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (673)
..+..+.... .....+. ++ +...|..+..++.. ++.++|...+.+.....|. ......+..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-~~~~L~lA~ 517 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-AWQHRAVAY 517 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-hHHHHHHHH
Confidence 1111000000 0000011 22 45567777777766 8888999988888777654 333444555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (673)
.+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++.++.. +.+...+..+...+...|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 667899999999999998664 4455567777888999999999999999998754 2233333333444556799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHh
Q 005856 503 ASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCL 578 (673)
Q Consensus 503 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~ 578 (673)
|...+++.++..+ +...+..+..++.+.|++++|+..+++.+. ..|+ ...++.++...|++++|+..+++++
T Consensus 595 Al~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998765 577888999999999999999999999998 6677 3457778889999999999999999
Q ss_pred cCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 005856 579 GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSR 645 (673)
Q Consensus 579 ~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (673)
+..|. +...+..++.++...|++++|+..++++++.... ...+............++..|..-.+
T Consensus 671 ~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 671 KGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 98765 5667789999999999999999999999986532 23333345555666666666644333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-22 Score=188.87 Aligned_cols=436 Identities=15% Similarity=0.125 Sum_probs=324.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005856 95 EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS 174 (673)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (673)
..+..-.-+.|++..|++.-...-+.+ +.+....-.+-..+.+..+++.....-....+. .+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 334444456778888877766665543 222333333344555555666554433333332 233456777788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 005856 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT-MIKGYVAVERADDALRI 253 (673)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~ 253 (673)
|+++.|+..++.+.+...+ .+..|..+..++...|+.+.|...|.+..+. .|+.....+ +...+-..|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 8888888888888876433 5777888888888888888888888777764 355443332 33344456788888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 005856 254 FDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI 333 (673)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 333 (673)
|.+..+.. +--...|+.+...+...|+...|++.|++.+. ++|.-..+|..|...|...+.++.|...+.+.....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 77776642 22234677777777788888888888888877 466667788888888888888888888888877653
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
+.....+..+...|..+|..+.|+..|++.++.. | .-...|+.+..++-..|++.+|...+.+.....+..
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~----P-----~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ----P-----NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC----C-----CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 3445666777777888899999999998887643 1 123478999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVME 492 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 492 (673)
+.+.+.|...|...|.+++|..+|....+.. +--...++.|...|-+.|++++|+..+++.+. +.|+ ...++.+..
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGn 430 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGN 430 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcch
Confidence 9999999999999999999999999988742 22346788899999999999999999999886 6676 457888888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
.|-..|+.+.|...+.+++..++. -.+..+.|...|...|++.+|++-|++.++ ++||+
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 899999999999999999887654 356778899999999999999999999988 77773
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-22 Score=188.32 Aligned_cols=445 Identities=16% Similarity=0.160 Sum_probs=302.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHH
Q 005856 59 HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILR 138 (673)
Q Consensus 59 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 138 (673)
...+..-..+.|++.+|++--..+-.++.. +....-.+-..+....+.+.....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 444555566777787777766655444322 2233333333445555555544443333332 24455677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH-HHHHHHHHcCCChHHHHH
Q 005856 139 RGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTY-NTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 139 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~ 217 (673)
.|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 788888888888777653 225667777777777888888888887777765 4444433 233344445677788777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 005856 218 LFAEMKEKNIEPT-VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (673)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 295 (673)
.|.+..+. .|. ...|..|...+...|+...|+..|++.... .|+ ...|..+...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 77776654 222 356777777777788888888888877764 343 457777777888888888888887777663
Q ss_pred CCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCC
Q 005856 296 YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST 375 (673)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 375 (673)
.|....++..+...|..+|+++.|++.+++.++.. |.-+..|+.+..++-..|++.+|...|.+++.-. +
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~----p--- 351 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC----P--- 351 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC----C---
Confidence 56677777777777888888888888888877753 3335667888888888888888888888876543 1
Q ss_pred CCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHH
Q 005856 376 LDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD-ADAYIC 454 (673)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 454 (673)
.-..+.+.+...+...|.++.|..+|....+..+.-...++.|...|-.+|++++|...+++..+ +.|+ ...|+.
T Consensus 352 --~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 --NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred --ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 12346677778888888888888888888777766667788888888888888888888888776 3454 467777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (673)
+...|-..|+.+.|.+.+.+.+.. .|. ...++.+...|..+|+..+|+.-++..++..++ .+..+..++.++
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 888888888888888888887763 354 346677777788888888888888888776544 234444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-20 Score=182.11 Aligned_cols=561 Identities=13% Similarity=0.069 Sum_probs=403.6
Q ss_pred hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 005856 72 LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK 151 (673)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (673)
.+.|...|..+.+..++ |...+---.......+++..|+.+|.........-.+.....+...+.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 58898999888887543 44333333333456689999999999977643211122223334566788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 005856 152 MLSEGIEPTRHTYNVMLWGFFLS---LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE 228 (673)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (673)
.++.++ -++.++..|.-.-... ..+..+...+...-..+.. ++.+.+.|...|...|++..+..+...+......
T Consensus 225 alqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 225 ALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 987642 2333333332222222 3355666666666655433 7888899999999999999999999888765211
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHh
Q 005856 229 --PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN--AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSV 304 (673)
Q Consensus 229 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 304 (673)
.-...|..+.++|-..|++++|...|.+.... .++ ...+.-+.+.+.+.|+++.+...|+.+... .|++..+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~et 378 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYET 378 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHH
Confidence 12345888999999999999999999887765 344 345666788999999999999999999986 5768889
Q ss_pred HHHHHHHHhccC----ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCch
Q 005856 305 FMKLLGVQCKSG----HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA 380 (673)
Q Consensus 305 ~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 380 (673)
...+...|...+ ..+.|..++....... +.|...|-.+...+-. ++...++.+|..+...- ...+..+.+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L----~~~~~~ip~ 452 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDIL----ESKGKQIPP 452 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHH----HHcCCCCCH
Confidence 999999888775 5677888888877764 6677777777776655 44444477777765432 222333677
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLD------PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA- 449 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 449 (673)
...|.+...+...|.+..|...|......- .++ ..+-..+..++-..++.+.|.+.|..+.... |.-
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhH
Confidence 789999999999999999999999987761 222 2234556677777889999999999998852 443
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEA 528 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 528 (673)
..|..+.......++..+|...+...... ...++..+..+...+.....+.-|.+-|..+.+. ...+|......|...
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 34444443334457788999999998863 3455556666666788888888888888877766 333466665566655
Q ss_pred HHc------------CCCHHHHHHHHHHHHhCCCCCC--H--HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 529 LLM------------RGHVEEALGRIDLMMQSGSVPN--F--DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 529 ~~~------------~g~~~~A~~~~~~~~~~~~~p~--~--~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
|.+ .+..++|+++|.+++. ..|. + +.++-+++..|++.+|..+|.+..+.... ...+|..+
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNl 686 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNL 686 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeH
Confidence 442 2346889999998888 5565 2 34778889999999999999988775321 34567789
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 593 LDALLAAGKTLNAYSILFKIMEKGG-VTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+.+|...|+|..|++.|+.++++.. ..+...+..|.+++...|++.+|...........
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999998765 3456666779999999999999966554444444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-19 Score=187.85 Aligned_cols=428 Identities=15% Similarity=0.087 Sum_probs=279.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005856 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (673)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 243 (673)
+......+.+.|+++.|...|++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334455566667777777777776654 4455666666667777777777777777766643 2245566666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHH
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAAD 323 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 323 (673)
.|++++|+..|......+ ..+......++..+.. ..+........+. .|.+...+..+...+ ..........
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHHHH-HHccCCcchh
Confidence 777777776665554332 1111111111111111 1122222222222 121222222222211 1111111111
Q ss_pred HHHHHHhCCCCCCh-hhHHHHHHH---HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHH
Q 005856 324 VLKAMIRLSIPTEA-GHYGILIEN---FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (673)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (673)
.+....+. .+.. ..+..+... ....+++++|++.|+.+++.+ .........+..+...+...|++++|
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 11111111 1110 111111111 123467889999999886542 01112345677778888889999999
Q ss_pred HHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
...+++..+..|.....|..+..++...|++++|...++.+.+.+ +.+...|..+...+...|++++|...|++.++..
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999998888888889999999999999999999999988764 3467888899999999999999999999998753
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HH
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FD 555 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~ 555 (673)
+.+...+..+...+.+.|++++|+..|++.++..+. +...+..+..++...|++++|++.+++..+ ..|+ +.
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~ 505 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYM 505 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccc
Confidence 334566777788888999999999999999887543 677888899999999999999999999887 3332 11
Q ss_pred H---H----HHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 S---L----LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~---~----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
. + ...+...|++++|..++++++..++. +...+..+++++...|++++|++.++++.+..
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1 1 11223469999999999999988654 34567889999999999999999999988754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-18 Score=182.89 Aligned_cols=450 Identities=15% Similarity=0.059 Sum_probs=236.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005856 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209 (673)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 209 (673)
......+.+.|++++|+..|++.+.. .|+...|..+..+|...|++++|...++...+.... +...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 33445556666666666666666553 345555666666666666666666666666655322 455566666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD--VKPNAVTYTALLPGLCDAGKMVEVQK 287 (673)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~ 287 (673)
|++++|..-|......+...+. ....++..+.. ..+........+.. ..|...........+ .......
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 278 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRPA 278 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcchh
Confidence 6666666665554433111111 11111111111 11111122221111 011111111111111 1111111
Q ss_pred HHHHHHHCCCCCCcHHhHHHHHHHH---hccCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 288 VLREMVERYIPPKDNSVFMKLLGVQ---CKSGHLNAAADVLKAMIRLS--IPTEAGHYGILIENFCKAEMYDRAIKLLDK 362 (673)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 362 (673)
-+..... ..+.....+..+...+ ...+++++|...|+...+.+ .+.....+..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 1111111111111111 22356666666666666543 122344555566666667777777777777
Q ss_pred HHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 363 LVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
.++.. + .....|..+...+...|++++|...|+.+.+..+.++.++..+...+...|++++|...|+...+
T Consensus 357 al~l~----P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 357 SIELD----P-----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHcC----C-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65432 1 12335566666666777777777777777766666677777777777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH---
Q 005856 443 RGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--- 519 (673)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 519 (673)
.. +.+...+..+...+.+.|++++|+..+++.++. .+.+...+..+...+...|++++|+..|++.++..+..+.
T Consensus 428 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 428 LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 53 224556666677777777777777777777653 2334556666667777777777777777777765332111
Q ss_pred --H-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 520 --D-LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 520 --~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
. .++.....+...|++++|.+++++.+. ..|+ +..++..+...|++++|+.+|+++++..... ..
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~-~e----- 577 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-GE----- 577 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH-HH-----
Confidence 1 112222223335777777777777666 3444 2346666677777777777777777654221 11
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 005856 593 LDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
......+.+|..+..+..++
T Consensus 578 ---~~~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 578 ---LVQAISYAEATRTQIQVQED 597 (615)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 12333455666665554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=188.11 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=191.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC---HHHHHHHHHHHHh
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIESYGK 103 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 103 (673)
.......|+++.|+..|+.+.+.+ |.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334556677777777777777765 55666777777777777777777777777766432211 2445666677777
Q ss_pred cCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 005856 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR----HTYNVMLWGFFLSLKLET 179 (673)
Q Consensus 104 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 179 (673)
.|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776643 345566777777777777777777777777665433221 133445556666777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
|...|+++.+... .+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777766532 234556666667777777777777777776543222234566666777777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc---cCChHHHHHHHHHHHhCCCCCC
Q 005856 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK---SGHLNAAADVLKAMIRLSIPTE 336 (673)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 336 (673)
. .|+...+..+...+.+.|++++|..+++++++. .| +...+..++..+.. .|+.+++..+++.+.+.++.|+
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 4 355555566666667777777777777766664 34 44455555554443 3466666666666666555444
Q ss_pred hh
Q 005856 337 AG 338 (673)
Q Consensus 337 ~~ 338 (673)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 43
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-17 Score=164.09 Aligned_cols=610 Identities=15% Similarity=0.104 Sum_probs=379.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
.+.+...|+.+.|.+++..+.+++ |..+.+|..+..+|-..|+..++...+-.+-...+ -|...|..+.......|+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhccc
Confidence 457778899999999999999998 88999999999999999999999988776544433 377999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN----VMLWGFFLSLKLETAIR 182 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~ 182 (673)
++.|.-.|.+..+.. |++....-.-+..|-+.|+...|.+-|.++....++.|..-+. .++..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999876 4555555566788899999999999999998874433332222 33556667777799999
Q ss_pred HHHHHHhCC-CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---------------------------CHHHH
Q 005856 183 FFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP---------------------------TVISY 234 (673)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~ 234 (673)
.++.....+ -..+...++.++..+.+...++.+......+......+ +...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 999887732 23356678888999999999999988887776522222 22221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHH
Q 005856 235 TTMIKGYVAVERADDALRIFDEMKSFDV--KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (673)
-++-++.+....+....+........+ .-+...|.-+..++...|.+.+|+.++..+....... +..+|..+..+|
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCY 459 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHH
Confidence 122233333444444444444444443 3345678889999999999999999999998875444 678999999999
Q ss_pred hccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHc
Q 005856 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392 (673)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (673)
...|..+.|...|+.++... |.+...--.|...+.+.|+.++|.+.++.+...+....+.....|+........+.+..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999999874 55666777788899999999999999998753321111233344555544445555666
Q ss_pred cCCHhHHHHHHHHHHHcC-----------------------CCCHH----------------------------------
Q 005856 393 NGQTGKAEIFFRQLMKKG-----------------------VLDPV---------------------------------- 415 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~-----------------------~~~~~---------------------------------- 415 (673)
.|+.++-..+...++... +....
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 666655443333332211 00001
Q ss_pred ---------hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 005856 416 ---------AFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRDA---DAYICLIESYLRKGEPADAKTALDSMIED-GH 480 (673)
Q Consensus 416 ---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 480 (673)
.+..++..+++.+.+++|..+...+..... .++. ..-...+.+.+..+++..|...++.|+.. ++
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 112233344444455555544444433210 0000 11222333344445555555555554432 11
Q ss_pred --CCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHH
Q 005856 481 --SPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFDS 556 (673)
Q Consensus 481 --~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~ 556 (673)
.|. ...|+..+..+.+.|+-.--.+.+..+.......+..........+...+.+.-|+..+-++.. .+..|-...
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl 778 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL 778 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence 011 1122222222333332222222222222221111122222222333455667888877766655 233343221
Q ss_pred -HHHHH-----H-----ccCChHHHHHHHHHHhcCC-CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----
Q 005856 557 -LLSVL-----S-----EKGKTIAAVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----- 619 (673)
Q Consensus 557 -~~~~~-----~-----~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~----- 619 (673)
++.++ . +.-..-.+..++++-.+.. +...-++...++++|...|=..-|..+|++++.....+
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~ 858 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPK 858 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccccccc
Confidence 11111 1 1223345555655444432 22234555679999999999999999999999864221
Q ss_pred ----C---HHHHHHHHHHHHhcCCcchHHHHH
Q 005856 620 ----D---WKSSDKLIAGLNQEGNTKQADILS 644 (673)
Q Consensus 620 ----~---~~~~~~l~~~~~~~g~~~~a~~~~ 644 (673)
+ -.++ .|.-.|.++|+...|..+.
T Consensus 859 ~d~~dLrkeAA~-NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 859 EDNYDLRKEAAY-NLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred CCcccHHHHHHh-hhhhhhccCCcHHHHHHHH
Confidence 1 1122 2566799999999996554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-19 Score=183.03 Aligned_cols=361 Identities=11% Similarity=0.044 Sum_probs=169.8
Q ss_pred hcCCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 31 HGAKNSEHALQFFRWVERAGLF-NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQE 109 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 109 (673)
.++.+|+..--+|....+...- ..+..-...++..+.+.|++..|..+++......+. +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3444555544444444333210 111222333444445555555555555555544333 33333444444445555555
Q ss_pred HHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189 (673)
Q Consensus 110 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (673)
|...|+++.+.. |.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555555555433 2334445555555555555555555555554431 22334444555555555555555555555444
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005856 190 RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY 269 (673)
Q Consensus 190 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (673)
.... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|+..++.+.... +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3222 12222222 2244455555555555555443222222233333444555555555555555555432 2234444
Q ss_pred HHHHHHHHcCCCHHH----HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 005856 270 TALLPGLCDAGKMVE----VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (673)
Q Consensus 270 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (673)
..+...+...|++++ |...+++++.. .|++..++..+...+...|++++|...++++.... +.+...+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445555555555543 45555555542 34455555555555555555555555555555442 233344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCch-hhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
++.+.|++++|+..|+.+.+.. |+. ..+..+..++...|+.++|...|++..+..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~----------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK----------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5555555555555555554321 111 222333444555555555555555555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-18 Score=182.53 Aligned_cols=404 Identities=13% Similarity=0.065 Sum_probs=237.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005856 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (673)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 242 (673)
...-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+|++..... +.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33344444445555555555555554321 2233344555555555555555555555544431 223334444445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 322 (673)
..|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++++. .|++...+..+..++...|..+.|+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHH
Confidence 5555555555555554431 22223 444444445555555555555555543 3334444444444444444444444
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHH-----HccCCH-
Q 005856 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHL-----CHNGQT- 396 (673)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~- 396 (673)
..++.+.. .|+ +. ... ........+... ...+++
T Consensus 171 ~~l~~~~~---~p~---~~-------------~~l---------------------~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 171 GAIDDANL---TPA---EK-------------RDL---------------------EADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHhCCC---CHH---HH-------------HHH---------------------HHHHHHHHHHhhcccccChhHHHH
Confidence 44443332 111 00 000 000011111111 122233
Q ss_pred --hHHHHHHHHHHHcCC--CCH-HhHH----HHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChH
Q 005856 397 --GKAEIFFRQLMKKGV--LDP-VAFN----NLIRGHSKEGNPDSAFEIVKIMGRRGVP-RDADAYICLIESYLRKGEPA 466 (673)
Q Consensus 397 --~~a~~~~~~~~~~~~--~~~-~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 466 (673)
+.|+..++.+.+..+ |+. ..+. ..+.++...|++++|...|+.+.+.+.+ |+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 678888888886531 211 1111 1133456779999999999999886532 322 2222577899999999
Q ss_pred HHHHHHHHHHHcCCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV-----------KEN---LDLVAKILEAL 529 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 529 (673)
+|...++++.+..... .......+..++...|++++|..+++.+.+..+ .|+ ...+..++..+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999987643111 123455666678899999999999999987643 123 23455677788
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
...|++++|+++++++.. ..|+ ...++..+...|++++|++.+++++...|. +...+..++..+.+.|++++|
T Consensus 370 ~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 370 KYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999887 5566 345667777899999999999999998754 344566788899999999999
Q ss_pred HHHHHHHHHcC
Q 005856 606 YSILFKIMEKG 616 (673)
Q Consensus 606 ~~~~~~~~~~~ 616 (673)
.+.++++++..
T Consensus 447 ~~~~~~ll~~~ 457 (765)
T PRK10049 447 DVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhC
Confidence 99999999864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-18 Score=179.12 Aligned_cols=334 Identities=9% Similarity=0.004 Sum_probs=271.1
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 23 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
...+...+.+.|+++.|+.+++..+... |.+..++..++.++...|+++.|...++++....+. +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3445557778999999999999999887 677888888888888999999999999999887544 6778888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 182 (673)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++.+....+. +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998864 456778888999999999999999999988765433 33333333 34778899999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 005856 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD----ALRIFDEMK 258 (673)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~ 258 (673)
.++.+......++...+..+...+...|++++|...+++..... +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99998876444455555666778889999999999999998764 3467778889999999999885 799999988
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChh
Q 005856 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG 338 (673)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (673)
+.. +.+...+..+...+...|++++|...+++++.. .|++..++..+..++.+.|++++|...++.+...+ +.+..
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 763 445678888899999999999999999999885 67688888899999999999999999999998763 22233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 339 HYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
.+..+..++...|+.++|+..|+++++..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34445677889999999999999987654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=180.88 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=179.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--cHHhHHHHHHHHhccCChH
Q 005856 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHLN 319 (673)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 319 (673)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+......+. ....+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555554432 22333444444455555555555555555444311110 1123445555555555666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHH
Q 005856 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (673)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (673)
.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.. +..........+..+...+...|++++|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 6666555555432 3344555566666666666666666666664432 1100000112344555666677777777
Q ss_pred HHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
...++++.+..+.+...+..++..+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777766666666777777788888888888888888776432222456677777888888888888888887764
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++.+.++.|+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 355556677777778888888888888877765 3556666666655543 4577788888887776554444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-18 Score=180.79 Aligned_cols=422 Identities=12% Similarity=0.065 Sum_probs=227.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 133 (673)
.++.-..-.+.+....|+.++|++++....... +.+...+..+..++...|++++|..+|++..+.. |.+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 334444444444445555555555555444311 2233344444445555555555555555544432 22333444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 005856 134 KLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMD 213 (673)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 213 (673)
..+...|++++|+..+++..+.. +.+.. +..+..++...|++++|...++++.+..+. +...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 44555555555555555554431 12233 444444444555555555555555544222 3333333444444445555
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHH
Q 005856 214 EAEKLFAEMKEKNIEPTV------ISYTTMIKGYV-----AVERA---DDALRIFDEMKSF-DVKPNAV-TYT----ALL 273 (673)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~ll 273 (673)
.|...++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 55554443332 1110 01111111111 11223 5667777776643 1122221 111 113
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCC-CCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHh
Q 005856 274 PGLCDAGKMVEVQKVLREMVERYIP-PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT---EAGHYGILIENFCK 349 (673)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 349 (673)
.++...|++++|+..|+.+.+.+.. |.+ ....+...+...|++++|+..|+.+....... .......+..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 3445667888888888887776422 212 22334667788888888888888876643111 12345556667788
Q ss_pred cCCHHHHHHHHHHHHHchhccCC---CCCCCCch---hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHH
Q 005856 350 AEMYDRAIKLLDKLVEKEIILRP---QSTLDMEA---SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRG 423 (673)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (673)
.|++++|..+++.+.+....... .....|+. ..+..+...+...|+.++|+..++++....|.++..+..++..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888654310000 00112221 2344566677778888888888888887777778888888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH
Q 005856 424 HSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR 488 (673)
Q Consensus 424 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 488 (673)
+...|++++|++.++.+.... +.+...+...+..+...|++++|..+++++++. .|+.....
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~ 464 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQ 464 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 888888888888888877753 234566666677777888888888888888763 35544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-15 Score=139.45 Aligned_cols=581 Identities=12% Similarity=0.071 Sum_probs=345.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIF 114 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 114 (673)
+...|..+++...+.+ |.++..|..-.+.--..|.+..|..+...--+. ++.+..+|.--+ +....+.|..+.
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 7788999999999998 677777777777777778888888776643221 233455553332 333444455555
Q ss_pred HHHHHcCCccCHhhHHHHHHH---------------------------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 115 DIMKQLGVERSVKSYDALFKL---------------------------ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (673)
Q Consensus 115 ~~~~~~g~~~~~~~~~~l~~~---------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (673)
....+.- |.++..|-..... -....+.+.|.-++.+..+. ++.+.. |
T Consensus 339 A~Avr~~-P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~d----L 412 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMD----L 412 (913)
T ss_pred HHHHHhC-CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHH----H
Confidence 4444421 2333333222211 12223444455555555443 222222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHh
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM----KEKNIEPTVISYTTMIKGYVA 243 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~ 243 (673)
..++++..-++.|..++....+. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|..=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 23344555566666666666554 3445556655555555566666666665543 234555566666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHH
Q 005856 244 VERADDALRIFDEMKSFDVKPN--AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA 321 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 321 (673)
.|..-.+..+.......|+.-. ..||..-...|.+.+.++-+..+|...++ +.|.+...|......--..|..+..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666655554332 23566666666666666666666666665 3454666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHH
Q 005856 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (673)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (673)
..+|.++... ++.....|-.....+-..|+...|..++..+.+.. + .+...|-+.+.......+++.|..
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~----p-----nseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN----P-----NSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----C-----CcHHHHHHHHHHhhccccHHHHHH
Confidence 6666666654 23344444444555555667777776666665443 1 134456666666666667777777
Q ss_pred HHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005856 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS 481 (673)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 481 (673)
+|.+.... .++..+|..-+...-..++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+. .+
T Consensus 640 llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 640 LLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 76666554 234445555555555556667777777666654 2223345666666666666666666666655442 22
Q ss_pred CchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHH
Q 005856 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSL 557 (673)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 557 (673)
-....|..+...-.+.|..-.|..++++..-.+++ +...|-..++.-.+.|+.+.|..+..+.++ --|+ |...
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHH
Confidence 23445555555556667777777777777776665 666777777777777777777776666555 2233 2333
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (673)
+....+-++.-.....+++ ++.++...-.++..++...+++.|.+.|.+.+..+. ..-..|..+..-+..+|.-
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCH
Confidence 3333344444444444442 344667777888999999999999999999998653 2334556677888899998
Q ss_pred chHHHHHHHHHhhhcc
Q 005856 638 KQADILSRMIRGEMSR 653 (673)
Q Consensus 638 ~~a~~~~~~~~~~~~~ 653 (673)
++-..+.++...-++.
T Consensus 868 ed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 868 EDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHhccCCC
Confidence 8888888887766533
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-16 Score=165.53 Aligned_cols=448 Identities=12% Similarity=0.068 Sum_probs=186.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcC
Q 005856 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG 140 (673)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 140 (673)
.-+....+.|+++.|+..|+++.+..+.-...++ .++..+...|+.++|+..+++.... -+........+...+...|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 3333444555555555555555544322111222 4444555555555555555555420 0111112222233444455
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHH
Q 005856 141 RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFA 220 (673)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 220 (673)
++++|+++|+++.+..+ -+...+..++..+...++.++|+..++.+... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 55555555555555421 23344444445555555555555555555544 2333333223223323344434555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 005856 221 EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (673)
Q Consensus 221 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 300 (673)
++.+.. +.+...+..++.+..+.|-...|.++..+- |+..+-...... +.+.+.+..+- ...+.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~ 257 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRM----AVLPT 257 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhh----ccccc
Confidence 555442 223444444455555555555554443321 111111100000 00111111110 00000
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhC-C-CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-S-IPTEAGHY----GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQS 374 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (673)
... . .+.--.+.|+.-++.+... + .|+....| .-.+-++...|++.++++.|+.+ +..
T Consensus 258 ~~~--~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l--------~~~ 321 (822)
T PRK14574 258 RSE--T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM--------EAE 321 (822)
T ss_pred ccc--h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--------hhc
Confidence 000 0 0000123344444444331 1 11111111 12234555666666666666666 333
Q ss_pred CCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---
Q 005856 375 TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--- 445 (673)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 445 (673)
+.+....+-..+.++|...+++++|+.+++.+.... +++......|.-++...+++++|..+++.+.+...
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 333344455666666666666666666666665432 11222235556666666666666666666654211
Q ss_pred --------CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 005856 446 --------PRDA---DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG 514 (673)
Q Consensus 446 --------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 514 (673)
.|++ ..+..++..+...|+..+|.+.++.+.... +-|..........+...|.+.+|...++.+....
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 0111 112223333444444444444444443321 2233334444444444444444444443333332
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 515 VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+. +.......+.++...|++++|..+.+.+.+
T Consensus 481 P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 481 PR-SLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred Cc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 22 233333344444444444444444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-16 Score=162.00 Aligned_cols=447 Identities=12% Similarity=0.064 Sum_probs=325.6
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
+..+.|+++.|+..|+.+++.+ |.++.....++.++...|+.++|+..+++.... .+.+......+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 6668999999999999999887 444333338888889999999999999999832 2234555555577889999999
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
+|.++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999876 455677778888999999999999999999775 4555555444444445667767999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHHHH
Q 005856 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISY------TTMIKGY-----VAVER---ADDALRIF 254 (673)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~-----~~~~~---~~~a~~~~ 254 (673)
+.... +...+..+..+..+.|-...|.++..+-... +.+....+ ..+++.- ...++ .+.|+.-+
T Consensus 197 ~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 98533 6778888889999999999998877654321 11111111 1111111 01122 34455555
Q ss_pred HHHHh-CCCCCCH-HH----HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHH
Q 005856 255 DEMKS-FDVKPNA-VT----YTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 255 ~~~~~-~~~~~~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
+.+.. .+-.|.. .. ..-.+-++...|++.++++.++.+...+.+. ...+...+..+|...+..++|..++..+
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 55543 1222332 22 2234557788999999999999999887554 4568899999999999999999999999
Q ss_pred HhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccC-----CCCCCCCchh-hHHHHHHHHHccCCHh
Q 005856 329 IRLS-----IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR-----PQSTLDMEAS-SYNPMIQHLCHNGQTG 397 (673)
Q Consensus 329 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~~~~~~~ 397 (673)
.... .+++......|.-+|...+++++|..+++.+.+...... +.....||-. .+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7653 123344457788999999999999999999976421000 0111122222 2344566778899999
Q ss_pred HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
+|++.++.+....|.|+.....+...+...|.+.+|...++.+... -+-+..+....+.++...+++.+|..+.+...+
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999998888999999999999999999999999999777665 233567777888888889999999999988886
Q ss_pred cCCCCchhhH
Q 005856 478 DGHSPASSLF 487 (673)
Q Consensus 478 ~~~~~~~~~~ 487 (673)
. .|+....
T Consensus 513 ~--~Pe~~~~ 520 (822)
T PRK14574 513 R--SPEDIPS 520 (822)
T ss_pred h--CCCchhH
Confidence 4 3554433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-15 Score=146.38 Aligned_cols=584 Identities=14% Similarity=0.145 Sum_probs=400.2
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 23 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
...+..+....|+...++..+--+...+ |.+...|..+.....+.|++++|.-+|.+.++..++ +....---...|-
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQ 252 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHH
Confidence 4666778889999999998877776555 788899999999999999999999999999988654 5555556677899
Q ss_pred hcCCHHHHHHHHHHHHHcCCccCHhhHHH----HHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERSVKSYDA----LFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKL 177 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 177 (673)
+.|+...|..-|.++.+...+.+..-... .+..+...++-+.|.+.++..... +-..+...++.++..+.+...+
T Consensus 253 ~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~ 332 (895)
T KOG2076|consen 253 KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS 332 (895)
T ss_pred HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence 99999999999999998653223222333 345566677779999988887653 2233455677888888899999
Q ss_pred HHHHHHHHHHHhCCC---------------------------CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC--CC
Q 005856 178 ETAIRFFEDMKSRGI---------------------------SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN--IE 228 (673)
Q Consensus 178 ~~a~~~~~~~~~~~~---------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~ 228 (673)
+.+......+..+.. .++..+ ..++-++......+....+...+...+ +.
T Consensus 333 d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 333 DKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred HHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 999888877765222 222222 123334444455555555555555554 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHH
Q 005856 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKL 308 (673)
Q Consensus 229 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (673)
-+...|.-+..++...|++.+|+.+|..+......-+...|..+..+|...|.++.|.+.|+.++.. .|++..+...|
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~L 489 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITL 489 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhH
Confidence 4566788899999999999999999999988755566789999999999999999999999999985 67788999999
Q ss_pred HHHHhccCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccC---C-----
Q 005856 309 LGVQCKSGHLNAAADVLKAMIRL--------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR---P----- 372 (673)
Q Consensus 309 ~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~----- 372 (673)
...+.+.|+.++|.+.+..+..- +..|+..........+.+.|+.++-+.....++......+ +
T Consensus 490 asl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~ 569 (895)
T KOG2076|consen 490 ASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKK 569 (895)
T ss_pred HHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999986532 2344445555566677788887776555544443221000 0
Q ss_pred ------C-----------------------------------------CCCCCch--hhHHHHHHHHHccCCHhHHHHHH
Q 005856 373 ------Q-----------------------------------------STLDMEA--SSYNPMIQHLCHNGQTGKAEIFF 403 (673)
Q Consensus 373 ------~-----------------------------------------~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~ 403 (673)
. .+...+. ..+.-++.++++.+++++|+.+.
T Consensus 570 r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv 649 (895)
T KOG2076|consen 570 RRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVV 649 (895)
T ss_pred HHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0 0000000 11244566788899999999999
Q ss_pred HHHHHcC--CCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHhC-CC---CCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 404 RQLMKKG--VLDPV----AFNNLIRGHSKEGNPDSAFEIVKIMGRR-GV---PRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 404 ~~~~~~~--~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
..+.... ..+.. .-...+.+.+..+++..|...++.|... +. ..-...|+...+.+.+.++-.--.+.+.
T Consensus 650 ~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~ 729 (895)
T KOG2076|consen 650 FTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIM 729 (895)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888775 22222 3355667778899999999999998864 11 1134566766666666665544444444
Q ss_pred HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc--------CCCHHHHHHHHHH
Q 005856 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKILEALLM--------RGHVEEALGRIDL 544 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~ 544 (673)
........-+..........+..++.+..|+..+-++....+. |-....-.+...... +-.+-.++.++++
T Consensus 730 ~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~R 809 (895)
T KOG2076|consen 730 RLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKR 809 (895)
T ss_pred HHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4433221111222222334456788999999988888887655 322222111111111 1124556667766
Q ss_pred HHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC---------C---hHhHHHHHHHHHhcCChHHHHHH
Q 005856 545 MMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII---------D---LASYEKVLDALLAAGKTLNAYSI 608 (673)
Q Consensus 545 ~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~---~~~~~~l~~~l~~~g~~~~A~~~ 608 (673)
..+....-+ +-.++.+|...|-..-|+.++++++...|.+ + ...| .+.-+|.++|+..-|.++
T Consensus 810 Y~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~-NL~LIY~~SGn~~lArqi 888 (895)
T KOG2076|consen 810 YKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY-NLHLIYKKSGNMQLARQI 888 (895)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh-hhhhhhccCCcHHHHHHH
Confidence 665322212 4468889999999999999999999875432 1 3344 577889999999999999
Q ss_pred HHHHH
Q 005856 609 LFKIM 613 (673)
Q Consensus 609 ~~~~~ 613 (673)
+++-+
T Consensus 889 l~kyl 893 (895)
T KOG2076|consen 889 LEKYL 893 (895)
T ss_pred HHhhc
Confidence 88743
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-13 Score=131.27 Aligned_cols=496 Identities=11% Similarity=0.065 Sum_probs=392.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+...|-..+ ...+.++|.-++.+..+. ++.+...|. +|.+..-|+.|..++.+..+. ++.+...|..-..
T Consensus 379 sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~ 448 (913)
T KOG0495|consen 379 SVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAK 448 (913)
T ss_pred hHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHH
Confidence 444444333 334556677777777764 234444444 456677889999999998776 6778888887777
Q ss_pred HHHhcCCHHHHHHHHHHH----HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 005856 170 GFFLSLKLETAIRFFEDM----KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP--TVISYTTMIKGYVA 243 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 243 (673)
.--..|+.+.+.+++++. ...|+..+...|..=...|-..|..-.+..+......-|+.. -..+|+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 777889999998888764 456888889999888888999999999999999988777542 24588888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHH
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAAD 323 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 323 (673)
.+.++-|..+|....+. .+.+...|......--..|..++...++++++.. .|.....|.....-+-..||...|..
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999988875 2445567777776667789999999999999886 45577788888888889999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHH
Q 005856 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFF 403 (673)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 403 (673)
++..+.+.. +.+...|-..+.......+++.|..+|.+... ..|+...|..-+...-..+..++|.+++
T Consensus 606 il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~----------~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 606 ILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS----------ISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc----------cCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 999998875 44777888888888999999999999999843 3467778887777777889999999999
Q ss_pred HHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 005856 404 RQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (673)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 483 (673)
+..++..+.-...|..+.+.+-+.++.+.|...|..-.+. ++-.+-.|..+...--+.|++-.|..++++..-.+ +-+
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 9999998888889999999999999999999998876664 34456678888888888899999999999998654 456
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLS 562 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~ 562 (673)
...|...+..-.+.|+.+.|..+..++++.-+. +...|..-+....+.++-..+++.+++.. ..|. ...+...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHH
Confidence 778889999999999999999999999887433 56677777776666666556665555443 4455 345666677
Q ss_pred ccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
...+++.|.+.|.++++.++.. ...|.....-+...|.-++-.+++.++....
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~-GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDN-GDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCcc-chHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 8889999999999999987653 3445556677788999999999999888654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-14 Score=131.45 Aligned_cols=421 Identities=17% Similarity=0.217 Sum_probs=274.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHc--CCHHHH-HHHHHHHHhCC---------------
Q 005856 95 EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRR--GRYMMA-KRYFNKMLSEG--------------- 156 (673)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A-~~~~~~~~~~~--------------- 156 (673)
+.++. ...+|.+.++.-+|+.|.+.|++.+...-..|...-+-. .++--| .+.|-.|.+.|
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 44443 356788999999999999988888877766665543221 111111 11111111110
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005856 157 ----IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (673)
Q Consensus 157 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (673)
.+.+..+|..+|.++++....+.|.+++++......+.+..+||.+|.+-+-..+ .+++.+|....+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchH
Confidence 2446778999999999999999999999999888788899999999977543322 78899999988999999
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHC-------CCCCC
Q 005856 233 SYTTMIKGYVAVERADD----ALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE-VQKVLREMVER-------YIPPK 300 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~-------~~~~~ 300 (673)
|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..++..+++.++..+ +..++.++... -+.|.
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998764 56788899999999999999999999998888644 45555555442 24566
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS----IPTE---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
+...|...+..|.+..+.+.|..+..-..... +.|+ ..-|..+....|+....+.-...|+.+ -.
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--------VP 426 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--------VP 426 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cc
Confidence 77888888899988889888888776654421 2232 223556677778888888888889888 44
Q ss_pred CCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--
Q 005856 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD-- 450 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 450 (673)
...-|+..+...++++....+.++-.-+++.++..-| ..+..... +++..+.+....|+..
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPER 490 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHH
Confidence 4455777777788888888888888888887777654 22222222 2222232222222211
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 005856 451 -AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV----KENLDLVAKI 525 (673)
Q Consensus 451 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l 525 (673)
-+.....-++ ..-.+.....-.++.+.. ......+.++-.+.+.|..++|.+++..+.+.+- .|.......+
T Consensus 491 ~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 491 EQLQVAFAKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 1111111111 011111122223344333 3334455555566777777777777777654421 2233333455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..-.+.+++..|+..++-+..
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 5556666677777777776654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-13 Score=125.35 Aligned_cols=438 Identities=9% Similarity=0.076 Sum_probs=307.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+...|.....--..++++..|..+|++.+..+ ..+...|...+..=+++.....|..+|++.+..=+..| ..|-..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44455555555556677778888888887755 45666777777777788888888888888766422222 23334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 249 (673)
.--..|++..|.++|+.-.+. .|+...|.+.+..-.+.+.++.|..++++..- +.|++.+|.-..+.-.+.|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 444568888888888887765 67888888888888888888888888888765 35788888777777778888888
Q ss_pred HHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHH-
Q 005856 250 ALRIFDEMKSFDVKPNA----VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV- 324 (673)
Q Consensus 250 a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~- 324 (673)
+..+|+...+. -.|. ..+.++..--.+...++.|.-+|+-.++.-........|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 88888777653 1122 2333333333456667778888887777532221244555555555556665444433
Q ss_pred -------HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCc--hhhHHHHHH-------
Q 005856 325 -------LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME--ASSYNPMIQ------- 388 (673)
Q Consensus 325 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~------- 388 (673)
++.+++.+ +.|-.+|-..+..--..|+.+...++|++++... +|- ...|...|-
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv---------pp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV---------PPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC---------CchhHHHHHHHHHHHHHHHHH
Confidence 33344433 5666777777777777888888889998886432 221 112222211
Q ss_pred -HHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH----HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 389 -HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH----SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 389 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
.-....+++.+.++++..++.-|....||..+--+| .++.++..|.+++..+.. ..|...+|...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 113468999999999999987666666766654444 467899999999988774 5789999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
+++....++++.++.+ +.+..+|......-...|+.+.|..+|+-+++.. .......|...+..-...|.++.|..+|
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999854 3466788888887788999999999999998873 2333456777777777899999999999
Q ss_pred HHHHhC
Q 005856 543 DLMMQS 548 (673)
Q Consensus 543 ~~~~~~ 548 (673)
+++++.
T Consensus 531 erlL~r 536 (677)
T KOG1915|consen 531 ERLLDR 536 (677)
T ss_pred HHHHHh
Confidence 999983
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-13 Score=125.42 Aligned_cols=424 Identities=12% Similarity=0.119 Sum_probs=190.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
++++..|..+|+.++..+ ..+...|...+.+-.++...++|..+++..+..=+. -...|...+-.--..|+...|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHH
Confidence 344555555555555544 344455555555555555555555555555443211 12233333333334455555555
Q ss_pred HHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 005856 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR-G 191 (673)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 191 (673)
+|++..+ ..|+..+|.+.|..=.+....+.|..+|++..- ++|++.+|-...+.--+.|....+..+++.+.+. |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 5555554 245555555555555555555555555555543 3455555555555555555555555555555432 0
Q ss_pred C-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 005856 192 I-SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRI--------FDEMKSF 260 (673)
Q Consensus 192 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~ 260 (673)
- ..+...+.+...--.++..++.|.-+|.-...+ ++.+ ...|..+...--+-|+.....+. ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 001222333333333444555555555554443 1111 12222222222222332221111 1222222
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCc-HHhHHHHHHH--------HhccCChHHHHHHHHHHHhC
Q 005856 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGV--------QCKSGHLNAAADVLKAMIRL 331 (673)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~ 331 (673)
+ +-|-.+|-..++.....|+.+...++|+.++..- +|.. ...|...+-. -....|.+.+.+++...++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 1 3344455555555555555555555555555431 2211 1111111111 11234555555555555442
Q ss_pred CCCCChhhHHHHHHHH----HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 005856 332 SIPTEAGHYGILIENF----CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (673)
Q Consensus 332 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (673)
+|....||..+--.| .++.+...|.+++..++ |.-|-..++...|..-.+.++++.+..++++.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333443332222 23344555555555442 122344445555555555555555555555555
Q ss_pred HcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
+-+|.+..+|......-...|+.+.|..+|..+.+.. .......|...|+.-...|.++.|..+++++++
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554431 111223344444444455555555555555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-14 Score=127.84 Aligned_cols=462 Identities=14% Similarity=0.210 Sum_probs=297.8
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHhcCChHHH-HHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIE--ILGRVGKLNHA-RCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
+.++|....+.-+|+.+...+ .+.+...-..+++ +|..+.++--| .+.|-.|.+.|-. +..+| +.|+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~ 194 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGA 194 (625)
T ss_pred HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------cccc
Confidence 345677777777888887766 5666665555443 23333333322 2333344443322 22222 4444
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+.+ -+|+.. +.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+
T Consensus 195 vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~E 263 (625)
T KOG4422|consen 195 VAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAE 263 (625)
T ss_pred HHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHH
Confidence 433 333332 46778999999999999999999999999987777889999999998654332 3788999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh--
Q 005856 187 MKSRGISLDVVTYNTMINGYNRFKKMDEA----EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD-ALRIFDEMKS-- 259 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~-- 259 (673)
|....+.||..|+|+++.+.++.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 99999999999999999999999988765 5677889999999999999999999999888754 4455555543
Q ss_pred --CCCC---C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCC--CcHHhHHHHHHHHhccCChHHHHHHHHH
Q 005856 260 --FDVK---P-NAVTYTALLPGLCDAGKMVEVQKVLREMVERY----IPP--KDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (673)
Q Consensus 260 --~~~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (673)
..++ | |...|...+..|.+..+.+.|.++..-+.... +.| .....|..+....++....+.....|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 2 44567778888889999998888876654321 111 1233466677778888889999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 005856 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (673)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (673)
+.-.-.-|+..+...++++..-.+.++-.-+++.+++.-+. +++ -+.-++++..+.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh-------------t~r-----------~~l~eeil~~L~ 479 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH-------------TFR-----------SDLREEILMLLA 479 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh-------------hhh-----------HHHHHHHHHHHh
Confidence 98887788899999999998888999888888888854331 111 122233444444
Q ss_pred HcC-CCCHH---hHHHHHHHHHhcCChhHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C
Q 005856 408 KKG-VLDPV---AFNNLIRGHSKEGNPDSAFE-IVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH-S 481 (673)
Q Consensus 408 ~~~-~~~~~---~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 481 (673)
... .|+.. -+.....-|+ -++.++.+ .-.++.+.. ......+.++-.+.+.|+.++|.+++.-+.+.+. .
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 333 22111 1222222111 12222222 223344433 3445666677777888888888888888754432 2
Q ss_pred Cchhh---HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 482 PASSL---FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 482 ~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
|-... ..-+++.....++...|..+++-|...+...-...-+.+...+.-...-.+|+.
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 32333 335556666778888888888888766544322233444444433333334443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-14 Score=130.58 Aligned_cols=460 Identities=10% Similarity=0.052 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCccCHh----hHHH
Q 005856 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFE-VLIESYGKKGIVQESVKIFDIMKQLGVERSVK----SYDA 131 (673)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ 131 (673)
.++..+.+.|..+..+.+|+..++-+++...-|+..... .+...|.+...+.+|++.|.-....-...+.. ..+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 345556677777777888888888888777666655432 34456778888888888887776542122222 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH------------HHH
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV------------VTY 199 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~ 199 (673)
+...+.+.|.++.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|..|......||. ...
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 444566788888888888887764 566665555566666778888888888888764333322 222
Q ss_pred HHHHH-----HHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 200 NTMIN-----GYNRFK--KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272 (673)
Q Consensus 200 ~~ll~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (673)
+..+. -+-+.+ +.++++-.-..+..--+.|+... | .+-+++.++.-.-..+..+ .-. .-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la~d-lei-~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELAID-LEI-NK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhhhh-hhh-hH
Confidence 22111 111111 11111111111111111122110 0 0111111111110000000 001 11
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHH-Hhc-cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 005856 273 LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV-QCK-SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (673)
Q Consensus 273 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (673)
..-+.+.|+++.|+++++-+....... ...+-+.+... |.+ ..++..|..+-+..+..+ .-+......-...-...
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~-~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKT-ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchh-hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 224567788888888877765543222 11122222222 222 335666666666555432 12222222222223446
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (673)
|++++|.+.|++++..+. .-...+-.+.-.+-..|+.++|+..|-++...-..+..+...+...|....+.
T Consensus 504 gd~dka~~~ykeal~nda---------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDA---------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CcHHHHHHHHHHHHcCch---------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 788888888888754321 01111222233455678888888888776655556777778888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
..|++++-+.... ++.|+.....|...|-+.|+-..|.+.+-+-.. -++.+..+...+..-|....-++.++.+|++.
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888776654 566778888888888888888888777665544 35667777777777788888888888888876
Q ss_pred HHcCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHh
Q 005856 511 VEKGVKENLDLVAKIL-EALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 511 ~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.- +.|+..-|..++ .++.+.|++.+|+++|+.+..
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 43 467777776554 444567888888888887765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=130.54 Aligned_cols=482 Identities=14% Similarity=0.099 Sum_probs=307.0
Q ss_pred CCChHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC----HH
Q 005856 20 QFDHNLVYNVLHG---AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD----ED 92 (673)
Q Consensus 20 ~~~~~~~~~~l~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 92 (673)
.++..++++...+ .....+|+..|+-+.+..-+|.....-..+..++.+.+++.+|+.+++..+++-+..+ ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 3444555554333 2356788888888877664444444445577888999999999999998777643333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--------
Q 005856 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTY-------- 164 (673)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------- 164 (673)
+.+.+...+.+.|++++|..-|+...+. .|+..+-..|+-.+.-.|+-++..+.|.+|+.....||..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4555666788999999999999998875 477665555555556679999999999999865323322211
Q ss_pred HHHHHHHHhcCC--------HHHHHHHHHH---HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 005856 165 NVMLWGFFLSLK--------LETAIRFFED---MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS 233 (673)
Q Consensus 165 ~~l~~~~~~~~~--------~~~a~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (673)
..|+.-..+... -..|.+..-. +..--+.|+... | .+-+.+.+..-... +.-...
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~--~la~dl 421 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHA--ELAIDL 421 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhh--hhhhhh
Confidence 112221111111 1111111111 111111111110 0 11112222111110 000001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHH
Q 005856 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT--ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV 311 (673)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (673)
--.-..-+.+.|+++.|+++++-+....-+.-...-+ +.+..+.--.++..|.++-+..+.. ..-++.+...-...
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNI 499 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCce
Confidence 1112344678888888888888776543222222222 2222222344677777777766553 22244555555555
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHH
Q 005856 312 QCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC 391 (673)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (673)
....|++++|.+.+++.+..+..-....|+. .-.+-..|+.++|++.|-++...- ..+...+..+...|-
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il---------~nn~evl~qianiye 569 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL---------LNNAEVLVQIANIYE 569 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHH
Confidence 6678899999999998886543222233332 234567789999999887763321 235566777888888
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTA 471 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 471 (673)
...+...|++++.+....-|.+|.+...|...|-+.|+-..|.+.+-.--+. ++-+..+...|...|....-+++++.+
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 8899999999998888777889999999999999999999888876554443 556788888888889988889999999
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 005856 472 LDSMIEDGHSPASSLFRSVMESLF-EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (673)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (673)
|++..- +.|+..-|..++..|. +.|+++.|..+++..... ++.+..++.-+++.+...|
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 998753 6799999988887665 689999999999998776 4458888888888777766
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-11 Score=112.95 Aligned_cols=322 Identities=12% Similarity=0.119 Sum_probs=204.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-----CcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh
Q 005856 278 DAGKMVEVQKVLREMVERYIPP-----KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE---AGHYGILIENFCK 349 (673)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 349 (673)
..|+..+....+.+++.. +.| .-...|..+...|-..|+++.|..+|++..+...+.- ..+|-.....=.+
T Consensus 359 ~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 456777777888887765 222 1345788888999999999999999999887543222 2334444445556
Q ss_pred cCCHHHHHHHHHHHHHchhccC---CCCCCCC------chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHH
Q 005856 350 AEMYDRAIKLLDKLVEKEIILR---PQSTLDM------EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (673)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (673)
..+++.|+++++++........ -+.+.++ +...|+..++.--..|-++....+++++.+....+|......
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6778888888887754321100 0001111 233456666666677888888999999998887777776666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhhHHHHHH--HH
Q 005856 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLR---KGEPADAKTALDSMIEDGHSPASSLFRSVME--SL 494 (673)
Q Consensus 421 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~ 494 (673)
...+-...-++++.+++++-...-..|+. ..|+..+.-+.+ ....+.|..+|++.++ |-+|...-...++- .-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 66666677788888888877664334444 567777666553 2457889999999998 65554332222221 22
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHccCC
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD------SLLSVLSEKGK 566 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~~~~~~g~ 566 (673)
.+.|....|+.+++++... +++. ...|+..+.--...=-+.....+|++.++ .-|+.. .+.+.-.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhh
Confidence 3468888899999997664 3322 34455554433222233445667777777 345522 23444457899
Q ss_pred hHHHHHHHHHHhcC-CCCCChHhHHHHHHHHHhcCChHH
Q 005856 567 TIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 567 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
++.|..++..+.+. +|..+...|++.-.-=.+.|+-+-
T Consensus 674 idRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 674 IDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 99999999888775 455566667655555567888433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-10 Score=107.37 Aligned_cols=598 Identities=9% Similarity=0.055 Sum_probs=366.7
Q ss_pred HHhcCCC-hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---h-----cCChHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 005856 29 VLHGAKN-SEHALQFFRWVERAGLFNHDRETHLKMIEILG---R-----VGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (673)
Q Consensus 29 ~l~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 99 (673)
+-...|. ..+-.-+|+++.+.- |.+...|...++.-. + ...+......|+.....- ..=+.+|...+.
T Consensus 34 Ie~k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-HkmpRIwl~Ylq 110 (835)
T KOG2047|consen 34 IEHKAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKMPRIWLDYLQ 110 (835)
T ss_pred HHHHccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcCCHHHHHHHH
Confidence 3334443 445667788887763 777777777663221 1 111223333333221100 012346777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 100 SYGKKGIVQESVKIFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLE 178 (673)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 178 (673)
...++|+.-.....|++.+.. .+......|...+......|-++-+..+|++.++. .| ..-.-.+..++..++++
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccchH
Confidence 888999999999999987653 34445567888888888889999999999999764 33 33566788888999999
Q ss_pred HHHHHHHHHHhCC------CCcCHHHHHHHHHHHHcCCChH---HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 005856 179 TAIRFFEDMKSRG------ISLDVVTYNTMINGYNRFKKMD---EAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERA 247 (673)
Q Consensus 179 ~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~ 247 (673)
+|.+.+...+... .+.+...|..+.+..++.-+.- ....+++.+... -+| ...|.+|...|++.|.+
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 9999998876431 2335556777766666554332 233444444432 233 35689999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------C------CHHHHHHHHHHHHHCC---------
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDA----------------G------KMVEVQKVLREMVERY--------- 296 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~--------- 296 (673)
++|..+|++.... ..+..-|..+.++|+.- + +++-...-|+.+...+
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999887764 23344444444444321 1 1223334444443321
Q ss_pred -CCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhc
Q 005856 297 -IPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE------AGHYGILIENFCKAEMYDRAIKLLDKLVEKEII 369 (673)
Q Consensus 297 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (673)
-.|.+...|..-+.. ..|+..+-...+.++.+. +.|. ...|..+...|-..|+.+.|..+|++..+...
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y- 418 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY- 418 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-
Confidence 122233344333332 356677777778777664 2221 23466778888899999999999999854321
Q ss_pred cCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-C-----------------CCHHhHHHHHHHHHhcCChh
Q 005856 370 LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-V-----------------LDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-----------------~~~~~~~~l~~~~~~~~~~~ 431 (673)
..+.--..+|..-...-.+..+++.|..+.+...... + .+...|...++.--..|-++
T Consensus 419 ----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 419 ----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred ----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 1111113345555555567788889988888775443 1 13345566666667778899
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-hhHHHHHHHHhc---cCCHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFE---DGRVQTASRVM 507 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~ 507 (673)
....+++.+.+..+. ++..-......+-.+.-++++.+++++-+..-..|+. ..|+..+.-+.+ .-..+.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999886554 4444444445556667788899998887765444543 356666655543 34689999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHc----cCChHHHHHHHHHHhcC
Q 005856 508 KSMVEKGVKENLDLVAKILEA--LLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSE----KGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~----~g~~~~A~~~~~~~~~~ 580 (673)
++.++ +.+|...-+..|+.+ --+.|-...|+.++++.... .++. ...+...|.+ .=-......+++++++.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99999 455543322223222 23568889999999987653 3333 2334444432 11223445677777776
Q ss_pred CCCCCh-HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 581 DCIIDL-ASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD----WKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 581 ~~~~~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
-+.... ......++.=.+.|..+.|..++....+-.++.. |.+|... -.++|+.+--..+.++=++++
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F---EvrHGnedT~keMLRikRsvq 724 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF---EVRHGNEDTYKEMLRIKRSVQ 724 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHH
Confidence 433332 2234566777789999999999999888665432 3333322 367888444444544444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-12 Score=120.66 Aligned_cols=495 Identities=11% Similarity=0.018 Sum_probs=301.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+..-+..+++-+..+.++..|.-+-++....+ .++..---+++++.-.|++..|..+...-.- ...|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHH
Confidence 45556666666666677777777777776654 4444444566667777777777666654422 1345666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 249 (673)
++.+..+++.|..++...... -+...+-.-- + ...-..+.+. ++.. .......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~---~~~f~yy~~~-~-~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVE---TNPFSYYEKD-A-ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccchh---hcchhhcchh-h-hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 777777777777777633100 0111000000 0 0000000000 0000 00000111111123334445555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHH
Q 005856 250 ALRIFDEMKSFDVKPNAVTYTALLPGLCDA-GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
|...|.+.... |...|..+....... -...+...++..+--......+......+.........-+.....-.+.
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 65555555432 333332222111100 0001111111110000000001122222221110000000000000001
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 005856 329 IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK 408 (673)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (673)
.-.+...+........+-+...+++.+..++++..++.. ++....+..-|.++...|+..+-..+-.++.+
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD---------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---------CCCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111223455556666777888899999999999987654 23444555566788889999998888899999
Q ss_pred cCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH
Q 005856 409 KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR 488 (673)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 488 (673)
..|..+.+|-+++..|...|+..+|++.|.+....+.. =...|..+.+.|.-.|..++|...+...-+.- +-....+.
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~L 384 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSL 384 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHH
Confidence 98999999999999999999999999999988764311 23579999999999999999999998877642 22222333
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh---------CCCCCCHHHHHH
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ---------SGSVPNFDSLLS 559 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~ 559 (673)
.+.--|.+.++...|.++|.++....+. |+..++.+.-.....+.+.+|..+|+..+. ....|.+..++.
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 4455688899999999999999887544 677777787777888999999999987763 124555778999
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++.+.+++++|+..+++++...+. +..+|..++-+|...|+.+.|++.|.+.+-..
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999998755 67788899999999999999999999999764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.4e-16 Score=145.36 Aligned_cols=225 Identities=18% Similarity=0.237 Sum_probs=59.8
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
..+...+...++.+.|...++++...++.++..+..++.. ...+++++|..++....+.. +++..+..++..+.+.+
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHh
Confidence 3333344444555555555555554444444444444444 34455555555544443321 23344444444455555
Q ss_pred ChHHHHHHHHHHHHcC-CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDG-HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
+++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++++++..+. +......++..+...|+.+++.+++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 5555555555544221 1233344444444445555555555555555554333 3444444555555555555544444
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 543 DLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 543 ~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
+..... +..|. +..++.++...|++++|+.+++++++.++. ++.....++++|...|+.++|.++.+++.
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred HHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 444432 22233 233444444445555555555544443322 33334444555555555555555444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-13 Score=133.90 Aligned_cols=287 Identities=13% Similarity=0.053 Sum_probs=150.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchh--hHHHHHHHH
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEA-GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS--SYNPMIQHL 390 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 390 (673)
..|+++.|.+.+....+.. |++ ..+-....+..+.|+++.|.+.+.++.+.. |+.. ........+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----------p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----------GNDNILVEIARTRIL 163 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------CcCchHHHHHHHHHH
Confidence 4567777777776665542 332 223334456666677777777777764321 2221 222235566
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHH---HHHhcCChH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYI-CLIE---SYLRKGEPA 466 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~ 466 (673)
...|+++.|...++.+.+..|.++.+...+...+...|++++|.+.+..+.+.++. +...+. .-.. .....+..+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777777777777777777777788888887777777776543 222221 1111 112222222
Q ss_pred HHHHHHHHHHHcCC---CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHH
Q 005856 467 DAKTALDSMIEDGH---SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI-LEALLMRGHVEEALGRI 542 (673)
Q Consensus 467 ~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 542 (673)
++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+..++.....+..+ .......++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 22333333333211 124555556666666666666666666666665443221111111 11112234555555555
Q ss_pred HHHHh-CCCCC--C-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 543 DLMMQ-SGSVP--N-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 543 ~~~~~-~~~~p--~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
++..+ .+..| . ..+++..+.+.|++++|.++|+++......|++..+.+++..+.+.|+.++|.+++++.+
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55444 22223 1 123455555566666666666632222223344445556666666666666666665544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-12 Score=119.17 Aligned_cols=406 Identities=14% Similarity=0.056 Sum_probs=252.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHcC
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRF 209 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 209 (673)
...-|.++|.+++|++.|.+.++. .|+ +..|.....+|...|+++++.+--...++. .|+ +..+..-..++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 445677888999999999988875 566 777888888888889999988888887776 333 45555666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcC--------
Q 005856 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF--DVKPNAVTYTALLPGLCDA-------- 279 (673)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~-------- 279 (673)
|++++|+.=..-..-.+.--|..+--.+=+.+-+.+ ...+.+- +.+. -+.|+.....+.+..+...
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~---~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEK---LKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHh---hcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 887776543222211110001111111111111111 1111111 1111 1345555545444433211
Q ss_pred CC-----HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCC---CCCC---------hhhHHH
Q 005856 280 GK-----MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS---IPTE---------AGHYGI 342 (673)
Q Consensus 280 ~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~---------~~~~~~ 342 (673)
++ ..++.+.+..... ..+..|.+.+.+-.... ...+ ..+...
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~---------------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLE---------------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred CccchhhHHHHHHHHHhhCc---------------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 00 1111111111100 01222222222111100 0000 111222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHH
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (673)
-...+.-.|+.-.|..-|+..+... + .+...|-.+...|....+.++....|....+.++.++.+|..-.+
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~----~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLD----P-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcC----c-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 2234455788888888888886543 1 122237777788899999999999999999999889999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (673)
++.-.+++++|..-|++...... -+...|..+..+..+.+.++++...|++..+ .++..+..|+.....+...++++.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHH
Confidence 99989999999999999988642 2566777777777788899999999999887 356667788888899999999999
Q ss_pred HHHHHHHHHHcCCC-----CCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHH
Q 005856 503 ASRVMKSMVEKGVK-----ENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAV 571 (673)
Q Consensus 503 a~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~ 571 (673)
|.+.|+..++..+. .+...+ ..++..-. .+++..|+.++++..+ +.|. +.+++....+.|+.++|+
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999998887333 222222 22222222 3788999999999988 6665 456777777899999999
Q ss_pred HHHHHHhcC
Q 005856 572 KLLDFCLGR 580 (673)
Q Consensus 572 ~~~~~~~~~ 580 (673)
++|+++...
T Consensus 558 elFEksa~l 566 (606)
T KOG0547|consen 558 ELFEKSAQL 566 (606)
T ss_pred HHHHHHHHH
Confidence 999988765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-11 Score=108.95 Aligned_cols=329 Identities=12% Similarity=0.065 Sum_probs=220.3
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HH
Q 005856 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY--TA 271 (673)
Q Consensus 194 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 271 (673)
.|...+-.....+.+.|....|+..|...... -+..|.+.+....-..+.+.+. .... |...|..-+ -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHH
Confidence 35444444444566778888888888887754 2344444444433333333222 2221 222222222 22
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHh
Q 005856 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--PTEAGHYGILIENFCK 349 (673)
Q Consensus 272 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 349 (673)
+..++-...+.+++.+-.......|.+. +...-+....+.....|+++|+.+|+++.+.+. -.|..+|+.++ |.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~-~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPN-SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 3345555667778887777777777654 777777777777888899999999999888742 12445555554 233
Q ss_pred cCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC
Q 005856 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (673)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (673)
..+.. +.++..-+- .-. +--+.|...+.+.|+-.++.++|...|++..+.+|....+|+.++.-|....+
T Consensus 310 ~~~sk--Ls~LA~~v~------~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVS------NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred hhhHH--HHHHHHHHH------Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc
Confidence 22211 111111111 011 12334677777888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
...|.+-++.+.+-+ +.|-..|..|.++|.-.+.+.-|+-.|++..+. .+.|...|.++...|.+.++.++|++.|+.
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888888864 347788888888888888888888888888764 245677888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 510 MVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+...|-. +...+..++..|-+.++..+|...+++.++
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8877543 556777788888888888888888776665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-12 Score=119.53 Aligned_cols=413 Identities=15% Similarity=0.119 Sum_probs=268.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 005856 165 NVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISYTTMIKGYV 242 (673)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 242 (673)
....+-|.+.|.+++|++++...... .|+ ...|.....+|...|+|+++.+--...++. .|+ +..+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34456677899999999999999987 566 778888999999999999999888887775 344 345666667778
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCC--CcHHhHHHHHHHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMV--------EVQKVLREMVERYIPP--KDNSVFMKLLGVQ 312 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 312 (673)
..|++++|+.=.. ..+++..+....-.. .++.-.++-...+.+| ++..........+
T Consensus 195 ~lg~~~eal~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 8888887754222 122222222111111 1222222222211122 1333333322222
Q ss_pred hccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--c---CCHHHHHHHHHHHHHchhccCCCCCCCCch------h
Q 005856 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK--A---EMYDRAIKLLDKLVEKEIILRPQSTLDMEA------S 381 (673)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~ 381 (673)
... .......+.......+..++.. . ..+..|...+.+-........... ..|. .
T Consensus 262 ~~~------------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--~~d~~le~~A~ 327 (606)
T KOG0547|consen 262 HAD------------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--EIDAELEYMAE 327 (606)
T ss_pred ccc------------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--ccchhHHHHHH
Confidence 110 0000000111111122211111 1 124444444433322111000000 0111 1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
+.......+.-.|+.-.|..-|+..+...+.+...|..+..+|....+.++....|..+.+.+.. ++.+|..-...+.-
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 12222223344689999999999999988666666888899999999999999999999987543 77788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 462 KGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
.+++++|..-|++.+.. .|+ ...+..+..+..+.+.+++++..|++..++ ++..++.|+.....+...++++.|++
T Consensus 407 L~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 89999999999999874 343 455666666677899999999999999987 44467889999999999999999999
Q ss_pred HHHHHHhCCCCCC-------HHH----HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHH
Q 005856 541 RIDLMMQSGSVPN-------FDS----LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (673)
Q Consensus 541 ~~~~~~~~~~~p~-------~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 609 (673)
.|+...+ +.|. ... .+-.+.=.+++..|..++.++++.+|+.+ ..|..|+....+.|+.++|+++|
T Consensus 484 ~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 484 QYDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHH
Confidence 9998887 4444 111 11112235899999999999999987744 46789999999999999999999
Q ss_pred HHHHHc
Q 005856 610 FKIMEK 615 (673)
Q Consensus 610 ~~~~~~ 615 (673)
++...-
T Consensus 561 Eksa~l 566 (606)
T KOG0547|consen 561 EKSAQL 566 (606)
T ss_pred HHHHHH
Confidence 997754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-11 Score=109.11 Aligned_cols=384 Identities=14% Similarity=0.076 Sum_probs=269.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HH-HH
Q 005856 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VI-SY 234 (673)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~ 234 (673)
...|...+-.....+-..|....|.+.|...... .+-....|..|.... .+.+.+..+ .. |.+.| .. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----Hh-cCcccchHHHH
Confidence 3445544444444556778899999999888765 233444554444332 333333222 21 11212 11 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCcHHhHHHHHHHHh
Q 005856 235 TTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERY-IPPKDNSVFMKLLGVQC 313 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 313 (673)
-.+..++-...+.++++.-.+.....|++.+...-+....+.....++++|+.+|+++.+.. ...+|..+|..++-+-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 23445666667888888888888888876666666666666778899999999999998862 11235566666554432
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHcc
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (673)
..... ..+-+-...--+--+.|.-.+...|.-.++.++|...|+++++-+ + .....|+.+.+-|...
T Consensus 311 ~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN----p-----~~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 311 DKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN----P-----KYLSAWTLMGHEYVEM 377 (559)
T ss_pred hhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC----c-----chhHHHHHhhHHHHHh
Confidence 22111 111111111013344566677888888999999999999997654 2 2455788899999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
.+...|.+.++.+.+..|.|...|-.|+++|.-.+.+.=|+-.|+++.... +.|+..|.+|..+|.+.++.++|.+.|.
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999863 4589999999999999999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.....| ..+...+..+...+.+.++..+|...|++-++. |...+ ....--|..-+.+.+++++|..+......
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999865 446688999999999999999999999987763 33322 22223355666788899988877665544
Q ss_pred CCCCCCHHHHHHHHHccCChHHHHHHHHHHhc
Q 005856 548 SGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 548 ~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
. .-..++|..+++....
T Consensus 536 ~---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 536 G---------------ETECEEAKALLREIRK 552 (559)
T ss_pred C---------------CchHHHHHHHHHHHHH
Confidence 1 2234666666665544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-12 Score=129.59 Aligned_cols=281 Identities=16% Similarity=0.120 Sum_probs=176.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHH--HHHHHHH
Q 005856 315 SGHLNAAADVLKAMIRLSIPTEAGHYGIL-IENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN--PMIQHLC 391 (673)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 391 (673)
.|+++.|.+.+....+.. +.+..+..+ ..+..+.|+++.|...+.++.+.. |+..... .....+.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----------~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----------DNDQLPVEITRVRIQL 164 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------CcchHHHHHHHHHHHH
Confidence 466666666665544431 122222222 334467777777777777774422 2322222 2245667
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------hHHHHHHHHHhcCC
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD-------AYICLIESYLRKGE 464 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~ 464 (673)
..|+++.|...++.+.+..|.++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77888888888888888878888888888888888888888888888888765442221 22233333333444
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005856 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDL 544 (673)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (673)
.+...++|+...+. .+.+......+...+...|+.++|.+++++..+.. ++.... ++.+....++++++++.+++
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHH
Confidence 45555555554331 23456666777777888888888888887777743 233322 23333455778888888877
Q ss_pred HHhC-CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 545 MMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 545 ~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
..+. +..|. ...++..+...+++++|.+.|+++++.. |+...+..++.++.+.|+.++|.+.+++.+.
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7762 22222 2345666667888888888888877764 4556666778888888888888888887765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-12 Score=127.24 Aligned_cols=285 Identities=11% Similarity=0.104 Sum_probs=213.3
Q ss_pred hcCChHHHHHHHhhcccCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHH--HHHHHHHHcCCHHH
Q 005856 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVL-IESYGKKGIVQESVKIFDIMKQLGVERSVKSYD--ALFKLILRRGRYMM 144 (673)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~ 144 (673)
..|+++.|.+.+....+.+ +++..+..+ ..+..+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 4689999998888766542 123333333 33447889999999999998874 35543332 33567888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHcCCChHHHHH
Q 005856 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 217 (673)
|...++++.+.. +-++..+..+...|...|++++|..++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999988764 336677788888888999999999999999887654222 233444555555566677777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005856 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (673)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 297 (673)
+++.+... .+.+......+...+...|+.++|..++++..+. .|+.... ++.+....++.+.+.+..+...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--
Confidence 77776543 3447778888899999999999999999888874 5555322 233344568899999999988876
Q ss_pred CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
.|+|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778888999999999999999999999999885 688888888999999999999999999887653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=133.39 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=222.2
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC---CCCHHhHHHHHHHHHhc
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG---VLDPVAFNNLIRGHSKE 427 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 427 (673)
-+..+|+..|... +.... -+......+..+|...+++++|..+|+.+.+.. ..+..+|.+.+..+-+
T Consensus 333 y~~~~A~~~~~kl--------p~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~- 402 (638)
T KOG1126|consen 333 YNCREALNLFEKL--------PSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD- 402 (638)
T ss_pred HHHHHHHHHHHhh--------HHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-
Confidence 3567888888885 32222 223566778899999999999999999999887 4577788887765533
Q ss_pred CChhHHHHHH-HHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-chhhHHHHHHHHhccCCHHHHHH
Q 005856 428 GNPDSAFEIV-KIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSVMESLFEDGRVQTASR 505 (673)
Q Consensus 428 ~~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 505 (673)
+-++..+ +.+.+. -+..+.+|.++..+|.-+++++.|++.|++.+.. .| ...+|+.+..-+.....+|.|..
T Consensus 403 ---~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 403 ---EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred ---hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHH
Confidence 1222222 334443 2447899999999999999999999999999873 45 45677777777888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.|+.++..++. +-..|..+...|.+.++++.|.-.|+++.+ +.|... .++..+.+.|+.++|+.++++|...+
T Consensus 477 ~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 477 SFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 99999887555 566778889999999999999999999998 888844 35556668999999999999999998
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhcccc
Q 005856 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGS 655 (673)
Q Consensus 582 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 655 (673)
+......| ..+..|...|++++|+..++++.+.- +.+...+..++..|...|+.+.|..=.-.+...+++.+
T Consensus 554 ~kn~l~~~-~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 554 PKNPLCKY-HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred CCCchhHH-HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 87655555 78999999999999999999987653 44677777899999999999999654444444554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=141.57 Aligned_cols=259 Identities=14% Similarity=0.129 Sum_probs=61.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
..++...|+++.|+++++........+.+...|..+...+...++++.|...++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 33444555555555555332221101233344444444444455555555555555443322 33334444433 34455
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG-IEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (673)
+++|..++....+.. +++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555554443321 333444444445555555555555555543321 12334444444444555555555555555
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005856 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (673)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (673)
+..+..+. |....+.++..+...|+.+++.++++...... +.|...+..+..++...|+.++|+.+|++..... +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 55544221 34444445555555555555444444444331 2233344444555555555555555555544421 224
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 266 AVTYTALLPGLCDAGKMVEVQKVLREM 292 (673)
Q Consensus 266 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 292 (673)
+.....+..++...|+.++|.++.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444444555555555555444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-12 Score=128.09 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=198.0
Q ss_pred HhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCH--hhHHHHHHHHHHcCCHHH
Q 005856 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSV--KSYDALFKLILRRGRYMM 144 (673)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~ 144 (673)
...|+++.|.+.+....+.... +...+-....++...|+++.|...+.+..+.. |+. ...-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4678888888888877765432 22333344566777788888888888876643 333 233334677778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH-HHHHHH---HcCCChHHHHHHHH
Q 005856 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYN-TMINGY---NRFKKMDEAEKLFA 220 (673)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~ 220 (673)
|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887764 335667777888888888888888888888877644 322221 111111 22222222333444
Q ss_pred HHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 221 EMKEKN---IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT---YTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 221 ~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 443321 1136777888888888899999999988888875 344432 11122222445777888888888877
Q ss_pred CCCCCCcH--HhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 295 RYIPPKDN--SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 295 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
. .|+++ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..-
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5 56677 77888899999999999999999954443346888888899999999999999999998876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-11 Score=106.79 Aligned_cols=250 Identities=10% Similarity=0.035 Sum_probs=142.2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc-------CChhHHHHHHHHHHhCCCCCC-HHhHHHHHH
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE-------GNPDSAFEIVKIMGRRGVPRD-ADAYICLIE 457 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 457 (673)
++-.|.+.+++.+|..+.+++. |.+|.-|..-...+... ....-|.+.|+..-..+..-| ..--.++..
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 4444566677776666554432 33333333222223332 234455566655544333222 223445566
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
++.-..++++.+..+..+...-...|... ..+..+.+..|++.+|.++|-.+....++........++++|.+.|+++-
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 66667778888888888776433333333 35677888999999999999888776666344444677889999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 538 ALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
|++++-++...+-.-. ...+...|.+.+.+--|-+.|+..-..+| +++.| .|+-....-++..+....
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP--~pEnW---------eGKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP--TPENW---------EGKRGACAGLFRQLANHK 515 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC--Ccccc---------CCccchHHHHHHHHHcCC
Confidence 9887644322111101 12345556678888777777775555544 45555 455555556666655443
Q ss_pred CCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 617 GVTD-WKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 617 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
..|- .......+..++..++ -.++.+.+.++++.
T Consensus 516 ~~~~p~~~~rEVvhllr~~~n-sq~E~mikvvrkwa 550 (557)
T KOG3785|consen 516 TDPIPISQMREVVHLLRMKPN-SQCEFMIKVVRKWA 550 (557)
T ss_pred CCCCchhHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 3222 2233334444444444 34555555555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-11 Score=112.28 Aligned_cols=267 Identities=12% Similarity=0.036 Sum_probs=121.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 272 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
-..-+...+++.+..++.+.+.+. .|.....+..-+..+...|+...-..+-.++.+. .|..+.+|-.+.-.|...|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 333344444444444444444442 2223333333333444444444444433344333 1333334444444444444
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (673)
+..+|.+.|.+....+ . .=...|-....+|+-.|..+.|...+..+.+.-+.....+.-+..-|.+.++++
T Consensus 327 k~seARry~SKat~lD------~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLD------P---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred CcHHHHHHHHHHhhcC------c---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 4444444444442211 0 011134444444444444444444444444433222222233333444444555
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CchhhHHHHHHHHhccCCHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED--GHS----PASSLFRSVMESLFEDGRVQTASR 505 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~ 505 (673)
-|.++|.++... .+.|+...+-+.-.....+.+.+|...|+..... ... --..+++.+..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 555555444433 1223444444444444444445555444444311 000 012345556666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 005856 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
.+++.+...++ +..++..++..|...|+++.|++.|.+.+. +.|+.
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 66666666444 566666666666666666666666666555 55554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-13 Score=130.87 Aligned_cols=281 Identities=14% Similarity=0.065 Sum_probs=179.1
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCH
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (673)
+..+|+..|..+... +.....+...+..+|...+++++|.++|+.+.+.. .-..-+..+|++.+..+- +.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~------p~rv~~meiyST~LWHLq---~~ 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE------PYRVKGMEIYSTTLWHLQ---DE 403 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhHHHHHHHHHH---hh
Confidence 345666667664443 33344556666777777777777777777765432 111234556666554332 22
Q ss_pred hHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-DADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
-+--.+-+.+.+..+..|.+|.++..+|.-+++.+.|++.|+++.+.+ | ...+|+.+.+-+.....++.|...|+..
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 222233344555556777777777777777777777777777777642 3 5567777777777777777777777776
Q ss_pred HHcCCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-
Q 005856 476 IEDGHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN- 553 (673)
Q Consensus 476 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 553 (673)
+.. .| +...|..+...|.+.++++.|.-.|+++.+.++. +......+...+.+.|+.|+|+++++++.. ..|.
T Consensus 482 l~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn 556 (638)
T KOG1126|consen 482 LGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKN 556 (638)
T ss_pred hcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCC
Confidence 641 12 2334555566677777777777777777776655 555566677777777777777777777776 3332
Q ss_pred ---HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 554 ---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 554 ---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
-..-+..+...+++++|+..+++..+.-|+ +...+..++..|-+.|+.+.|+.-+.=+.+-
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 233555666777777777777776665443 3444556777777778877777777766654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-11 Score=107.11 Aligned_cols=454 Identities=11% Similarity=0.084 Sum_probs=285.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
+.-+...+++..|+.+++.....+. .-...+-.-+..++.+.|++++|...+..+...+ .++...+..+..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 4456677899999999988875541 1222233335567889999999999999877643 4577788888888888899
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+.+|..+-.... .++-.-..+...--+.++-++-..+.+.+... ..--.++.......-.+.+|++++..
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988876653 23333334445555677777777766666432 12223445545555678999999999
Q ss_pred HHhCCCCcCHHHHHHHH-HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005856 187 MKSRGISLDVVTYNTMI-NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (673)
.... .|+-...|..+ -+|.+..-++-+.+++.-..+. ++.++...|..+....+.=+-..|..-.+++.+.+-..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 8876 34544445443 4567778788888888887764 34455566666555555434344444455554443111
Q ss_pred HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhH
Q 005856 266 AVTYTALLPGLCD-----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (673)
Q Consensus 266 ~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (673)
|. .+.-+++ -.+-+.|.+++-.+.+. -+.+...++-.|.+.++..+|..+.+++. |.++.-|
T Consensus 253 ---~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~-----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 253 ---YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH-----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred ---ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh-----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 11 1111222 23456777777766653 23455667778899999999999888764 2233222
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHchhccCCCCCCCCchh-hHHHHHHHHHccCCHhHHHHHHHHHHHcCCC
Q 005856 341 GILIENFCKAEM-------YDRAIKLLDKLVEKEIILRPQSTLDMEAS-SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL 412 (673)
Q Consensus 341 ~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (673)
-.-.-.+...|+ ..-|.+.|.-. ..++...|.. .-.++..++.-..++++.+..+..+..-...
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlV--------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N 391 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLV--------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN 391 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHh--------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222333332 34455555544 3333333322 2345555666667888888888887776654
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH-HHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY-ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF-RSV 490 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l 490 (673)
|...-..+.++++..|++.+|.++|-.+....++ |..+| ..|.++|.+++.++-|..++-++ .-+.+..++ ..+
T Consensus 392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLI 467 (557)
T ss_pred cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHH
Confidence 5555556889999999999999999887765444 44555 55677899999999887665544 333333333 334
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
..-|.+++.+--|.+.|+.+...++ +++.|.
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP--~pEnWe 498 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDP--TPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCC--CccccC
Confidence 4568888998888889988877654 455553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-11 Score=108.94 Aligned_cols=221 Identities=13% Similarity=0.118 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW---DEDMFEVLIESYGKKGIVQESV 111 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 111 (673)
+++.|.++|-.+.+.+ +-+..+...+.+.|.+.|..++|+++.+.+.++.--+ .......+..-|...|-+|.|.
T Consensus 50 Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 50 QPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred CcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4445555555554433 3344444445555555555555555555544431000 0112223334444445555555
Q ss_pred HHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH----TYNVMLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (673)
.+|..+.+.| .--....-.|+..|-...+|++|+++-+++.+.+.++... .|.-+...+....+++.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555544322 1222333444444545555555555555444433222211 2222333333334444444444444
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
.+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 443221 22222333344444444444444444444433222222334444444444444444444444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-12 Score=109.59 Aligned_cols=293 Identities=16% Similarity=0.165 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--cHHhHHHHHHHHhccCChHHHH
Q 005856 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHLNAAA 322 (673)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 322 (673)
++.++|.+.|-+|.+.. +.+..+-.++.+.|.+.|..+.|+++.+.+.++.--+. ...+...|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 55566666666666532 22333444555666666666666666666665421110 1123445556677777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHH
Q 005856 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIF 402 (673)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 402 (673)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++...+ +......-...|.-+...+....+.+.|...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~----~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG----GQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC----CccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7777776643 2334456677777777888888888777775543 1111111122455566666667888999999
Q ss_pred HHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005856 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (673)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 482 (673)
+++..+.++....+-..+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+.+.. +
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 99999888888888888899999999999999999999988666566788889999999999999999999988754 3
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 005856 483 ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQ 547 (673)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 547 (673)
.......+........-.+.|...+.+-+.. +|+...+..++..-.. .|.+.+.+.+++.|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3344444444444445556676666665555 5678888888776553 3456667777777765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-09 Score=103.30 Aligned_cols=526 Identities=14% Similarity=0.096 Sum_probs=306.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 111 (673)
..+++...+++.+.+++.. |-...+....+-.+...|+-++|.......++.++. +..+|..+.-.+....++++|.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 4679999999999999854 666677777776777889999999999888876654 7788888888888889999999
Q ss_pred HHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (673)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 191 (673)
+.|......+ +.|...|.-+.-.-++.|+++.......++.+.. +.....|..+..++.-.|+...|..+++...+..
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999876 4566777777766778889998888888887752 3355678888888889999999999999988764
Q ss_pred -CCcCHHHHHHHH------HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005856 192 -ISLDVVTYNTMI------NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (673)
Q Consensus 192 -~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (673)
..|+...+.... ....+.|.++.|.+.+...... +......-..-...+.+.+++++|..++..+... .|
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 245655554332 3345678888888877665432 1112222344567788899999999999999886 46
Q ss_pred CHHHHHHHHH-HHHcCCCHHHHH-HHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHH
Q 005856 265 NAVTYTALLP-GLCDAGKMVEVQ-KVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (673)
Q Consensus 265 ~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (673)
|..-|...+. ++.+..+.-++. .+|....+. .|........=+.......-.+....++....+.|+++- +..
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~d 325 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKD 325 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhh
Confidence 6666555544 443333333343 666665443 221111111112222222233445566677777776553 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCC----------CCCCchhhH--HHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQS----------TLDMEASSY--NPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
+...|-.-...+ ++++.+..-....... .-+|....| ..++..+-+.|+++.|...++....+.
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 443332222111 2222211100000000 012333222 234445555666666666666666555
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
|.-+..|..-.+.+...|++++|..++++..+.+ .+|...-.-.+....+.++.++|.++...+.+.|. +....
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~--- 475 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNN--- 475 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhh---
Confidence 5445555555566666666666666666665542 23443333444555555666666665555544432 11100
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHccCC
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVA--KILEALLMRGHVEEALGRIDLMMQS--GSVPNFDSLLSVLSEKGK 566 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~~~~~~g~ 566 (673)
+..| .-.|. .-+.+|.+.|++-.|++-+..+-.. .+.-+...+..-|.+.|-
T Consensus 476 ----------------L~~m--------qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~t 531 (700)
T KOG1156|consen 476 ----------------LAEM--------QCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGT 531 (700)
T ss_pred ----------------HHHh--------hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCc
Confidence 0000 00111 1234555666666666555444431 123333445556667777
Q ss_pred hHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 567 TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+..=+++++-.-..- +...|.. -...|+++|-++.+.+
T Consensus 532 lrsYv~ll~~~d~L~---~~p~y~~---------Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 532 LRSYVELLEWEDNLR---SSPYYLR---------AAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHHHHHHHHHhhc---cChHHHH---------HHHHHHHHHHHHhcCc
Confidence 666666665332221 1112211 1345778888877765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-11 Score=118.53 Aligned_cols=539 Identities=15% Similarity=0.094 Sum_probs=290.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHH
Q 005856 52 FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDA 131 (673)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 131 (673)
..|+..+|..++.-|+..|+.+.|- +|.-|.-.+.+.+...|+.++.++...++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 6777778888888888888877777 7777776666677777788877777777776665 477777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCcCHHHHHHHHHHHHcCC
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK-SRGISLDVVTYNTMINGYNRFK 210 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ 210 (673)
|..+|...||... |+...+ -...+...+...|.-.....++..+. ..+.-||... .+......|
T Consensus 89 Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eg 153 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEG 153 (1088)
T ss_pred HHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHH
Confidence 8888888877655 222211 11222333334444333333333321 1122334332 222333445
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 211 KMDEAEKLFAEMKEKN-IEPTVISYTTMIKGYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 211 ~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
-++.+.+++..+.... ..|.. .+++-+.... .+++-..+.+...+ .|++.+|..++.+-...|+.+.|..+
T Consensus 154 lwaqllkll~~~Pvsa~~~p~~----vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNAPFQ----VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHhhCCcccccchHH----HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 6666666665544221 11111 1233333322 23333333333333 58888999999988889999999999
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
+.+|.+.|++. +...|-.++.+ .++...+..++.-|...|+.|+..|+...+..+..+|....+
T Consensus 227 l~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~------------ 290 (1088)
T KOG4318|consen 227 LYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG------------ 290 (1088)
T ss_pred HHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc------------
Confidence 99999998877 55545454444 778888888888899999999999988877777665542111
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHH------------HHHHcC-CCCHHhHHHHHHHHHhcCChhHHHH
Q 005856 369 ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFR------------QLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFE 435 (673)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 435 (673)
+.+ .+....+++-+.+-+-.| ..|.+.++ +..-.+ .....+|.. ..-...+|.-++..+
T Consensus 291 ----~e~-sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veq 362 (1088)
T KOG4318|consen 291 ----EEG-SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQ 362 (1088)
T ss_pred ----ccc-cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHH
Confidence 111 122223333333222233 12221111 111112 111122222 222233677777777
Q ss_pred HHHHHHhC--CCCC-CHHhHHHHHHHHHhcCChHHHHHHHH--HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 436 IVKIMGRR--GVPR-DADAYICLIESYLRKGEPADAKTALD--SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 436 ~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
+-..+... ...+ ++..|..++.-|.+.-+..-...++. +.+... .+....-.+....... +...+.+-+...
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~L 439 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGL 439 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhh
Confidence 76666531 1111 33445444444443222111111111 111110 0000000111111100 111111111111
Q ss_pred HH----cCCCC-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhc
Q 005856 511 VE----KGVKE-------NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 511 ~~----~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
.. +...| -...-+.++..+++.-+..+++..-+.....-+.--+..++..+....+.+.|....++...
T Consensus 440 ss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 440 SSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred hHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 10 01111 11222344555555555566665544333322222356778888888888888888887665
Q ss_pred CC--CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 580 RD--CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 580 ~~--~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
.. ...+...+..+.+.+.+.+...++.++++++.+.-.. ....+..+++.+....|+.+.-.++.+.+-+.+
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslg 595 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLG 595 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 43 2234566778889999999999999999988874322 235666678888888888887777777776655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-11 Score=110.06 Aligned_cols=284 Identities=16% Similarity=0.118 Sum_probs=201.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC
Q 005856 315 SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG 394 (673)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (673)
.|++..|++...+..+.+-. ....|..-+.+-.+.|+.+.+-.++.++.+. ...++....-+........|
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--------~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--------AGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--------CCCchHHHHHHHHHHHHhCC
Confidence 57777777777776665422 2334445556667778888888887777332 22344445556666777888
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhcCChHH
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-------DAYICLIESYLRKGEPAD 467 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 467 (673)
+++.|..-..++.+..+.++.+.....++|.+.|++.+...++..+.+.+.-.+. .+|+.+++-....+..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 8888888888888888888888999999999999999999999998887765554 356666665555555555
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
-...|+..-. ..+.++....+++.-+.++|+.++|.++..+..+.+.+|+. ..+ ....+-+++..=++..+.-.+
T Consensus 248 L~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHH
Confidence 5556665543 23445566667777888889999999998888888776652 212 233456666666666664443
Q ss_pred -CCCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 548 -SGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 548 -~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+..|. +.+++..|.+.+.+.+|...|+.+++. .|+...|..+++++.+.|+..+|.+..++.+.
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 566676 456777888888899999998888776 45677788888889999999998888888764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-09 Score=105.75 Aligned_cols=444 Identities=13% Similarity=0.087 Sum_probs=276.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252 (673)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 252 (673)
..+++...++..+.+.+. .+-...+.....-.+...|+.++|......-....+ .+.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 556666777777666663 222444544444445566777777777766655433 256777777777777777888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 005856 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332 (673)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 332 (673)
.|......+ +-|...+.-+.-.-.+.++++........+.+. .|.....|..++.++.-.|+...|..++++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887777654 445555555554445667777766666666653 44466677777777777888888888887776654
Q ss_pred -CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhh-HHHHHHHHHccCCHhHHHHHHH
Q 005856 333 -IPTEAGHYGILI------ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS-YNPMIQHLCHNGQTGKAEIFFR 404 (673)
Q Consensus 333 -~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 404 (673)
-.|+...+.... ....+.|.+++|.+.+....... .|... -..-...+.+.+++++|..++.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI----------VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH----------HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 245555444332 23456688888887776652211 12222 2344566788999999999999
Q ss_pred HHHHcCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 405 QLMKKGVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGRR---GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480 (673)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 480 (673)
.+....|.+...|..+..++.+- +..+....+|....+. .-.|.....+. .....-.+..-.++..+.+.|+
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCC
Confidence 99999888888888888888633 3333333667666553 11121111111 1112222344566667777787
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc--C------------CCCCHHHHH--HHHHHHHcCCCHHHHHHHHHH
Q 005856 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--G------------VKENLDLVA--KILEALLMRGHVEEALGRIDL 544 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~------------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 544 (673)
++-...+ ...|-.....+-..++...+... | -+|....|. .++..+-..|+++.|..+++.
T Consensus 320 p~vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cchhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6543333 33333222222111221121111 1 134544443 566777899999999999999
Q ss_pred HHhCCCCCCHHHHH----HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--
Q 005856 545 MMQSGSVPNFDSLL----SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-- 618 (673)
Q Consensus 545 ~~~~~~~p~~~~~~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-- 618 (673)
... ..|+...+. .++.++|++++|..+++.+.+.+ .+|...-..-+.-..++.+.++|.+++.+....+..
T Consensus 397 AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~ 473 (700)
T KOG1156|consen 397 AID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV 473 (700)
T ss_pred Hhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence 887 778855444 77889999999999999888875 234433347788888999999999999998876631
Q ss_pred CCHH----HHH--HHHHHHHhcCCcchHH
Q 005856 619 TDWK----SSD--KLIAGLNQEGNTKQAD 641 (673)
Q Consensus 619 ~~~~----~~~--~l~~~~~~~g~~~~a~ 641 (673)
.+.. .|- .-+.+|...|++-+|.
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 1111 111 1455677777777773
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=106.07 Aligned_cols=288 Identities=13% Similarity=0.155 Sum_probs=229.0
Q ss_pred hcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHH
Q 005856 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147 (673)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (673)
..|+|.+|++.+.+-.+.+.. ....|..-..+-...|+.+.+-.++.++.+..-.++....-.........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 568999999999987776544 3445555566777889999999999999886334666677777788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHcCCChHHHHHHHH
Q 005856 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEKLFA 220 (673)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 220 (673)
-.+++.+.+. .++.......++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9998888753 35677788889999999999999999999998865443 467788887777777777666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 005856 221 EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (673)
Q Consensus 221 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 300 (673)
..... .+.++..-.+++.-+.+.|+.++|.++..+..+.+-.|+ ...+-.+.+.++...-++..+.-.+. .|+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~ 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPE 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh--CCC
Confidence 76543 344566677888889999999999999999888765555 22223456778888888888887775 455
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
++..+..+...|.+.+.+.+|...|+...+. .|+..+|..+..+|.+.|+...|.+++++.+..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8899999999999999999999999988775 789999999999999999999999999887743
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-10 Score=113.30 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=162.9
Q ss_pred CCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHH
Q 005856 18 VPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL 97 (673)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 97 (673)
|..+++..++..+...|+.+.|- +|..|.-.+ .|.....++.++......++.+.+. .|.+.+|..+
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 33456777788888899999998 999887766 6788888999988888888876655 4788999999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHH----HcCCccCHhh--------------HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005856 98 IESYGKKGIVQE---SVKIFDIMK----QLGVERSVKS--------------YDALFKLILRRGRYMMAKRYFNKMLSEG 156 (673)
Q Consensus 98 i~~~~~~~~~~~---a~~~~~~~~----~~g~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (673)
..+|...||... +.+.+..+. ..|+.....- -...+....-.|-++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998754 333222221 1222111111 1112222333455555555554442211
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005856 157 IEPTRHTYNVMLWGFFLS-LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235 (673)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (673)
.. .+ +..+++-+... ..+++-..+.....+ .|+..+|..++++....|+.+.|..++.+|.+.|++.+..-|-
T Consensus 170 ~~-~p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WN-AP--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cc-ch--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 00 11 11124433322 233443333333333 5799999999999999999999999999999999887776666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 236 TMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66655 78888888999999999999999999988877777555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-09 Score=107.22 Aligned_cols=434 Identities=13% Similarity=0.074 Sum_probs=264.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHH
Q 005856 156 GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISY 234 (673)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 234 (673)
.+.-+...|..+.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..+++........|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567788888888889999999999999998876443 678899999999999999999999988766533343 3333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHh--CCC--CCCHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHCCCC
Q 005856 235 TTMIKGYV-AVERADDALRIFDEMKS--FDV--KPNAVTYTALLPGLCDA-----------GKMVEVQKVLREMVERYIP 298 (673)
Q Consensus 235 ~~ll~~~~-~~~~~~~a~~~~~~~~~--~~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 298 (673)
-..-..|. +.+..++++++-.+... .+. ......|..+.-+|... ....++.+.+++.++. .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--D 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--C
Confidence 33334444 44677777777766654 111 12233444444444321 2245677888888775 5
Q ss_pred CCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCC
Q 005856 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (673)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (673)
|.|+.+...+.--|...++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..++... .
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~----~----- 545 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG----D----- 545 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh----h-----
Confidence 6688888888888999999999999999999987678889999999999999999999999999876542 1
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHhHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLI 456 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~ 456 (673)
|-.....-+..-...++.+++......+...-..-+.+ ...++-....+....+.-. ...-...++..+.
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 00011111112223456666655544443321000000 0011111122222221110 1111122222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC--c------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGHSP--A------SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...... ...+..-.. +......| + ...|......+.+.++.++|...+.++....+. ....|......
T Consensus 618 ~l~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLL 693 (799)
T ss_pred HHHHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHH
Confidence 211111 111100000 11111111 1 224445556667777777777777777665332 45556666677
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHH--HHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK--LLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 602 (673)
+...|...+|.+.|..... +.|+ ...++..+.+.|+..-|.. ++..+++.++. .+..|..++.++-+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccch
Confidence 7778888888887777666 5555 3456666667776666665 77778887654 456677788888888888
Q ss_pred HHHHHHHHHHHHcC
Q 005856 603 LNAYSILFKIMEKG 616 (673)
Q Consensus 603 ~~A~~~~~~~~~~~ 616 (673)
++|.+.|.-+.+-.
T Consensus 771 ~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 771 KQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888877643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-09 Score=97.51 Aligned_cols=307 Identities=14% Similarity=0.088 Sum_probs=212.1
Q ss_pred CCCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhh
Q 005856 262 VKPNAVTYTALLPGL--CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH 339 (673)
Q Consensus 262 ~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (673)
+.|+..+....+.++ +..++...+...+-.+......|+|......+...+...|+.++|...|++....+ +.+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhh
Confidence 344444444444433 44566666666665555555677789999999999999999999999999887653 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNN 419 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (673)
.....-.+.+.|+++....+...++.... .....|-.-.......+++..|+.+-++.++..+.+...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alil 339 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK---------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALIL 339 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh---------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHh
Confidence 33344456778888888888888765421 122233333344456788999999999999888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH-HHHh-cc
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM-ESLF-ED 497 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~ 497 (673)
-...+...+++++|.-.|+.++... +-+...|..|+++|...|.+.+|.-+-+...+. ++.+..++..+. ..|. ..
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCc
Confidence 8888899999999999999988752 347789999999999999999988877776652 334555554442 2222 22
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~ 574 (673)
.--++|.+++++.+...+. -......++..+...|..++++.++++.+. ..|| ...+++.+...+.+.+|.+.|
T Consensus 418 ~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred hhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3346777777777665433 234456677777777888888888877776 5555 345777777778888888888
Q ss_pred HHHhcCCCC
Q 005856 575 DFCLGRDCI 583 (673)
Q Consensus 575 ~~~~~~~~~ 583 (673)
..++..+|+
T Consensus 495 ~~ALr~dP~ 503 (564)
T KOG1174|consen 495 YKALRQDPK 503 (564)
T ss_pred HHHHhcCcc
Confidence 877777654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-09 Score=110.40 Aligned_cols=579 Identities=12% Similarity=-0.011 Sum_probs=306.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (673)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 113 (673)
++...|+..|-+..+.+ +.-..+|..+...|...-+..+|...|+..-+.+.. +...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 35677777777777765 556677888888888777888888888887665443 566777788888888888888887
Q ss_pred HHHHHHcC-CccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005856 114 FDIMKQLG-VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI 192 (673)
Q Consensus 114 ~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 192 (673)
.-...+.. ...-...|....-.|.+.++...|+.-|+...... +.|...|..+..+|..+|++..|.++|.++....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 44333311 00112234444455667778888888888777653 33677788888888888888888888877776522
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHh
Q 005856 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN------IEPTVISYTTMIKGYVAVERADDALRIFDE-------MKS 259 (673)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~ 259 (673)
. +...---....-+..|.+.+|...+..+...- ..--..++-.+...+...|-..++..+++. ...
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2 22221222233455677777777777665320 000112222222222222322223222222 211
Q ss_pred CCCCCCHHHHHHHHHHH-----------------------HcCCCH---H---HHHHHHHHHHHCCCCCCcHHhHHHHHH
Q 005856 260 FDVKPNAVTYTALLPGL-----------------------CDAGKM---V---EVQKVLREMVERYIPPKDNSVFMKLLG 310 (673)
Q Consensus 260 ~~~~~~~~~~~~ll~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (673)
+....+...|..+-.+| -..+.. + -+.+.+-.-+.. .. ++..|..++.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~-~~~~WyNLGi 783 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AI-HMYPWYNLGI 783 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hh-ccchHHHHhH
Confidence 11111222222221111 111111 1 011111111110 00 2223333333
Q ss_pred HHhc----c----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhh
Q 005856 311 VQCK----S----GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382 (673)
Q Consensus 311 ~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (673)
.|.+ . .+...|+..+...++.. ..+..+|+.|.-. ...|.+.-+...|-+.... .+....+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s---------ep~~~~~ 852 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS---------EPTCHCQ 852 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc---------cccchhh
Confidence 3322 1 12234555555555432 2334444444333 4445555555555443221 1224445
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHhHHHHHHH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG----RRGVPRDADAYICLIES 458 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~ 458 (673)
|..+.-.+.+..+++.|...|.......|.+...|..........|+.-++..+|..-- ..|-.++..-|......
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 66666666777788888888887777777777777666666666677777777776522 12334454455555555
Q ss_pred HHhcCChHHHHHHHHH----------HHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHH----
Q 005856 459 YLRKGEPADAKTALDS----------MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVA---- 523 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~---- 523 (673)
...+|+.++-+...+. ... +.+.+...|........+.+.+..|.....+.+.. ..+.+...|+
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 5566665543332222 222 33344555666666666666777776666665433 1111222232
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhc
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVL--SEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAA 599 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~ 599 (673)
...+.+...|.++.|...+.... ...+.......+ .-.++++++.+.|++++...-+.. ......++......
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~---~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEW---MEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccc---hhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 34455566677765554332111 011111222222 347888999999998887532222 23345667777788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005856 600 GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (673)
|..+.|...+.++..... ++..+...|...+.--.+
T Consensus 1089 ~~k~~A~~lLfe~~~ls~-~~~~sll~L~A~~ild~d 1124 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSLSK-VQASSLLPLPAVYILDAD 1124 (1238)
T ss_pred ccchHHHHHHHHHHHhCc-cchhhHHHHHHHHHHhhh
Confidence 888889888888877643 344444444444443333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-08 Score=101.40 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHh
Q 005856 235 TTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (673)
..+...|...|++++|+.++++..+. .|+ +..|..-.+.+-+.|++.+|.+.++..... ++.|...-+..+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHH
Confidence 44555666667777777777766665 344 445666666666777777777777666553 4446666666666667
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEAGH--------YGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
+.|+.++|..++....+.+..|.... ......+|.+.|++..|++.|..+.+..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77777777777766655543222211 1234567788888888887777765543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-07 Score=94.45 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCcCHHHHHHHHHHHHc
Q 005856 140 GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR-----------GISLDVVTYNTMINGYNR 208 (673)
Q Consensus 140 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~ 208 (673)
-.++.+.+.+..|...++..+..+...+..-|...--.+...++|+..... ++.-|..+.--.+.+.++
T Consensus 657 lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~k 736 (1666)
T KOG0985|consen 657 LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACK 736 (1666)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHh
Confidence 345555555555555555555555545555555444455555666655432 233344445556666667
Q ss_pred CCChHHHHHHHHH
Q 005856 209 FKKMDEAEKLFAE 221 (673)
Q Consensus 209 ~~~~~~a~~~~~~ 221 (673)
.|++.+.+++.++
T Consensus 737 t~QikEvERicre 749 (1666)
T KOG0985|consen 737 TGQIKEVERICRE 749 (1666)
T ss_pred hccHHHHHHHHhc
Confidence 7777776666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-07 Score=93.58 Aligned_cols=355 Identities=15% Similarity=0.154 Sum_probs=222.7
Q ss_pred HHHhccCCCCChHHHHH-------HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q 005856 12 NKIRALVPQFDHNLVYN-------VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK 84 (673)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-------~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 84 (673)
++++.+..+.+....-+ .+...|+.+.|++-.+.+ .+..+|..+.+.|.+.++.+-|.-.+-.|..
T Consensus 713 ~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred hhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 45666655555443322 344678999998777765 3566899999999999888888777776642
Q ss_pred C-C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005856 85 K-G-------VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (673)
Q Consensus 85 ~-~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (673)
. | .+.+...-..+.......|.+++|+.+|.+-.+ |..|=..|-..|.+++|.++-+.--.
T Consensus 786 aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR-- 854 (1416)
T KOG3617|consen 786 ARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR-- 854 (1416)
T ss_pred hhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc--
Confidence 1 1 111112222333344677999999999999886 45555677788999999998765422
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005856 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT 236 (673)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (673)
+.. ..||.....-+-..++.+.|+++|++.... -..++..|. .++...+.+.+.+. |...|.-
T Consensus 855 iHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~W 917 (1416)
T KOG3617|consen 855 IHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSW 917 (1416)
T ss_pred eeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHH
Confidence 232 345666667677788999999998875322 222222221 12333333333332 4455665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC
Q 005856 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (673)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (673)
........|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++- . |..+-..+.+.|...|
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------g-d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------G-DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------c-cHHHHHHHHHHhhhhH
Confidence 66666678888888888887654 455666777788888888776652 2 6677788888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-------------C--CHHHHHHHHHHHHHchhccCCCCCCCCchh
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA-------------E--MYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (673)
++.+|...|.+... +...|+.|-.. | +.-.|-++|++. +.
T Consensus 982 ~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--------g~-------- 1036 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--------GG-------- 1036 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--------ch--------
Confidence 88888888877654 33333322211 1 222333444433 10
Q ss_pred hHHHHHHHHHccCCHhHHHHHH---------HHHHHcC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFF---------RQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
.+...+..|-+.|.+.+|+++- +.+.+.- ..|+...+.....|+...++++|..++-..++
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233444566777777666542 2222211 45778888888888888899998888765543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-07 Score=95.48 Aligned_cols=548 Identities=14% Similarity=0.128 Sum_probs=283.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHH
Q 005856 59 HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL-----IESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (673)
Q Consensus 59 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 133 (673)
+..+.+.|-++|-..+|++-+.++.+-. ...+.+.+ +..|...-.++++.+.+..|...++..+..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455666666666666666655543210 11111111 223334446666777777777666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------C
Q 005856 134 KLILRRGRYMMAKRYFNKMLSE-----------GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS------------R 190 (673)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~ 190 (673)
.-|...=-.+..+++|+..... ++..|+......|.+.++.|++.++.++.++-.- .
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 6666665577778888877542 2455666677789999999999999999876321 1
Q ss_pred ---------------CCCcCHHHH------HHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHH
Q 005856 191 ---------------GISLDVVTY------NTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-----------VISYTTMI 238 (673)
Q Consensus 191 ---------------~~~~~~~~~------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll 238 (673)
++.+|...| ...+..|.+.-+....-.+.-.+.......+ ...-.-|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 111111111 0112222222111111111111111000000 00112223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH----HHHH-----HHH-H-----------CCC
Q 005856 239 KGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQ----KVLR-----EMV-E-----------RYI 297 (673)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~~~-----~~~-~-----------~~~ 297 (673)
.-..+.++..--+.+++.....| .-|..+++.+...|...++-.+.. ..++ +.- + +|.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 33344455555566666666666 356777777776555433211100 0000 000 0 000
Q ss_pred C-------CCcHHhHHHHHHHHhccCC-----------hHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHH
Q 005856 298 P-------PKDNSVFMKLLGVQCKSGH-----------LNAAADVLKAMIRLSI--PTEAGHYGILIENFCKAEMYDRAI 357 (673)
Q Consensus 298 ~-------~~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 357 (673)
. .+..+.|....+...+..| -.--..+.++..+.++ ..|+.-.+.-+.++...+-+.+.+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 0 0011222222222222211 1223345555554433 234555666777888888888888
Q ss_pred HHHHHHHHchhccCCCCCCCCchhhHHHHHHH---------------------------HHccCCHhHHHHHHHHHHHcC
Q 005856 358 KLLDKLVEKEIILRPQSTLDMEASSYNPMIQH---------------------------LCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------------~~~~~~~~~a~~~~~~~~~~~ 410 (673)
+++++++-....+. -+...-+.++-. +...+-+++|..+|++...
T Consensus 1005 ELLEKIvL~~S~Fs------e~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-- 1076 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFS------ENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-- 1076 (1666)
T ss_pred HHHHHHhcCCcccc------cchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc--
Confidence 88888754332211 111112222222 2222333344444433211
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
+..+.+.|+. ..+.+++|.++-++. ..+..|..+..+-.+.|...+|.+-|-+. .|+..|.-+
T Consensus 1077 --n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eV 1139 (1666)
T KOG0985|consen 1077 --NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEV 1139 (1666)
T ss_pred --cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHH
Confidence 1122222221 123344444433332 24567888888888888888877666543 456678888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A 570 (673)
+..+.+.|.|++-.+++..+.+..-.|.+. ..++.+|.+.++..+-.++ +..+...+...+++.|...|.++.|
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f----i~gpN~A~i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF----IAGPNVANIQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH----hcCCCchhHHHHhHHHhhhhhhHHH
Confidence 888888888888888888887776655554 3577788888877665444 3333333455678888888888888
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc----------------------C--CCCCHHHHHH
Q 005856 571 VKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK----------------------G--GVTDWKSSDK 626 (673)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----------------------~--~~~~~~~~~~ 626 (673)
.-++. +...|..|+-.+...|+|..|...-+++-+. | .......+..
T Consensus 1214 kl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLee 1284 (1666)
T KOG0985|consen 1214 KLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEE 1284 (1666)
T ss_pred HHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHH
Confidence 77776 2334556777777777777765443332110 1 0123344455
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhh
Q 005856 627 LIAGLNQEGNTKQADILSRMIRGE 650 (673)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~~~~~ 650 (673)
++.-|...|-+++-..+.+.-...
T Consensus 1285 li~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1285 LIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHhhhch
Confidence 777777888877776555544433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-10 Score=107.42 Aligned_cols=197 Identities=17% Similarity=0.121 Sum_probs=131.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4556666666777777777777777766532 223455566666677777777777777777766443 44556667777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
+...|++++|.+.++++.+....|. +..++..+...|++++|...++++++..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766432222 233556666778888888888887776543 34556678888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 605 AYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 605 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
|.+.+++++.. .+.+...+..+...+...|+.++|....+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888887776 233445555566777788888888776665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-09 Score=102.44 Aligned_cols=435 Identities=13% Similarity=0.058 Sum_probs=232.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 005856 87 VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYN 165 (673)
Q Consensus 87 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 165 (673)
++.++.+|..+.-+...+|+++.+-+.|++....- -.....|..+...|...|.-..|..+++.-......| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34567777777777777777777777777765422 2334567777777777777777777777665443223 233333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CcCHHHHHHHHHHHHcC-----------CChHHHHHHHHHHHHCCCCC
Q 005856 166 VMLWGFF-LSLKLETAIRFFEDMKSR--GI--SLDVVTYNTMINGYNRF-----------KKMDEAEKLFAEMKEKNIEP 229 (673)
Q Consensus 166 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 229 (673)
..-+.|. +.+..++++++-.++... +. ......|-.+.-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3333333 346666666666655541 11 11223333333333221 1134566777777665432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHH
Q 005856 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (673)
Q Consensus 230 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (673)
|......+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... .++|......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 333333344455667777788877777777644566777777777777777788887777776664 222333333333
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhH---HHH
Q 005856 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSY---NPM 386 (673)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 386 (673)
..-...++.+++......+... |...- ...+.++-...++....+.-. .. ...-...++ ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la-----~~-q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLA-----LS-QPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccC-----cc-cccccchhhHHHHHH
Confidence 3334456666666655554331 00000 000000011111111111000 00 000000111 111
Q ss_pred HHHHHccCCHhHHHHHHHHHHHcCCCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 387 IQHLCHNGQTGKAEIFFRQLMKKGVLD------PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
+..-.+.-..+.. +........++ ...|......+.+.+..++|...+.++... .+.....|......+.
T Consensus 620 ~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence 1111111111111 11111111011 234555666677777777777666666654 2335556666666777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 461 RKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASR--VMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
..|+..+|.+.|...... .|+ +....++...+.+.|+..-|.. ++..+.+.++. +...|..+...+...|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHH
Confidence 777888888877777653 344 4456677777777777666666 77777777765 77778788888888888888
Q ss_pred HHHHHHHHHh
Q 005856 538 ALGRIDLMMQ 547 (673)
Q Consensus 538 A~~~~~~~~~ 547 (673)
|.+.|....+
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 8887776665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-08 Score=91.72 Aligned_cols=267 Identities=13% Similarity=0.081 Sum_probs=166.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCch-hhHHHHHHHHHccCCHhHHHHHHHHHHHcCC
Q 005856 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (673)
Q Consensus 333 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (673)
++.+......+...+...|+.++|+..|++.... .|.. .......-.+.+.|+.+....+...+.....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh
Confidence 4666677777777788888888888888776322 1221 1122222334566777777777777666543
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 491 (673)
.....|-.-+......+++..|+.+-++..+.+. .+...+..-...+...|++++|.-.|+..+... +.+...|..++
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~ 375 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLF 375 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 3444444444555556777777777777766432 244455444556677788888877777776531 23456777888
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHc-CCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHccC
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL-EALLM-RGHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEKG 565 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g 565 (673)
.+|...|.+.+|...-+..... +.-+..+...+. ..+.. -.--++|.+++++.+. ..|++. .+...+...|
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhC
Confidence 8888888888877776666554 122444444332 22221 2234677777777666 666643 3455556678
Q ss_pred ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++++++.++++.+.. .+|....+.|++.+...+.+.+|...|..++...
T Consensus 453 ~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 888888888877764 3455666778888888888888888877777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-11 Score=105.20 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=187.3
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
..+..+|.+.|-+.+|+..++...+. .+.+.||..|.++|.+...+..|+.++.+-.+. .+-++.......+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 56788999999999999999987776 467788999999999999999999999988875 3334445556777888889
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
+.++|.++++...+.. +.+......+...|.-.++.+-|+.++.++++.|+. ++..|..+.-+|.-.+++|-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988742 445666666777788899999999999999999988 78889999999999999999999999
Q ss_pred HHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 544 LMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 544 ~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+.+..--.|+ |..+..+....|++.-|.+.|+-++..++. ..+.++.|+-.-.+.|+.++|..++..+.+..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8887555555 334555555789999999999988887644 56778888888889999999999998877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-10 Score=118.06 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=134.7
Q ss_pred ChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC
Q 005856 71 KLNHARCILLDMPKKGVQWDEDMFEVLIESYG---------KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR 141 (673)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 141 (673)
++++|...|++..+.++. +...+..+..+|. ..+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 466666666666665432 3444444444332 1234667777777776654 3455566666666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 005856 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAE 221 (673)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 221 (673)
+++|...|++..+.+ +.+...+..+...+...|++++|...++++.+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777766653 224455666666666777777777777777665332 222222333344556677777777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 005856 222 MKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV-TYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (673)
Q Consensus 222 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 300 (673)
......+-+...+..+..++...|+.++|...+.++... .|+.. ..+.+...|...| +.+...++.+.+..-..+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 654421223344555666666777777777777665443 33322 3333444445555 355555555444211110
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (673)
....+ ....+.-.|+-+.+... +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11111 33334445555555544 555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=102.85 Aligned_cols=237 Identities=10% Similarity=0.096 Sum_probs=157.2
Q ss_pred HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchh
Q 005856 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (673)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (673)
...-..+..+|.+.|....|...|+..++. .|-+.||..|-..|.+..++..|+.++.+-++.. +-++.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---------P~~VT 291 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---------PFDVT 291 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---------Cchhh
Confidence 334455666677777777777777666665 4555566667777777777777777777665432 12333
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
...-+.+.+-..++.++|.++++...+..+.+.....++...|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|.-
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 33445556666677777777777777777777777777777777777777777777777777665 66777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 462 KGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
.++++-++..|++....--.|+ ...|..+.......||+.-|.+.|+-.+..+.. +.+.++.+.-.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHH
Confidence 7777777777777765433343 335666666666777777777777777666544 5566676766666777777777
Q ss_pred HHHHHHHhCCCCCC
Q 005856 540 GRIDLMMQSGSVPN 553 (673)
Q Consensus 540 ~~~~~~~~~~~~p~ 553 (673)
.+++.... ..|+
T Consensus 450 sll~~A~s--~~P~ 461 (478)
T KOG1129|consen 450 SLLNAAKS--VMPD 461 (478)
T ss_pred HHHHHhhh--hCcc
Confidence 77776665 4444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-09 Score=102.56 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=109.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
++..+...|...|++++|+++.+..+++.|..+..|..-.+.+-+.|++.+|.+.++..+..+.. |...-+..+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 44666778889999999999999999999888999999999999999999999999999987544 77888888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchh------hH--HHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 462 KGEPADAKTALDSMIEDGHSPASS------LF--RSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
+|+.++|.+++..+.+.+..|-.. .| .....+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999998766433322 12 33456788999999999888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-08 Score=93.49 Aligned_cols=259 Identities=16% Similarity=0.176 Sum_probs=145.8
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHh----HHHHHHHHHhcCChh-HHHHHHHHHHhCCC----------CCCHH
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA----FNNLIRGHSKEGNPD-SAFEIVKIMGRRGV----------PRDAD 450 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~----------~~~~~ 450 (673)
+.-.+...|+..+|..++..+.+..++|... -|.|+.+-....-++ .++..++....... .....
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445667899999999999999988665533 333333222222122 12222222111000 00111
Q ss_pred hH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHh--ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005856 451 AY-ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF--EDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (673)
Q Consensus 451 ~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (673)
.. +.++..|. +.-+.+.++....- +..|. ..+..++..+. +...+..+.+++....+..+.-.....-..+.
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 11 12222222 33334444333321 12233 33444444332 22357788888888777655434555556677
Q ss_pred HHHcCCCHHHHHHHHH--------HHHhCCCCCCHHH-HHHHHHccCChHHHHHHHHHHhcC--CCCCC----hHhHHHH
Q 005856 528 ALLMRGHVEEALGRID--------LMMQSGSVPNFDS-LLSVLSEKGKTIAAVKLLDFCLGR--DCIID----LASYEKV 592 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~-~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l 592 (673)
.....|+++.|++++. .+.+.+..|.... +...+.+.++.+-|..++..++.. .-.+. ...+..+
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7889999999999999 7777778888654 444555666766677777666642 11111 2223334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 593 LDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+..-.+.|+-++|...++++++.. +++...+..++.+|... +.+.|+.+.+.|....
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK 521 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence 444456799999999999999854 34666666677777654 5667766666655433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-10 Score=92.71 Aligned_cols=200 Identities=18% Similarity=0.129 Sum_probs=159.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (673)
.+...|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|+++++..+. +-.+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 355667778899999999999999988753 234567777888888999999999999999888666 677788888889
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
|..|++++|...|++....+..|. +..++..-.+.|+.+.|..+|+++++.++..+.. ...+++..++.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~-~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA-LLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH-HHHHHHHHHhcccchHH
Confidence 999999999999998888655444 4556666678999999999999999988765444 44789999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 606 YSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
..++++....++ .+..++-..|+.-...|+.+.|......|.+.-+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999888776 67767666777788889988887777777655543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-10 Score=110.55 Aligned_cols=239 Identities=15% Similarity=0.111 Sum_probs=170.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-----G-VPRDAD-AYICLIESYLRKGEPADAKTALDSMIED-----G- 479 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~- 479 (673)
-..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++.+|..+|+++..- |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3346666888899999999999988877653 2 123332 3344777888999999999999988643 2
Q ss_pred CCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHh---C
Q 005856 480 HSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-ENL-DLVAKILEALLMRGHVEEALGRIDLMMQ---S 548 (673)
Q Consensus 480 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 548 (673)
..|. ..+++.|..+|.+.|++++|..+++.+.+. +.. |.+ ..++.++..+...+++++|..+++...+ .
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1122 345677777899999999998888877653 222 222 3356677788889999999999886665 1
Q ss_pred CCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcCC----CCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 549 GSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRD----CII---DLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 549 ~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
-..++ ...++..|...|++++|.+++++++... ... ....++.++..|.+.+++.+|.+.|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 3458888889999999999999988642 111 145668899999999999999988887543
Q ss_pred ------cCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 615 ------KGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 615 ------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
...+....+|..|+..|...|+++.|..+.+.+...-
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 1222346677789999999999999988877766443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-10 Score=114.90 Aligned_cols=216 Identities=15% Similarity=0.040 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (673)
+++++|...++++++.. | -+...+..+...+...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 318 ~~~~~A~~~~~~Al~ld----P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 318 NAMIKAKEHAIKATELD----H-----NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred hHHHHHHHHHHHHHhcC----C-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 34566666666665432 1 13445555555666667777777777777776666677777777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
++|...++.+.+.+.. +...+..++..+...|++++|...+++..+...+-+...+..+...+...|++++|...+.++
T Consensus 389 ~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 389 EEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 7777777777665322 222223333345556777777777777665321112333455556666777777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcC
Q 005856 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (673)
....+. +....+.+...|...| ++|...++.+.+. ...|. .......+.-.|+.+.+..+ +++.+.
T Consensus 468 ~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 468 STQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 544222 3334445555555555 3566655555441 11111 11133334445666666555 555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-07 Score=88.21 Aligned_cols=454 Identities=14% Similarity=0.107 Sum_probs=227.1
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.....+++++|.+....++... |.+..++..-+.++++.+.|++|+.+.+.-..... .+...|.. .-+.-+.+..+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEK-AYc~Yrlnk~D 96 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEK-AYCEYRLNKLD 96 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHH-HHHHHHcccHH
Confidence 3445668888888888888765 67777888888888888888888866554332110 01111111 12334678888
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH--TYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+|+..++-..+ .+..+...-.+.+.+.|++++|+.+|+.+.+.+.+ +.. .-..++.+-. .-.+. +.+.
T Consensus 97 ealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a----~l~~~-~~q~ 166 (652)
T KOG2376|consen 97 EALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAA----ALQVQ-LLQS 166 (652)
T ss_pred HHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----hhhHH-HHHh
Confidence 88888773321 33345566667777888888888888888766432 211 1111111110 01111 1222
Q ss_pred HHhCCCCcCHHHHHH---HHHHHHcCCChHHHHHHHHHHHHCC---C---CCC---H-----HHHHHHHHHHHhcCCHHH
Q 005856 187 MKSRGISLDVVTYNT---MINGYNRFKKMDEAEKLFAEMKEKN---I---EPT---V-----ISYTTMIKGYVAVERADD 249 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~---~---~~~---~-----~~~~~ll~~~~~~~~~~~ 249 (673)
... .| ..+|.. ..-.+...|++.+|+++++.....+ + ..+ . ..-..|..++-..|+.++
T Consensus 167 v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 167 VPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred ccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 211 22 222222 2234556788888888887763211 0 000 0 011223344555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCHHH--HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHH
Q 005856 250 ALRIFDEMKSFDVKPNAVTYTALLPGL---CDAGKMVE--VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV 324 (673)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 324 (673)
|..++....... .+|........+-+ ....++-. +...++..... ..+....-
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~---------------------l~~~~l~~ 300 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK---------------------LAEFLLSK 300 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH---------------------hHHHHHHH
Confidence 666666666553 33432222221111 11111000 01111110000 00001111
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHH--ccCCHhHHHHH
Q 005856 325 LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC--HNGQTGKAEIF 402 (673)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~ 402 (673)
|..-.. .....-+.++..| .+..+.+.++.... + +..|.. .+..++..+. +...+..+.++
T Consensus 301 Ls~~qk----~~i~~N~~lL~l~--tnk~~q~r~~~a~l--------p--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~ 363 (652)
T KOG2376|consen 301 LSKKQK----QAIYRNNALLALF--TNKMDQVRELSASL--------P--GMSPES-LFPILLQEATKVREKKHKKAIEL 363 (652)
T ss_pred HHHHHH----HHHHHHHHHHHHH--hhhHHHHHHHHHhC--------C--ccCchH-HHHHHHHHHHHHHHHHHhhhHHH
Confidence 110000 0001111222222 23333444433333 1 112222 2333333322 22246677777
Q ss_pred HHHHHHcCCCC-HHhHHHHHHHHHhcCChhHHHHHHH--------HHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 403 FRQLMKKGVLD-PVAFNNLIRGHSKEGNPDSAFEIVK--------IMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 403 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
+....+..+.. ..+...++......|+++.|.+++. .+.+.+..| .+-..+...+.+.++.+.|..++.
T Consensus 364 L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 364 LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHH
Confidence 77766665433 5566677777888888888888888 444444333 344556666677777666666666
Q ss_pred HHHHc--CCCCchhhHHHHH----HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 474 SMIED--GHSPASSLFRSVM----ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 474 ~~~~~--~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
..+.. .-.+.......++ ..-.+.|+.++|..+++++.+.++. +..+...++.+|++. +++.|..+-+
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 65532 1112222222222 2334568889999999998887544 677777777777665 4666766544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=101.14 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 267 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
..+..+...+...|++++|...++++++. .|.+...+..+...+...|+++.|...+++..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34444455555555555555555555543 23345555555555555666666666665555543 2333445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
+...|++++|...++++++.. ........+..+..++...|+++.|...+.+.....+.++..+..+...+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 666666666666666654321 0011222344455555566666666666666665555555556666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 476 (673)
.|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665554 23344455555555556666666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-07 Score=94.61 Aligned_cols=598 Identities=13% Similarity=0.015 Sum_probs=323.9
Q ss_pred HHHHHHhccCCCCChHHH----HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q 005856 9 RLQNKIRALVPQFDHNLV----YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK 84 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 84 (673)
.++..|+.+.-.++.-.. ..+++..-+...|.+-|+.+-+.+ +.+..++......|++..+++.|..+.-...+
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 344455555444443333 335555567889999999998877 78888999999999999999999998544333
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005856 85 KGVQ-WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHT 163 (673)
Q Consensus 85 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 163 (673)
.... .-..-|..+.-.|...++...|...|+...+.. |.|...|..++.+|.+.|++..|.++|.+.... .|+. +
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~ 630 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-K 630 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-H
Confidence 2110 011223334556788899999999999998866 567889999999999999999999999888664 3432 2
Q ss_pred HHHHH--HHHHhcCCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHCC--
Q 005856 164 YNVML--WGFFLSLKLETAIRFFEDMKSRG------ISLDVVTYNTMINGYNRFKKM-------DEAEKLFAEMKEKN-- 226 (673)
Q Consensus 164 ~~~l~--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~-- 226 (673)
|...- -..+..|.+.++...+......- ..--..++..+...+.-.|-. +++.+.|.-.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 32222 23456788888888777665320 000111221111111111211 12222221111111
Q ss_pred ------------------CCCC------------------------------------------HHHHHHHHHHHHh---
Q 005856 227 ------------------IEPT------------------------------------------VISYTTMIKGYVA--- 243 (673)
Q Consensus 227 ------------------~~~~------------------------------------------~~~~~~ll~~~~~--- 243 (673)
+.|+ ..+|..+...|.+
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 0111 1111111111111
Q ss_pred -c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCCh
Q 005856 244 -V----ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (673)
Q Consensus 244 -~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (673)
. .+...|+..+....+.. ..+..+|+.+.- ....|++.-+...|-+-.. ..|.+..+|..+...+.+..++
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccH
Confidence 0 11123344443333221 122333333322 2333444444444433332 3455666677777777778888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhH
Q 005856 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (673)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (673)
+.|...|...+... |.+...|-.........|+.-++..+|..-.+-. ...+-.++...|.........+|+.+.
T Consensus 867 E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~----~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELC----SKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred HHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh----ccccccchhhHHHHHHHHHHhccchHH
Confidence 99999988887764 4455555544444556677777777776632222 333444555555554444555655544
Q ss_pred HH----------HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHH----HHHHHHhcC
Q 005856 399 AE----------IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYIC----LIESYLRKG 463 (673)
Q Consensus 399 a~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~~~~~~ 463 (673)
-+ -.+++.....+.+...|...+...-+.+.+..|.+...+.... ....+...|+. +.+.++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 33 3344444455677778888888888888888887777665321 11234445553 334455667
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHcCCCHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-LDLVAKILEALLMRGHVEEALGR 541 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 541 (673)
+++.|...+..... ..+......-+. ..-.|+++++.+.|+++... +-..+ +.....++.+....+.-+.|...
T Consensus 1022 efe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~l 1097 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFL 1097 (1238)
T ss_pred chhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHH
Confidence 77765544332211 112112111122 24468999999999999876 22222 34556677777788888888876
Q ss_pred HHHHHhCCCCCCHHHHH-----HHHH-ccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 542 IDLMMQSGSVPNFDSLL-----SVLS-EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 542 ~~~~~~~~~~p~~~~~~-----~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+-+.... -.|+..++. ..+. +.-....+++-+++......-.-+..+ ..-..|.+.|+-....+++++.+-.
T Consensus 1098 Lfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~l-l~e~i~~~~~r~~~vk~~~qr~~h~ 1175 (1238)
T KOG1127|consen 1098 LFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGL-LKELIYALQGRSVAVKKQIQRAVHS 1175 (1238)
T ss_pred HHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhH-HHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 6555541 123322211 1111 121222222222222222111111122 2334456788888888889988865
Q ss_pred CCCCCHHHHHHHH
Q 005856 616 GGVTDWKSSDKLI 628 (673)
Q Consensus 616 ~~~~~~~~~~~l~ 628 (673)
. +.++..|..|-
T Consensus 1176 ~-P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1176 N-PGDPALWSLLS 1187 (1238)
T ss_pred C-CCChHHHHHHH
Confidence 3 23444444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-08 Score=87.83 Aligned_cols=310 Identities=13% Similarity=0.109 Sum_probs=179.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC
Q 005856 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (673)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (673)
+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+..+++. .|+-..+...-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444555566666666666655431 111122222334556666666666666666653 4433333444455566667
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCH
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (673)
.++.|..-|+.+++.. |+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~------------------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW------------------------VLVQQLKSASGSGDC 171 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH------------------------HHHHHHHHHhcCCch
Confidence 7777776666666653 21111 011111110001100 112233344556777
Q ss_pred hHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (673)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 476 (673)
..|+.....+++..+.+...+..-..+|...|++..|+.-++...+..- .+..++..+-..+...|+.+.++...++.+
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777776666655432 244555556666667777777777777766
Q ss_pred HcCCCCchhh----HHH---H------HHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHH
Q 005856 477 EDGHSPASSL----FRS---V------MESLFEDGRVQTASRVMKSMVEKGVKEN---LDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 477 ~~~~~~~~~~----~~~---l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
+. .||... |.. + +......++|.++.+-.+..++..+... ...+..+-.++...|++-+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 53 354321 111 1 1223456778888888888877655422 2334456667778888999999
Q ss_pred HHHHHHhCCCCCCH-HH---HHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 541 RIDLMMQSGSVPNF-DS---LLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 541 ~~~~~~~~~~~p~~-~~---~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
...++++ +.|+. .. -..+|.-...+++|+.-|+++.+.+.+
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 8888888 77773 33 344555677888999988888887644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-07 Score=92.22 Aligned_cols=217 Identities=15% Similarity=0.129 Sum_probs=118.1
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.|...|+++.|...|-.+. .....+.+......|.+|+.+++.+.++.. -..-|..+...|+..|+++
T Consensus 715 hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 4445556666655554331 222344555566677777777776665432 2334556666777777777
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
.|.++|.+.-. ++..|..|.+.|+|..|.++-.+.. |.......|..-..-+-..|++.+|.+++-.+.
T Consensus 783 ~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 783 IAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 77777765432 4556677777777777777766652 233334444444444556666666666653332
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005856 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT 268 (673)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (673)
. |+ ..+.+|-+.|..+..+++.++-... .-..|...+..-+...|+...|..-|-+..+
T Consensus 852 ~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------- 910 (1636)
T KOG3616|consen 852 E----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------- 910 (1636)
T ss_pred C----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------
Confidence 1 22 2345666666666666665543321 1123344455555666666666655543322
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 005856 269 YTALLPGLCDAGKMVEVQKVL 289 (673)
Q Consensus 269 ~~~ll~~~~~~~~~~~a~~~~ 289 (673)
|...+..|-..+.++.|.++-
T Consensus 911 ~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHH
Confidence 333344444455555554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-09 Score=87.49 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=158.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (673)
+...+.-.|...|+...|..-+++.++. +|++..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455666788888888888888888885 67788888888888888888888888888888764 55667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (673)
|..|++++|...|++++.. |. ......+|..+.-+..+.|+.+.|...|++..+..+..+.+...+.......
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----P~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----PA--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----CC--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 8889999999999888754 22 2223447788888888889999999999999888888888888888888899
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 428 GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 428 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
|++-.|..+++.....+. ++.......|..-...|+.+.+.+.=..+..
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999988888877654 7888887888888888888877776666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-09 Score=97.56 Aligned_cols=204 Identities=15% Similarity=0.018 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHH
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESL 494 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 494 (673)
.|..+...|...|++++|...|+...+.. +.+...|+.+...+...|++++|...+++.++.. |+ ...+..+...+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34444455555555555555555555432 1234555555555555555555555555555421 22 33444444445
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH--HH
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA--VK 572 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A--~~ 572 (673)
...|++++|.+.|++..+.++.. .. .......+...+++++|++.+++.......+.+. ........|+..++ .+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~-~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~~~~ 219 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPND-PY-RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEETLME 219 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHHHHHH
Confidence 55555555555555555543321 10 1111111223445555555554433211111121 12222223333222 11
Q ss_pred HHHHHhcCCCC---CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005856 573 LLDFCLGRDCI---IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDK 626 (673)
Q Consensus 573 ~~~~~~~~~~~---~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 626 (673)
.+.+.++..+. .....|..++..+.+.|++++|+..|++++..+ +++.+.+..
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 11111111111 123456667777777777777777777777654 334444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-08 Score=96.01 Aligned_cols=126 Identities=17% Similarity=-0.018 Sum_probs=66.4
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
|......+...|+.+.|...|++..+..|.++..|+.+...+...|++++|...|+...+... -+..+|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 444444555556666666666666665555566666666666666666666666666655321 1344555555555566
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (673)
|++++|.+.++...+.. |+..........+...++.++|...|.+..
T Consensus 146 g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 146 GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66666666666655432 332211111112233455666666665443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-08 Score=85.56 Aligned_cols=355 Identities=12% Similarity=0.108 Sum_probs=216.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV-ML 168 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~ 168 (673)
...-+.+++..+.+..++.+|.+++..-.++. +.+....+.|...|....++..|-+.|+++-.. .|...-|.. -.
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 33446666777778888888888888877754 336667777778888888888888888888664 344444432 24
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005856 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMING--YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (673)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 246 (673)
..+.+.+.+..|+.+...|... |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 5566778888888888877653 232222222222 234678888888888776433 44455555555668888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhH----HHHHHHHhccCC-hHHH
Q 005856 247 ADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF----MKLLGVQCKSGH-LNAA 321 (673)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~-~~~a 321 (673)
++.|.+-|+...+.+---....|+..+. ..+.|+++.|.+...+++++|+.. .+..- ...+.+- ..|+ ...+
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~-HPElgIGm~tegiDvr-svgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ-HPELGIGMTTEGIDVR-SVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc-CCccCccceeccCchh-cccchHHHH
Confidence 9999888888876543334456666554 456688888888888888877643 11110 0000000 0000 0000
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHH
Q 005856 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (673)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (673)
..- -...++.-...+.+.++++.|.+.+-+|- |......|+.|...+.-.- ..+++....+
T Consensus 237 ~Sa-----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmP-------PRaE~elDPvTLHN~Al~n-~~~~p~~g~~ 297 (459)
T KOG4340|consen 237 QSA-----------LVEAFNLKAAIEYQLRNYEAAQEALTDMP-------PRAEEELDPVTLHNQALMN-MDARPTEGFE 297 (459)
T ss_pred HHH-----------HHHHhhhhhhhhhhcccHHHHHHHhhcCC-------CcccccCCchhhhHHHHhc-ccCCccccHH
Confidence 000 01123444445678899999998888872 4445566777776554332 2455666666
Q ss_pred HHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
-+.-+....|..+.||..++-.||+..-++.|-.++.+-..... -.+...|+.+=....-.-.+++|.+-++.+
T Consensus 298 KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 298 KLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66667777788889999999999999988888888755433211 123333433222222334455555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-09 Score=101.98 Aligned_cols=245 Identities=14% Similarity=0.126 Sum_probs=149.6
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-----S-IPTEAG-HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
-..+...+...|...|+++.|..+++..++. | ..|... ....+...|...+++.+|..+|++++...... ..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-FG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-cC
Confidence 3445555666666677777776666665543 1 122222 23346778888999999999999987754321 11
Q ss_pred CCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-----CCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 005856 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-----VLD---PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-- 443 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 443 (673)
...+.-..+++.|..+|.+.|++++|...++...+.. ... ...++.+...++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1122233467777788888999888888877765532 111 224566677777788888888877765431
Q ss_pred -CCCC----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----C--CC-chhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005856 444 -GVPR----DADAYICLIESYLRKGEPADAKTALDSMIEDG----H--SP-ASSLFRSVMESLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 444 -~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (673)
-+.+ -..+++.|...|...|++.+|.++++..+... . .+ ....++.+...|.+.+.+.+|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 13467777777777777777777777765321 1 11 13345566666777777777766666543
Q ss_pred Hc----CCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 512 EK----GVK--ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 512 ~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
.- |+. ....+|..|+..|.+.|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 221 123456667777777777777777766555
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-07 Score=90.16 Aligned_cols=397 Identities=14% Similarity=0.101 Sum_probs=232.5
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCH
Q 005856 204 NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA-VTYTALLPGLCDAGKM 282 (673)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~ 282 (673)
.+.+..|+++.|...|-+..... ++|.+.|..-..+|...|++++|++=-.+-.+. .|+. ..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999988875 448899999999999999999998866666654 5664 4799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHH---HHHHHHHhC---CCCCChhhHHHHHHHHHhc------
Q 005856 283 VEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA---DVLKAMIRL---SIPTEAGHYGILIENFCKA------ 350 (673)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 350 (673)
++|+..|.+-++. .|++......+..++.......... .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999885 7778999999988872210000000 011111000 0000111222222222111
Q ss_pred -CCHHHHHHHHHHHHHch--------hccC-----C---CCCCCCc-------------hhhHHHHHHHHHccCCHhHHH
Q 005856 351 -EMYDRAIKLLDKLVEKE--------IILR-----P---QSTLDME-------------ASSYNPMIQHLCHNGQTGKAE 400 (673)
Q Consensus 351 -~~~~~a~~~~~~~~~~~--------~~~~-----~---~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~ 400 (673)
.+.+......-.+...+ .... | .....|. ..-...+.++..+..++..|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01111111111111100 0000 0 0000010 011344566666777888888
Q ss_pred HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH-------HHHHHHhcCChHHHHHHHH
Q 005856 401 IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC-------LIESYLRKGEPADAKTALD 473 (673)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~ 473 (673)
+.+....... .+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.+...+.
T Consensus 245 q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 8888888877 66666788888888888888877777666655432 2222333 3335556677888888888
Q ss_pred HHHHcCCCCchhhHHHH-------------------------HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 474 SMIEDGHSPASSLFRSV-------------------------MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l-------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
+....-..|+...-... ...+.+.|++..|+..|.+++..++. |...|.....+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 87654444433221110 12245567777777777777776644 66667777777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
|.+.|.+..|+.-.+...+ ..|++.. =+.++....+++.|.+.|+++++.++. +....+.+.+++........
T Consensus 402 ~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~~~~~rc~~a~~~~~~ 478 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAIDGYRRCVEAQRGDET 478 (539)
T ss_pred HHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHhhcCCC
Confidence 7777777777776666666 5566322 233344556777777777777776533 22223334444433233333
Q ss_pred HHHHHHH
Q 005856 605 AYSILFK 611 (673)
Q Consensus 605 A~~~~~~ 611 (673)
..++.++
T Consensus 479 ~ee~~~r 485 (539)
T KOG0548|consen 479 PEETKRR 485 (539)
T ss_pred HHHHHHh
Confidence 3444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-06 Score=84.47 Aligned_cols=456 Identities=15% Similarity=0.131 Sum_probs=213.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHhhccc--------------------CCC
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDR-ETHLKMIEILGRVGKLNHARCILLDMPK--------------------KGV 87 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------~~~ 87 (673)
.....|+++.|..+++.... .|+. ..|..+.......|+.--|.+.|..+-+ .|-
T Consensus 453 aaid~~df~ra~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~gg 528 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGG 528 (1636)
T ss_pred cccccCchHHHHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCC
Confidence 34466899999988887642 3444 4566666666666665555555543211 011
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 88 QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (673)
Q Consensus 88 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (673)
. ....|..-.....-..++.+|..+|-+-- .-...|..|....+|++|+.+-+.. |.+.-...-.+.
T Consensus 529 d-gt~fykvra~lail~kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy 595 (1636)
T KOG3616|consen 529 D-GTDFYKVRAMLAILEKKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSY 595 (1636)
T ss_pred C-CchHHHHHHHHHHHHhhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHH
Confidence 1 11122211111112234444444443211 1122344455555555555543322 211111222334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 247 (673)
++++...|+-++|-++- .. +-.+ -+.++.|.+.|.+..|.+....-.. +..|......+..++.+..-+
T Consensus 596 ~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~ely 664 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELY 664 (1636)
T ss_pred HHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHH
Confidence 44445555555443321 11 1111 2345666777766665544321111 112444555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHH-hHHHHHHHHhccCChHHHHHHHH
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNS-VFMKLLGVQCKSGHLNAAADVLK 326 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 326 (673)
++|-.+|+++.. +...+.+|-+-.-+.+|+++-+-. .|.... .-......+...|+++.|..-|-
T Consensus 665 dkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfi 730 (1636)
T KOG3616|consen 665 DKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFI 730 (1636)
T ss_pred HhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHH
Confidence 666666655542 111222222222234444433322 111111 11222333444555565555554
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHH
Q 005856 327 AMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQL 406 (673)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (673)
+... .-..+.+-.....|.+|+.+++.+.++. .....|-.+.+.|+..|+++.|+++|-+.
T Consensus 731 ea~~---------~~kaieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 731 EANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred Hhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhc
Confidence 3321 2233445555666777777777663322 12224555666677777777777776543
Q ss_pred HHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhh
Q 005856 407 MKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSL 486 (673)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 486 (673)
..++-.+.+|.+.|+|+.|.++-.+... .......|..-..-+-..|++.+|.+++-... .|+
T Consensus 792 --------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~--- 854 (1636)
T KOG3616|consen 792 --------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD--- 854 (1636)
T ss_pred --------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch---
Confidence 2355566777777777777766555432 23344455555555556666666666554431 233
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCC
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGK 566 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~ 566 (673)
..+..|-+.|..+..+++..+-..... ..+-..+..-|-..|+..+|.+.|-+.. ++......|...+-
T Consensus 855 --~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 855 --KAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASEL 923 (1636)
T ss_pred --HHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhh
Confidence 223455666666666655554322211 2233345555555666666655443222 23334444444444
Q ss_pred hHHHHHH
Q 005856 567 TIAAVKL 573 (673)
Q Consensus 567 ~~~A~~~ 573 (673)
+++|..+
T Consensus 924 w~dayri 930 (1636)
T KOG3616|consen 924 WEDAYRI 930 (1636)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=76.34 Aligned_cols=49 Identities=43% Similarity=0.911 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005856 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC 277 (673)
Q Consensus 229 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 277 (673)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-08 Score=94.14 Aligned_cols=241 Identities=14% Similarity=0.114 Sum_probs=153.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHH
Q 005856 305 FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (673)
Q Consensus 305 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (673)
...+++...+..+++.|+.-+....... .++.-++....+|...|.+........+.++.+...+..... -...+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl--Iak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL--IAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH--HHHHHH
Confidence 3445555556666666666666666543 344445555566666666666666666655544221111000 011122
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcC
Q 005856 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLRKG 463 (673)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 463 (673)
.+..+|.+.++++.+...|.+...... ++.+ ..+....+++........-.+ |.. .-...-...+.+.|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~R-t~~~-------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHR-TPDL-------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhc-CHHH-------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhcc
Confidence 234466677889999999988665541 1222 222334445554444443322 222 12222356678899
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
++..|+..+.++++.. +.|...|.....+|.+.|.+..|++-.+..++.++. ....|..=+.++....+|++|++.|+
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 556778888888999999999999999999888554 45666666777777889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHc
Q 005856 544 LMMQSGSVPNFDSLLSVLSE 563 (673)
Q Consensus 544 ~~~~~~~~p~~~~~~~~~~~ 563 (673)
+.++ ..|+...+++.+.+
T Consensus 451 eale--~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 451 EALE--LDPSNAEAIDGYRR 468 (539)
T ss_pred HHHh--cCchhHHHHHHHHH
Confidence 9988 66887666666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=75.66 Aligned_cols=49 Identities=49% Similarity=0.815 Sum_probs=31.5
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005856 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (673)
Q Consensus 194 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 242 (673)
||..+||.++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-05 Score=80.43 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=104.0
Q ss_pred HHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH
Q 005856 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM 143 (673)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 143 (673)
......|..++|..+|.+..+. ..+=..|...|.+++|.++-+.-.+.. =..+|..-...+-..++.+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHH
Confidence 3445778899999999887653 344456778899999988876544321 1234555555566667788
Q ss_pred HHHHHHHHHH----------hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005856 144 MAKRYFNKML----------SEGI---------EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204 (673)
Q Consensus 144 ~A~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (673)
.|++.|++.. ...+ ..|...|.-....+-..|+.+.|+.++..+.. |-++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 8888776531 1110 11222333333333345666666666554432 345566
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 205 GYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
..|-.|+.++|-++-++-. |......+.+.|...|++.+|...|.+.+
T Consensus 947 I~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666778887777765532 55666778888888888888888887664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-07 Score=79.68 Aligned_cols=420 Identities=15% Similarity=0.144 Sum_probs=220.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 005856 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT-MIKGYV 242 (673)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 242 (673)
+.+.+..+.+..+++.|++++..-.++... +....+.|..+|....++..|-..++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 444555555666677777776666555322 5556666666777777777777777776653 333333332 133445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLP--GLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (673)
+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++.... .+..+.........+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHHH
Confidence 666777777777666542 22222111122 234567777777777665432 245555566666677888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHH
Q 005856 321 AADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAE 400 (673)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 400 (673)
|.+-|....+-+--.....|+.. -+..+.+++..|++...+++++++...|+-++...... ++.- ..|+ ..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg----iDvr-svgN---t~ 233 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG----IDVR-SVGN---TL 233 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc----Cchh-cccc---hH
Confidence 88888877765422333345433 35557788888888888888877654444333211110 0000 0000 00
Q ss_pred HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 401 IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
.+.... -...+|.-...+.+.++++.|.+.+..|.-+ ....|+.|...+.-.- -.+++.+..+-+.-+...+
T Consensus 234 ~lh~Sa------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 234 VLHQSA------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHHHH------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 111110 1134555555667778888888777777532 2334556654443222 2344555555555555433
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCH-HH
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKILEALLM-RGHVEEALGRIDLMMQSGSVPNF-DS 556 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~-~~ 556 (673)
. -...||..++-.||+..-++.|..++.+-...-.+ .+...| .++.++.. .-.+++|.+-++.+...-. ... ..
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l~-~kLRkl 383 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGMLT-EKLRKL 383 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2 34567777777888887777777766553222111 122222 34455443 3366666655544432100 000 00
Q ss_pred HHHHHH-c-cCC---hHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 557 LLSVLS-E-KGK---TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 557 ~~~~~~-~-~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+.+-. + ..+ ...|++-++.+++. --......++.++...++..+.++|+.-++-.
T Consensus 384 Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 384 AIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 011100 1 111 11222223333332 12334466788889999999999999877644
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-07 Score=82.15 Aligned_cols=294 Identities=11% Similarity=0.025 Sum_probs=178.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHH-HHHHHHHHHHhcC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDED-MFEVLIESYGKKG 105 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~ 105 (673)
-..+...|++..|+..|-.+.+-+ |.+-.++..-..+|...|....|+.=+..+++. .||.. ....-...+.++|
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 446778889999999999998766 667777777888899999999888888888775 34432 2223345678999
Q ss_pred CHHHHHHHHHHHHHcCCccC--HhhHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005856 106 IVQESVKIFDIMKQLGVERS--VKSYD------------ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~--~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (673)
.++.|..-|+...+...... ...+. ..+..+...|+...|+.....+++. .+-|...|..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHH
Confidence 99999999999988642111 11111 1122344568888888888888775 345677777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH----H---------H
Q 005856 172 FLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT----M---------I 238 (673)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l---------l 238 (673)
...|++..|+.=+....+..-. ++..+--+-..+...|+.+.++...++.++. .||...... | +
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777665333 5566666667777788888888888887765 344432111 1 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhcc
Q 005856 239 KGYVAVERADDALRIFDEMKSFDVKPNAV---TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS 315 (673)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (673)
......+++.++++-.+...+........ .+..+-.++...+++.+|++...+++. +.|+|..++..-..+|.-.
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhh
Confidence 12223344444444444444331110111 122233333444455555555555444 2343444555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 005856 316 GHLNAAADVLKAMIR 330 (673)
Q Consensus 316 g~~~~a~~~~~~~~~ 330 (673)
..++.|+.-|+...+
T Consensus 355 E~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555554444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-07 Score=88.09 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCch--hhHHHHHH
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH-SPAS--SLFRSVME 492 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~ 492 (673)
....+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++...... .|+. ..+..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33444445555555555555555555542 22344455555555555555555555555544211 1111 12233444
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~ 511 (673)
.+...|++++|..+++++.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 4555555555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-06 Score=86.94 Aligned_cols=166 Identities=15% Similarity=0.031 Sum_probs=97.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HhHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDA--DAYICLIES 458 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~~ 458 (673)
....+...+...|++++|...+++..+..+.++..+..+..++...|++++|...++....... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344556677788888888888888888777777888888888888888888888888776422 1222 345567778
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CCchhhH-H--HHHHHHhccCCHHHHHHH--H-HHHHHcCC-CCCHHHHHHHHHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGH-SPASSLF-R--SVMESLFEDGRVQTASRV--M-KSMVEKGV-KENLDLVAKILEALL 530 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~ 530 (673)
+...|++++|..++++...... .+..... . .++.-+...|..+.+.++ + ........ ..........+.++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 8888888888888888754221 1111111 1 222223333432222222 1 11111100 001111124555666
Q ss_pred cCCCHHHHHHHHHHHHh
Q 005856 531 MRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (673)
..|+.++|..+++.+..
T Consensus 276 ~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 276 GAGDKDALDKLLAALKG 292 (355)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 77777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-05 Score=85.93 Aligned_cols=379 Identities=10% Similarity=-0.039 Sum_probs=226.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005856 166 VMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (673)
Q Consensus 166 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 245 (673)
.....+...|++.+|.......... ..-..............|+++.+...++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344556677777666544433211 00011111122334456788877777766532111112222334455566789
Q ss_pred CHHHHHHHHHHHHhCC--C----CCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcH----HhHHHHHHHHh
Q 005856 246 RADDALRIFDEMKSFD--V----KPNAV--TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN----SVFMKLLGVQC 313 (673)
Q Consensus 246 ~~~~a~~~~~~~~~~~--~----~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 313 (673)
+++++..++......- . .+... ........+...|+++.|...+++..... ...+. .....+...+.
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH
Confidence 9999999888775421 0 11111 12223344567899999999999987642 22122 23455666778
Q ss_pred ccCChHHHHHHHHHHHhCCC---CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHH
Q 005856 314 KSGHLNAAADVLKAMIRLSI---PT--EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQ 388 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (673)
..|+++.|...+.+...... .+ .......+...+...|+++.|...+++.++...... ..........+..+..
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH-LEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHH
Confidence 89999999999988765311 11 123445566778889999999999998876432100 0000112233445556
Q ss_pred HHHccCCHhHHHHHHHHHHHcC---CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHH--hH--HHHHH
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKG---VL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDAD--AY--ICLIE 457 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~--~~--~~l~~ 457 (673)
.+...|+++.|...+....... .+ ....+..+...+...|++++|...++.+... ....... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6777899999999988876542 11 2334555677788899999999998887542 1111111 10 11224
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCch---hhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEAL 529 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 529 (673)
.+...|+.+.|...+............ ..+..+..++...|++++|...++++... +... ...+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445678899998887765432111111 11345566778899999999999988764 3222 123455677888
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 005856 530 LMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~ 548 (673)
.+.|+.++|.+.+.+..+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-05 Score=74.80 Aligned_cols=170 Identities=10% Similarity=0.060 Sum_probs=127.3
Q ss_pred HhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-DADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
.+.....++++.... ..-..+|..+++.-.+..-++.|..+|.++.+.+..+ ++..+++++..+|. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 556667777776665 3444578888998889999999999999999987766 77788888887774 77889999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C-
Q 005856 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMMQS-G- 549 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~- 549 (673)
--++. +..+..-....+.-+...++-..+..+|++++..+..+ ....|..++..-..-|+...++++-+++... +
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 87763 33444555667777888899999999999999885444 4578999999888999999999988877652 1
Q ss_pred -CC---CCHHHHHHHHHccCCh
Q 005856 550 -SV---PNFDSLLSVLSEKGKT 567 (673)
Q Consensus 550 -~~---p~~~~~~~~~~~~g~~ 567 (673)
.. +....+++.|.-.+.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 22 2234456666544443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-07 Score=91.44 Aligned_cols=256 Identities=15% Similarity=0.147 Sum_probs=173.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 005856 276 LCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDR 355 (673)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (673)
+.+.|++.+|.-.|+..+.. .|.+..+|..|.......++-..|+..+.+.++.+ +.+....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 46788899999999888886 57688899999999999888889999998888875 5667777788888888888889
Q ss_pred HHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCHHhHHHHHHHHHhcCChhHH
Q 005856 356 AIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSA 433 (673)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 433 (673)
|++.++..+.......-.....++...-.. ..+..........++|-.+.... ..|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886643110000000000000000 01111122233444555554444 37888888888888888889999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-hhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005856 434 FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTASRVMKSMVE 512 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (673)
...|+.+.... +-|..+||.|...++...+.++|+..|.+.++ +.|+. .....+.-+|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88888888753 33677888888888888888888888888886 45663 3445556678888888888888877665
Q ss_pred cC---------CCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 513 KG---------VKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 513 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
.. ..++..+|..|=.++...++.|-+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 41 1123345665555555555555433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-08 Score=91.34 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=89.1
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcC
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKG 463 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 463 (673)
..+...|+++.|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+...+..++. -.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 3445566666666655432 345555666667777777777777777776542 23 22223333332 223
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV-EEALGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 542 (673)
.+.+|..+|+++.+ .+.++..+.+.+..++...|++++|.+++.+..+.++. +..++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 56777777777654 34566666666777777777777777777776665544 455666666666666665 4555666
Q ss_pred HHHHhCCCCCCHH
Q 005856 543 DLMMQSGSVPNFD 555 (673)
Q Consensus 543 ~~~~~~~~~p~~~ 555 (673)
.++.. ..|+..
T Consensus 260 ~qL~~--~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQ--SNPNHP 270 (290)
T ss_dssp HHCHH--HTTTSH
T ss_pred HHHHH--hCCCCh
Confidence 66665 445433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-07 Score=90.54 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=183.9
Q ss_pred HHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 005856 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 469 (673)
+.+.|+...|.-.|+..++..|.+...|..|.......++-..|+..+++..+... -+......|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHHH
Confidence 46789999999999999999999999999999999999999999999999998643 36788888888999999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHH-H-------HHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 470 TALDSMIEDGHSPASSLFRSV-M-------ESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l-~-------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
+.++.-+... |.......- . ..+..........++|-.+... +.++|..+...|.-.|.-.|++++|++
T Consensus 374 ~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999987642 110000000 0 1222233344555566555544 545788888889999999999999999
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 541 RIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 541 ~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.|+.++. .+|+ |+.++-.++...+.++|+..|.++++..|.--... ..|+-.|...|.|++|.+.|-.++.-.
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-yNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-YNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-hhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999998 8898 55666677778899999999999999865433334 479999999999999999998877521
Q ss_pred C---------CCCHHHHHHHHHHHHhcCCcchH
Q 005856 617 G---------VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 617 ~---------~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
. .+.-.+|..|=.++...++.|.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 1 11123445555555666665533
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-05 Score=76.27 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=160.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 111 (673)
..+++..|++....+++.+ |....+-..-.-.+.+.|..++|..+++.....+.. |..+...+-.+|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 5678999999999999987 444444444444567999999999999887666555 8888999999999999999999
Q ss_pred HHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHH
Q 005856 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSL-K---------LETAI 181 (673)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~ 181 (673)
.+|++..+.. |+......+..+|.+.+++.+-.+.--++.+. .+-+...|-++++.....- . ..-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999998854 77777777888889988887766555555443 4446666666666655331 1 23466
Q ss_pred HHHHHHHhCC-CCcCHHHHHHHHHHHHcCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 182 RFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFA-EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
+.++.+.+.+ .--+..-....+..+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6677776654 22222333334455667899999999983 344433333455556777888889999999999999888
Q ss_pred CC
Q 005856 260 FD 261 (673)
Q Consensus 260 ~~ 261 (673)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 75
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-06 Score=95.37 Aligned_cols=337 Identities=10% Similarity=0.025 Sum_probs=211.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCC------CC--hhhHHHHHHHH
Q 005856 276 LCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIP------TE--AGHYGILIENF 347 (673)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 347 (673)
....|++..+...+..+..... ..++.........+...|+++++...+......--. +. ......+...+
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~-~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVL-LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHH-hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 4456777776666655421111 112333344455566789999999998877543111 11 11122233456
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCC--HHhHHHHH
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLD--PVAFNNLI 421 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~l~ 421 (673)
...|+++.|...++..++.. +...........+.+...+...|+++.|...+++..... .+. ..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL----PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 67899999999999986531 111100012244556666778999999999998876542 111 23456677
Q ss_pred HHHHhcCChhHHHHHHHHHHh----CCCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCc--hhhHHHH
Q 005856 422 RGHSKEGNPDSAFEIVKIMGR----RGVP--R-DADAYICLIESYLRKGEPADAKTALDSMIEDG--HSPA--SSLFRSV 490 (673)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 490 (673)
..+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 788899999999999887654 2211 1 22344556667778899999999998876431 1121 2334445
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcC--CCCCHHH--H--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------HHHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKG--VKENLDL--V--AKILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSLL 558 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~ 558 (673)
...+...|++++|...+..+.... ....... . ...+..+...|+.+.|...+........... ...+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 566778999999999998886541 1111111 0 1122444568899999998876554211111 12455
Q ss_pred HHHHccCChHHHHHHHHHHhcCC----CCCC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRD----CIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.++...|++++|...+++++... .... ...+..++.++.+.|+.++|.+.+.++++...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 66778999999999999888642 1111 33456788899999999999999999998543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-06 Score=84.47 Aligned_cols=220 Identities=17% Similarity=0.159 Sum_probs=175.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
+|--..-..+...+...|-...|..+|++. ..|..++.+|+..|+..+|..+..+..+ .+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d 456 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPD 456 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc
Confidence 444444556778889999999999999987 2688899999999999999999988887 6789
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (673)
+..|..+++......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ 528 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCA 528 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHH
Confidence 999999998888888888888888765432 22222233345789999999998877643 3445678888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHccCChHHHH
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTIAAV 571 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~~A~ 571 (673)
..+.++++.|.+.|.......+. +...|+.+..+|.+.|+-.+|...+++..+.+..|- |........+-|.+++|+
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 88899999999999999887655 788999999999999999999999999998664443 556777777899999999
Q ss_pred HHHHHHhcC
Q 005856 572 KLLDFCLGR 580 (673)
Q Consensus 572 ~~~~~~~~~ 580 (673)
+.+.+.++.
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 999888764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-07 Score=86.58 Aligned_cols=81 Identities=25% Similarity=0.253 Sum_probs=37.8
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHH
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP-ADAKTALD 473 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~ 473 (673)
.+..|..+|+++.+..++++.+.+.+..++...|++++|.+++.+....+. -++.+...++.+....|+. +.+.+.+.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 455555555555444444555555555555555555555555555544321 2344444444444444444 33444444
Q ss_pred HHH
Q 005856 474 SMI 476 (673)
Q Consensus 474 ~~~ 476 (673)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.0001 Score=70.75 Aligned_cols=455 Identities=11% Similarity=0.092 Sum_probs=242.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005856 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (673)
+-|..+|+.|++-+... -++++.+.++++... ++.....|..-+..-.+..+++..+++|.+.+..- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 44788888888876554 888888888888865 34456778888888888888999999998887653 355666665
Q ss_pred HHHHHhc-CCHHH----HHHHHHHHH-hCCCCCCH-HHHHHHH---HHH------HcCCCHHHHHHHHHHHHHCCCCCCc
Q 005856 238 IKGYVAV-ERADD----ALRIFDEMK-SFDVKPNA-VTYTALL---PGL------CDAGKMVEVQKVLREMVERYIPPKD 301 (673)
Q Consensus 238 l~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll---~~~------~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (673)
+..-.+. |+... ..+.|+-.. +.|+.+-. ..|+..+ ... ....+.+.+.+++++++..-+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm---- 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM---- 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc----
Confidence 5543332 22222 223333332 33433322 2233333 222 222344555666666655311
Q ss_pred HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC-CCCCCc-
Q 005856 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ-STLDME- 379 (673)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~- 379 (673)
+++++...=|....+ ..|..+-..++. -+...+..|.++++++.....-.... ..++|.
T Consensus 169 --------------~nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 169 --------------HNLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred --------------ccHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 111111111111111 111111111111 11223445555555543311000000 001110
Q ss_pred -------hhhHHHHHHHHHccC------C--HhHHHHHHHHHHHcCCCCHHhHHHH-------HHHHHhcCCh-------
Q 005856 380 -------ASSYNPMIQHLCHNG------Q--TGKAEIFFRQLMKKGVLDPVAFNNL-------IRGHSKEGNP------- 430 (673)
Q Consensus 380 -------~~~~~~l~~~~~~~~------~--~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~------- 430 (673)
...|...|.--...+ . .....-++++....-...+.+|.-. .+.+...|+.
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 011222222111111 0 1112223333332222233333222 2223333433
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKG---EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM 507 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 507 (673)
+++..+++.....-..-+..+|..+.+.--..- ..+...+.+++.......--..+|..++....+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555544222223444444433211111 24555666666654322222356777777777888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH-HHhCCCCCCHH-HHHHHHHccCChHHHHHHHHHHhcCCCCC
Q 005856 508 KSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDL-MMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGRDCII 584 (673)
Q Consensus 508 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (673)
.++.+.+..+ ++....+++. |...++..-|.++|+- +...|..|.+. .+++.+...++-..|..+|++++.....+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9999987766 4555566665 4556788999999994 55567777753 57888888999999999999999884443
Q ss_pred --ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCcchH
Q 005856 585 --DLASYEKVLDALLAAGKTLNAYSILFKIMEKGG---VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 585 --~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
....|+.+++-=..-|+...+.++-++....-. .+.-..-.++++-|.-.+..+.-
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 367888888888889999999999888665321 11112224566667666665443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.3e-06 Score=76.96 Aligned_cols=203 Identities=8% Similarity=0.004 Sum_probs=122.0
Q ss_pred HHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--H
Q 005856 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP--A 466 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 466 (673)
+...+..++|+.+..++++..|.+..+|+....++...| ++++++..++.+.+.+.+ +..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 445667788888888888887777778877777777776 568888888887775433 555666555555555543 5
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CC----HHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GH----VEEAL 539 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~ 539 (673)
+++.+++++++.. +-+..+|......+...|+++++++.++++++.++. +...|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777777533 345667777777777777777788888877777665 555565555444433 11 23455
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 005856 540 GRIDLMMQSGSVPN----FDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (673)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 598 (673)
++..+++. ..|+ +..+..++.. .++..+|...+.+++..++. +...+..|++.|..
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 55544444 3333 3334444433 13334455555555554322 33344555555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=6e-06 Score=77.92 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=126.4
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
++...++.++|+..+..+++.+ |-+..+|.....++...| .+++++..++.+.+.++. +..+|......+.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 5556677888888888887766 566667777766776666 567788887777766544 555566554444455542
Q ss_pred --HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----H
Q 005856 108 --QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKL----E 178 (673)
Q Consensus 108 --~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~ 178 (673)
++++.+++.+.+.. +.+..+|+....++...|+++++++.++++++.++ .+...|+.....+.+. |.. +
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHH
Confidence 56677777777654 45666777777777777778888888887777643 3555666555544433 222 3
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRF----KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 243 (673)
....+..++....+. |...|+.+...+... +...+|.+.+.+....+ +.+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 455555555554332 556666666655552 23344656665554432 2244555555555553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-07 Score=88.15 Aligned_cols=211 Identities=15% Similarity=0.103 Sum_probs=172.8
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
..+...+...|-...|..+++++ ..|..++.+|...|+..+|..+..+-.+. +|++..|..+.+......
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 45667778889999999999886 45788899999999999999998888773 688999988888877777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
-+++|.++.+..... .-..+.......++++++.+.|+...+.++- -..+|..+..+..+.++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 788888888765431 2223333344579999999999998887543 57888889999999999999999999
Q ss_pred HHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 544 LMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 544 ~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.... ..|+ |+++..+|.+.|+..+|...++++++.+.+ +...|....-...+.|.+++|++.+.++++-
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9988 7777 778999999999999999999999998743 5566666777788999999999999998873
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-06 Score=88.26 Aligned_cols=236 Identities=11% Similarity=0.068 Sum_probs=164.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG-VQ---WDEDMFEVLIESYGKKGIVQESVKIFDIMK 118 (673)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 118 (673)
|++....+ |.+...|...+......++.+.|++++++.+..- +. --..+|.++++.-..-|.-+...++|+++.
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444444 6777888888888888888888888888876541 11 124567777777777777888888888887
Q ss_pred HcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHH
Q 005856 119 QLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGIS-LDVV 197 (673)
Q Consensus 119 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 197 (673)
+. --....|..|...|.+.+.+++|.++++.|.+. .......|..++..+.+..+-+.|..++.++.+.-.. -...
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 73 233456778888888888888888888888765 3346667888888888888888888888887765211 1234
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 005856 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA--VTYTALLPG 275 (673)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~ 275 (673)
...-.+..-.+.|+.+.+..+|+.....- +.-...|+..++.-.+.|+.+.+..+|++....++.|-. ..|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 44555566677888888888888877652 335677888888888888888888888888877655543 344555544
Q ss_pred HHcCCCHHH
Q 005856 276 LCDAGKMVE 284 (673)
Q Consensus 276 ~~~~~~~~~ 284 (673)
--..|+-..
T Consensus 1681 Ek~~Gde~~ 1689 (1710)
T KOG1070|consen 1681 EKSHGDEKN 1689 (1710)
T ss_pred HHhcCchhh
Confidence 444454333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-06 Score=80.25 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-R-DADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
.+..+..++..+...|++++|...++.+...... | ...++..+..++...|++++|...++++.+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555543211 0 012344455555555555555555555554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-06 Score=88.01 Aligned_cols=213 Identities=11% Similarity=0.141 Sum_probs=140.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
|.++..|-..|....+.++.+.|.++.++++..-- +++. .--...|.++++.-...|.-+...++|+++.+.. ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN-~REe---eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~ 1529 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTIN-FREE---EEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DA 1529 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC-cchh---HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-ch
Confidence 44455666677777777778888877777764210 0000 0112356666666666677777777777776653 22
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CchhhHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PASSLFRSVME 492 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~ 492 (673)
..+|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.+.++-+.|..++.+.++.-.. -........+.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 346777777888888888888888877764 2245667777777777777777788888777763211 12233344445
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.-.+.|+.+++..+|+..+...++ ....|+.+++.-.++|+.+.+..+|+++.+.++.|.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 556778888888888877776555 567777777777778888888888888777666665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.7e-06 Score=85.34 Aligned_cols=225 Identities=12% Similarity=0.130 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 005856 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (673)
Q Consensus 265 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (673)
+...+..++..+...+++++|.++.+...+. .|+....+..++..+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3446666777777777777777777766553 454555555555566666654444433 2 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH 424 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (673)
..+....++..+..++..+.+.. -+...+..+..+|.+.|+.++|..+++++.+..+.++.+.|.+...|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 22223333333333333332211 12336667777788888888888888888888777888888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHH
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTAS 504 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 504 (673)
+.. ++++|.+++..+... +...+++.++.++|.++.... |+.. +.-.
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~ 207 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDF---------------DFFL 207 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccc---------------hHHH
Confidence 877 888888777776653 555667777888888877632 3221 1112
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 505 RVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 505 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.+.+.+... +..--..++..+...|...++|++++++++.+++ ..|+
T Consensus 208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~ 255 (906)
T PRK14720 208 RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNK 255 (906)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCc
Confidence 222222222 2222345566667777777888888888888888 4444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-06 Score=74.75 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=111.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++..++.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457778887776444332211 11 0122367778888888888888766 788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHH-HccCC--hHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 005856 536 EEALGRIDLMMQSGSVPNF----DSLLSVL-SEKGK--TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSI 608 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~~----~~~~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 608 (673)
++|+..+++... ..|+. ..++.++ ...|+ .++|..+++++++.+++ +...+..++..+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999888 55652 3455544 45666 59999999999998866 566777899999999999999999
Q ss_pred HHHHHHcCCCCC
Q 005856 609 LFKIMEKGGVTD 620 (673)
Q Consensus 609 ~~~~~~~~~~~~ 620 (673)
++++++...+.+
T Consensus 167 ~~~aL~l~~~~~ 178 (198)
T PRK10370 167 WQKVLDLNSPRV 178 (198)
T ss_pred HHHHHhhCCCCc
Confidence 999998765444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-06 Score=88.88 Aligned_cols=133 Identities=12% Similarity=0.019 Sum_probs=99.1
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----H
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF----D 555 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~ 555 (673)
+..+...+..|.....+.|.+++|..+++...+..+. +......++..+.+.+++++|+..+++.+. ..|+. .
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4455677777778888888888888888888887555 566667778888888888888888888877 55653 3
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+..++.+.|++++|..+|++++..++. +...+..++..|...|+.++|...|+++++..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3555666788888888888888875432 35566678888888888888888888887754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-06 Score=78.31 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=124.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch----hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--H
Q 005856 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS----SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--D 520 (673)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 520 (673)
.....+..+...+...|++++|...++++.... |+. ..+..+..++...|++++|...++++.+..+.... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456677888888899999999999999988643 332 35677778888999999999999999887553222 2
Q ss_pred HHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 521 LVAKILEALLMR--------GHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 521 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
.+..+..++... |++++|++.++++.. ..|+......++...+..... . ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~~~~~---~-----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDYLRNR---L-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHH---H-----------HHHHHHH
Confidence 455566666654 678888888888887 445532222221111111110 0 0112356
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 593 LDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
+..+.+.|++.+|+..+++++.... +.....+..++.++.+.|++++|....+.+.+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888888888888888887542 22356667788888888888888776666553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-06 Score=85.05 Aligned_cols=235 Identities=11% Similarity=0.103 Sum_probs=159.5
Q ss_pred chhhHHHHHHHHHccCCHhHHH-HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAE-IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
++.....+=.+.+..|..++|- +++.++. .++..........+++.-.....+ ..+.+...+..|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR-----------QVLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH-----------HHHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 3434444445566677766663 3443332 233333333333333333333322 25567899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (673)
...+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.....+. +......+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchH
Confidence 999999999999999999874 465 456667788899999999999999999998776 7788888999999999999
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 537 EALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 537 ~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
+|..+|+++.. ..|+ +..+...+-..|+.++|...|+++++.. .+....|+.+ .++...-..++++.
T Consensus 172 ~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 172 QADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH------HHHHHHHHHHHHHc
Confidence 99999999998 3344 4457777778999999999999999874 2223333222 23344444555554
Q ss_pred HHcC----CCCCHHHHHHHHHHHHhcCCc
Q 005856 613 MEKG----GVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 613 ~~~~----~~~~~~~~~~l~~~~~~~g~~ 637 (673)
--.+ .+.....+.+.+.-+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T PRK15179 243 GVEGDGRDVPVSILVLEKMLQEIGRRRNA 271 (694)
T ss_pred CcccccCCCceeeeeHHHHHHHHhhcCcc
Confidence 3222 223456666777777655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.7e-06 Score=71.18 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 134 (673)
+..+ ......+.-.|+-+....+........ +.+.......+....+.|++..|...|.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 445555555566555555555543322 2244455556666666666666666666665543 455666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 005856 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214 (673)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 214 (673)
+|.+.|+++.|..-|.+..+.- .-+...++.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 6666666666666666665541 223444555555566666666666666666554322 55555555556666666666
Q ss_pred HHHHHHH
Q 005856 215 AEKLFAE 221 (673)
Q Consensus 215 a~~~~~~ 221 (673)
|.++...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 6665544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.001 Score=68.30 Aligned_cols=504 Identities=14% Similarity=0.092 Sum_probs=276.8
Q ss_pred CCCChHHHHH--HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHH
Q 005856 19 PQFDHNLVYN--VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (673)
Q Consensus 19 ~~~~~~~~~~--~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (673)
|+.....++. ++.+.|+.++|..+++...... +.|..++..+-.+|...+..++|..+|++..... |+......
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHH
Confidence 4555555555 6678999999998888776554 5688899999999999999999999999998764 56888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhCC-CCCCHHHHH
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR----------YMMAKRYFNKMLSEG-IEPTRHTYN 165 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~-~~~~~~~~~ 165 (673)
+..+|.+-+++..-.+.--++-+ ..+.+...+=++++.+...-. ..-|...++.+.+.+ .--+..-..
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 88999998888664444434333 123444444444554443311 234556667776553 222222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 005856 166 VMLWGFFLSLKLETAIRFFED-MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY--- 241 (673)
Q Consensus 166 ~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--- 241 (673)
.....+-..|.+++|.+++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...|.. | |...+..+
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~kl 270 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKL 270 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHH
Confidence 333445577899999999843 333323334555567778888899999999999998887632 2 22222211
Q ss_pred -------------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHCCCCCCcHHhH
Q 005856 242 -------------VAVERADDALRIFDEMKSFDVKPNAVTYTALLPG---LCDAGKMVEVQKVLREMVERYIPPKDNSVF 305 (673)
Q Consensus 242 -------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 305 (673)
...+..+...+...+..... ..+ .|..-+.+ +..-|+.+++...|-+-.. +...+
T Consensus 271 Le~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rg--p~LA~lel~kr~~~~gd~ee~~~~y~~kfg------~kpcc 341 (932)
T KOG2053|consen 271 LELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRG--PYLARLELDKRYKLIGDSEEMLSYYFKKFG------DKPCC 341 (932)
T ss_pred HHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccC--cHHHHHHHHHHhcccCChHHHHHHHHHHhC------CCcHh
Confidence 11122333333333332221 111 22222222 2345777776544432211 11222
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCChh----h---HHHHHHHHHhcCC-----HHHHHHHHHHHHH---chhcc
Q 005856 306 MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG----H---YGILIENFCKAEM-----YDRAIKLLDKLVE---KEIIL 370 (673)
Q Consensus 306 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~---~~~l~~~~~~~~~-----~~~a~~~~~~~~~---~~~~~ 370 (673)
..=+..|...=..+.-..++....... ++.. . +...+..-.-.|. -+....++.+... .+..
T Consensus 342 ~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls- 418 (932)
T KOG2053|consen 342 AIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS- 418 (932)
T ss_pred HhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc-
Confidence 222233333333333334443333221 1111 0 1111111111121 2222333322211 1100
Q ss_pred CCCCCCCCchh---------hHHHHHHHHHccCCHh---HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 005856 371 RPQSTLDMEAS---------SYNPMIQHLCHNGQTG---KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVK 438 (673)
Q Consensus 371 ~~~~~~~~~~~---------~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 438 (673)
-..+.-|+.. +.+.+++.|-+.++.. +|+-+++......+.+..+-..+++.|+-.|-+..|.++|+
T Consensus 419 -~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 419 -LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred -ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 1111222222 3356778888887655 56666666666778888888999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHH---HHHHHcCC
Q 005856 439 IMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM---KSMVEKGV 515 (673)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~ 515 (673)
.+.-.++..|...|. +...+...|++..+...+....+.--..-..+-..+..+ .+.|.+....++. +++.....
T Consensus 498 tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q 575 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQ 575 (932)
T ss_pred hcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHH
Confidence 987766666655443 344556677888777777766542111111222233333 3456665554432 22222111
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 516 KENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 516 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
..-..+-+..+..+...++++.-...++.|.
T Consensus 576 ~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 576 KWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1112223455666667777777766666555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=69.87 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcC
Q 005856 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (673)
.++++.++.+ +..+......+...|++++|...++..+. ..|+ +..++.++...|++++|...+++++..
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555542 22344566677777777777777777776 4454 344666666778888888888877777
Q ss_pred CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 581 ~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+|. +...+..++.++...|++++|++.+++++...
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 654 45555677778888888888888888877653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-05 Score=69.68 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc
Q 005856 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (673)
Q Consensus 418 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (673)
..+-..+...|+-+....+....... .+.+......++....+.|++.+|...+++... .-++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHc
Confidence 33334444444444444443333221 112333333344444444444444444444443 2234444444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|+++.|..-|.+..+..+. +...++.+...|.-.|+.+.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444444444222 223334444444444444444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-05 Score=82.84 Aligned_cols=245 Identities=13% Similarity=0.075 Sum_probs=147.1
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...+..|+..+...+++++|..+.+...+..|.....|..++..+...++.+.+..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 4557888999999999999999999988888777777777777778777776666555 222 22
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
.....++.-...+...+.+. .-+...+..+..+|.+.|+.++|..+++++++.++. |..+.+.++..|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 22223332222233333332 234446667777777888888888888888887754 777777788777777 88888
Q ss_pred HHHHHHHHhCCC---CCC-HHHHHHHHHc--cCChHHHHHHHHHHhcC-CCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 539 LGRIDLMMQSGS---VPN-FDSLLSVLSE--KGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 539 ~~~~~~~~~~~~---~p~-~~~~~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
++++.+.+..-+ .++ ...+..-++. -.+.+.-..+.++.... +..--...+..+...|-+.++|++++.+++.
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 887777665211 011 1111111111 12233333333333322 1111123344555666678889999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 005856 612 IMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMI 647 (673)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (673)
+++...... .....++.+|. ++++.-..+.+.+
T Consensus 249 iL~~~~~n~-~a~~~l~~~y~--~kY~~~~~~ee~l 281 (906)
T PRK14720 249 ILEHDNKNN-KAREELIRFYK--EKYKDHSLLEDYL 281 (906)
T ss_pred HHhcCCcch-hhHHHHHHHHH--HHccCcchHHHHH
Confidence 998764433 34455777776 4444433333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.6e-06 Score=73.15 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=75.1
Q ss_pred cCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHH-HHcCC--HHHH
Q 005856 69 VGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI-LRRGR--YMMA 145 (673)
Q Consensus 69 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~g~--~~~A 145 (673)
.++.+++...++..++.++. +...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44556666666666555433 66677777777777777777777777776654 34555666665543 45555 4677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 146 KRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
..++++..+.++ -+..++..+...+...|++++|...|+.+.+.
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777766532 25556666666666777777777777777665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-05 Score=65.88 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=24.0
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
.+.+|.-+|+++.+..+|++.+.+....++...|++++|..+++.+...
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444455555544444444445555555555555555555555544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00015 Score=63.34 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=82.1
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cC
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KG 463 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 463 (673)
..|++.+++++|++..+... +......=+..+.+..+++-|...++.|.+- .+..|.+.|..++.+ .+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 34555666666665555411 2222222333444555666666666666653 244455555555443 24
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH-HHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA-LGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~ 542 (673)
...+|.-+|++|-+ ...|+..+.+....++...|++++|..+++.++....+ ++.+...++.+-...|...++ .+.+
T Consensus 188 k~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45666667777654 24566666666666666677777777777777666554 455554454444445544333 3455
Q ss_pred HHHHh
Q 005856 543 DLMMQ 547 (673)
Q Consensus 543 ~~~~~ 547 (673)
.++..
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 55554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00011 Score=63.58 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchh-hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEAS-SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (673)
.+.++..+++..++... ......++.. .|..++-+....|+.+.|...++.+....|.+..+-..-...+-..|+
T Consensus 26 rnseevv~l~~~~~~~~----k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYS----KSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHh----hhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc
Confidence 34556666666554432 1111223332 233344445556666666666666666655555544444444555566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
+++|.++++.+.+.+ +.|..++..=+...-..|+.-+|++-+....+ -+..|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666554 33445555444444455555556555555554 2445566666666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHh
Q 005856 510 MVEKGVKENLDLVAKILEALLMRG---HVEEALGRIDLMMQ 547 (673)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 547 (673)
++-..+. ++..+..+...+.-.| +..-|.++|.+.++
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6554332 3444444444444333 34445555555555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.3e-06 Score=67.52 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=57.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+......+...|++++|...|+.++...+. +...|..++.++...|++++|+..|++... ..|+ +..++.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 334455566666666666666666665444 556666666666666666666666666666 3343 234555556
Q ss_pred ccCChHHHHHHHHHHhcCCC
Q 005856 563 EKGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~ 582 (673)
..|++++|+..++++++..|
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 66677777777766666543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=53.71 Aligned_cols=30 Identities=47% Similarity=0.939 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 227 IEPTVISYTTMIKGYVAVERADDALRIFDE 256 (673)
Q Consensus 227 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (673)
+.||..+|++||.+|++.|+.++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00082 Score=64.29 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=58.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHH
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTA 503 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 503 (673)
...|.+++|+..++.+... .+-|+..+......+...++.++|.+.++++... .|+ ......+..++.+.|++++|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555555555555443 2234444455555555555555555555555542 233 33344445555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 504 SRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (673)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (673)
+.+++......+. ++..|..|.++|...|+..+|...
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHH
Confidence 5555555554333 455555555555555555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00017 Score=68.78 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=132.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 491 (673)
++.......+.+......-..+..++..-.+ +--...+....-.+...|++++|+..++.++.. .+-|...+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 4455555555544333332233222222222 112333444445566789999999999998873 344555566667
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHccCChHH
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPN-FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~~~~~~g~~~~ 569 (673)
+.+.+.|+..+|.+.++++....+. ....+..+..+|.+.|++.+|+.++++... .+..|+ |..+..+|...|+..+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 7889999999999999999988554 255666788999999999999999987776 344455 6778888888888777
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG--GVTDWKSSDKLIAG 630 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 630 (673)
|... .++.|.-.|++++|+.++.++.+.. +.++|.-+...+..
T Consensus 427 a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 427 ALLA------------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHHH------------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 6433 4566777999999999999988754 45666555544443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-07 Score=53.48 Aligned_cols=32 Identities=56% Similarity=0.867 Sum_probs=18.1
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 005856 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (673)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (673)
|+.||..+|+.++++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00022 Score=61.79 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCCh
Q 005856 244 VERADDALRIFDEMKS---FD-VKPNAV-TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (673)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++..+- |.+..+...-...+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3456677777766643 23 344443 45556666677788888888888877763 54555555555556667788
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhH
Q 005856 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (673)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (673)
++|+++++.+++.+ |.|..++-.-+......|+.-+|++-+...++.. ..|...|.-+...|...|++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---------~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---------MNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHhHhHHHH
Confidence 88888888877765 5555556555556666677667777776666554 2466777777777777788888
Q ss_pred HHHHHHHHHHcCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 005856 399 AEIFFRQLMKKGVLDPVAFNNLIRGHSKEG---NPDSAFEIVKIMGRR 443 (673)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~ 443 (673)
|.-.++++.-..|.++..+..+...+.-.| +...|.++|.+..+.
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 877777777777777777777766654443 455567777777664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-05 Score=65.50 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=71.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHccCChH
Q 005856 496 EDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF-----DSLLSVLSEKGKTI 568 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~~~~~~g~~~ 568 (673)
..++...+...++.+.+..+... ....-.+...+...|++++|...|+.+......|.. ..+..++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36677777777777776643321 222334556667777777777777777775433332 22555666777777
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 569 AAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
+|+..++..... ...+..+...+++|.+.|++++|++.|+++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777642221 223455567778888888888888877764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-05 Score=65.01 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005856 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (673)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 121 (673)
.|+.+...+ |.+......++..+...|++++|.+.++.+...++ .+...+..+...+...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344454443 34445555566666666666666666666655432 255666666666666666666666666665543
Q ss_pred CccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
+.+...+..+...+...|+++.|...|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555666666666666666666666553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-05 Score=64.64 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA---SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVAKI 525 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 525 (673)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777643 222 122333446677788888888888888877544332 233456
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHccCChHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCL 578 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~ 578 (673)
...+...|++++|+..++.....+..|. ....++++...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777888888888888866444344443 3346777778888888888887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00021 Score=58.56 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=108.8
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCC-HH
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG---SVPN-FD 555 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~ 555 (673)
..|+...-..+..++.+.|++.+|...|++...--+-.|....-.+..+....+++..|...++.+.+.+ -.|+ ..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3477777778888999999999999999998887666688888889999999999999999999888843 3444 34
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+...|...|++++|...|+.+++.-+.+....| ++..+.+.|+.++|...+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHH
Confidence 5788889999999999999999987666555555 68889999999998877766655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=64.71 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=64.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.++++++.++. +......++..+...|++++|.+.++.+.. ..|+ +..++..+...|++++|..+++++++.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444333 334445566666666777777777766665 2232 2345555556677777777777666665
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 582 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+. +...+..++.++...|++++|.+.++++++..
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33 34445567777777777777777777777653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.7e-05 Score=60.49 Aligned_cols=96 Identities=10% Similarity=-0.065 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+......+...+...|++++|.++|+-+.. +.|. +..++-++...|++++|+..+.++...+++ ++..+.+++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 345556677778889999999999988877 5565 345666677889999999999999988863 667777899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 005856 594 DALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.++.+.|+.+.|.+.|+.++...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999888654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00019 Score=66.66 Aligned_cols=259 Identities=11% Similarity=-0.027 Sum_probs=161.4
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHH
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPAD 467 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (673)
..+.+...+..|+..+....+..+.+..-|..-+..+...+++++|.--.+.-.+.... ....+...-.++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 34556778888888888888888877777777777777778888777666554432110 11122222333333333333
Q ss_pred HHHHHH---------------HHHHcCC-CCchhhHHHHH-HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 468 AKTALD---------------SMIEDGH-SPASSLFRSVM-ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 468 A~~~~~---------------~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
|.+.++ ....... +|.-.++..+- ..+...|++++|...--.+++.+.. +......-..++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccc
Confidence 332222 1111111 12223343332 2455678899998888888777544 3443333344556
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHccCChHHHHHHHHHHhcCCCCC---ChHhHHH
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPNFDSL----------------LSVLSEKGKTIAAVKLLDFCLGRDCII---DLASYEK 591 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~~~----------------~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ 591 (673)
-.++.+.|...+++.+. ..|+.... +.-..+.|++..|.+.+..++..+|.+ ....|..
T Consensus 215 y~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 67788999999988887 66663321 223346899999999999999887654 3555777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
.+.+..+.|+.++|+.-++.+++-.. .-...+..-..|+...++|++|..=.+...+.+
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888889999999999998887642 234444445566777888888855544444444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=9e-05 Score=71.44 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=84.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVL 561 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~ 561 (673)
....++..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|++++++.++ ..|.... ....|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 34455555666778888888888887764 33 334467777777777888888877776 3343222 33445
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
...++++.|+.+.++++...|. +...|..|+.+|.+.|++++|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 5778888888888888887543 577777888888888888888887776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00045 Score=64.28 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=87.8
Q ss_pred HHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHH
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 468 (673)
++.-.|+++.|...--.+++....+......-..++-..++.+.|...|++....+ |+...-... -.-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~ 245 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMM 245 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhh
Confidence 34445666666666666665554444433333334444556666666666655532 332211111 001
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK---GVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (673)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (673)
.+.++.+.+.| .-..+.|++..|.+.+.+.+.. +.+++...|.....+..+.|+.++|+.-.+..
T Consensus 246 ~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 246 PKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 11111111111 2245567777777777777665 33445556666666667777777777776666
Q ss_pred HhCCCCCCHH--HH--HHHHHccCChHHHHHHHHHHhcCC
Q 005856 546 MQSGSVPNFD--SL--LSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 546 ~~~~~~p~~~--~~--~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
++ +.|.+. .+ ..++...+++++|++.++++.+..
T Consensus 314 l~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 314 LK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65 555532 12 222334667777777777777654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00018 Score=69.48 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
...|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++.++.. +-+...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667778888888888887753 44 34456777777777888888888887632 3345555555666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
.++++.|..+.+++.+..+. +..+|..|+.+|...|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888887544 67788888888888888888887776544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00052 Score=55.79 Aligned_cols=94 Identities=10% Similarity=-0.099 Sum_probs=78.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (673)
.+...+...|++++|..+|+-....+|. +...|..|+-++...|++.+|+..|.++..-. +.++..+.++..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3555666899999999999988887755 44555689999999999999999999999875 468888999999999999
Q ss_pred CcchHHHHHHHHHhhh
Q 005856 636 NTKQADILSRMIRGEM 651 (673)
Q Consensus 636 ~~~~a~~~~~~~~~~~ 651 (673)
+.+.|....+......
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999977655555455
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00098 Score=60.59 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=111.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh-h---HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS-L---FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
+...+-.....+...|++++|.+.|+.+...- |+.. . ...++.++.+.+++++|...+++.++..+.-...-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 44444445556677888888888888888643 3322 1 2355667788888888888888888874432222222
Q ss_pred HHHHHHH--cCC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 524 KILEALL--MRG---------------H---VEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 524 ~l~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
....+++ ..+ + ..+|+..++++++ .-|+. .-..+|...+..+.+.-
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S----------~ya~~A~~rl~~l~~~l-- 174 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNS----------QYTTDATKRLVFLKDRL-- 174 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCC----------hhHHHHHHHHHHHHHHH--
Confidence 2222221 111 1 2345556666655 33442 22334433333221110
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 584 IDLASYEKVLDALLAAGKTLNAYSILFKIMEK--GGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 584 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
...-..++.-|.+.|.+.-|+.-++.+++. +.+.....+..++.+|...|..++|......+..
T Consensus 175 --a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 175 --AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred --HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 111225778899999999999999999974 2233455666788999999999999887777653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.3e-05 Score=67.01 Aligned_cols=83 Identities=23% Similarity=0.172 Sum_probs=40.7
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
.+.++|.+|+..|.+.++ +.|. +..-.-+|.+.|.++.|++-.+.++..++. ....|..|+.+|+..|++.+|
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 344455555555555555 4443 122333444555555555555555554322 344455555555555555555
Q ss_pred HHHHHHHHHc
Q 005856 606 YSILFKIMEK 615 (673)
Q Consensus 606 ~~~~~~~~~~ 615 (673)
++.|+++++-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 5555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0003 Score=56.49 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHH
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVL 593 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 593 (673)
++..++..+.+.|++++|.+.++.+.... ..|. ...++.++.+.|++++|..+++.++...+.. ....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666677777777777777766521 1111 2235666667777777777777777654442 234556677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 005856 594 DALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.++.+.|++++|.+.+++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777888888888887777764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=68.21 Aligned_cols=264 Identities=14% Similarity=0.107 Sum_probs=166.7
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHH--Hh--CCCC-CCHHhHHHHHHH
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPV----AFNNLIRGHSKEGNPDSAFEIVKIM--GR--RGVP-RDADAYICLIES 458 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~--~~--~~~~-~~~~~~~~l~~~ 458 (673)
.-+|+.|+......+|+..++.|..|.. +|..|..+|...+++++|+++...= .. .|-. -...+-..|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3468999999999999999999855544 5778889999999999998865421 11 1100 012223334445
Q ss_pred HHhcCChHHHHHHHHHHH----HcCCC-CchhhHHHHHHHHhccCC--------------------HHHHHHHHHHHHHc
Q 005856 459 YLRKGEPADAKTALDSMI----EDGHS-PASSLFRSVMESLFEDGR--------------------VQTASRVMKSMVEK 513 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~ 513 (673)
+--.|.+++|+..-.+-+ +.|-. .....+..+...|...|+ ++.|.++|.+-++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555677777765444332 21211 122344455555544332 34455555543332
Q ss_pred ----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH----hCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcC
Q 005856 514 ----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMM----QSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 514 ----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (673)
|-.. --..|..+...|+-.|+++.|+..-+.-+ +.|.+.. +..+..++.-.|.++.|.+.+++.+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 12345667777778889999997765322 2343332 345777778899999999999887654
Q ss_pred CCC-----CChHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q 005856 581 DCI-----IDLASYEKVLDALLAAGKTLNAYSILFKIMEK----GG-VTDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (673)
Q Consensus 581 ~~~-----~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (673)
..+ .......+|+..|.-..++..|+++..+=+.- ++ .-..+++-.|+.++...|..+.|..+.+.-...
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 222 12344458999999999999999998875431 11 235667777999999999999997776655544
Q ss_pred h
Q 005856 651 M 651 (673)
Q Consensus 651 ~ 651 (673)
.
T Consensus 345 s 345 (639)
T KOG1130|consen 345 S 345 (639)
T ss_pred H
Confidence 4
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.02 Score=53.29 Aligned_cols=254 Identities=16% Similarity=0.181 Sum_probs=155.2
Q ss_pred hcCCHHHHHHHHHHHHHchhccCCCCCCCCch--hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 349 KAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA--SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 349 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
-.|+++.|.+-|+.|.+. |.. -.+..+.-...+.|..+.|..+-+.....-+.-+..+...+...+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-----------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~ 200 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-----------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA 200 (531)
T ss_pred hcCchHHHHHHHHHHhcC-----------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh
Confidence 346666666666666431 111 1223333333456777777777777766666666777778888888
Q ss_pred cCChhHHHHHHHHHHhC-CCCCCHHh--HHHHHHHH--H-hcCChHHHHHHHHHHHHcCCCCchhh-HHHHHHHHhccCC
Q 005856 427 EGNPDSAFEIVKIMGRR-GVPRDADA--YICLIESY--L-RKGEPADAKTALDSMIEDGHSPASSL-FRSVMESLFEDGR 499 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~-~~~~~~~~--~~~l~~~~--~-~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 499 (673)
.|+++.|+++.+.-... -+.++..- -..|+.+- . -.-+...|...-.+..+ +.|+... ......++.+.|+
T Consensus 201 ~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 201 AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccc
Confidence 88888888888765542 22333321 11122211 1 12345566666555554 4465432 3344567889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHH----HHHHHHHccCChHHHHHHH
Q 005856 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFD----SLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~----~~~~~~~~~g~~~~A~~~~ 574 (673)
..++-.+++.+-+..+.|++. .+..+.+.|+ .++.-+++..+ ..++|+.. .+..+-...|++..|..--
T Consensus 279 ~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 279 LRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred hhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999887766543 2333445554 33333333332 12667632 3444555788998888877
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHH
Q 005856 575 DFCLGRDCIIDLASYEKVLDALLA-AGKTLNAYSILFKIMEKGGVTDWKS 623 (673)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 623 (673)
+.+... .|....|..|+++-.. .|+-.++...+-+.+..+..|.|+.
T Consensus 353 eaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 353 EAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred HHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 766664 4556677777777665 4999999999999998877777754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.3e-05 Score=57.97 Aligned_cols=78 Identities=19% Similarity=0.106 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHHHhcCCCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 005856 564 KGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
.|+++.|+.+++++++..+. ++...+..++.+|++.|++++|++++++ .+.+. ......-.++.++.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555666666555555442 1233333456666666666666666655 22111 122222234555666666666644
Q ss_pred H
Q 005856 643 L 643 (673)
Q Consensus 643 ~ 643 (673)
.
T Consensus 80 ~ 80 (84)
T PF12895_consen 80 A 80 (84)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00026 Score=63.18 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..++. -...|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 445556666666666665521 123333444445556666666666665555555433 344555566666666666666
Q ss_pred HHHHHHHHhCCCCCCHH
Q 005856 539 LGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 539 ~~~~~~~~~~~~~p~~~ 555 (673)
++.|++.++ +.|++.
T Consensus 169 ~~aykKaLe--ldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNE 183 (304)
T ss_pred HHHHHhhhc--cCCCcH
Confidence 666665555 555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.7e-05 Score=45.54 Aligned_cols=33 Identities=33% Similarity=0.701 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (673)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555666666666666666666655555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00064 Score=53.34 Aligned_cols=91 Identities=22% Similarity=0.111 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHHHHH
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDAL 596 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l 596 (673)
.+..++-..|+.++|+.+|++....|.... ...+...+...|++++|+.++++.+...|.. +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 355566677777777777777777665544 2235666667777777777777776654331 122223455667
Q ss_pred HhcCChHHHHHHHHHHHH
Q 005856 597 LAAGKTLNAYSILFKIME 614 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~ 614 (673)
...|+.++|++.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777766654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.03 Score=52.25 Aligned_cols=289 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHH----HHHHHHhccCC
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLP--GLCDAGKMVEVQKVLREMVERYIPPKDNSVFM----KLLGVQCKSGH 317 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 317 (673)
.|+-..|.+.-.+..+. +..|......++. +-.-.|+++.|.+-|+.|.. ++.+.. .|.-...+.|+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhccc
Confidence 34555555544433211 2233333333333 22345777777777777765 222222 12222235677
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchh--hHHHHHHHHH---c
Q 005856 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS--SYNPMIQHLC---H 392 (673)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~---~ 392 (673)
.+.|..+-+.....- +.-.......+...+..|+|+.|+++++...+...+ .++.. .-..++.+-+ -
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHh
Confidence 777777666665542 334455667777777788888888777766543221 12211 1111222111 1
Q ss_pred cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
..+...|...-....+..+.-...-..-..++.+.|+..++-.+++.+-+.. |.+..+..++ +.+.|+. ++.-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdt--a~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGDT--ALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCc--HHHHH
Confidence 2244555555555554443333344445667778888888888888887754 3333333222 2344443 33333
Q ss_pred HHHHHc-CCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhCC
Q 005856 473 DSMIED-GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL-MRGHVEEALGRIDLMMQSG 549 (673)
Q Consensus 473 ~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 549 (673)
++..+. ..+|| ......+..+....|++..|..--+..... .|....|-.+...-. ..|+-.++...+-+.+..+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 333211 12343 344555566666777777776655555443 445555555555443 3477777777777777777
Q ss_pred CCCCHH
Q 005856 550 SVPNFD 555 (673)
Q Consensus 550 ~~p~~~ 555 (673)
-.|.|.
T Consensus 394 rdPaW~ 399 (531)
T COG3898 394 RDPAWT 399 (531)
T ss_pred CCCccc
Confidence 777643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.79 E-value=5e-05 Score=44.96 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT 160 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 160 (673)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.7e-05 Score=44.70 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (673)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=5e-05 Score=44.57 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEP 159 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 159 (673)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.4e-05 Score=55.60 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
.|+++.|+.+|+.+.+..+..++...+..++.++.+.|++++|..+++. .+.+.. +......+..++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5778888888888887762112445566678888888888888888877 333222 34555556777888888888888
Q ss_pred HHHH
Q 005856 113 IFDI 116 (673)
Q Consensus 113 ~~~~ 116 (673)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0013 Score=52.65 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+...+...|++++|...++.+....+.. ....+..+..++...|++++|...++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444444432211 122333344444444444444444444444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0014 Score=59.17 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHH---ccCChHHHHHHHH
Q 005856 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLS---EKGKTIAAVKLLD 575 (673)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~---~~g~~~~A~~~~~ 575 (673)
+....-++.-+..++. |...|..|...|...|+.+.|...|.+... .|..|+. ..+..++. ......++..+|+
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3334444555555665 888999999999999999999999998888 2333332 22344333 2346789999999
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 620 (673)
+++..++. +......|+..+...|++.+|...++.|++...+.+
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99998765 455556789999999999999999999999765544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.045 Score=52.29 Aligned_cols=139 Identities=11% Similarity=0.139 Sum_probs=85.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHH------HHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH--
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRET------HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-- 100 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-- 100 (673)
+|..++++++|.++|.++.+.. ..++.. -..++++|... +.+.....+....+... ...|..+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~---~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG---KSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC---CchHHHHHHHHH
Confidence 7889999999999999997654 333332 33566666543 45555544444433311 2223333332
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCccC------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH
Q 005856 101 YGKKGIVQESVKIFDIMKQL--GVERS------------VKSYDALFKLILRRGRYMMAKRYFNKMLSE----GIEPTRH 162 (673)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~--g~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 162 (673)
+-+.+.++.|.+.+...... +..+. -..-+..+..+...|++.++..+++++... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34778999999888777654 21111 111244566778899999999998888654 2336788
Q ss_pred HHHHHHHHHHh
Q 005856 163 TYNVMLWGFFL 173 (673)
Q Consensus 163 ~~~~l~~~~~~ 173 (673)
+|+.++-.+++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88876555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00083 Score=65.22 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005856 160 TRHTYNVMLWGFFLSLKLETAIRFFEDMKSR--GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (673)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (673)
+......++..+....+++.+..++-..... ....-..+..++++.|...|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3333444444444444444444444444332 11111222234555555555555555555554455555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 005856 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (673)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (673)
|..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555554444434444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.066 Score=53.93 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHcCC
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI----------ESYGKKGIVQESVKIFDIMKQLGV 122 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----------~~~~~~~~~~~a~~~~~~~~~~g~ 122 (673)
.|.+..|..+.......-.++-|...|-+.... +.......+- ..-+--|.+++|.++|-.+.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578888988888777666777777776555432 1111111111 11122367777777777776532
Q ss_pred ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005856 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (673)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (673)
..+..+.+.|+|-...++++.--.. +.+.-...|+.+...++....+++|.+++..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2455666677776666655432110 00111345666666777777777777776553221 13
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
.+.++.+..++++-+.+.+.+. .+....-.+..++.+.|.-++|.+.|-+.. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 4555555555555555444443 255566667777777777777776663322 12 223445666667
Q ss_pred HHHHHHHHHH
Q 005856 282 MVEVQKVLRE 291 (673)
Q Consensus 282 ~~~a~~~~~~ 291 (673)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777766544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=64.35 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=38.4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (673)
+...|++++|+..|+++++.++. +...|..++.+|...|++++|+..+++++. +.|+ +..++.++...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHH
Confidence 33444555555555555444333 344444444444445555555555444444 2333 2223334444444444
Q ss_pred HHHHHHHHhcCC
Q 005856 570 AVKLLDFCLGRD 581 (673)
Q Consensus 570 A~~~~~~~~~~~ 581 (673)
|+..|++++..+
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 444444444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0089 Score=56.28 Aligned_cols=91 Identities=13% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHcC-CCHHHHHHHHHHHHHC----CCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-----h-hhHHHH
Q 005856 275 GLCDA-GKMVEVQKVLREMVER----YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE-----A-GHYGIL 343 (673)
Q Consensus 275 ~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-~~~~~l 343 (673)
.|... |+++.|.+.|++..+. +....-...+..++..+.+.|++++|..+|+++.......+ . ..+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5555555555554432 10000122344455556666666666666666654322111 1 111222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005856 344 IENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
+-++...|++..|...+++...
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3345556677777777776643
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0032 Score=54.29 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
.+..+...+...|++++|...+++..+....+. ...+..+...+...|++++|...++++++..+. +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344445555555555555555555554321111 234445555556666666666666666555332 34444455555
Q ss_pred HHcCCCHHHHH
Q 005856 529 LLMRGHVEEAL 539 (673)
Q Consensus 529 ~~~~g~~~~A~ 539 (673)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00091 Score=64.95 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=47.0
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG---VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
.+..+++.+....+.+.+..++.+..... ..-+.|..++++.|...|..+++..+++.=...|+=||..+++.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33444444444444444444444444332 112233344444444444444444444444444444455555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhh
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSL 486 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 486 (673)
+.+.|++..|.++...|...+...+..|
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 5555555444444444443333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=64.76 Aligned_cols=91 Identities=8% Similarity=-0.073 Sum_probs=64.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
..+...|+++.|++.|+.+++.+ |.+...|..+..++...|++++|+..++.+++.... +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 45566777777777777777766 566777777777777777777777777777665432 566666677777777777
Q ss_pred HHHHHHHHHHHHcC
Q 005856 108 QESVKIFDIMKQLG 121 (673)
Q Consensus 108 ~~a~~~~~~~~~~g 121 (673)
++|...|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.015 Score=57.61 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=43.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HH---------
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FD--------- 555 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~--------- 555 (673)
+...+...+.+...+.-|.++|.+|-.. ..++......++|++|..+.++.-+ ..|+ +.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 3444444444555556666666665221 2355556666677777766665444 3333 11
Q ss_pred ----HHHHHHHccCChHHHHHHHHHHhc
Q 005856 556 ----SLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 556 ----~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
..-.++.++|+..||..++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122234456777777777765544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00095 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 005856 97 LIESYGKKGIVQESVKIFDIMK 118 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~ 118 (673)
+...+...+++++|...|+...
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0025 Score=54.91 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD--EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
....+..++..+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566677777777888888888877765433222 3566677777777788888888777777643 2345555566
Q ss_pred HHHHHHcCCHHHH
Q 005856 133 FKLILRRGRYMMA 145 (673)
Q Consensus 133 ~~~~~~~g~~~~A 145 (673)
...+...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 6666666654433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=49.50 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-ccCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGV-ERSVKSYDALFKLILRRG--------RYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (673)
.|..+...+++...-.+|+.+++.|+ -|++.+|+.++.+..+.. +.-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 566666666666555431 123445556666666666666666666
Q ss_pred HHHHH
Q 005856 168 LWGFF 172 (673)
Q Consensus 168 ~~~~~ 172 (673)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=49.65 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=42.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 204 NGYNRFKKMDEAEKLFAEMKEKNI-EPTVISYTTMIKGYVAVE--------RADDALRIFDEMKSFDVKPNAVTYTALLP 274 (673)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 274 (673)
..+...+++.....+|+.++..|+ -|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333344555555555555555555 555555555555544332 23345566677776677777777777766
Q ss_pred HHHc
Q 005856 275 GLCD 278 (673)
Q Consensus 275 ~~~~ 278 (673)
.+.+
T Consensus 113 ~Llk 116 (120)
T PF08579_consen 113 SLLK 116 (120)
T ss_pred HHHH
Confidence 5543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0041 Score=58.52 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=10.2
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 005856 456 IESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~ 475 (673)
...|...|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 33455555666555555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0048 Score=62.82 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=38.4
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
...|++++|...++++++.++ +...|..++..+...|+.++|.+.++++..-
T Consensus 431 ~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 346778888888888877764 4566777777778888888888888777754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.022 Score=47.21 Aligned_cols=127 Identities=10% Similarity=0.141 Sum_probs=98.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CCCHHH
Q 005856 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV---KENLDL 521 (673)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 521 (673)
..|+......|..++.+.|++.+|...|++...--+.-|......+..+....+++..|...++++.+.++ .|+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~- 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH- 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch-
Confidence 45777777788889999999999999999988755667788888888888999999999999999888732 33333
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHccCChHHHHHHHH
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLD 575 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~ 575 (673)
-.+.+.|...|++.+|...|+...+ ..|+.. .+...+.++|+..+|..-+-
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3467888889999999999998888 555533 35566778888877765544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.035 Score=50.63 Aligned_cols=183 Identities=10% Similarity=0.066 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY---DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV 166 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 166 (673)
+...+-.....+...|++++|...|+.+.... |-+.... -.+..++.+.++++.|...+++..+..+.-...-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444444555567788888888888887753 2222222 3455667788888888888888876533222223333
Q ss_pred HHHHHHh--cC---------------CH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 005856 167 MLWGFFL--SL---------------KL---ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN 226 (673)
Q Consensus 167 l~~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 226 (673)
.+.+.+. .+ +. ..|...|+.+++ -|-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH-
Confidence 3333321 10 11 122233333332 222222234444433333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 227 IEPTVISYTTMIKGYVAVERADDALRIFDEMKSF--DVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (673)
Q Consensus 227 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 292 (673)
-...--.+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|......+
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0111123445566666666666666666543 11223344555556666666666666555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.11 Score=52.35 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=19.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
.|....|..+.......-.++-|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4566777777666666566666666555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00043 Score=48.67 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=46.9
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC
Q 005856 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG 86 (673)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 86 (673)
|...|++++|+++|+.+.... |.+..++..++.+|.+.|++++|..+++.+....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356788999999999998887 7788888899999999999999999999998864
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00043 Score=64.23 Aligned_cols=265 Identities=16% Similarity=0.119 Sum_probs=150.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHH----cC--CCCHHhHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK----KG--VLDPVAFN 418 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~ 418 (673)
.-+|+.|+....+.+|+.+++.+. ..+..-..+|+.+.++|.-.+++++|+++...=+. .+ .....+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 346777777777777777766541 12222334566667777777788888776542111 11 12223344
Q ss_pred HHHHHHHhcCChhHHHHHHHH----HHhCCCC-CCHHhHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 005856 419 NLIRGHSKEGNPDSAFEIVKI----MGRRGVP-RDADAYICLIESYLRKGE--------------------PADAKTALD 473 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 473 (673)
.|...+--.|.+++|...-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 455555556777776543322 2222111 122344445555554442 122333333
Q ss_pred HHHH----cCCC-CchhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 474 SMIE----DGHS-PASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVK-ENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 474 ~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
+-++ .|-. .--..|..+...|.-.|+++.|+..-+.=+.. |-+ .....+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 2211 1100 01123444445556678999998776543322 221 134567788999999999999999998
Q ss_pred HHHh----CCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcC----C-CCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 544 LMMQ----SGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR----D-CIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 544 ~~~~----~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
.... .|.+.. ..++...|.-..+++.|+.++.+-+.. + ..-....+.+|+.++-..|..+.|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6554 222221 334666666677889999988765532 1 11134566689999999999999999887
Q ss_pred HHHH
Q 005856 611 KIME 614 (673)
Q Consensus 611 ~~~~ 614 (673)
+-+.
T Consensus 340 ~hl~ 343 (639)
T KOG1130|consen 340 LHLR 343 (639)
T ss_pred HHHH
Confidence 7654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0014 Score=49.94 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP 465 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 465 (673)
+...+...|++++|...++...+..+.+...+..+..++...+++++|...++...... +.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555555554444444444445555555555555555555444432 11223444444444444555
Q ss_pred HHHHHHHHHHH
Q 005856 466 ADAKTALDSMI 476 (673)
Q Consensus 466 ~~A~~~~~~~~ 476 (673)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.088 Score=50.39 Aligned_cols=275 Identities=16% Similarity=0.183 Sum_probs=133.8
Q ss_pred HHHhcCChHHHHHHHhhcccCCCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH--H
Q 005856 65 ILGRVGKLNHARCILLDMPKKGVQWDEDMF------EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL--I 136 (673)
Q Consensus 65 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~ 136 (673)
.+.+.+++.+|..+|.++.+..- .++..+ +.++++|. .++.+.....+....+.- | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 34577888888888888766432 232222 34556664 345666666666555531 2 2334333333 2
Q ss_pred HHcCCHHHHHHHHHHHHhC--CCCC---C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcCHHH
Q 005856 137 LRRGRYMMAKRYFNKMLSE--GIEP---T---------RHTYNVMLWGFFLSLKLETAIRFFEDMKSR----GISLDVVT 198 (673)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~--~~~~---~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 198 (673)
.+.+++.+|.+.+....+. +..| | -..=+..+.++...|++.+++.+++++..+ ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3667788888777766543 2221 1 111133445566777777777777666543 22356666
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005856 199 YNTMINGYNRFKKMDEAEKLFAEMKEK---NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPG 275 (673)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 275 (673)
|+.++-.+++ ..|-++.+. .+-|+ |.-++-.|.+.= ..++.-.-..+.|.......++..
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHH
Confidence 6665555443 223233221 11111 222333332110 111110001223444444444443
Q ss_pred HHcC--CCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHh
Q 005856 276 LCDA--GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI----PTEAGHYGILIENFCK 349 (673)
Q Consensus 276 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 349 (673)
..-. ....--+++++.-....+.|+..-+...+...+.+ +.+++..+.+.+....+ ..-..++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 12222334444444445566455555555555554 44555555544433211 1113456667777777
Q ss_pred cCCHHHHHHHHHHH
Q 005856 350 AEMYDRAIKLLDKL 363 (673)
Q Consensus 350 ~~~~~~a~~~~~~~ 363 (673)
.++...|-+.+.-+
T Consensus 311 ~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 311 QVQTEEAKQYLALL 324 (549)
T ss_pred HHhHHHHHHHHHHH
Confidence 78887777777665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00046 Score=47.96 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=44.0
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+..+...|++++|+..|+++++..|. +...+..++.++...|++++|+..++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455667788888888888888887644 55666678888888888888888888887643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0025 Score=59.62 Aligned_cols=82 Identities=10% Similarity=0.113 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 005856 176 KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV---ISYTTMIKGYVAVERADDALR 252 (673)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~ 252 (673)
+.+.|..+|+...+. +..+...|...++.+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333344444444433 2223344444444444444444444444444332 11111 244444444444444444444
Q ss_pred HHHHHHh
Q 005856 253 IFDEMKS 259 (673)
Q Consensus 253 ~~~~~~~ 259 (673)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=60.83 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=64.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
+|..++...-+.+..+.|..+|.++.+....+..+|......-.. .++.+.|..+|+...+. ++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 344555555555556666666666654433344444444444222 34444466666655543 3345555555666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCch---hhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 461 RKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
..++.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666665542 22221 24555555445555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00045 Score=48.04 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..+...|++++|...|+.+++..+. +...+..+..++...|++++|+..++++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666665433 555555666666666666666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0061 Score=55.12 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG---RYMMAKRYFNKMLSEGIEPTRHTYNV 166 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 166 (673)
|...|..|...|...|+++.|..-|.+..+.. ++++..+..+..++.... ...++..+|++++..+ +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44445555555555555555555555444432 233444444444333321 2334444555544432 223344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 167 MLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444555555555555555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.07 Score=47.38 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=102.9
Q ss_pred HHhcCChHHHHHHHHHHHHcC-C-CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH---cC
Q 005856 459 YLRKGEPADAKTALDSMIEDG-H-SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALL---MR 532 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~---~~ 532 (673)
-.+.|++++|.+.|+.+.... . +-...+...++-++.+.++++.|+..+++.+.. +-.||.. |-..+.++. ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 455677777777777776431 1 112344555566667777777777777777766 3333333 222222222 11
Q ss_pred ----CCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 533 ----GHV---EEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 533 ----g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
.+. .+|..-++++++ .-|+.. -..+|...+..+.+.- ...=..+++-|.+.|.+..|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~--ryPnS~----------Ya~dA~~~i~~~~d~L----A~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQ--RYPNSR----------YAPDAKARIVKLNDAL----AGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHH--HCCCCc----------chhhHHHHHHHHHHHH----HHHHHHHHHHHHHhcChHHH
Confidence 122 333334444444 333321 1222222222221110 01113577889999999999
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhccc
Q 005856 606 YSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (673)
Q Consensus 606 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (673)
+.-++++++.-. .-...++..+..+|...|-.++|......|..+-++.
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 999999998632 2234556668899999999999999999998777554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0055 Score=52.57 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
.|..+...+...|++++|...+++.......+ ...++..+...+...|++++|...++++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555554332111 1124444555555555666666555555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=54.82 Aligned_cols=62 Identities=6% Similarity=-0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQW--DEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (673)
.+..++..+...|++++|...|+........+ ...++..+...|...|++++|...++...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555555443322111 122444444444555555555555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00063 Score=47.99 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQ 547 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 547 (673)
..|..+...+...|++++|+..|++.++.++. +...|..+..++...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444555555555555555555555555433 4445555555555555 45555555555544
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0034 Score=57.54 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=49.4
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHHHHHHhcC
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALLAAG 600 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~g 600 (673)
...|++++|+..|+.+++ ..|+ ...++..+...|++++|...|++.++..|.. .+..+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 455677777777776666 2222 2235555566666666666666666554332 1344445566666666
Q ss_pred ChHHHHHHHHHHHHc
Q 005856 601 KTLNAYSILFKIMEK 615 (673)
Q Consensus 601 ~~~~A~~~~~~~~~~ 615 (673)
++++|.++|+++++.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.13 Score=49.12 Aligned_cols=457 Identities=10% Similarity=0.091 Sum_probs=247.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 40 LQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (673)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (673)
+++-+++. .+ |.+...|..+++-+...|..++.++++++|..- ++.-+.+|..-+++-...+++..+..+|.+...
T Consensus 29 lrLRerIk-dN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIK-DN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhh-cC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 34555553 34 788899999999999999999999999999763 444567888888887888999999999999887
Q ss_pred cCCccCHhhHHHHHHHHHHcCC-----H-HHHHHHHHHHHh-CCCCCC-HHHHHHHHHH---HHhcCC------HHHHHH
Q 005856 120 LGVERSVKSYDALFKLILRRGR-----Y-MMAKRYFNKMLS-EGIEPT-RHTYNVMLWG---FFLSLK------LETAIR 182 (673)
Q Consensus 120 ~g~~~~~~~~~~l~~~~~~~g~-----~-~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~---~~~~~~------~~~a~~ 182 (673)
.. .+...|..-+....+... - ....+.|+-... .++.|- ...|+..+.. .-..|. ++....
T Consensus 105 k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 54 556677776665444321 1 111223333322 233332 2233333322 112233 334444
Q ss_pred HHHHHHhCCCCcCHHHHHHH------HHHH-Hc--CC----ChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHh
Q 005856 183 FFEDMKSRGISLDVVTYNTM------INGY-NR--FK----KMDEAEKLFAEMKE--KNIEP----TVISYTTMIKGYVA 243 (673)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l------l~~~-~~--~~----~~~~a~~~~~~~~~--~~~~~----~~~~~~~ll~~~~~ 243 (673)
.+.++....+.-=...|+.. +.-. ++ .| -+..|...++++.. .|... +..+++-.-+
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r---- 258 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR---- 258 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----
Confidence 45555443211001111110 0000 00 01 11223333333221 11100 0111111000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC------CCHH-HHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDA------GKMV-EVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (673)
....-|...|..-... +-.. ..--++++.+.. .+-.+.+|......+...+
T Consensus 259 --------------------~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~is 316 (660)
T COG5107 259 --------------------TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGIS 316 (660)
T ss_pred --------------------cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhcc
Confidence 0000111122111111 1111 111223333221 1224556666666666777
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHc---c
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH---N 393 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 393 (673)
|-+.|+....... +..+...-.+...|.-..+.+.....|+.+.+.-. .-| .++.+-+. .
T Consensus 317 d~q~al~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~------------r~y-s~~~s~~~s~~D 379 (660)
T COG5107 317 DKQKALKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK------------RKY-SMGESESASKVD 379 (660)
T ss_pred HHHHHHHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHH------------HHH-hhhhhhhhcccc
Confidence 7777777665443 33333333344555555666666666665532100 000 01111111 1
Q ss_pred CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
|+++.-.+++-+-. ..-..+|...+.+-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |++.-|..+|
T Consensus 380 ~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~if 455 (660)
T COG5107 380 NNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIF 455 (660)
T ss_pred CCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHH
Confidence 22322222211111 1234567788888888888999999999999987 67788889999987764 7888899999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 005856 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (673)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (673)
+--... ++.+..-....+.-+..-++-..|..+|+..+.+ +..+ ...|..++..-..-|+...+..+-+++.+ .
T Consensus 456 elGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~ 531 (660)
T COG5107 456 ELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--L 531 (660)
T ss_pred HHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--H
Confidence 987653 2233333455566677889999999999977665 1112 56788888888888999999988888887 5
Q ss_pred CCC
Q 005856 551 VPN 553 (673)
Q Consensus 551 ~p~ 553 (673)
.|.
T Consensus 532 ~pQ 534 (660)
T COG5107 532 VPQ 534 (660)
T ss_pred cCc
Confidence 555
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0048 Score=52.84 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005856 158 EPTRHTYNVMLWGFFL-----SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (673)
..+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 4466677777776653 35666666777777777777777777777776654 2221 1111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
- .-.+.+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 123457789999999999999999999999999876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00026 Score=40.34 Aligned_cols=27 Identities=37% Similarity=0.806 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 234 YTTMIKGYVAVERADDALRIFDEMKSF 260 (673)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (673)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.056 Score=47.96 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=86.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHH
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHS--PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN-L-DLVAKILEALL 530 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~ 530 (673)
....+...|++.+|...|+.+...... -.......++.++.+.|+++.|...+++.++.-+.-. . ..+..++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455566666666666666643211 1122334455566666666666666666666532211 1 11111222211
Q ss_pred -----------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 005856 531 -----------MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (673)
Q Consensus 531 -----------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 599 (673)
..+...+|+..++.+++ .-|+ .....+|...+..+.+. -...-..++.-|.+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~--~yP~----------S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK--RYPN----------SEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH--H-TT----------STTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH--HCcC----------chHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 11223455666665555 2233 33444444443322221 011223578889999
Q ss_pred CChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCcchHHH
Q 005856 600 GKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
|.+..|+.-++.+++.=.. .....+..++.+|.+.|..+.|..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999986322 123455568888999999886543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00071 Score=47.56 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=32.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..|++++|..+|+++.+..+. +...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666544 555555666666666666666666666665
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0039 Score=57.16 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=60.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC----HHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN----FDSLL 558 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~----~~~~~ 558 (673)
.|...+..+.+.|++++|...|+.+++..+... ...+..++.+|...|++++|+..|+.+.+. +..|. +..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777777644322 345556777777777777777777777652 22222 22345
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
.++...|++++|...+++.++..|.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5566677777777777777776543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0078 Score=51.60 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCccCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005856 110 SVKIFDIMKQLGVERSVKSYDALFKLILRR-----GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFF 184 (673)
Q Consensus 110 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 184 (673)
-...|+.... -..+-.+|..+++.|.+. |..+=....+..|.+.|+..|..+|+.|+..+=+ |.+-
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------ 103 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------ 103 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------
Confidence 3556666533 258889999999999854 7778788888999999999999999999988753 3321
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005856 185 EDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (673)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 246 (673)
|......... -| -.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 104 ---------p~n~fQ~~F~-hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ---------PRNFFQAEFM-HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------cccHHHHHhc-cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 11 13456688999999999999999999999999866553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.015 Score=59.26 Aligned_cols=61 Identities=7% Similarity=0.093 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..+..+.......|++++|...++++++.+ |+...|..+...+...|++++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444445677777777777776665 3556666666777777777777777766665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.017 Score=45.48 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=46.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----hhhHHHHHHH
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRD--ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMES 493 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 493 (673)
+..++-..|+.++|..+|+.....|.... ...+..+...+...|++++|..++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34455555666666666666666554432 2344455556666666666666666655431 22 1111222234
Q ss_pred HhccCCHHHHHHHHHHHH
Q 005856 494 LFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~ 511 (673)
+...|+.++|+..+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 455566666665555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00074 Score=47.63 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=33.8
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG-KTLNAYSILFKIME 614 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~A~~~~~~~~~ 614 (673)
++..+...|++++|+..|+++++.++. +...|..++.++.+.| ++.+|++.++++++
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 444555566666666666666665433 3445556666666666 56666666666654
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00037 Score=39.72 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005856 129 YDALFKLILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (673)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.015 Score=47.75 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQS-GSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 599 (673)
....+.-+...|++++|..+|+-+.-. ...|++ ..++..+...+.+++|+..+..+...++ .++..+.+.+.++...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l 118 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence 344566677899999999999876652 233443 3455556678899999999988887764 3555555799999999
Q ss_pred CChHHHHHHHHHHHHcC
Q 005856 600 GKTLNAYSILFKIMEKG 616 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~ 616 (673)
|+...|...|+.+.+++
T Consensus 119 ~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 119 RKAAKARQCFELVNERT 135 (165)
T ss_pred CCHHHHHHHHHHHHhCc
Confidence 99999999999888754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.065 Score=47.52 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 96 VLIESYGKKGIVQESVKIFDIMKQLGV--ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
.....+...|++.+|...|+.+..... +......-.++.++.+.|+++.|...++++++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444566666666666666655421 111223444555666666666666666666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0097 Score=48.84 Aligned_cols=102 Identities=9% Similarity=-0.062 Sum_probs=76.1
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (673)
...-+...|++++|..+|+-....++. ++..+..|+.++...|++++|+..|..+..-. ..+++..-+.+.||...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344445799999999999987776654 34556788999999999999999999877643 3455666789999999999
Q ss_pred cchHHHHHHHHHhhhcccchhhhh
Q 005856 637 TKQADILSRMIRGEMSRGSQKEKK 660 (673)
Q Consensus 637 ~~~a~~~~~~~~~~~~~~~~~~~~ 660 (673)
.+.|..-.+...........++|.
T Consensus 121 ~~~A~~~f~~a~~~~~~~~l~~~A 144 (165)
T PRK15331 121 AAKARQCFELVNERTEDESLRAKA 144 (165)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHH
Confidence 999977655555444333444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.31 Score=48.81 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=106.9
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
++..+|...+..-...|+.+...-+|++..-....-...|-..+......|+.+-|..++....+.-++-.+.+.-.-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34567888888888899999999998888765544556666666666677888888888877766544433333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhh-HHHHHHHHhccCCHHHHH---HHHHHHHHcCCCCC--HHHHHHHHH-HHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSL-FRSVMESLFEDGRVQTAS---RVMKSMVEKGVKEN--LDLVAKILE-ALL 530 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~~~--~~~~~~l~~-~~~ 530 (673)
..-..|+++.|..+++...+.- |+... ...-+....+.|+.+.+. .++.........+. ...+....+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 3445689999999999988743 54332 222233455677777777 33333332211111 111111222 233
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
-.++.+.|..++.++.+ ..|+..
T Consensus 453 i~~d~~~a~~~l~~~~~--~~~~~k 475 (577)
T KOG1258|consen 453 IREDADLARIILLEAND--ILPDCK 475 (577)
T ss_pred HhcCHHHHHHHHHHhhh--cCCccH
Confidence 45678888888888877 666643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.52 Score=49.07 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=103.0
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 005856 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHD--RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (673)
Q Consensus 22 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 99 (673)
+....+.+|.+..-++-|+.+.+.- + ..++ .......+.-+.+.|++++|...|-+-+.. +.| ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4455566777777777777666543 1 1111 123444555666778888888777665543 121 24455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179 (673)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 179 (673)
-|.......+...+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66666666677777777777774 444555677788888888777766655543 2211 1112344555556666666
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
|..+-..... +......++. ..+++++|.+.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 6555444332 3333333333 3577777777776653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0027 Score=45.31 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=45.4
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.++.+.+++++|.+++++++..+|. ++..+...+.++.+.|++.+|.+.++++++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567788888888888888887655 556666788888888888888888888887653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=52.69 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=52.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcC
Q 005856 528 ALLMRGHVEEALGRIDLMMQS----GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAG 600 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g 600 (673)
.+...|++.+|...|...++. ...|+ ..-++..+...|++++|..+|..+.+..|+.+ +..+..++.++.+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 345566677777766666652 12222 23355566666777777666666666544332 455566666666677
Q ss_pred ChHHHHHHHHHHHHc
Q 005856 601 KTLNAYSILFKIMEK 615 (673)
Q Consensus 601 ~~~~A~~~~~~~~~~ 615 (673)
+.++|+..|+++.+.
T Consensus 230 ~~d~A~atl~qv~k~ 244 (262)
T COG1729 230 NTDEACATLQQVIKR 244 (262)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777776666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.19 Score=48.20 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=24.1
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (673)
-..+.+++.+..-.|+++.|.+.++++.... +|.|
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 3444567777777888888888888877553 5555
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.39 Score=45.64 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=69.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHcc
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP-NFDSLLSVLSEK 564 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~~~~~ 564 (673)
+.+..+.-|...|+...|.++.++. .+ |+...|...+.+|+..++|++-.++.+. .-.| .+..++..|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCCCChHHHHHHHHHC
Confidence 4444455566677777666665544 33 4667777777778888887776655432 2233 366777777777
Q ss_pred CChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
|...+|..++.+ ++ +..-+..|.+.|++.+|.+.-.+
T Consensus 251 ~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888777775 11 13456777788888888776444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.45 Score=45.28 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (673)
.+..+.-+...|+...|.++-.+. . -|+..-|..-+.+++..++|++-..+... +. ++..|..++.+|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHHH
Confidence 344455556666666666665554 2 26666666777777777777666654332 11 22445666677777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHH
Q 005856 532 RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKL 573 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~ 573 (673)
.|+..+|..++.+ -|+ ..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k------~~~-~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK------IPD-EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh------CCh-HHHHHHHHHCCCHHHHHHH
Confidence 7777777766654 222 5556666677777777655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.026 Score=50.51 Aligned_cols=82 Identities=18% Similarity=0.095 Sum_probs=37.7
Q ss_pred ccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCcc
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTK 638 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 638 (673)
..|++.+|...|...++..|... +..+..|+..++..|++++|..+|..+.+.-+ +..+..+..|+.+....|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34555555555555554443322 22333455555555555555555555544211 122334444555555555555
Q ss_pred hHHHHH
Q 005856 639 QADILS 644 (673)
Q Consensus 639 ~a~~~~ 644 (673)
+|...+
T Consensus 233 ~A~atl 238 (262)
T COG1729 233 EACATL 238 (262)
T ss_pred HHHHHH
Confidence 553333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0091 Score=42.55 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=26.4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|.+.+++++|.++++.++..++. +...|...+.++...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455555555555555554333 344444445555555555555555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.073 Score=51.76 Aligned_cols=78 Identities=13% Similarity=0.001 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHccCChHHHHHHHHH
Q 005856 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLLDF 576 (673)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~~~ 576 (673)
.+|.+..++..+.+.. |......+..++...|+++.|...|++... +.|+... .+..+.-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444433 344444444444444445555555555544 4444222 22222335555555555555
Q ss_pred HhcCC
Q 005856 577 CLGRD 581 (673)
Q Consensus 577 ~~~~~ 581 (673)
+++.+
T Consensus 398 alrLs 402 (458)
T PRK11906 398 SLQLE 402 (458)
T ss_pred HhccC
Confidence 55543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.51 Score=44.33 Aligned_cols=96 Identities=18% Similarity=0.042 Sum_probs=50.2
Q ss_pred HhcC-CHHHHHHHHHHHHHchhccCCCCCCCCch-----hhHHHHHHHHHccCCHh---HHHHHHHHHHHcCCCCHHhHH
Q 005856 348 CKAE-MYDRAIKLLDKLVEKEIILRPQSTLDMEA-----SSYNPMIQHLCHNGQTG---KAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 348 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~ 418 (673)
...+ +++.|..++++..+.-..........++. .++..++.+|...+..+ +|..+++.+....+..+.++.
T Consensus 46 ~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~ 125 (278)
T PF08631_consen 46 LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFL 125 (278)
T ss_pred HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 3445 78888887777755411000111112222 24455556665555433 344455555444444455555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
.-+..+.+.++.+++.+.+..|...
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHh
Confidence 5566666666666777777666654
|
It is also involved in sporulation []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.24 Score=49.65 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
.+...+...+.+...+..|-++|.++-. ...+++.....++|.+|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444555555566677777777777643 34566777778888888877776655
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.15 Score=42.41 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=42.0
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHhH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADAY 452 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 452 (673)
...++..+...|+++.|....+.+....|.+...+..++.+|...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344555566677777777777777777777777777777777777777777777766542 3666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.52 Score=43.24 Aligned_cols=220 Identities=19% Similarity=0.115 Sum_probs=142.8
Q ss_pred CCHhHHHHHHHHHHHcCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRKGEPADAKT 470 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 470 (673)
+....+...+......... ...........+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555555554432 3566777777788888888888887777642 233455666677777777788888888
Q ss_pred HHHHHHHcCCCCchhhHHHHHH-HHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 471 ALDSMIEDGHSPASSLFRSVME-SLFEDGRVQTASRVMKSMVEKGV--KENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...+++++|+..+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888877643322 122222222 67788888888888888865332 12233334444446677888888888888777
Q ss_pred CCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 548 SGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 548 ~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
..|. ...+...+...++++.|...+..+....+. ....+..+...+...|.++++...+.+......
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 --LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred --hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3333 445666677778888888888888876543 234444566666677778888888888777653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.029 Score=54.33 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHccCChHHHHHHHHHHhc
Q 005856 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
...++.+..+|...|++++|+..+++.++ +.|+ +..+..+|...|++++|+..++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555555555444 3333 23344444445555555555554444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0073 Score=43.76 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=21.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
...+..++.++...|++++|++.++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566778888888888888888887664
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.29 Score=44.43 Aligned_cols=121 Identities=19% Similarity=0.159 Sum_probs=63.8
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
-+...+++.+|...|+.+.... +.+..+...++.+|...|+.+.|..++..++.............-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4445667777777777776665 45566666677777777777777777777665422211111112233333333333
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 153 (673)
+...+-.+.... +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333321 1244444455555555566666655544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.6 Score=44.89 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=51.2
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSK---EGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 454 (673)
+...++-+|....+++.-.++.+.+.... ...+.+-...+-++.+ .|+.++|..++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 44455566777888888888888877663 2233333445555666 7788888888877555555667777776
Q ss_pred HHHHHH
Q 005856 455 LIESYL 460 (673)
Q Consensus 455 l~~~~~ 460 (673)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 666543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.056 Score=41.87 Aligned_cols=94 Identities=20% Similarity=0.087 Sum_probs=56.4
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDK---LIAGLNQEG 635 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g 635 (673)
.++++.|+++.|++.|.+++..-|+ ....|+.-+.++--.|+.++|+.-++++++-.+...-..+.. -+..|+..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455677777777777777766443 455677777777777777777777777776544333222222 333467777
Q ss_pred CcchHHHHHHHHHhhhcc
Q 005856 636 NTKQADILSRMIRGEMSR 653 (673)
Q Consensus 636 ~~~~a~~~~~~~~~~~~~ 653 (673)
+-+.|..=.+..-..++.
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777774433344444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.39 Score=44.73 Aligned_cols=259 Identities=12% Similarity=0.054 Sum_probs=136.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHH----HHHcC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQ----LMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRD---ADA 451 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~ 451 (673)
++-.+..+.++.|.+++++..--. ..+.. ..-...|..+.+++.+..++.+++.+-+.-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 445556666666666665433221 11111 112234556666666666666666665544432 22221 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----chhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCHHHH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSP-----ASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKENLDLV 522 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 522 (673)
..++..++.-.+.++++++.|+...+-.... .-.++..+...|....|+++|.-+..++.+. +++.-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345566666677788888887766432111 2345667777788888888887776666543 333111112
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCH----HHHHHHHHccCChHHHHHHHHHHhcCC--CCC---
Q 005856 523 -----AKILEALLMRGHVEEALGRIDLMMQ----SGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRD--CII--- 584 (673)
Q Consensus 523 -----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~--- 584 (673)
..+.-++...|..-+|.+.-++..+ +|..|-+ -.+.++|...|+.+.|..-++.+.... ...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg 284 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG 284 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence 2344556667777666666655443 5666653 347778888888888888888776531 111
Q ss_pred ChHhHHHHHHHHHhcCCh-----HHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCcchH
Q 005856 585 DLASYEKVLDALLAAGKT-----LNAYSILFKIMEKGG-----VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 585 ~~~~~~~l~~~l~~~g~~-----~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
.......++..+....-. =.|+++-+++++-.. .......-.+...|+..|.-++-
T Consensus 285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDEL 350 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHH
Confidence 122233333333322222 236666666655221 11223333355557677665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.56 Score=41.66 Aligned_cols=137 Identities=13% Similarity=0.036 Sum_probs=82.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhH
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSY 383 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (673)
+.+.++......|.+.-....++++++...+.++...+.+++.-.+.|+.+.|...|++..+... .-.+..-.....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---KLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---hhhccchhHHHH
Confidence 34444555555555555556666665555455555556666666666666666666665532211 001111111122
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
......|.-.+++..|...+.++...++.++...|.-.-+..-.|+..+|.+.++.|...
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222334555677888888888888887778877777766777778899999999988875
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.38 Score=39.68 Aligned_cols=134 Identities=15% Similarity=0.173 Sum_probs=88.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH------HHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN-LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD------SLL 558 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~ 558 (673)
.|...+. +...+..++|+.-|..+.+.|...- .-..........+.|+...|+..|+++-.-...|... ...
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3433333 4566777888888888887755421 1122334555678888899999988887755555422 134
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 620 (673)
..+...|.+++....++.....+...-...-..|+-+-++.|++.+|.+.|.++......|.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 45668999999988888444332211233336788888899999999999999988655444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.23 Score=48.42 Aligned_cols=78 Identities=12% Similarity=-0.015 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
..+|.++.++.++ ..|+ ...++.++...++++.|...|+++...+|+ ....|...++.+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555555 3333 122334444555566666666666666543 23334455666666666666666666
Q ss_pred HHHHc
Q 005856 611 KIMEK 615 (673)
Q Consensus 611 ~~~~~ 615 (673)
+++.-
T Consensus 397 ~alrL 401 (458)
T PRK11906 397 KSLQL 401 (458)
T ss_pred HHhcc
Confidence 65554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.2 Score=45.94 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=51.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH----HHHHHHHhccCCHHH
Q 005856 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF----RSVMESLFEDGRVQT 502 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~ 502 (673)
.|++.+|...++++.+. .+.|...+..--.+|...|+...-...+++.+.. ..++...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555543 3334555555555555555555555555554421 12222211 122223344555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 503 ASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 503 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
|.+.-++..+.+.. |.-.-.+....+-..|+..++.++.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHH
Confidence 55555555444322 2333334444444455555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.084 Score=50.00 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=63.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005856 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (673)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (673)
+..+.-.+.+.+++.+|+..-.+++..++. +......-+.+|...|+++.|+..|+++++..+.. -.+-+.|+.+-.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k 337 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQK 337 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence 344566666788888888888888888755 44444478888888889999999888888764322 2233345555555
Q ss_pred cCCcchH-HHHHHHHHhhh
Q 005856 634 EGNTKQA-DILSRMIRGEM 651 (673)
Q Consensus 634 ~g~~~~a-~~~~~~~~~~~ 651 (673)
.....+. ..++..|...-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5555555 44555555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.011 Score=42.90 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=28.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEK----GVK-EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
+++.+...|...|++++|+..|++.++. |.. |. ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 111 11 2334455555555555555555555443
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.11 Score=41.85 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC
Q 005856 526 LEALLMRGHVEEALGRIDLMMQSG-SVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID 585 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (673)
+....+.|++++|++.|+.+...- ..|- ...++.++.+.|++++|...+++.++.+|...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 333445555555555555555421 1111 12245555555555555555555555554444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.33 Score=42.53 Aligned_cols=203 Identities=14% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
|..-..+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. .--...+......|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666666777776666555431 111211111 112234444444444431 1112334444556666
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHH
Q 005856 497 DGRVQTASRVMKSMVEK--GVKENL--DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (673)
+|..+.|-..+++.-+. +.+|+. ..|..-+......++...|.+++.+ ....|.+..++.+|-.
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk------------~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK------------CSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH------------hhhHhhhhHHhhHHHH
Confidence 66666666666655433 222221 1122222222222222223322222 3334555566666655
Q ss_pred HHHHHhcCC--CCCC---hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCcchHHH
Q 005856 573 LLDFCLGRD--CIID---LASYEKVLDALLAAGKTLNAYSILFKIMEKGG---VTDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 573 ~~~~~~~~~--~~~~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
.+.+-.... +... ...|...+-.++-..+|..|...++..-+.+. +.+..+...|+.+|. .|+.+++..
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 544322211 1111 22344555566667788888888887555443 344556666666653 456665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.26 Score=50.02 Aligned_cols=24 Identities=13% Similarity=-0.109 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 005856 454 CLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 454 ~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
.++....-.||-+.+++.+.+..+
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhc
Confidence 344444455555555555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.17 Score=47.00 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=141.0
Q ss_pred ccCCHhHHHHHHHHHHHcC---CCCHHhHHHHHHHHHhcCChhHHHHHH----HHHHhCC-CCCCHHhHHHHHHHHHhcC
Q 005856 392 HNGQTGKAEIFFRQLMKKG---VLDPVAFNNLIRGHSKEGNPDSAFEIV----KIMGRRG-VPRDADAYICLIESYLRKG 463 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~~~ 463 (673)
...+.++|+..+.+....- .....++..+..+.+..|.+++++..- +.+.+.. -..-...|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776655543 233456777888888888888776532 2222210 0011235555666666666
Q ss_pred ChHHHHHHHHHHHHc-CCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcCCC
Q 005856 464 EPADAKTALDSMIED-GHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~ 534 (673)
++.+++.+-+.-... |..| ......++..++...+.++++++.|+.+.+. +.......+-.+...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655554432 2222 1123445666777788899999999988765 222334567788888999999
Q ss_pred HHHHHHHHHHHHh----CCCCCCH---------HHHHHHHHccCChHHHHHHHHHHhcCCCCC-C----hHhHHHHHHHH
Q 005856 535 VEEALGRIDLMMQ----SGSVPNF---------DSLLSVLSEKGKTIAAVKLLDFCLGRDCII-D----LASYEKVLDAL 596 (673)
Q Consensus 535 ~~~A~~~~~~~~~----~~~~p~~---------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~l 596 (673)
+++|+-+..+..+ .++ .++ ..+.-++...|++.+|.+.-+++.+..... + ....-.++++|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 9999887765554 222 122 225556667899888888877766543221 2 33345788999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 005856 597 LAAGKTLNAYSILFKIME 614 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~ 614 (673)
-..|+.+.|+.-|+++..
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 999999999999998765
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.37 Score=40.83 Aligned_cols=90 Identities=22% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 005856 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF-----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (673)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 599 (673)
+...+...|++++|..-++..+......++ ..+.......|.+++|+..++.....+. .+..-...+++|...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 345566677777777777666543333222 1245555667777777777763333221 233345567778888
Q ss_pred CChHHHHHHHHHHHHcC
Q 005856 600 GKTLNAYSILFKIMEKG 616 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~ 616 (673)
|+.++|+.-|++.++..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888877775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.057 Score=45.01 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 005856 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKM 152 (673)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (673)
.++..+...|+++.|..+.+.+.... |.+...|..+|.+|...|+...|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444555555555555555443 334445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.1 Score=44.95 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
....-+..+.+...++-|..+.+.-... ..--..++......+.+.|++++|...|-+-... +.| ..++.-|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 4556677777777888888776543221 0111233344444556778888888777665431 111 23455555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 217 (673)
...+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++|..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666666667777888777754 44455678888888888887776665544 2211 1123345556666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
+-..... +...... .+-..+++++|++.+..+.
T Consensus 485 LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 5544432 2222233 3345688899988887763
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.25 Score=41.74 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH--HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF--RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDL--VAKIL 526 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 526 (673)
.|..++.... .+.+ +.....+.+...+......++ ..+...+..+|++++|...++..+....+.+... --.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444432 3333 445555566543211222222 2334567889999999999998876532222222 23577
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 527 EALLMRGHVEEALGRIDLMMQSGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
+.....|.+|+|+..++.....+..+-. ..-++++...|+.++|..-|++++..+.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8888999999999999988776555543 34678899999999999999999998643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.8 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 625 DKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
.+|+.++...|..++|..+.+....
T Consensus 1188 ~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1188 KRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3588999999999999777665554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.4 Score=42.51 Aligned_cols=436 Identities=12% Similarity=0.125 Sum_probs=219.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 005856 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN 226 (673)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 226 (673)
++-+++.+. +.|..+|..|+.-+...+..++..++++++..- ++--..+|...+.+-...+++...+.+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 554555442 457788889999998889999999999888754 33345677777777777788889999998888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHh-CCCCCCHH-H---HHHHHHHHHcCCCH------HHHHHHH
Q 005856 227 IEPTVISYTTMIKGYVAVERA------DDALRIFDEMKS-FDVKPNAV-T---YTALLPGLCDAGKM------VEVQKVL 289 (673)
Q Consensus 227 ~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~~-~---~~~ll~~~~~~~~~------~~a~~~~ 289 (673)
. +...|...+..-.+.+.. ....+.|+-... .++.|-.. . |..++...-..|.+ +.....+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 456666666544443311 111223332222 33333322 2 33333333333333 3344455
Q ss_pred HHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhc
Q 005856 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEII 369 (673)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (673)
.+++.. | .|++++...-|+.... ..+..|-..++. -..--+-.|...++++.....-
T Consensus 185 ~ral~t---P---------------~~nleklW~dy~~fE~---e~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 185 MRALQT---P---------------MGNLEKLWKDYENFEL---ELNKITARKFVG--ETSPIYMSARQRYQEIQNLTRG 241 (660)
T ss_pred HHHHcC---c---------------cccHHHHHHHHHHHHH---HHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhcc
Confidence 555442 1 1122222221111111 000000000000 0000112233333332211000
Q ss_pred cCCCC---------CCCCchhhHHHHHHHHHccC-------CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHH
Q 005856 370 LRPQS---------TLDMEASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (673)
Q Consensus 370 ~~~~~---------~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 433 (673)
.+... .......-|...|.--...| ......-++++....-+..+.+|---...+...++-+.|
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 00000 00000111222222211111 112233344444444455556666666666667777777
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--------------CCC---------------Cch
Q 005856 434 FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED--------------GHS---------------PAS 484 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~---------------~~~ 484 (673)
....+..... .|+... .+...|.-..+-+.....|+..... +.. .-.
T Consensus 322 l~tv~rg~~~--spsL~~--~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t 397 (660)
T COG5107 322 LKTVERGIEM--SPSLTM--FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLT 397 (660)
T ss_pred HHHHHhcccC--CCchhe--eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhh
Confidence 7766554432 233111 1222222233333333322222110 110 011
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHhCCCCCCH-HHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDL-MMQSGSVPNF-DSLLSVL 561 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p~~-~~~~~~~ 561 (673)
..|...+....+..-.+.|..+|-+..+.+ ..+++..+++.+.. ...|++.-|..+|+- |...+..|-+ ...+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~-~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY-YATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH-HhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 234455555566677888899999988887 45566666777664 456778888888884 4444444443 3466667
Q ss_pred HccCChHHHHHHHHHHhcCCCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
..-++-+.|..+|+.++..--. --...|..+++-=..-|+...|..+=+++.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7788888899999877654211 11467778888777888888888777777664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.94 Score=40.31 Aligned_cols=131 Identities=10% Similarity=0.038 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH-----
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV----- 490 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----- 490 (673)
+.++++..+.-.|.+.-....+.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445555555556666666666666666555556666666666666667666666666655543322333322222
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
...+.-++++..|...+.++...+.. ++...+.-+-++.-.|+..+|++.++.|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22344556677777777777666544 444444444444555667777777777766
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.36 Score=49.03 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 399 AEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
..-+|.-+...-| ..+..++....-.||-+.+++.+....+.
T Consensus 176 G~G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 176 GFGLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 3445555555533 45677788888889999999998887663
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.57 Score=38.60 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 005856 19 PQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRV 69 (673)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (673)
+..++..+...+...+.+..+..+++++...+ +.++...+.++..|++.
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 44455556666666666666666666666554 34555556666666544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.02 E-value=2 Score=43.33 Aligned_cols=129 Identities=8% Similarity=0.079 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005856 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (673)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 241 (673)
.|..++.---...+.+.+..++..+... .|.. .-|......-.+.|..+.+.++|++.... ++.+...|......+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3333443332333334444455554433 2222 23344444444555566666666655542 344444444443332
Q ss_pred H-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 242 V-AVERADDALRIFDEMKSF-DVK-PNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 242 ~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
. ..|+.+...+.|+..... |.. .+...|...+..-...+++.....++++.++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 334455555555554431 111 1223344444444445555555555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.4 Score=43.94 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE 563 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 563 (673)
..+.+-.+.-+...|+..+|.++-++. --|+...|..-+.++...++|++-.++.+.... +-.+.-+..+|.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLK 756 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHh
Confidence 344455555667778878877766654 224666676667778888888776666543321 1225667778888
Q ss_pred cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHH
Q 005856 564 KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 609 (673)
.|+.+||.+++-+.-. +...+.+|.+.|++.+|.+.-
T Consensus 757 ~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 8888888887763321 114677788888888887653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.14 Score=40.74 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHchhc-------cCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEII-------LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
.++..++.++++.|+.+....+++..-..+.. ..+.....|+..++.+++.+|+..+++..|.++.+.+.+.-
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 44555666666666666666665544322110 12445556666666777777766677777776666666554
Q ss_pred --CCCHHhHHHHHHHHH
Q 005856 411 --VLDPVAFNNLIRGHS 425 (673)
Q Consensus 411 --~~~~~~~~~l~~~~~ 425 (673)
+.+..+|..|+.-..
T Consensus 83 ~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 334555666555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.12 Score=41.18 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=36.2
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 005856 479 GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILE 527 (673)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 527 (673)
...|+..++.+++.+|+..|++..|+++.+...+. +++.+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45677777788888888888888888888877766 66666777776664
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.82 Score=40.21 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHH
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
.+......|..+|..+.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444444555555555544444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.3 Score=40.40 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=29.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005856 171 FFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (673)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (673)
....|++.+|...|......... +...-..+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 34556666666666665554322 344444555566666666666666655543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.53 Score=38.88 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHh-hHH
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDED-MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-SYD 130 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~ 130 (673)
..+...|...++. .+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... ...
T Consensus 56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3455666666654 45566778888888877776542222 22233345567788888888888876643233322 111
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 131 AL--FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (673)
Q Consensus 131 ~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 191 (673)
.| .-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|.++....
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12 22345677888887777777555444444445566666667888888888888877643
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.66 Score=36.39 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=77.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
.-.|..++..+++.+.... .+..-++.++......-+-+-..++++.+-+- ++.+ -.....++.+|...|...+-
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchHHH
Confidence 3457777888888777653 45556666666555555555555555554332 2211 12234566666666654443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
+.+ .++.+...|+.+.-.+++....+ +-++++.....++.+|.+.|+..+|-+++.++-++|.
T Consensus 89 vD~---------------ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDL---------------ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHH---------------HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHH---------------HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 322 34556677777777777765554 3356777777888889999999999888888888763
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.44 Score=43.88 Aligned_cols=119 Identities=13% Similarity=-0.017 Sum_probs=54.9
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccC-CCCCCHHHHHHH--HHHHHhcC
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK-GVQWDEDMFEVL--IESYGKKG 105 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l--i~~~~~~~ 105 (673)
++...|+...|-..++++++.. |.+.-++...=.+|..+|+...-...++++... +......+|..- .-++..+|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 4444555555555555555443 455555555555555555555555555554432 211111222221 12233445
Q ss_pred CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 005856 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFN 150 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 150 (673)
-+++|.+.-++..+.+ +.|..+-.++...+--.|++.++.++..
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5555555555555433 2333344444444445555555555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.3 Score=39.61 Aligned_cols=173 Identities=17% Similarity=0.147 Sum_probs=96.3
Q ss_pred HHHccCCHhHHHHHHHHHHHcCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKGV---LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK--- 462 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 462 (673)
.-.+.|++++|...|+.+....| ....+...++.++-+.++++.|....++...........-|...+.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 34567889999999998887764 344556667777888888999988888887753222223344444444421
Q ss_pred ----CChH---HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 463 ----GEPA---DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 463 ----~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
.+.. .|..-|++++.. + ||.. =...|..-...+... =...=..+.+.|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r-y-PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR-Y-PNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH-C-CCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 2222 233333333332 1 2211 111222211111111 000112466777788888
Q ss_pred HHHHHHHHHHHhCC-C----CCCHHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 536 EEALGRIDLMMQSG-S----VPNFDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 536 ~~A~~~~~~~~~~~-~----~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
-.|..-+++|++.- . .+....+..+|...|-.++|...-+ .+..+
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N 233 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGAN 233 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhc
Confidence 88888888877731 1 1113446667777888888877655 55554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.11 Score=50.61 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=70.0
Q ss_pred CchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005856 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLS 559 (673)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 559 (673)
.+...++.+..+|...|++++|+..|++.++.++.... ..|..+..+|...|+.++|++.+++.++.. .|.+..+..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~f~~i~~ 151 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLKFSTILN 151 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chhHHHHHh
Confidence 34668889999999999999999999999998665322 358889999999999999999999999842 333321111
Q ss_pred --HHHccCChHHHHHHHHHHhcCC
Q 005856 560 --VLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 560 --~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.+....+..+..++++....-+
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhC
Confidence 0111233345556666555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.011 Score=34.24 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH
Q 005856 574 LDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (673)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 607 (673)
++++++.+|. +...|..++..|...|++++|++
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhcC
Confidence 5677777654 67778889999999999998863
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.37 Score=45.85 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCC---------CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD---------MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPV 415 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (673)
..|.+.|++..|...|++++..-. ...... .-..++..+..++.+.+++..|+......+...++|..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~---~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLE---YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhh---ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 356666777777766666543210 000000 01113344455555555666666666665555555555
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
....-..++...|+++.|+..|+.+.+.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5555555555566666666666555553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.17 Score=42.65 Aligned_cols=88 Identities=19% Similarity=0.111 Sum_probs=54.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 526 LEALLMRGHVEEALGRIDLMMQSGSVPNF---------DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
..-+...|++++|..-|...++ .-|.. ..-+-++.+.++++.|+.--.+++..+|. ........+.+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 4445677777777777777776 33331 11222334567777777777777777643 233333456677
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 005856 597 LAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~ 616 (673)
-+..++++|++=|+++++..
T Consensus 179 ek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhC
Confidence 77777777777777777664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.96 Score=35.53 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=38.1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 445 (673)
.....++.....|.-+.-.+++..+.+.+.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455566667777777777776665566777777777777777777777777777776664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.24 Score=41.84 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHc
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKEN----LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSE 563 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~ 563 (673)
.-+...|++++|..-|..+++.-+... ...|..-+.++.+.+.++.|+.-..+.++ +.|.+.. -..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 346777888888888888777633222 22344445566677778888777777776 6676432 2345666
Q ss_pred cCChHHHHHHHHHHhcCCCC
Q 005856 564 KGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~ 583 (673)
..++++|+.-|++.+..+|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 77788888888877776543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.28 Score=38.22 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=50.4
Q ss_pred HHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhh---HHHHHHHHHHcC
Q 005856 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKS---YDALFKLILRRG 140 (673)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g 140 (673)
-++...|+.+.|++.|.+.+..-+ .+.+.|+.-..++.-+|+.++|+.-+++..+..-+.+... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345566666666666666554422 2566666666666666666666666666655422222222 222233455556
Q ss_pred CHHHHHHHHHHHHhCC
Q 005856 141 RYMMAKRYFNKMLSEG 156 (673)
Q Consensus 141 ~~~~A~~~~~~~~~~~ 156 (673)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.68 Score=45.45 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=76.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCC---------H--
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG---SVPN---------F-- 554 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~---------~-- 554 (673)
.++.-.-+..+.+.-++.-+++++..+. -...|..+. --......+|.+++++.++.+ ...+ +
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pd-CAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPD-CADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhh-hhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3444455667777777777777776322 123333222 223456788888888776521 1110 0
Q ss_pred -------------HHHHHHHHccCChHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 555 -------------DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 555 -------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
..+...+.+.|+.+||++.++.+++..+..+ ..+...|+..|...+.+.++..++.+.-+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1134444578888999888888887654433 33456788888888999998888888643
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=4.9 Score=41.82 Aligned_cols=108 Identities=12% Similarity=0.089 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (673)
+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-.++-+.+ -++.-|.-+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHH
Confidence 44445555666777777777766665 257777777777788878777665554443 22456667777888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
+.|+.++|.+++.+.... . ....+|.+.|++.+|.++.
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 888888888887776322 1 3566777778887777654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.1 Score=37.55 Aligned_cols=54 Identities=19% Similarity=0.084 Sum_probs=29.4
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhH------HHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASY------EKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+..+++.+|+.+|++.......++.--| ...+-++...++.-.+...+++..+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 3567777777777766665444332212 12222233346666666666766654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.6 Score=42.98 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 131 ALFKLILRRGRYMMAKRYFNKMLSEGIE-PTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189 (673)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (673)
.+...+-+.|+.++|++.|++|.+.... -.......|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445566666666666666554211 1233455566666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.2 Score=36.04 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005856 99 ESYGKKGIVQESVKIFDIMKQLG--VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (673)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (673)
....+.|++++|.+.|+.+..+- -+-...+.-.++.+|.+.++++.|...+++.++..+.....-|...+.+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33446667777777776666542 012233455566667777777777777777666533322233444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.66 Score=46.44 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...|..|.+.....|+.+.|++.|++... +..|+-.|...|+.+.-.++.+.....| -++....+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~ 411 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQA 411 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHH
Confidence 334555555555555555555555555432 4444555555555555555544444432 12333333
Q ss_pred HHhcCChHHHHHHHH
Q 005856 459 YLRKGEPADAKTALD 473 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~ 473 (673)
+.-.|+.++..+++.
T Consensus 412 ~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 412 ALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHT-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 444455554444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.3 Score=43.72 Aligned_cols=105 Identities=15% Similarity=0.257 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005856 158 EPTRHTYNVMLWGFFL-----SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (673)
+.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..-.. ..+|+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~----------- 130 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK----------- 130 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH-----------
Confidence 3455556555555542 2455666666666666677667777776666554322111 011111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
..-.| -.+-+-++.++++|...|+.||..+-..++.++.+.+-
T Consensus 131 ----~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 ----VFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----HHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111 12335678899999999999999999999988877664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.6 Score=43.77 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=24.9
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
+...|..|.....+.|+++.|...|.+..+ +..|+-.|.-.|+.+...++.+.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 444555555555555555555555544432 344444444455544444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.11 Score=32.22 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=10.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+...|.+.|++++|.++++++++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=3 Score=36.15 Aligned_cols=85 Identities=21% Similarity=0.083 Sum_probs=55.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
.|-...|.-=|.+.....|.-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-+ ++.-.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 3445555566666666677778888888888888888888888888888764333322333222 233457777777766
Q ss_pred HHHHHc
Q 005856 473 DSMIED 478 (673)
Q Consensus 473 ~~~~~~ 478 (673)
...-..
T Consensus 157 ~~fYQ~ 162 (297)
T COG4785 157 LAFYQD 162 (297)
T ss_pred HHHHhc
Confidence 666543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.11 Score=32.22 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=23.2
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLI 421 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (673)
++..+...|...|++++|.++|+++.+..|.++..+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3445555666666666666666666666655555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=30.59 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
|..|+.+|.+.|++++|++++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999999999998553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.8 Score=37.83 Aligned_cols=220 Identities=14% Similarity=0.051 Sum_probs=122.9
Q ss_pred HccCCHhHHHHHHHHHHHcC-CCCHHhHHHH-------HHHHHhcC-ChhHHHHHHHHHHhC--------CCCCCH----
Q 005856 391 CHNGQTGKAEIFFRQLMKKG-VLDPVAFNNL-------IRGHSKEG-NPDSAFEIVKIMGRR--------GVPRDA---- 449 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l-------~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~~---- 449 (673)
.+.|+.+.|..++.++.... ..++.....+ +......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999887755 3344333333 33334456 888888877765432 122332
Q ss_pred -HhHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 450 -DAYICLIESYLRKGEPA---DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI 525 (673)
Q Consensus 450 -~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 525 (673)
.+...++.+|...+..+ +|.++++.+.+.. .-...++..-+..+.+.++.+++.+.+.+|+..-.- ....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHH
Confidence 45677888888877765 4666666665432 222444445566777789999999999999887221 22333333
Q ss_pred HHHH---HcCCCHHHHHHHHHHHHhCCCCCCHH-H-------HHHHHHccC------ChHHHHHHHHHHhcC-CCCCChH
Q 005856 526 LEAL---LMRGHVEEALGRIDLMMQSGSVPNFD-S-------LLSVLSEKG------KTIAAVKLLDFCLGR-DCIIDLA 587 (673)
Q Consensus 526 ~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~-------~~~~~~~~g------~~~~A~~~~~~~~~~-~~~~~~~ 587 (673)
+..+ ... ....|...+..++.....|..+ . ........+ +.+....+++..... +.+.+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3333 333 3456666666666544554432 1 111111221 244444445432221 1122221
Q ss_pred h-------HHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 588 S-------YEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 588 ~-------~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
. .-.-+...++.++|++|.++|+-.+
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1 1123455677899999999988654
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.7 Score=42.42 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHHH
Q 005856 127 KSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS-----RGISLDVVTYNT 201 (673)
Q Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 201 (673)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555556666666666666666665542 23555566666666666666666666655543 355565555555
Q ss_pred HHHH
Q 005856 202 MING 205 (673)
Q Consensus 202 ll~~ 205 (673)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.99 E-value=12 Score=41.40 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=9.1
Q ss_pred HHHhccCCHHHHHHHHHHH
Q 005856 492 ESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~ 510 (673)
.+|..+|+|.+|+.+..++
T Consensus 973 ~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHhccHHHHHHHHHhh
Confidence 3444455555555444443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=10 Score=40.41 Aligned_cols=138 Identities=10% Similarity=0.055 Sum_probs=64.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHH
Q 005856 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA 321 (673)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 321 (673)
.+.|++..+.++...+...-+ .....|..+.... .....++....+++- .-.|.....-......+.+.+++...
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHccCHHHH
Confidence 466777777666666543211 1112222222211 122344444444332 11232334444444455556666655
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhH
Q 005856 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (673)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (673)
...+. . .+.+....-....+....|+.++|....+.+-..+ ...+..++.++..+.+.|....
T Consensus 119 ~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g---------~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 119 LAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG---------KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------CCCChHHHHHHHHHHHcCCCCH
Confidence 55221 1 13444444555666677777766666655553221 1223456666666665554433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.9 Score=35.49 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE-PTRHTYNVML 168 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 168 (673)
-+.+|+.+.--+...|+++.|.+.|+...+.+...+-...|.-|..| --|++.-|.+-|.+.-+.+.. |-...|..+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 46678888888888899999999999888865333333334333333 458888888777777554321 2222232222
Q ss_pred HHHHhcCCHHHHHHHHH-HHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC------CCCHHHHHHHHHHH
Q 005856 169 WGFFLSLKLETAIRFFE-DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNI------EPTVISYTTMIKGY 241 (673)
Q Consensus 169 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~ 241 (673)
-..-++.+|..-+. +.... |..-|...+-.|.- |.+. ...+++++....- ..-+.+|--+.+.+
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 23456666665443 33333 55555544433321 1111 1122222221100 01245788888889
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 005856 242 VAVERADDALRIFDEMKSFD 261 (673)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~ 261 (673)
...|+.++|..+|+......
T Consensus 248 l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 248 LSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccccHHHHHHHHHHHHHHh
Confidence 99999999999998887654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.81 E-value=7.3 Score=38.25 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=40.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005856 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVE 512 (673)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (673)
...+|..++..+.+.|+++.|...+..+...+... .......-+..+...|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777777777777777776533111 223333344556667777777777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.72 Score=41.45 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=73.0
Q ss_pred ccCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 005856 123 ERSVKSYDALFKLILRR-----GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVV 197 (673)
Q Consensus 123 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 197 (673)
..|-.+|...+..+... +..+-....++.|.+.|+..|..+|+.|+..+-+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 46777788777777543 556666777888999999999999999988764321 122221
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (673)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 247 (673)
.-...+ .|-+ +-+=+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~-HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFL-HYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHh-hCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 2222 2234688999999999999999999999999777643
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.45 E-value=4.1 Score=34.23 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=16.1
Q ss_pred HHHHHcCCccCHhhHHHHHHHHHHcCCHHH
Q 005856 115 DIMKQLGVERSVKSYDALFKLILRRGRYMM 144 (673)
Q Consensus 115 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 144 (673)
..+.+.+++++...+..+++.+.+.|++..
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344445555555555555665555555433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=8.4 Score=37.79 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=77.9
Q ss_pred cchHHHHHHhccCCCCChHHHHH-HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q 005856 6 WTTRLQNKIRALVPQFDHNLVYN-VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK 84 (673)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 84 (673)
....+...+|..+..++...+.. +....|+++++.+....+...- .....+...+++-....|+++.|..+-+.|+.
T Consensus 308 as~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 308 ASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 34556667777777777766665 4456788888888877665442 45566777777777888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005856 85 KGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (673)
Q Consensus 85 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 121 (673)
..+. ++.+........-..|-++++.-.|.++...+
T Consensus 386 ~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 386 NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 6665 55555544444455677788888888877654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.34 E-value=3.9 Score=33.60 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChH
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTI 568 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~ 568 (673)
.++..+...+.......+++.+...+. .+....+.++..|++.+ ..+.++.++. ....-+...++..|.+.+.++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCcHH
Confidence 344444445555555555555555543 34445555555555432 2333333331 112223444555555555555
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhc-CChHHHHHHHHH
Q 005856 569 AAVKLLDFCLGRDCIIDLASYEKVLDALLAA-GKTLNAYSILFK 611 (673)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~~ 611 (673)
++.-++.+. ..+...+..+... ++++.|++++.+
T Consensus 87 ~~~~l~~k~---------~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 87 EAVELYKKD---------GNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHhh---------cCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 555555532 1122233333333 556666665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=6.2 Score=35.80 Aligned_cols=200 Identities=17% Similarity=0.083 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHH--cCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH-
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMK--KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE- 457 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 457 (673)
..+......+...+....+...+..... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3455556666667777777777776665 335555666777777777777888888887777643332 122222233
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGH--SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 67788888888888888755221 0122333333444566788888888888888764332356667777888888888
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 536 EEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
+.|...+..... ..|+ .......+...+.++++...+++.....+.
T Consensus 219 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888877 4443 233444445667788888888888876543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.1 Score=38.39 Aligned_cols=95 Identities=15% Similarity=0.003 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCC---CChHhHHH--
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI---IDLASYEK-- 591 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~-- 591 (673)
+..++..|.+.|+.++|++.|.++.+....|. +..++......+++..+..++.++....-. ++...--.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44455555555555555555555554333333 122333334455555555555444433111 11111011
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
-+-.+...|++.+|.+.|-.....-
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHhchHHHHHHHHHccCcCC
Confidence 2233445788888888877766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.13 Score=29.67 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=24.5
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005856 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHAR 76 (673)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 76 (673)
|+++++.+ |.++.+|..+..++...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666 778888888888888888888775
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=10 Score=37.29 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------c----cCChHHHHHHHHHHhcCCCCCChHhH--HHHHHHHHh
Q 005856 532 RGHVEEALGRIDLMMQSGSVPNFDSLLSVLS-------E----KGKTIAAVKLLDFCLGRDCIIDLASY--EKVLDALLA 598 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~-------~----~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~l~~ 598 (673)
.|+.++|+.++-.+.. +.|+...+..-|- + -|..-...+.++.+.+.-.-.+...| ...+-.-..
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH 788 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH
Confidence 4788999988776665 8888554443332 1 23332233333333332111111122 111122234
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 005856 599 AGKTLNAYSILFKIMEKGGVTDWKS--SDKLIAGLNQ 633 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 633 (673)
..+|.+|.++++++-+.+++..+++ ...++.++.+
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 789 LRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 5688999999999888776655443 2335555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.91 E-value=14 Score=38.83 Aligned_cols=13 Identities=15% Similarity=-0.212 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q 005856 602 TLNAYSILFKIME 614 (673)
Q Consensus 602 ~~~A~~~~~~~~~ 614 (673)
...|.+++++..+
T Consensus 525 ~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 525 LHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHh
Confidence 4555555555554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.33 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|..++.++...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.34 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+..++..+...|++++|++.+++++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999988753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.6 Score=40.19 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=61.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHhHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADAYICLI 456 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 456 (673)
++..++..+...|+.+.+...++.+....|.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 5666777788888888888888888888888888888888888888888888888887764 47777777766655
Q ss_pred HH
Q 005856 457 ES 458 (673)
Q Consensus 457 ~~ 458 (673)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 54
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.5 Score=43.59 Aligned_cols=85 Identities=12% Similarity=-0.064 Sum_probs=37.3
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcch
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQ 639 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (673)
-|.++|++++|+..+.+++...|. ++..|...+-+|++..++..|..-+..++.... .-..+|..-+.+-...|+.++
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 344555555555555555544322 233333444555555555555554444443321 122333333344444444455
Q ss_pred HHHHHHH
Q 005856 640 ADILSRM 646 (673)
Q Consensus 640 a~~~~~~ 646 (673)
|.+=.+.
T Consensus 184 AKkD~E~ 190 (536)
T KOG4648|consen 184 AKKDCET 190 (536)
T ss_pred HHHhHHH
Confidence 4333333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.04 E-value=11 Score=35.60 Aligned_cols=133 Identities=14% Similarity=0.220 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCC-
Q 005856 212 MDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA--VE----RADDALRIFDEMKSFD---VKPNAVTYTALLPGLCDAGK- 281 (673)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~- 281 (673)
+++...+++.+.+.|+..+..+|-+..-.... .. ....+..+|+.|++.. -.++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677777777777666665543333222 22 2456778888887653 13455556655543 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCcHH-hHHHHHHHHhccCC--hHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 282 ---MVEVQKVLREMVERYIPPKDNS-VFMKLLGVQCKSGH--LNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 282 ---~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
.+.+..+|+.+.+.|....|.. ....++.......+ ...+..+++.+.+.+++.....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3556677777777776665553 33333333332222 34677888888888888888877665543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.96 E-value=20 Score=38.50 Aligned_cols=219 Identities=12% Similarity=0.060 Sum_probs=118.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCchhhHHH
Q 005856 422 RGHSKEGNPDSAFEIVKIMGRRGVPRDA-------DAYICLIE-SYLRKGEPADAKTALDSMIED----GHSPASSLFRS 489 (673)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~ 489 (673)
-......++.+|..++.++...-..|+. ..|+.+-. .....|++++|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3345568889998888877654222221 13333322 234568889998888887653 12233455666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCH---HHHHHH--HHHHHcCCCHHH--HHHHHHHHHh--CCCCCC--HH---
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKENL---DLVAKI--LEALLMRGHVEE--ALGRIDLMMQ--SGSVPN--FD--- 555 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~g~~~~--A~~~~~~~~~--~~~~p~--~~--- 555 (673)
+..+..-.|++++|..+.+...+..-.-+. ..|..+ ...+...|.... ....+..... .+-.|. +.
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 667777889999999888877665222222 233333 233456674333 2333333222 122333 11
Q ss_pred --HHHHHHHc-cCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHH
Q 005856 556 --SLLSVLSE-KGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEK----GGVTDWKSSDK 626 (673)
Q Consensus 556 --~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 626 (673)
.+.+.+.+ .+...++..-++-.....+.+- ...+..++......|+.++|...+.++..- +..+++.+...
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 12222222 2223333333332222222222 222236788888899999999998887652 23566777666
Q ss_pred HHHHHH--hcCCcchH
Q 005856 627 LIAGLN--QEGNTKQA 640 (673)
Q Consensus 627 l~~~~~--~~g~~~~a 640 (673)
.+.+.. ..|+.++|
T Consensus 663 ~v~~~lwl~qg~~~~a 678 (894)
T COG2909 663 KVKLILWLAQGDKELA 678 (894)
T ss_pred HhhHHHhcccCCHHHH
Confidence 666644 55666665
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.39 Score=28.14 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
|..+...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.31 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 591 KVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 591 ~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.++.+|...|+.+.|.+++++++..++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 578889999999999999999886554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=19 Score=37.86 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=73.0
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC-----CHhHHHHHHHHHHHcCCCCHHhHHHHHH
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG-----QTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (673)
....+.+.|+.+|+.+.+..... ...+ .......+..+|.+.. +...|..++.+..+.+.++.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~-a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKA-ATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHH-Hhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34566777777777774410000 0011 2223445555555532 4566777777777766555554444333
Q ss_pred HHHh-cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc
Q 005856 423 GHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (673)
Q Consensus 423 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (673)
.... ..+...|.++|..+.+.|.. ..+..+..+|. -..+...|..++.+..+.| .|...-....+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 3333 23456677777666665532 22222222221 1224455666666655554 2221222222222333
Q ss_pred CCHHHHHHHHHHHHHcC
Q 005856 498 GRVQTASRVMKSMVEKG 514 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~ 514 (673)
+.++.+...+..+.+.+
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 44555544444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.65 E-value=2.8 Score=36.14 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCccCHhhHHHHHHHHHHcCCHHHH
Q 005856 73 NHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL---GVERSVKSYDALFKLILRRGRYMMA 145 (673)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A 145 (673)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555544443334444444444443 44555666655555443 1234555666666666666666555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.52 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..|..++.++...|++++|++.++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 457789999999999999999999988753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.59 E-value=12 Score=35.26 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHH--c----CCHHHHHHHHHHHHhC
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILR--R----GRYMMAKRYFNKMLSE 155 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~ 155 (673)
++...+++.+.+.|+..+..+|-+....... . .....|..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666665555443332222 1 1244556666666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.51 E-value=7.6 Score=32.68 Aligned_cols=136 Identities=11% Similarity=0.167 Sum_probs=73.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005856 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERY 296 (673)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 296 (673)
+.+..+...+++|+...+..++..+.+.|++.. +..+...++-+|.......+-.+. +....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 444555566677777777777777777776544 333444555555555554443322 2233444444444442
Q ss_pred CCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 297 IPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
-...+..++..+...|++-+|.++.+..... +......++.+-.+.++...-..+++-..+.+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1113455566677777777777777664322 11123445566666666665555555554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.5 Score=27.07 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.31 E-value=23 Score=37.80 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCHHhHHHH
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNL 420 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l 420 (673)
....+.-.|+++.|++.+-.. .....+..++...+..|.-.. .....-..+.... .+.+.-+..|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~----------~~~~~dAVH~AIaL~~~gLL~---~~~~~~~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN----------EFNRVDAVHFAIALAYYGLLR---VSDSSSAPLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------------T-HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhh----------ccCcccHHHHHHHHHHcCCCC---CCCccccceeeecCCCCCCcCHHHH
Confidence 344556678888888877652 112234444443333322211 1111112222222 1222456677
Q ss_pred HHHHHhc---CChhHHHHHHHHHHhC
Q 005856 421 IRGHSKE---GNPDSAFEIVKIMGRR 443 (673)
Q Consensus 421 ~~~~~~~---~~~~~A~~~~~~~~~~ 443 (673)
+..|.+. .++.+|.+++-.+...
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 7777653 5677777777666553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.20 E-value=5.4 Score=34.27 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 199 YNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRIFDEM 257 (673)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (673)
+..+...|++.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444555555544444444322111 122333444444444444444444333
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.13 E-value=9.8 Score=31.61 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=24.0
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
+.++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555554444443333333334444445555555555555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.02 Score=47.57 Aligned_cols=92 Identities=10% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHH
Q 005856 18 VPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL 97 (673)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 97 (673)
.+..++..+...+.+.+.+..+..+++.+...+ ...+....+.++..|++.+..+...++++.... .++ ..+
T Consensus 5 ~~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~-----~~~ 76 (143)
T PF00637_consen 5 TDPLEISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDL-----DKA 76 (143)
T ss_dssp CTTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-C-----THH
T ss_pred CCccCHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCH-----HHH
Confidence 344555666777777788888888888887655 345677788888888888777777777763322 221 345
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 005856 98 IESYGKKGIVQESVKIFDIM 117 (673)
Q Consensus 98 i~~~~~~~~~~~a~~~~~~~ 117 (673)
+..+.+.|.++.+.-++.++
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCC
T ss_pred HHHHHhcchHHHHHHHHHHc
Confidence 55566666666666655554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.6 Score=39.19 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=54.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG 498 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (673)
-..-|.++|.+++|+..|...... .| +++++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 456677788888888888776664 34 77777777778888777777766655554321 001112222233333345
Q ss_pred CHHHHHHHHHHHHHcC
Q 005856 499 RVQTASRVMKSMVEKG 514 (673)
Q Consensus 499 ~~~~a~~~~~~~~~~~ 514 (673)
...+|.+-++.+++..
T Consensus 180 ~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALE 195 (536)
T ss_pred hHHHHHHhHHHHHhhC
Confidence 5566666666665553
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.44 E-value=14 Score=34.00 Aligned_cols=168 Identities=9% Similarity=0.130 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc-CCCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 005856 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK-KGVQWDEDMFEVLIESYGKK-G-IVQESVK 112 (673)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~a~~ 112 (673)
-++-..+++-....-....+.. |..++. ++....+|+.+|+..-. ..+-.|..+...+++..... + ....-.+
T Consensus 112 ~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 112 KEDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 3455566665544331112222 444443 34456778888874322 23445777777777777652 2 2233334
Q ss_pred HHHHHHHc-CCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 005856 113 IFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFED---- 186 (673)
Q Consensus 113 ~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---- 186 (673)
+.+-+... |-.++..+...++..++..+++..-.++++..... +...|...|..+|+.....|+..-...+.++
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLL 267 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLL 267 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeE
Confidence 44444332 34677778888889999999999999998887655 5566888899999999999998888887766
Q ss_pred -HHhCCCCcCHHHHHHHHHHHH
Q 005856 187 -MKSRGISLDVVTYNTMINGYN 207 (673)
Q Consensus 187 -~~~~~~~~~~~~~~~ll~~~~ 207 (673)
+.+.++..+...-..+-..+.
T Consensus 268 wikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 268 WIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred EeeecCCcCCHHHHHHHHHHHH
Confidence 345566666666555555443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.31 E-value=60 Score=39.51 Aligned_cols=327 Identities=12% Similarity=0.112 Sum_probs=176.9
Q ss_pred CCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHhhcccCCCCCCHHHHHH
Q 005856 18 VPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIE-ILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (673)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (673)
....+...+..+-.+++.+.+|+-.++.-........-...+..+++ +|+..++++...-+...-.. +...+..
T Consensus 1381 L~~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q 1455 (2382)
T KOG0890|consen 1381 LDLIPSDTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ 1455 (2382)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH
Confidence 33445566777888899999999999985221100112233444454 99999999998888774211 3333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcC
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSL 175 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 175 (673)
+ -.....|+++.|...|+.+.+.+ ++...+++.++......|.++..+...+-.... ..+....++.+ +.+-.+.+
T Consensus 1456 i-l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1456 I-LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred H-HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhc
Confidence 3 45567899999999999999876 344777888887777788888888876666543 23333334333 34446778
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHH--HHHHHcC--CChHHHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHH
Q 005856 176 KLETAIRFFEDMKSRGISLDVVTYNTM--INGYNRF--KKMDEAEKLFAEMKEK--------NIEP-TVISYTTMIKGYV 242 (673)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~--~~~~~a~~~~~~~~~~--------~~~~-~~~~~~~ll~~~~ 242 (673)
+++.....+. .. +..+|.+. .....+. .|.-.-.+..+.+.+. +... -...|..+++.+.
T Consensus 1533 qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~ 1605 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHL 1605 (2382)
T ss_pred chhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHH
Confidence 8887777665 22 22333222 2222221 2211111222222211 1110 1123444444332
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHH-HHH----HCCCCCCcHHhHHHHHHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNA------VTYTALLPGLCDAGKMVEVQKVLR-EMV----ERYIPPKDNSVFMKLLGV 311 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~-~~~----~~~~~~~~~~~~~~l~~~ 311 (673)
-..-.. ..+... ++.++. .-|..-+..-....+..+-+-.++ .+. +.+....-...|....+.
T Consensus 1606 l~el~~----~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAri 1679 (2382)
T KOG0890|consen 1606 LLELEN----SIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARI 1679 (2382)
T ss_pred HHHHHH----HHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 211111 111111 112211 112111111111111111111111 111 113333356678888888
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 312 QCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
..+.|+++.|...+-...+.+ . +..+--.+..+-+.|+...|+.+++..++...
T Consensus 1680 aR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1680 ARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888999999988777766654 2 33344555666788999999999998886654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.25 E-value=34 Score=36.61 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHH-hcCChHHHHHHHhhcccCCCCCCH-----HHHHHHHHHHHhcCCH
Q 005856 36 SEHALQFFRWVERAGLFNHDR--ETHLKMIEILG-RVGKLNHARCILLDMPKKGVQWDE-----DMFEVLIESYGKKGIV 107 (673)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~ 107 (673)
...|++-++.+.+....+|.. .++..++.++. ...+++.|+..+++.....-.++. .....++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345677777776544233322 35666777765 778899999999876433211221 1223445566555555
Q ss_pred HHHHHHHHHHHHcC----CccCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCH
Q 005856 108 QESVKIFDIMKQLG----VERSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEG---IEPTRHTYNVMLWGFF--LSLKL 177 (673)
Q Consensus 108 ~~a~~~~~~~~~~g----~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 177 (673)
. |...+++..+.- ..+-...+.-+ +..+...+++..|.+.++.+.... ..|...++..++.+.. ..+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888888766531 11112222223 223333478999999988875532 2344445555555544 34556
Q ss_pred HHHHHHHHHHHhCC---------CCcCHHHHHHHHHHHH--cCCChHHHHHHHHHH
Q 005856 178 ETAIRFFEDMKSRG---------ISLDVVTYNTMINGYN--RFKKMDEAEKLFAEM 222 (673)
Q Consensus 178 ~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 222 (673)
+.+.+.++.+.... ..|...+|..+++.++ ..|++..+...++++
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66766666653221 1334566777766554 567766666655554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.22 E-value=35 Score=36.74 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=86.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDV--VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 245 (673)
=+.|...|+++.|.++-..- |+. .++..-.+.|...+++..|-+++.++.+ .|..+.--+....
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 34566777777777665332 232 2333444566777888888888877643 3444444455555
Q ss_pred CHHHHHHHH-HHHHhCCCCCCHHHHHHHHH-----HHH-cCCCH----HHHHHHHHH--------HHHCCCCCCcHHhHH
Q 005856 246 RADDALRIF-DEMKSFDVKPNAVTYTALLP-----GLC-DAGKM----VEVQKVLRE--------MVERYIPPKDNSVFM 306 (673)
Q Consensus 246 ~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~-----~~~-~~~~~----~~a~~~~~~--------~~~~~~~~~~~~~~~ 306 (673)
+.+ +++.| .+=.+ .++|...+-..++. .|. +.++. +.+..-++. +........+.....
T Consensus 431 ~~~-~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nre 508 (911)
T KOG2034|consen 431 QER-ALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRE 508 (911)
T ss_pred CHH-HHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 544 33333 22222 23444433332222 111 12221 122211111 111001111222333
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 307 KLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 307 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
+....+...|+.+....+-.-+.+ |..++..+.+.|.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455566777766665555544 677888888888888888887654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.96 E-value=2.7 Score=29.71 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=27.8
Q ss_pred ccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
.....++|+..++++++..+.+. +..+..++.+|...|++.+++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666544433 3444555666666666666665533
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.84 E-value=1 Score=27.31 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+++.++..|...|++++|.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567888999999999999999988775
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.68 E-value=13 Score=30.95 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=30.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhHH-HHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSYD-ALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
.+.++.+++..+++.+.-.. |...... .-...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45567777777777766532 3332222 2233456667777777777776554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.39 E-value=1.3 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.|..++..|...|++++|.+.++++++-
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667888899999999999999988763
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=23 Score=33.30 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALL 273 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 273 (673)
+..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3344444444432 23333333333433332 12344444444442 34555555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHh
Q 005856 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (673)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (673)
.++.+.|+. .+...+-..++.+ + .....+.++...|+. .|...+..+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555553 3333333333321 1 223444555555553 45555555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.044 Score=45.46 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A 570 (673)
+..+.+.+.......+++.+...+...+....+.++..|++.+..++..++++.. ..-+...++..+.+.|.+++|
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~----~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS----NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS----SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc----cccCHHHHHHHHHhcchHHHH
Confidence 3445555555666666666665544445555566666666665555555554411 111223344455555555555
Q ss_pred HHHHH
Q 005856 571 VKLLD 575 (673)
Q Consensus 571 ~~~~~ 575 (673)
.-++.
T Consensus 90 ~~Ly~ 94 (143)
T PF00637_consen 90 VYLYS 94 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.16 E-value=0.79 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.230 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
...++.++...|+.++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3457777888888888877765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.14 E-value=13 Score=33.19 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005856 568 IAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 620 (673)
..|...|+++......| .......++....+.|++++|.+.+.+++..+..+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 44555555555543221 133445678888899999999999999998776544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.91 E-value=31 Score=34.53 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=91.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCH
Q 005856 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP 414 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (673)
.|....-+++..+...-.+.-...+..+++.-+ -+...|..++.+|... ..+.-..+|+++.+..-.+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----------e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv 132 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV 132 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc----------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH
Confidence 344445555666666555666666666665433 2334555666666555 44555566666665554444
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCchhhHH
Q 005856 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-----DADAYICLIESYLRKGEPADAKTALDSMIED-GHSPASSLFR 488 (673)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 488 (673)
..-..|+..|-+ ++.+.+..+|..+...-++. -...|..+...- ..+.+..+.+..+.... |..--...+.
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 444555555544 55566666666555431110 012333333211 24455555555555432 3323334444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (673)
-+..-|....++.+|++++..+++.+-+ |...-..++.
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 4445566677777777777776665433 3333333433
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.87 E-value=39 Score=35.59 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=61.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRRGVPRD--ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRV 500 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (673)
++..-|+-++|..+.++|.... .|- ..-..++..+|+-.|+.....+++.-.... ...|..-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444455666777777776532 111 112233455666666666655655554432 223333333334445556666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 501 QTASRVMKSMVEKGVKENLDLVA--KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+....+.+-+.+. ..|.+..=. .+.-+|...|. .+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7666666665554 333333222 23333444443 667777776664
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.1 Score=25.23 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+..++.++.+.|++++|.+.+++++..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 346788888888889998888888765
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.35 E-value=4.8 Score=31.99 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=38.3
Q ss_pred HHHHHHHcc---CChHHHHHHHHHHhc-CCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 556 SLLSVLSEK---GKTIAAVKLLDFCLG-RDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 556 ~~~~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.+.+++.+. .+..+.+.+++..++ ..+.-.......|+-++++.|+|+.++++++.+++.
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666543 345666777777775 222223333345778888888888888888877654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.31 E-value=27 Score=33.13 Aligned_cols=150 Identities=14% Similarity=0.010 Sum_probs=74.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc----c
Q 005856 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE----D 497 (673)
Q Consensus 426 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 497 (673)
..+++..+...+......+ +......+...|.. ..+..+|...+..+.+.|..+- ...+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a---~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEA---LFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHH---HHhHHHHHhcCCCcc
Confidence 4566777777777776543 22333333333332 2345667777776665543222 2223333322 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCC
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR----G---HVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGK 566 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~ 566 (673)
.|..+|..+++++.+.|..+.......+...|..- + +...|...+.++...+.......+...|.. ..+
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 36777777777777776543212233344444332 1 122566666665555433333334433332 235
Q ss_pred hHHHHHHHHHHhcCC
Q 005856 567 TIAAVKLLDFCLGRD 581 (673)
Q Consensus 567 ~~~A~~~~~~~~~~~ 581 (673)
.++|..+|+++.+.+
T Consensus 207 ~~~A~~wy~~Aa~~g 221 (292)
T COG0790 207 LKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHHHCC
Confidence 566666666666655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.23 E-value=11 Score=38.19 Aligned_cols=153 Identities=17% Similarity=0.096 Sum_probs=89.4
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.+.-.|+++.|-.++..+. ......++..+-+.|..++|+++- .+|+. -.....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHH
Confidence 3334556666655443321 334445566666677766666542 11221 123344667777
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
.|..+..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+.+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 777765554 3456677888888888888888877776532 4456666666777766666666666
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 005856 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (673)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (673)
+.|.. |...+ +|...|+++++.+++.+-
T Consensus 720 ~~g~~-N~AF~-----~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKN-NLAFL-----AYFLSGDYEECLELLIST 747 (794)
T ss_pred hhccc-chHHH-----HHHHcCCHHHHHHHHHhc
Confidence 55533 33322 344567888777776554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.98 E-value=9.5 Score=35.31 Aligned_cols=97 Identities=10% Similarity=0.155 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHh-----hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-----SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTY 164 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 164 (673)
...+....+..-....+++++...+-.++.. |+.. +-...++.+.+ -++++++.++..-+..|+-||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 3333344444444456677777766666542 2211 12223333333 4566777777777777888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 165 NVMLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
+.++..+.+.+++..|.++...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888777777666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.3 Score=25.26 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555555544
|
... |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=15 Score=33.96 Aligned_cols=76 Identities=16% Similarity=-0.055 Sum_probs=53.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG-GVTDWKSSDKLIAGLN 632 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 632 (673)
.+-.++.+.++++.|..+.+.++...|. ++.-+...+-+|.+.|.+..|..=++..+++. ..|+.......+..+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3555667788888888888888887654 45556678888889999999999888888754 3444444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.40 E-value=56 Score=34.94 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc--
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEPTVISYTTMIKGYVAV-- 244 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~-- 244 (673)
...+.-.|++|.|.+.+-. ..+...+...+...+..|.-.+-..... ..+.... -.|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667888888888876 2223345555555555443222222111 2222111 011125567777777753
Q ss_pred -CCHHHHHHHHHHHHhC
Q 005856 245 -ERADDALRIFDEMKSF 260 (673)
Q Consensus 245 -~~~~~a~~~~~~~~~~ 260 (673)
.+...|.++|-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 5677888877766554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.40 E-value=11 Score=27.96 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCc-chHHHHHHHHH
Q 005856 572 KLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-DWKSSDKLIAGLNQEGNT-KQADILSRMIR 648 (673)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 648 (673)
.-+++.++.+|. +...-..++..+...|++++|++.+-.++...... +-..-..|+..+...|.- +.+....++|.
T Consensus 9 ~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 9 AALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 344556666655 44555578999999999999999999988764322 333444577777777774 34455555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.18 E-value=7 Score=28.96 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 73 NHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMK 118 (673)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 118 (673)
=++++-++.+...+.-|++.+..+.+++|.+-+++..|.++|+.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455556666666666777777777777777777777777777665
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.01 E-value=17 Score=32.40 Aligned_cols=85 Identities=16% Similarity=0.006 Sum_probs=58.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHccCChH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEKGKTI 568 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g~~~ 568 (673)
-|.....++.|+..|.+.+..++. ....|..-+.++.+..+++.+..--.+.++ +.|+.. .+...+.....+.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 356667788888888887776543 234556667777888888888777777766 677732 3445555677888
Q ss_pred HHHHHHHHHhcC
Q 005856 569 AAVKLLDFCLGR 580 (673)
Q Consensus 569 ~A~~~~~~~~~~ 580 (673)
+|+..++++.+.
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.97 E-value=2.4 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777776654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.61 E-value=6.3 Score=33.33 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.++.|..+|+++++.+ |+...|..-.++. ..|-++..++..++
T Consensus 95 ~F~kA~~~FqkAv~~~--P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 95 YFEKATEYFQKAVDED--PNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcC--CCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 4677777788888764 5666775444433 23555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.4 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.++.++.+.|++++|.+.++++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 355555566666666666666655
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.24 E-value=62 Score=34.48 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 005856 200 NTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
..|+..|...++++.|..++-...
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 336777777777777777765554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.19 E-value=22 Score=29.15 Aligned_cols=52 Identities=13% Similarity=-0.129 Sum_probs=31.8
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
..++.+++..+++.+.-..|..+..-..-...+...|++.+|.++|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666666655544444444455556666777777777666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=65 Score=34.61 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=28.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
....-+......++++.+...+..|.... .....-..-+..++...|+.++|...|+.+
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444445566665555555553321 122222333445545556666666666655
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.65 E-value=12 Score=27.93 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.+...|+|++|..+.+.. +.|+.+.| ++-+-++.|-...+...+.++-.++.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw--~ALce~rlGl~s~l~~rl~rla~sg~ 99 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPW--LALCEWRLGLGSALESRLNRLAASGD 99 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHH--HHHHHHhhccHHHHHHHHHHHHhCCC
Confidence 355688888888776522 45666666 44455678888877777777776663
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.49 E-value=44 Score=32.22 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc---cCCHHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE---DGRVQTASRVMK 508 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~ 508 (673)
.-+.+++++.+.+. .+...+..++..+.+..+.++..+.|+++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34456666655532 355566666666666666666666676666532 2245555555544332 223455555554
Q ss_pred HHHHc------CC------CCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 005856 509 SMVEK------GV------KEN-----LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (673)
Q Consensus 509 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (673)
+.++. +. .+. ...+..+...+.++|..+.|+.+++.+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44332 11 000 12233344455678888888888888887543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.35 E-value=42 Score=31.83 Aligned_cols=151 Identities=14% Similarity=0.050 Sum_probs=77.0
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cC
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KG 463 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 463 (673)
..+++..+...+......+.+ .....+...|.. ..+...|..+|+.+.+.|. ......|...|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 345666666666666654322 333344444432 2355667777776665542 2233334444443 23
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc-----C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----C
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFED-----G--RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----R 532 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 532 (673)
+..+|...+++..+.|..+...+...+...+... - +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 6667777777777666544312222223333221 1 2235666666666665 33444444444432 2
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 005856 533 GHVEEALGRIDLMMQSGS 550 (673)
Q Consensus 533 g~~~~A~~~~~~~~~~~~ 550 (673)
.++++|...|+...+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 256777777776666555
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.18 E-value=9.5 Score=35.29 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=69.0
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYI 453 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 453 (673)
....+...++..-....+++.+...+-++.... .++. +-...++.+.+ -++++++.++..-.+-|+-||.++++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence 344455555655556678888888777766543 1111 22233333333 36778888888888889999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 454 CLIESYLRKGEPADAKTALDSMIED 478 (673)
Q Consensus 454 ~l~~~~~~~~~~~~A~~~~~~~~~~ 478 (673)
.+++.+.+.+++.+|..+...|+..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999998888877654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.18 E-value=11 Score=27.92 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
++.+-++.+....+.|+.....+.+++|.+.+|+..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.72 E-value=57 Score=32.87 Aligned_cols=60 Identities=8% Similarity=0.119 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
...-+++..+..+-...-+..+..+|...| -+...|..++.+|... ..+.-..+++++++
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 334444444444444444445555554432 2444445555554444 33444444444444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.64 E-value=18 Score=27.19 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (673)
+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666777667666666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.60 E-value=23 Score=28.34 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=49.5
Q ss_pred CCchhhHHHHHHHHhccC---CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 481 SPASSLFRSVMESLFEDG---RVQTASRVMKSMVE-KGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.++..+--.+..++.++. +..+.+.+++.+.+ ..+.-.......|.-++.+.|++++++++.+.+++ ..|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 355555555666666654 45667788888876 33333455556677788888899999988888887 666643
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.55 E-value=23 Score=31.58 Aligned_cols=87 Identities=9% Similarity=0.005 Sum_probs=60.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhh-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSL-FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (673)
.|.....+..|...+.+.+. +.|+..+ |..-+..+.+..+++.+..--.+.++..+. .+.....+...+.....++
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 35556678889998887775 4577644 445555667788898888877777776332 2223344667777888899
Q ss_pred HHHHHHHHHHh
Q 005856 537 EALGRIDLMMQ 547 (673)
Q Consensus 537 ~A~~~~~~~~~ 547 (673)
+|+..+.+..+
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.93 E-value=1.4e+02 Score=36.79 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHh
Q 005856 236 TMIKGYVAVERADDALRIFDEMKSFDV--KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (673)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (673)
.+..+-.+.+.+..|+-.++.-..... .....-|..+...|...++++.+..+...... ++. +..-+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~s-l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPS-LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------Ccc-HHHHHHHHH
Confidence 344455566667777776666311100 11122333333467777777776666553111 222 223333445
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
..|++..|...|+.+.+.+ ++...+++.++......|.++..+...+..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 6677777777777777664 333555666666555666666665544433
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.81 E-value=61 Score=32.60 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHH
Q 005856 38 HALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE-SYGKKGIVQESVKIFDI 116 (673)
Q Consensus 38 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~ 116 (673)
.-..+|+.+... ++.|...|...+..+.+.+.+.+...+|.+|....+. ++..|..-.. .|-...+++.|..+|.+
T Consensus 89 rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 344555555544 3567777777777666666677777777776654322 4444433332 22233346667777766
Q ss_pred HHHcC
Q 005856 117 MKQLG 121 (673)
Q Consensus 117 ~~~~g 121 (673)
..+..
T Consensus 166 gLR~n 170 (568)
T KOG2396|consen 166 GLRFN 170 (568)
T ss_pred HhhcC
Confidence 66643
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.53 E-value=61 Score=32.43 Aligned_cols=105 Identities=14% Similarity=0.017 Sum_probs=62.0
Q ss_pred HHHcCCCHHHHHHHHHHHHh---CC--CCCC------HHHHHHHHHccCChHHHHHHHHHHhc-------CCCCC-----
Q 005856 528 ALLMRGHVEEALGRIDLMMQ---SG--SVPN------FDSLLSVLSEKGKTIAAVKLLDFCLG-------RDCII----- 584 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~---~~--~~p~------~~~~~~~~~~~g~~~~A~~~~~~~~~-------~~~~~----- 584 (673)
.++-.|++.+|.+++-..-- .| +.|. ++.++-+..+.|.+.-+..+|.+++. .|.+|
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556777777766543221 11 2332 23344455566777777777777663 23222
Q ss_pred -----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005856 585 -----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (673)
Q Consensus 585 -----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (673)
+.+.....+-.|...|+...|.+.|.+.+..- ...++.|-.|..++..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 13344467788888888888888888877653 3355666666666554
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.49 E-value=30 Score=31.69 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH----HhCCCCCC
Q 005856 523 AKILEALLMRGHVEEALGRIDLM----MQSGSVPN 553 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~ 553 (673)
..++..+.+.|.+.+|+.++..+ .+...+|+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 45778888999999999876544 44556666
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.33 E-value=28 Score=28.50 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=31.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSY-DALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
...++.+++..+++.|.-.. |+.... ..-...+...|++.+|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 44677777777777776532 333222 12223456777888888888877654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.05 E-value=43 Score=30.40 Aligned_cols=229 Identities=10% Similarity=0.094 Sum_probs=135.8
Q ss_pred CCCCCCCchhhHHHHHHHH-HccCCHhHHHHHHHHHHHcC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 005856 372 PQSTLDMEASSYNPMIQHL-CHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--- 443 (673)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 443 (673)
..++..||+..=+..-.+- .+...+++|+.-|++..+.. ...-.+...++..+.+.+++++....++++..-
T Consensus 18 dds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 18 DDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred cccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445556655433332221 23458889999999988765 233446677889999999999999888877531
Q ss_pred CC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc---
Q 005856 444 GV--PRDADAYICLIESYLRKGEPADAKTALDSMIED-----GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--- 513 (673)
Q Consensus 444 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 513 (673)
.+ .-+....|.+++....+.+.+--.++++.-.+. +-..-..|-..+...|...|.+..-.++++++...
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11 124456677777666666655544444433221 11111223345667778888888888888887653
Q ss_pred --CCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCC--HHHHHHHHH-----ccCChHHHHHHHHHH
Q 005856 514 --GVK------ENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPN--FDSLLSVLS-----EKGKTIAAVKLLDFC 577 (673)
Q Consensus 514 --~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~~~~~-----~~g~~~~A~~~~~~~ 577 (673)
|.. --...|..-+..|....+-.+-..+|++.+. ....|. ....+.-|+ +.|++++|-.-|-.+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 0134555566777777777777778887665 223333 333444443 578888887655445
Q ss_pred hcCC---CCCC---hHhHHHHHHHHHhcC
Q 005856 578 LGRD---CIID---LASYEKVLDALLAAG 600 (673)
Q Consensus 578 ~~~~---~~~~---~~~~~~l~~~l~~~g 600 (673)
.+.- .+|- .--|..++.++.++|
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 5431 1222 233566777777765
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.98 E-value=12 Score=32.75 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=58.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLIES 458 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~ 458 (673)
|.+..+..+.+.+...+++...+.-.+..|.+...-..+++.+|-.|++++|..-++..-+. ...+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667778889999999999888888888888889999999999999998888776653 223345566666654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.93 E-value=5.8 Score=28.09 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=40.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 596 LLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
++...+..+|+..+++++++-..+. +..+-.|+.+|..-|++.+.......
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999998754432 67777799999999999999765433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.80 E-value=86 Score=33.67 Aligned_cols=184 Identities=7% Similarity=0.018 Sum_probs=106.0
Q ss_pred HHHHHHhhcc-cCCCCCC--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCccCHh-----hHHHHHHHHHHcCCHHH
Q 005856 74 HARCILLDMP-KKGVQWD--EDMFEVLIESYG-KKGIVQESVKIFDIMKQLGVERSVK-----SYDALFKLILRRGRYMM 144 (673)
Q Consensus 74 ~a~~~~~~~~-~~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~l~~~~~~~g~~~~ 144 (673)
.|+..++.+. +..++|. ..++..+...+. ...+++.|...+++.....-.++.. +...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3455666555 3333332 334555666554 6689999999999876543222222 2334566666666555
Q ss_pred HHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHH--cCCChHH
Q 005856 145 AKRYFNKMLSEG----IEPTRHTYNVM-LWGFFLSLKLETAIRFFEDMKSRG---ISLDVVTYNTMINGYN--RFKKMDE 214 (673)
Q Consensus 145 A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~ 214 (673)
|...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 988888876541 11222233332 222223379999999998876542 3344555555555543 4566677
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 005856 215 AEKLFAEMKEKN---------IEPTVISYTTMIKGYV--AVERADDALRIFDEMK 258 (673)
Q Consensus 215 a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 258 (673)
+.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777663321 1234566777766554 6677777776666654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.56 E-value=20 Score=26.60 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCC-CHHHHHHHHHHHHhcCCH
Q 005856 41 QFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW-DEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 107 (673)
.-++.....+ |.+..+...+...+...|+++.|.+.+-.+++.+... +...-..++..+.-.|.-
T Consensus 9 ~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 9 AALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3345555555 6788888888889999999999999888888775443 344445555555444443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.38 E-value=84 Score=33.34 Aligned_cols=546 Identities=13% Similarity=0.094 Sum_probs=240.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcc-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMP-KKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 113 (673)
.....+...+.+.+.+.++-...+-..+..+|...|++++|+..--..- .-.+.++...+..++.-|... -.+.+.+.
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~ 116 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASET 116 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHH
Confidence 3445666666666666444333344566689999999999998876553 334455555555554433321 11222222
Q ss_pred HHHHH-HcCCccCH-hhHHHHHHHHHHcCCHHHHHH---------HHHH-HHhCCCCCCHHHHHHHHHHHHhcCC-HHHH
Q 005856 114 FDIMK-QLGVERSV-KSYDALFKLILRRGRYMMAKR---------YFNK-MLSEGIEPTRHTYNVMLWGFFLSLK-LETA 180 (673)
Q Consensus 114 ~~~~~-~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~---------~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 180 (673)
+..-. ..++++.. ...+.++..|...+++..|+. ++++ +.+....++ ..+.++..+....+ .+--
T Consensus 117 ~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR 194 (929)
T KOG2062|consen 117 YKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFR 194 (929)
T ss_pred hcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHH
Confidence 22111 11111111 123344444444444444433 2333 222222222 23333433333222 2333
Q ss_pred HHHHHHHHh---CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 181 IRFFEDMKS---RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (673)
Q Consensus 181 ~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (673)
.+++..+.+ ....|| |..+.++|....+.+.+.++++++.+.. .....|......+....+ +--..+.+.+
T Consensus 195 ~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~esasQ-efL~~v~~~l 268 (929)
T KOG2062|consen 195 NKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLYESASQ-EFLDSVLDRL 268 (929)
T ss_pred HHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHhhccCH-HHHHHHHHHc
Confidence 334444333 223444 4457788888899999999999998742 123344444444322211 1111122222
Q ss_pred HhC---CCCC---------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHH----
Q 005856 258 KSF---DVKP---------NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA---- 321 (673)
Q Consensus 258 ~~~---~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---- 321 (673)
... +-.| ...+....+..+.+.+..+. .+++...+.- ...-..+...+.+++...|-...-
T Consensus 269 ~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~--~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~ 345 (929)
T KOG2062|consen 269 PADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDL--LILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTFLRN 345 (929)
T ss_pred ccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchH--HHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHHHHh
Confidence 211 1111 11111222222233333221 1222222210 000111222234445554432211
Q ss_pred -HHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhH----HHHHHHHHccCC
Q 005856 322 -ADVLKAMIRLSIPTEAGHYGILI-ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSY----NPMIQHLCHNGQ 395 (673)
Q Consensus 322 -~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~ 395 (673)
+.++.+... -.-|+... -+....|...++.+++.-.+ |... +....| ..+.-++.+.|.
T Consensus 346 NL~WlskAtN------WaKFtAtAsLGvIH~G~~~~~~~ll~pYL-------P~~~--~~~s~y~EGGalyAlGLIhA~h 410 (929)
T KOG2062|consen 346 NLDWLSKATN------WAKFTATASLGVIHRGHENQAMKLLAPYL-------PKEA--GEGSGYKEGGALYALGLIHANH 410 (929)
T ss_pred chhHHhhcch------HhhhhhhhhcceeeccccchHHHHhhhhC-------CccC--CCCCCccccchhhhhhccccCc
Confidence 111111110 00011111 12345677788888887764 2211 111111 122233444455
Q ss_pred HhHHHHHHHHHHHcCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCChHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY--ICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~ 472 (673)
.+...+++....+... +....-.+|.-++...|.- -.++|+.++..-...+..+- ..+..+++-.|... .+.+
T Consensus 411 G~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eai 486 (929)
T KOG2062|consen 411 GRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAI 486 (929)
T ss_pred CccHHHHHHHHHHhccchhhhhhhhhhccchhcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHH
Confidence 5557777777666653 3333334455455544433 23455555542122222221 12233344444332 1233
Q ss_pred HHHHHcCC-CCchhhHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 473 DSMIEDGH-SPASSLFR--SVMESLFEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 473 ~~~~~~~~-~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
++|..... .-...+.. .+.-+|..-|+-++|..+.+++.... .|- ..-...++.+|+-.|+-....+++.-...
T Consensus 487 edm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 487 EDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 33332110 01111222 22234556677788999999987753 322 22234567788888886655555543222
Q ss_pred CCCCCCH---HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHH--HHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 548 SGSVPNF---DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYE--KVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 548 ~~~~p~~---~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
....|. ..+.-.+.-..+.+....+++-..+ ..+|-...-. .|+-+|...| ..+|+.+++.+...
T Consensus 566 -D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D 635 (929)
T KOG2062|consen 566 -DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSD 635 (929)
T ss_pred -ccchHHHHHHHHHheeeEecChhhchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcC
Confidence 122222 1222223346678888888874333 3333322112 3334444444 46799999998874
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.30 E-value=61 Score=31.69 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=45.4
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT---EAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
...++..++..+.+.|.++.|...+..+...+... .+...-.-+..+-..|+..+|+..++..++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677788888888888888888888877643211 233344445556677888888888877765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.16 E-value=37 Score=34.84 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHH
Q 005856 19 PQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98 (673)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 98 (673)
|+...+.+...|.++|-.++|+++-. .+.+-+ ....+.|+.+.|.++..+.. +..-|..|.
T Consensus 613 ~k~~rt~va~Fle~~g~~e~AL~~s~---------D~d~rF----elal~lgrl~iA~~la~e~~------s~~Kw~~Lg 673 (794)
T KOG0276|consen 613 PKEIRTKVAHFLESQGMKEQALELST---------DPDQRF----ELALKLGRLDIAFDLAVEAN------SEVKWRQLG 673 (794)
T ss_pred chhhhhhHHhHhhhccchHhhhhcCC---------Chhhhh----hhhhhcCcHHHHHHHHHhhc------chHHHHHHH
Confidence 35566777888888888888876542 122222 23457789999988876552 566789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 99 ESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLE 178 (673)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 178 (673)
++....+++..|.+.|..... |..|+-++...|+.+....+-....+.|.. | ...-++...|+++
T Consensus 674 ~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 674 DAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYE 738 (794)
T ss_pred HHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHH
Confidence 999999999999999988765 667777888888888777776666666532 2 2334566789999
Q ss_pred HHHHHHHHHH
Q 005856 179 TAIRFFEDMK 188 (673)
Q Consensus 179 ~a~~~~~~~~ 188 (673)
++.+++..-.
T Consensus 739 ~C~~lLi~t~ 748 (794)
T KOG0276|consen 739 ECLELLISTQ 748 (794)
T ss_pred HHHHHHHhcC
Confidence 9998886653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.1 bits (219), Expect = 2e-18
Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 5/224 (2%)
Query: 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKL---FAEMKEKNIEP 229
L L+ +S ++ A L ++K
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE-VQKV 288
T+ Y ++ G+ + + + +K + P+ ++Y A L + + +++
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFC 348
L +M + LL + ++ L A V + L+ +
Sbjct: 224 LEQM-SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282
Query: 349 KAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392
+ KL L + + Q +++ + ++
Sbjct: 283 AKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTL 326
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.9 bits (203), Expect = 1e-16
Identities = 29/252 (11%), Positives = 76/252 (30%), Gaps = 4/252 (1%)
Query: 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113
+ + + +++ R+ A C+ + E+ L++ K +
Sbjct: 55 GEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAP 114
Query: 114 FDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK---MLSEGIEPTRHTYNVMLWG 170
Q + + A FK L + +A + T YN ++ G
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 171 FFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA-EKLFAEMKEKNIEP 229
+ + + +K G++ D+++Y + R + E+ +M ++ ++
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289
+ ++ ++ P V + LL + V K+
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
Query: 290 REMVERYIPPKD 301
+ +
Sbjct: 295 LPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 1e-13
Identities = 34/241 (14%), Positives = 75/241 (31%), Gaps = 5/241 (2%)
Query: 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILL---DMPKKGVQWD 90
K S Q + ++ L + +L A +L+ +K
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM-MAKRYF 149
DM+ ++ + ++G +E V + ++K G+ + SY A + + R+ + +R
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 150 NKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209
+M EG++ V+L + L+ + V + ++
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY 269
KL +K + + V V + E+K +
Sbjct: 285 DGRVSYPKLHLPLKTLQCLFEKQLH-MELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 270 T 270
Sbjct: 344 Q 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 5e-10
Identities = 24/195 (12%), Positives = 65/195 (33%), Gaps = 5/195 (2%)
Query: 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAE---- 400
E + + KL + + Q+ L + + Q A
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 401 IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460
+ Q K+ +L +N ++ G +++G ++ ++ G+ D +Y ++
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 461 RKGEPA-DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL 519
R+ + A + L+ M ++G + ++ ++ +V +
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 520 DLVAKILEALLMRGH 534
+K+L + +
Sbjct: 272 VNTSKLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 5e-07
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 3/132 (2%)
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD---SMI 476
L++ + + D + + + + L + A L
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 477 EDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536
+ ++ +VM G + V+ + + G+ +L A L+ + +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 537 EALGRIDLMMQS 548
+ R M
Sbjct: 218 GTIERCLEQMSQ 229
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 8e-05
Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 5/146 (3%)
Query: 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKI---MGRRGVPRDADAYIC 454
+ + + + A ++ + ++ D Y
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR-VQTASRVMKSMVEK 513
++ + R+G + L + + G +P + + ++ + + T R ++ M ++
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 514 GVKENLDLVAKILEALLMRGHVEEAL 539
G+K L +L + R V +A+
Sbjct: 231 GLKLQ-ALFTAVLLSEEDRATVLKAV 255
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 3e-16
Identities = 75/500 (15%), Positives = 156/500 (31%), Gaps = 121/500 (24%)
Query: 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153
FE Y K I+ F V ++D K + + +++K + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAF-----------VDNFD--CKDVQDMPKSILSKEEIDHII 55
Query: 154 SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGY-NRFKKM 212
+ + + L+ LS + E +F E+ + + Y +++ ++
Sbjct: 56 ---MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-------VLRINYKFLMSPIKTEQRQP 105
Query: 213 DEAEKLFAEMKEK--NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270
+++ E +++ N Y V R L++ + N +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN--------VSRLQPYLKLRQALLELRPAKNVLID- 156
Query: 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF-MKLLGVQCKSGHLNAAADVLKAMI 329
G+ +GK V + D +F + L + N+ VL+ +
Sbjct: 157 ----GVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQ 203
Query: 330 RL----------------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI----- 368
+L +I + K++ Y+ + +L + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 369 ----IL---RPQSTLD--MEASSYNPMIQHLCHNGQTGKA-EIFFRQL-MKKGVLDPVAF 417
IL R + D A++ + + H + + + L + L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV- 322
Query: 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-------DADAYICLIESYLRKGEPADAKT 470
NP I+ R G+ + D +IES L EPA+ +
Sbjct: 323 --------LTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 471 ALDSM-I--EDGHSPASSLFRSVMESLFEDGRVQTASRVM-----KSMVEKGVKEN---- 518
D + + H P ++ ++ D V+ S+VEK KE+
Sbjct: 374 MFDRLSVFPPSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 519 ----LDLVAKILEALLMRGH 534
L+L K+ + H
Sbjct: 429 PSIYLELKVKLENEYAL--H 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 8e-06
Identities = 77/561 (13%), Positives = 168/561 (29%), Gaps = 198/561 (35%)
Query: 6 WTTRLQNKIRALVPQF-------DHNLVYNVLHGAKNSEHALQFFRWVE-RAGLFNHDR- 56
WT + + +V +F ++ + + + + + ++ ++E R L+N ++
Sbjct: 69 WTLLSKQE--EMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 57 ---------ETHLKMIEILGRVGKLNHARCILLD-MPKKGVQW-------DEDM-----F 94
+ +LK+ + L +L A+ +L+D + G W + F
Sbjct: 126 FAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 95 EVLIESYGKKGIVQESVKIFDIMKQL----------GVERSVKSYDALFKLILRRGRYMM 144
++ + + +++++L + S + + R +
Sbjct: 183 KIFWLNLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFF-LSLK-LETAIRFFEDMKSRGISL-DVV---- 197
+K Y N +L + + N W F LS K L T +R + D +
Sbjct: 240 SKPYENCLL---V--LLNVQNAKAWNAFNLSCKILLT---------TRFKQVTDFLSAAT 285
Query: 198 -TYNTMINGYNRFKKMDEAEKLFA---EMKE-------KNIEPTVIS------------- 233
T+ ++ + DE + L + + P +S
Sbjct: 286 TTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 234 ----------YTTMIKGYVAVERADDALRIFDEMKSF--DVK-PNAV------------- 267
TT+I+ + V + ++FD + F P +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 268 --------------------TYTALLPGL-CDAGKMVEVQKVL-REMVERY--------- 296
T + +P + + +E + L R +V+ Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 297 --IPPKDNSVFMKLLGVQCKSGHLNAAA---------------DVLKAMIRLSIPTEAGH 339
IPP + F +G HL L+ IR
Sbjct: 463 DLIPPYLDQYFYSHIGH-----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 340 YGIL-----IENF----CKAE-MYDRAIKLLDKLVEK--EIILRPQSTLDMEASSYNPMI 387
IL ++ + C + Y+R + + + K E ++ S Y ++
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC---------SKYTDLL 568
Query: 388 QHLCHNGQTGKAEIFFRQLMK 408
+ E +Q+ +
Sbjct: 569 RIALMAEDEAIFEEAHKQVQR 589
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 33/253 (13%), Positives = 60/253 (23%), Gaps = 43/253 (16%)
Query: 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
+ +K + E V + + Y+A + L P
Sbjct: 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS----APELQAVRMF 71
Query: 273 LPGLCDAGKMVEVQKVLREMVERYIPPKD---------------------------NSVF 305
L + + L + R + + +S+
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 306 MKLLGVQC--KSGHLNAAADVLKAMIRLSI-PTEAGHYGILIENFCKAEMYDRAIKLLDK 362
+ VQ K L+ A LK M T + E A + +
Sbjct: 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 363 LVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422
+ +K + N G+ AE ++ + K P NL+
Sbjct: 192 MADKC----SPT-----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242
Query: 423 GHSKEGNPDSAFE 435
G P
Sbjct: 243 LSQHLGKPPEVTN 255
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 37/307 (12%), Positives = 73/307 (23%), Gaps = 34/307 (11%)
Query: 176 KLETAIRFFEDMKSRGISL---DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-V 231
++ + + L VV + G + + + + + P V
Sbjct: 155 TVQALLPVLC----QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQV 208
Query: 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLR 290
++ + G A+E L + ++ + P V + G + + VL
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266
Query: 291 EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350
+ + P+ G + + VL L+ P +
Sbjct: 267 QAHG--LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGKQAL 323
Query: 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410
E R + +L + L PQ + + Q
Sbjct: 324 ETVQRLLPVLCQAHG----LTPQQ-----VVAIASHDGGKQALETVQRLLPVLCQAHG-- 372
Query: 411 VLDP---VAFNNLIRGHSKEGNPDSAFE-IVKIMGRRGVPRDADAYICLIESYLRKGEPA 466
L P VA + G + + G P A
Sbjct: 373 -LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASHDGGKQALETVQ 429
Query: 467 DAKTALD 473
L
Sbjct: 430 RLLPVLC 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 673 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.0 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.82 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.52 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.22 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.17 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.09 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.55 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.22 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.96 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.88 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.37 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.28 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.28 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.2 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.06 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.95 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.82 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.49 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.48 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.53 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.19 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.84 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.91 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.58 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.56 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.34 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.03 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.51 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.36 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.63 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.03 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.01 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.85 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.27 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.98 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.56 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.04 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.69 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.53 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.59 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.16 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.87 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=345.07 Aligned_cols=502 Identities=13% Similarity=0.030 Sum_probs=365.1
Q ss_pred cCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRF 183 (673)
Q Consensus 104 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 183 (673)
.|.+..+...+..+.. ++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++.+|...|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3444444444444332 4555666666666666666666666666653 234555666666666666666666666
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 184 FEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE---------------KNIEPTVISYTTMIKGYVAVERAD 248 (673)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~ll~~~~~~~~~~ 248 (673)
|+.+... +++..+++.++.+|.+.|++++|.++|+++.. .+.+++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 6665432 34566666666666666666666666653211 123445788889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH--H-HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHH
Q 005856 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQK--V-LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVL 325 (673)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 325 (673)
+|+++|++|.+.+ +.+...+..+...+...+..+.+.. + +..+...+... ...++..++..|.+.|++++|..+|
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF-LRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH-HHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH-HHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999888753 2344555555544433332222111 1 33333322222 3345556677888899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHH
Q 005856 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQ 405 (673)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (673)
+++.+. +++..++..++..|.+.|++++|+.+|+++.+.. + .+..++..++.++.+.|++++|..+++.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID----P-----YNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----c-----ccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 988765 5788899999999999999999999999997643 1 2566889999999999999999999999
Q ss_pred HHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 005856 406 LMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS 485 (673)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 485 (673)
+.+..+.+..+++.++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..
T Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 998888889999999999999999999999999998753 3468899999999999999999999999998753 45778
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-----HHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN-----FDS 556 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-----~~~ 556 (673)
++..++.+|.+.|++++|.++|+++.+..+. +..+|..++.+|.+.|++++|+++++++.+. +..|+ +..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 8999999999999999999999999987654 7888999999999999999999999998874 55676 345
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL 631 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (673)
++.++.+.|++++|..+++++++.++. +...|..++.+|.+.|++++|.+.++++++.. +.+...+..+..+|
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 788888999999999999999887643 67788899999999999999999999998864 33455555555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=342.98 Aligned_cols=503 Identities=12% Similarity=0.074 Sum_probs=365.2
Q ss_pred HhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHH
Q 005856 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146 (673)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 146 (673)
...|.+..+...+..++. ++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 344555555555544432 46777888888888888888888888888753 467777778888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCcCHHHHHHHHHHHHcCCC
Q 005856 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR---------------GISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~ 211 (673)
.+|+++.. .+++..+++.++.+|.+.|++++|..+|+++... +.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 88887754 2567778888888888888888888888743222 234467888888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 212 MDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR--I-FDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
+++|.++|+++.+.+. .+...+..+...+...+..+.+.. + +..+...+..+...+|..++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 8888888888887542 245556666555544433322221 1 44555444444555667777778888888888888
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
|+++.+. |++..++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++.+.+..
T Consensus 295 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 295 LSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 8887664 3478888888888888888888888888887765 4567778888888888888888888888886432
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005856 369 ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD 448 (673)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 448 (673)
+.+..++..++..|.+.|++++|..+|+++.+..+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+
T Consensus 370 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 440 (597)
T 2xpi_A 370 --------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGT 440 (597)
T ss_dssp --------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTC
T ss_pred --------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 23566788888888888888888888888888777788888888888888888888888888887763 346
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC--HHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN--LDLV 522 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~ 522 (673)
..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 7788888888888888888888888888653 346778888888888888888888888888776 55666 6788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
..++.+|.+.|++++|++.++++.+. .|+ +..++.+|...|++++|..+++++++.+|. +...+..++.+|
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~ 594 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 88888888888888888888888773 343 456777788888888888888888887654 455565666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-27 Score=233.86 Aligned_cols=325 Identities=14% Similarity=0.064 Sum_probs=148.1
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 206 YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEV 285 (673)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 285 (673)
+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+..++...|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444444331 1122333334444444444444444444443321 23344444444444444444444
Q ss_pred HHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 286 QKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
...|++++.. .|++..++..++.++.+.|++++|...|+++.+.. |.+...+..+...+...|++++|+..|+++++
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444442 33344444444444444455555554444444432 22233333444444444555555555544433
Q ss_pred chhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005856 366 KEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 445 (673)
.. + .+..+|..+...+...|++++|...|+++.+..|.+...+..+...+...|++++|...++++....
T Consensus 164 ~~----p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 164 TQ----P-----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HC----T-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred hC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 21 1 1233444444445555555555555555555444445555555555555555555555555544432
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 446 PRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI 525 (673)
Q Consensus 446 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 525 (673)
+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..+. +...+..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHH
Confidence 1134445555555555555555555555554422 112334444444555555555555555555544322 44444444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..+...|++++|++.++++.+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555544444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-27 Score=234.86 Aligned_cols=380 Identities=15% Similarity=0.096 Sum_probs=238.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
...+.+.|++++|++.|+.+.+.. |.+..++..+..++...|++++|...++...+.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 445667778888888887777765 6667777777777777788888887777776654 3367777777777777788
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+++|...|+++.+.. +.+...|..+..++.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888887777777653 3345567777777777777777777777776653 22344555666667777777777777777
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005856 187 MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (673)
+.+.... +..+|..+..++...|++++|...|+++.+.+ +.+...|..+...+...|++++|+..|++..... +.+.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 7665322 45667777777777777777777777776643 2245566666666667777777777666665542 2345
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 267 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
.++..+...+...|++++|...++++++. .|.+..++..++..+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 56666666666666666666666666663 34455556666666666666666666666655542 3445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
+.+.|++++|+..++++++.. +.+..++..+...+.+.|++++|...|+++.+..|.++..+..+...+..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF---------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC---------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 555555555555555553211 11233444555555555555555555555554444444445444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=249.77 Aligned_cols=206 Identities=18% Similarity=0.246 Sum_probs=170.1
Q ss_pred HHHHHHHhhcccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC---------H
Q 005856 73 NHARCILLDMPKKGVQWDE-DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR---------Y 142 (673)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~ 142 (673)
..+..+.+.+.+.+....+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666666655444 45788889999999999999999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 005856 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (673)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (673)
+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 005856 223 KEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (673)
Q Consensus 223 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (673)
.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998888765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=243.69 Aligned_cols=205 Identities=19% Similarity=0.219 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHcCCccCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 005856 109 ESVKIFDIMKQLGVERSVK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK---------LE 178 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 178 (673)
.+..+.+.+.+.+....+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445555666655554443 4677778888888888888888888888888888888888888776543 56
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc
Q 005856 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK 314 (673)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (673)
+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..| +..+++.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777 77777777766654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-23 Score=219.24 Aligned_cols=256 Identities=11% Similarity=0.007 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHHHH-----CCCC-------CCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 279 AGKMVEVQKVLREMVE-----RYIP-------PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 279 ~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
.|++++|...++++.. .... |.+..++..++..+...|+++.|...++.+.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 5666666666666655 2111 112344455555555555555555555555544311 4445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
+...|++++|+..++.+++.. +.+...+..+...+...|++++|...++++.+..+.+..++..+...+..
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHCCCHHHHHHHHHHHhhcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 555555555555555554321 11233444455555555555555555555555544444555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHhc---cC
Q 005856 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PA----SSLFRSVMESLFE---DG 498 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g 498 (673)
.|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 555555555555554431 123344455555555555555555555554432100 11 1144444445555 55
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
++++|...++++.+..+. +...+..++.++...|++++|...++++.+
T Consensus 430 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555544322 344444455555555555555555555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-23 Score=216.69 Aligned_cols=448 Identities=10% Similarity=0.003 Sum_probs=292.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHH
Q 005856 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (673)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (673)
..+...+..+.+.|++++|...|+++.+.+ |+..++..+..+|...|++++|...|+++.+.+ +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 455556666667777777777777766654 466666667777777777777777777766654 34556666677777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 005856 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216 (673)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 216 (673)
...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 777777777777777666542 2333333333333333222222222222221111111111110000000111111111
Q ss_pred HHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CCHHHHHH
Q 005856 217 KLFAEMKEKNI---------EPTVISYTTMIKGYVA---VERADDALRIFDEMKS-----FDVK--------PNAVTYTA 271 (673)
Q Consensus 217 ~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~ 271 (673)
.+...+..... +.+...+......+.. .|++++|+..|+++.+ .... .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111100 1124444444444444 7888888888888876 3111 23456777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 272 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
+...+...|++++|...++++... .|. ...+..++..+...|+++.|...++.+.... +.+...+..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 778888889999999999888875 454 7788888888889999999999998888764 456677888888899999
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (673)
++++|+..++++++.. + .+...+..+...+...|++++|...++.+.+..+.++.++..+...+...|+++
T Consensus 319 ~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD----P-----ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp CTTHHHHHHHHHHHTC----S-----SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhC----h-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999887643 1 244577888888899999999999999998888778888999999999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHH
Q 005856 432 SAFEIVKIMGRRGVP-RD----ADAYICLIESYLR---KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTA 503 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 503 (673)
+|...++.+.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 999999888763211 11 3478888899999 999999999999988753 34566778888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 005856 504 SRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~ 523 (673)
...|+++.+..+. +...+.
T Consensus 469 ~~~~~~a~~~~~~-~~~~~~ 487 (514)
T 2gw1_A 469 ITLFEESADLART-MEEKLQ 487 (514)
T ss_dssp HHHHHHHHHHCSS-HHHHHH
T ss_pred HHHHHHHHHhccc-cHHHHH
Confidence 9999999988654 334433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-21 Score=200.49 Aligned_cols=317 Identities=16% Similarity=0.162 Sum_probs=197.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLP 274 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 274 (673)
+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45566666666667777777777777666542 2355666666666666666666666666666543 334556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCcH---HhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 275 GLCDAGKMVEVQKVLREMVERYIPPKDN---SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
+|...|++++|...|+++... .|.+. ..+..+...+... .+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 666666666666666666553 33333 3444333332110 1223344567778
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (673)
++++|+..|+.+++.. +.+...+..+..+|...|++++|...|+++.+..+.++.++..++.+|...|+++
T Consensus 158 ~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC---------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888876543 1245567777777888888888888888877777777777888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICL------------IESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMESL 494 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 494 (673)
+|...++.+.... +.+...+..+ ...+...|++++|...++++.+.. |+ ...+..+...+
T Consensus 229 ~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 229 LSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHH
Confidence 8888887777642 2233444333 556666666666666666666532 33 23455556666
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.+.|++++|...++++.+..+. +...|..++.+|...|++++|+..++++.+ ..|+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 361 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEN 361 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS
T ss_pred HHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcc
Confidence 6666666666666666665332 456666666666666666666666666665 4454
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=212.65 Aligned_cols=434 Identities=11% Similarity=0.049 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYN 207 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 207 (673)
.+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.+.. +...+..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 34445555555555555555555555442 224555555555555555666666555555554322 4555555555555
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCC
Q 005856 208 RFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF------DVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~ 281 (673)
..|++++|...|+.+.. .|+ .....+..+...+....+...++.+... ...|+..... .+....+
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 175 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFD 175 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSC
T ss_pred HcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcC
Confidence 56666666665542211 111 1111222333334445555555555332 1123332222 2233334
Q ss_pred HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc--------cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 005856 282 MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK--------SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMY 353 (673)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 353 (673)
.+.+...+..... ..+........+...+.. .|+++.|..+++.+.+.. +.+...+..+
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~---------- 242 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENA---------- 242 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH----------
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHH----------
Confidence 4333333222111 111111122222222221 134556666666655542 1121111111
Q ss_pred HHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHH
Q 005856 354 DRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (673)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 433 (673)
..++..+...+...|+++.|...++.+.+..+. ..++..+...+...|++++|
T Consensus 243 --------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 243 --------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 112233333444445555555555555444433 44555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 434 FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 296 FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555432 2244555555555555666666666665555432 123345555555666666666666666666665
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHcc----------CChHHHHHHHH
Q 005856 514 GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEK----------GKTIAAVKLLD 575 (673)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~----------g~~~~A~~~~~ 575 (673)
.+. +...+..++.++...|++++|+..++++.+.. ..+. .......+... |++++|...++
T Consensus 374 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 FPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp CTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 433 34555566666666666666666666655421 1111 11233444555 77777777777
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++++..+. +...+..++.+|.+.|++++|.+.++++++..
T Consensus 453 ~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 453 KACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77776543 44556677777777777777777777777654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-21 Score=198.97 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDI 116 (673)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 116 (673)
..+...+..+...+ |.+...+..++..+.+.|++++|..+|+.+.+..+ .+..++..+..+|...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555555554 66777788888888888888888888888876543 3677888888888888888888888888
Q ss_pred HHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHH
Q 005856 117 MKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR---HTYNVM------------LWGFFLSLKLETAI 181 (673)
Q Consensus 117 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~ 181 (673)
+.+.+ +.+...+..+..+|.+.|++++|...|+++.+.++ .+. ..+..+ ...+...|++++|.
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87765 45577788888888888888888888888876532 223 444444 34477888888888
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (673)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (673)
..|+.+.+... .+..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++....
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888887643 367788888888888888888888888887653 3467788888888888888888888888887642
Q ss_pred CCCCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCc----HHhHHHHHHHHhccCChHHHHHHH
Q 005856 262 VKPNAVTYTAL------------LPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVL 325 (673)
Q Consensus 262 ~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 325 (673)
+.+...+..+ ...+...|++++|...|++++.. .|.+ ...+..++.++.+.|++++|...+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2334444443 67788889999999999888874 4434 336777888888899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
+.+.+.. +.+...+..+..+|...|++++|...|+++++.
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8887753 456788888888899999999999999988653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-22 Score=206.76 Aligned_cols=401 Identities=13% Similarity=0.076 Sum_probs=308.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 005856 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (673)
Q Consensus 25 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 104 (673)
.....+...|+++.|+..|+.+.+.+ |.++.++..++.++...|++++|.+.++++.+.++. +..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHc
Confidence 34558889999999999999999987 789999999999999999999999999999887644 788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHH--------------
Q 005856 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG------IEPTRHTY-------------- 164 (673)
Q Consensus 105 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~-------------- 164 (673)
|++++|...|+.+.. .|+ .....+..+...+....|...++++.... ..|+....
T Consensus 107 g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999974422 222 22333445555666678888888875431 11222211
Q ss_pred ----------------HHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHcCCChH
Q 005856 165 ----------------NVMLWGFF--------LSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMD 213 (673)
Q Consensus 165 ----------------~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~ 213 (673)
..+...+. ..|++++|..+++.+.+.... +. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 11111111 124788999999999876433 22 34666778888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 214 EAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMV 293 (673)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 293 (673)
+|...|+++... .|+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999986 4567889999999999999999999999998764 4567889999999999999999999999999
Q ss_pred HCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 294 ERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
.. .|.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..|+.+++.... .
T Consensus 338 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~ 411 (537)
T 3fp2_A 338 SL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV---Q 411 (537)
T ss_dssp HH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---C
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc---c
Confidence 85 46678899999999999999999999999998874 556778889999999999999999999999876521 1
Q ss_pred CCCCCchhhHHHHHHHHHcc----------CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 374 STLDMEASSYNPMIQHLCHN----------GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
.........+......+... |++++|...++++.+..+.++.++..+..+|...|++++|...|+.+.+.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11112222344445566666 88888888888888887778888888888888888888888888888774
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-17 Score=171.68 Aligned_cols=384 Identities=11% Similarity=0.108 Sum_probs=203.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGV--QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDA 131 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 131 (673)
.++.--...+++|...|.+.+|++++++++-.+- .-+...-+.++.+..+. +..+.....++... .+ ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHH
Confidence 4455555566666666666666666666653211 12334444455555444 44444444444432 11 233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 211 (673)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 5555666666666666666641 11111222222 4466666666665431 45566666666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005856 212 MDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLRE 291 (673)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 291 (673)
+++|.+.|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++....+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 66666666443 255566666666666666666666666555432 22222233556666666655433221
Q ss_pred HHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccC
Q 005856 292 MVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR 371 (673)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 371 (673)
. .+ +...+..+...+...|++++|...|..+ ..|..+...|.+.|+++.|++.++++
T Consensus 1191 --~---~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------- 1247 (1630)
T 1xi4_A 1191 --N---GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------- 1247 (1630)
T ss_pred --h---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--------
Confidence 1 12 3444555666666666666666666654 23666666666666666666666665
Q ss_pred CCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh
Q 005856 372 PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADA 451 (673)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 451 (673)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 23456666666666666666665544432 1244555566666666666666666665555432 223344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC------chhhHHHHHHHHhccCCHHHHH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDG-HSP------ASSLFRSVMESLFEDGRVQTAS 504 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~------~~~~~~~l~~~~~~~g~~~~a~ 504 (673)
|+.+...|++. .+++..+.++...+.+ +++ +...|..+...|.+.|+++.|.
T Consensus 1317 ftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1317 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 54455555442 2222222222222211 111 2345666666666666666655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-19 Score=176.46 Aligned_cols=328 Identities=14% Similarity=0.132 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 005856 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (673)
Q Consensus 266 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (673)
...+..+...+...|++++|...|++++.. .|.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 445666667777777777777777777764 45566777777777777777777777777776653 345566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHH
Q 005856 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (673)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (673)
.+...|++++|+..|+++++.. +.. ..+...+..+..... ...+..+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~----~~~--~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~ 131 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN----PSE--QEEKEAESQLVKADE----------------------MQRLRSQALDAF 131 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC----CCH--HHHHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC----Ccc--cChHHHHHHHHHHHH----------------------HHHHHHHHHHHH
Confidence 7777777777777777765322 000 012222222210000 001112234445
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHH
Q 005856 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (673)
Q Consensus 426 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (673)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 2244455555555555555555555555555421 2234444455555555555555555
Q ss_pred HHHHHHHcCCCCCHHHH------------HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHccC
Q 005856 506 VMKSMVEKGVKENLDLV------------AKILEALLMRGHVEEALGRIDLMMQSGSVPNF--------DSLLSVLSEKG 565 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~~~~~~g 565 (673)
.++++.+..+. +...+ ..++..+...|++++|+..++++.+ ..|+. ..++..+...|
T Consensus 210 ~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 210 EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHcc
Confidence 55555554332 22222 1235567777888888888877776 33331 12456666788
Q ss_pred ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL 631 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (673)
++++|...++++++..+. +...+..++.++...|++++|.+.++++++.. +.+...+..+..++
T Consensus 287 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 287 KPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 888888888888876543 46667778888888888888888888888754 23344444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-18 Score=171.91 Aligned_cols=334 Identities=11% Similarity=0.061 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566667777777788888888887777654 3456677777777777777777777777776653 235566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 170 GFFLSLKLETAIRFFEDMKSRGIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 247 (673)
.+...|++++|...++.+.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777765320 12333333311100 01122234555566666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHH
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (673)
++|+..++++.+.. +.+...+..+...+...|++++|...++++... .|.+..++..+...+...|++++|...++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666665542 334555666666666666666666666666653 344566666666666666666666666666
Q ss_pred HHhCCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCC
Q 005856 328 MIRLSIPTEAGHYG------------ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ 395 (673)
Q Consensus 328 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (673)
..+.. +.+...+. .+...+...|++++|+..++++++.. +. ........+..+..++...|+
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-chHHHHHHHHHHHHHHHHccC
Confidence 65542 22222221 22455666777777777777775543 11 000011224445566666777
Q ss_pred HhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+++|...++...+..+.++.++..+..++...|++++|...|+.+.+.. +.+...+..+..+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 7777777777766666666677777777777777777777777766643 1234444444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-16 Score=164.45 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=97.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
.+++++|.++.++.. +..+|..+..++...|++++|+..|.+. -|...|..++.++.+.|++++|.+.
T Consensus 1089 i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555555444331 2344445555555555555555554331 2344444455555555555555555
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
+....+.. + ++...+.++.+|.+.++++...... + .++...+..+...|...|++++|..+|..+
T Consensus 1157 L~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1157 LQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 54443321 1 2222223444444444444322221 1 223333444444555555555555555443
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005856 369 ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD 448 (673)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 448 (673)
..|..+..++.+.|+++.|.+.+++. .++.+|..+..+|...|++..|......+. .+
T Consensus 1222 ------------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~ 1279 (1630)
T 1xi4_A 1222 ------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 1279 (1630)
T ss_pred ------------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cC
Confidence 13444555555555555555554443 233445545555555555444444333211 23
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMI 476 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 476 (673)
+..+..++..|.+.|.+++|+.+++..+
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344444455555555555555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-18 Score=174.69 Aligned_cols=431 Identities=10% Similarity=0.064 Sum_probs=208.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 005856 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE 228 (673)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (673)
|++.++.. +-+...|..++. +...|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444432 336667777776 366788888888888887763 335677777888888888888888888887765 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHc---------CCCHHHHHHHHHHH
Q 005856 229 PTVISYTTMIKGY-VAVERADDALR----IFDEMKS-FDVKP-NAVTYTALLPGLCD---------AGKMVEVQKVLREM 292 (673)
Q Consensus 229 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 292 (673)
|+...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666666666433 34466555544 5555543 23333 34555555554433 45666777777766
Q ss_pred HHCCCCCCc--HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhcc
Q 005856 293 VERYIPPKD--NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (673)
Q Consensus 293 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (673)
+.. |.. ...|..........|. ..+ ..++. ...+++..|..++..........
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 662 211 1222222111100010 000 01110 12344566666665532111000
Q ss_pred CC-CCCCCCc--------hhhHHHHHHHHHcc----CCH----hHHHHHHHHHHHcCCCCHHhHHHHHHHHHh-------
Q 005856 371 RP-QSTLDME--------ASSYNPMIQHLCHN----GQT----GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK------- 426 (673)
Q Consensus 371 ~~-~~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 426 (673)
.. ...+.|+ ...|...+...... ++. ..+..+|+++....|.++..|..++..+..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 00 0011222 12344433322211 121 255566666666666666666666666654
Q ss_pred cCChh-------HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch--hhHHHHHHHHhcc
Q 005856 427 EGNPD-------SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS--SLFRSVMESLFED 497 (673)
Q Consensus 427 ~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 497 (673)
.|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+++++++. .|+. ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 56655 56666666654212224555666666666666666666666666553 2321 2455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~ 572 (673)
|++++|..+|+++.+..+. +...|...+.. +...|++++|..+|++.++ ..|+ +..++..+.+.|+.++|..
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 5555555555555554221 12222111111 1234455555555554444 1222 2223333334444444444
Q ss_pred HHHHHhcCCCCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 573 LLDFCLGRDCII---DLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 573 ~~~~~~~~~~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+|++++..++.+ ....|...+......|+.+.+.++..++.+
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444432211 112333333334444444444444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-17 Score=169.53 Aligned_cols=352 Identities=11% Similarity=0.003 Sum_probs=213.0
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCc
Q 005856 230 TVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKD 301 (673)
Q Consensus 230 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 301 (673)
+...+..+...|.. .+++++|+..|+...+.| +...+..+...|.. .++.++|...|++..+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 34444444444444 445555555555544432 33444444444444 455555555555554432 3
Q ss_pred HHhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHchhccCCC
Q 005856 302 NSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK----AEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 302 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
+..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------ 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------
Confidence 3444445555544 455555555555555433 33444445555544 455666666666654321
Q ss_pred CCCCCchhhHHHHHHHHHc----cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005856 374 STLDMEASSYNPMIQHLCH----NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 445 (673)
+...+..+...|.. .++.++|...|++..+.+ ++.++..+...|.. .+++++|..+|+...+.+
T Consensus 182 -----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 182 -----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred -----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 33455555555555 566666666666666553 44556666666664 667777777777776653
Q ss_pred CCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCC
Q 005856 446 PRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED-----GRVQTASRVMKSMVEKGVK 516 (673)
Q Consensus 446 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~ 516 (673)
+...+..+...|.. .+++++|...+++..+.| +...+..+...+... +++++|..+|++..+.+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 44555666666666 677777777777776543 334455555555555 78888888888877764
Q ss_pred CCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCCCCChHhH
Q 005856 517 ENLDLVAKILEALLMRG---HVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASY 589 (673)
Q Consensus 517 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 589 (673)
+...+..+...|...| ++++|++.+++..+.+....+..+...+.. .+++++|..+++++.+.+ ++..+
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence 4456666777776655 677888888887776433334556666666 678888888888888765 35666
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 005856 590 EKVLDALLA----AGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 590 ~~l~~~l~~----~g~~~~A~~~~~~~~~~~ 616 (673)
..++.+|.. .|++++|.+.++++.+.+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 778888887 788888888888888765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-17 Score=169.35 Aligned_cols=354 Identities=13% Similarity=0.055 Sum_probs=219.2
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 005856 195 DVVTYNTMINGYNR----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNA 266 (673)
Q Consensus 195 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 266 (673)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555443 34455555555555 555555555555555433 34
Q ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCChh
Q 005856 267 VTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAG 338 (673)
Q Consensus 267 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 338 (673)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 444445555544 455666666666555542 44455555555554 556666666666665542 445
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHc----cCCHhHHHHHHHHHHHcC
Q 005856 339 HYGILIENFCK----AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH----NGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 339 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 410 (673)
.+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 55555555555 566666666666664421 33345555555554 567777777777766653
Q ss_pred CCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCC
Q 005856 411 VLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-----GEPADAKTALDSMIEDGHS 481 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~ 481 (673)
++..+..+...|.. .+++++|..+|+...+.+ +...+..+...|... +++++|...+++..+.+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 44556666666666 677788888887777653 455666677777766 78888888888877754
Q ss_pred CchhhHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCH
Q 005856 482 PASSLFRSVMESLFEDG---RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 482 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
+...+..+...+...| ++++|..+|++..+.+ +...+..+...|.. .+++++|+..+++..+.+.....
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 3345555666665545 7788888888887764 56677778877777 77888888888888776532224
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHhcCCCC
Q 005856 555 DSLLSVLSE----KGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 555 ~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~ 583 (673)
..+...|.. .+++++|..+++++++.+++
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 556667766 78888888888888887643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-18 Score=169.30 Aligned_cols=291 Identities=14% Similarity=0.019 Sum_probs=224.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
+.+...+..+...+...|++++|+.+|+++++.. + .+...+..++.++...|++++|...++++.+..+.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----P-----FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C-----CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 4556667777777888888888888888887643 1 233456667777788888888888888888887778
Q ss_pred HHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005856 414 PVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVME 492 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 492 (673)
+.++..+...+...| ++++|...++.+.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 888888888888888 8888998888888754 3356778888888888899999999998888754 234556667788
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----C---CCC----HHHHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG----S---VPN----FDSLLSVL 561 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~p~----~~~~~~~~ 561 (673)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++.+.. . .|. +..++..+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 888899999999999998887554 67788888888999999999999988887621 0 022 45677788
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCcc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL-NQEGNTK 638 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 638 (673)
...|++++|...++++++..+. +...+..++.++.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8899999999999999887654 45667789999999999999999999988764 34666777788877 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-17 Score=170.32 Aligned_cols=424 Identities=10% Similarity=0.076 Sum_probs=211.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005856 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV 122 (673)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 122 (673)
|+.+++.+ |.+..+|..++.. .+.|++++|..+|+++++.. +.+...|...+..+.+.|++++|..+|+++.+..
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 34444444 5566666666663 55667777777777766653 2356666666666666777777777777766643
Q ss_pred ccCHhhHHHHHHHH-HHcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 005856 123 ERSVKSYDALFKLI-LRRGRYMMAKR----YFNKMLSE-GIEP-TRHTYNVMLWGFFL---------SLKLETAIRFFED 186 (673)
Q Consensus 123 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 186 (673)
|+...|...+... ...|+++.|.+ +|++.... |..| +...|...+..... .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 4555665555422 23455555443 55544332 3332 34455555544433 4666667777766
Q ss_pred HHhCCCCcCHHHHHHHHHHH-------------HcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 187 MKSRGISLDVVTYNTMINGY-------------NRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRI 253 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 253 (673)
..+.........|....... .+.+++..|..++..+...
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~---------------------------- 207 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV---------------------------- 207 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH----------------------------
Confidence 66531111112222221110 0112333333333331100
Q ss_pred HHHHHhC---CCCCC--------HHHHHHHHHHHHc----CCCH----HHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc
Q 005856 254 FDEMKSF---DVKPN--------AVTYTALLPGLCD----AGKM----VEVQKVLREMVERYIPPKDNSVFMKLLGVQCK 314 (673)
Q Consensus 254 ~~~~~~~---~~~~~--------~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (673)
....+. .++|+ ...|...+..... .++. ..+..+|++++.. .|.++..|..++..+.+
T Consensus 208 -~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 208 -MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQ 284 (530)
T ss_dssp -HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred -HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 000110 01222 1222222221111 1121 2445555555553 34455555555555543
Q ss_pred -------cCChH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCc-
Q 005856 315 -------SGHLN-------AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME- 379 (673)
Q Consensus 315 -------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 379 (673)
.|+++ .|..+|++..+.-.|.+...+..++..+.+.|++++|..+|+++++.. +. +
T Consensus 285 ~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~-----~~ 355 (530)
T 2ooe_A 285 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DI-----DP 355 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS----SS-----CH
T ss_pred hchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc----cc-----Cc
Confidence 45554 566666666542123345555555666666666666666666665421 10 1
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRG-HSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
...|...+..+.+.|+.+.|..+|++..+..+.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 13455555555556666666666666665543333333322222 224566666666666665532 2245666666666
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 459 YLRKGEPADAKTALDSMIEDG-HSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666542 1221 224555555555566666666666666654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-18 Score=165.18 Aligned_cols=298 Identities=10% Similarity=0.021 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005856 161 RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240 (673)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (673)
...+..+...+...|++++|..+++++.+.... +...+..++.++...|++++|...++++.+.. +.+...|..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334444455555555555555555555544221 33344444455555555555555555555432 2234455555555
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChH
Q 005856 241 YVAVE-RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (673)
Q Consensus 241 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (673)
+...| ++++|...|+++.... +.+...+..+...+...|++++|...++++... .|.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 55555 5566666665555432 223445555666666666666666666666553 2334555556666677777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHH
Q 005856 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (673)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (673)
.|...++++.+.. +.+...+..+...+...|++++|+..++++++................++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777766653 445666777777788888888888888887765422111112233456788888899999999999
Q ss_pred HHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCCh
Q 005856 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY-LRKGEP 465 (673)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 465 (673)
...+++..+..+.++.++..+..++...|++++|...++.+.+.. +.+...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 999999998888888889999999999999999999999888753 33677777777777 344544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=171.58 Aligned_cols=288 Identities=14% Similarity=0.091 Sum_probs=228.0
Q ss_pred HHhcCCHHHHHH-HHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHH
Q 005856 347 FCKAEMYDRAIK-LLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (673)
Q Consensus 347 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (673)
+...|++++|+. .+++.+... + .....+...+..+...+...|++++|...++++.+..+.++.++..++.++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~----~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE----E-ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp -----------CHHHHCCCCCC----S-SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcC----C-CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344578888888 777664321 1 1112245678889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-hhHHH---------------
Q 005856 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRS--------------- 489 (673)
Q Consensus 426 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~--------------- 489 (673)
..|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. |+. ..+..
T Consensus 110 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 110 ENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------C
T ss_pred HCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHH
Confidence 9999999999999998864 3478899999999999999999999999999854 332 22211
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHcc
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEK 564 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~ 564 (673)
.+..+...|++++|..+++++.+..+.. +...+..++.++...|++++|+..++++.+ ..|+ +..++..+...
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHc
Confidence 2333448899999999999999985543 578889999999999999999999999988 4454 45577888899
Q ss_pred CChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhc
Q 005856 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----------DWKSSDKLIAGLNQE 634 (673)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~ 634 (673)
|++++|+..++++++..+. +...+..++.+|.+.|++++|.+.+++++...... ....+..++.+|...
T Consensus 265 g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 9999999999999997643 56778899999999999999999999998743211 267888899999999
Q ss_pred CCcchHHHHHH
Q 005856 635 GNTKQADILSR 645 (673)
Q Consensus 635 g~~~~a~~~~~ 645 (673)
|+.++|..+.+
T Consensus 344 g~~~~A~~~~~ 354 (368)
T 1fch_A 344 GQSDAYGAADA 354 (368)
T ss_dssp TCGGGHHHHHT
T ss_pred CChHhHHHhHH
Confidence 99999987764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-18 Score=169.05 Aligned_cols=286 Identities=12% Similarity=-0.003 Sum_probs=193.3
Q ss_pred CChHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHH
Q 005856 316 GHLNAAAD-VLKAMIRLSI---PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC 391 (673)
Q Consensus 316 g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (673)
|+++.|.. .+++...... ..+...+..+...+...|++++|+..|+++++.. +.+..++..+..++.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------PKHMEAWQYLGTTQA 109 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHH
Confidence 45555555 5544333211 1123445556666666666666666666665432 123445666666666
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH---------------HH
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC---------------LI 456 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~ 456 (673)
..|++++|...++++.+..+.++.++..++.++...|++++|...++.+...... +...+.. .+
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTT
T ss_pred HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHH
Confidence 6667777777666666666666666777777777777777777777766654321 1111110 12
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
..+...|++++|...++++.+..... +..++..+...+...|++++|...++++.+..+. +...+..++.++...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCH
Confidence 33337888999999999988754221 4677888888889999999999999998887544 677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC----------ChHhHHHHHHHHHhcCC
Q 005856 536 EEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII----------DLASYEKVLDALLAAGK 601 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~g~ 601 (673)
++|+..++++.+ ..|+ +..++.++...|++++|...++++++..+.. ....|..++.+|...|+
T Consensus 268 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 268 EEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999998887 4455 4457778888999999999999888765443 26778899999999999
Q ss_pred hHHHHHHHHHHHH
Q 005856 602 TLNAYSILFKIME 614 (673)
Q Consensus 602 ~~~A~~~~~~~~~ 614 (673)
+++|..++++.++
T Consensus 346 ~~~A~~~~~~~l~ 358 (368)
T 1fch_A 346 SDAYGAADARDLS 358 (368)
T ss_dssp GGGHHHHHTTCHH
T ss_pred hHhHHHhHHHHHH
Confidence 9999999876543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-16 Score=161.90 Aligned_cols=384 Identities=11% Similarity=-0.015 Sum_probs=206.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEK--------NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF-----D 261 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~ 261 (673)
....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777777777777777777777765431 11123456677777777777777777777665431 0
Q ss_pred -C-CCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHH---hccCChHHHHHHHHHHHhCCCC
Q 005856 262 -V-KPNAVTYTALLPGLCD--AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ---CKSGHLNAAADVLKAMIRLSIP 334 (673)
Q Consensus 262 -~-~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~ 334 (673)
. .....++.....++.. .+++++|...|++.++. .|+++..+..+..++ ...++.+.|+..+++.++.+ +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 1123444444434333 34566666666666653 454555555544442 23345555666666555543 3
Q ss_pred CChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 335 TEAGHYGILIENFCKA----EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
.+...+..+...+... |++++|.+.++++.... +.+...+..+...+...|+++.|...+++..+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 3334444444444332 34455555555554332 1233445555555555666666666666555555
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
|.+..++..+..+|...+.... ... .... .......+.++.|...+++..+.. +.+...+..+
T Consensus 278 p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~~------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENGM------YGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhh---------hHH-HHHH------HHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 5555555555544432111000 000 0000 000111223567778888777643 3445677788
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCCh
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLD--LVAKILE-ALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKT 567 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~ 567 (673)
...+...|++++|...|+++++..+.+... .+..+.. .+...|++++|+..+++.++ +.|+.... .+..
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~------~~~~ 412 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK------EKMK 412 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH------HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH------HHHH
Confidence 888889999999999999988875543221 2222332 23467889999999998888 66664322 1223
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+..++++++..+|. +...|..++.+|...|++++|++.++++++.+
T Consensus 413 ~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456667777776644 56677889999999999999999999998854
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=164.41 Aligned_cols=261 Identities=14% Similarity=0.096 Sum_probs=217.3
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...+..+...+.+.|++++|...|+++.+..+.+..++..++.++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455688889999999999999999999999999999999999999999999999999999998864 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCch-h----------hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPAS-S----------LFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKIL 526 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 526 (673)
|...|++++|...++++.+.. |+. . .+..+...+...|++++|..+++++.+..+.. +...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998743 332 2 22334678899999999999999999985542 688899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 005856 527 EALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 602 (673)
.++...|++++|++.++++.+ ..|+ +..++.++...|++++|+..++++++..+. +...+..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 999999999999999999988 4455 456788888999999999999999998654 477788999999999999
Q ss_pred HHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCcchHHHHHH
Q 005856 603 LNAYSILFKIMEKGGV-----------TDWKSSDKLIAGLNQEGNTKQADILSR 645 (673)
Q Consensus 603 ~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (673)
++|++.++++++.... .....+..+..++...|+.+.+..+.+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999874311 125677889999999999998876653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-17 Score=161.73 Aligned_cols=261 Identities=11% Similarity=-0.021 Sum_probs=188.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHh
Q 005856 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416 (673)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (673)
...+..+...+.+.|++++|+..|+++++.. + .+..++..+..++...|++++|...|+++.+..+.+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 135 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD----P-----GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----c-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 3446666667777777777777777776543 1 245567777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cch
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD-----------ADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PAS 484 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 484 (673)
+..++.+|...|++++|...++.+.+.. |+ ...+..+...+...|++++|...++++.+.... ++.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 8888888888888888888887776632 22 222334577788888888888888888875421 156
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSV 560 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~ 560 (673)
.++..+...+...|++++|...++++.+..+. +...|..++.+|...|++++|+..++++.+ ..|+ +..++.+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHH
Confidence 77888888888888889998888888887554 677888888888888999999988888887 4455 4457777
Q ss_pred HHccCChHHHHHHHHHHhcCCCCC-----------ChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCII-----------DLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
+...|++++|...++++++..+.. ....|..++.++...|+.+.|.+..++
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888899999999998888764331 256788999999999999999888766
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=157.59 Aligned_cols=290 Identities=13% Similarity=0.126 Sum_probs=135.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
..+...|+.++|.++++.+ +.+.+|..++.++.+.|++++|++.|.+. +|...|..++.++...|++
T Consensus 11 ~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 3556778899999999988 22359999999999999999999999653 4777999999999999999
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (673)
++|...++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988877763 4667889999999999999999988774 367779999999999999999999999977
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (673)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (673)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ ..++.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHh
Confidence 478999999999999999999999882 7899999999999999999996655432 23444
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhcc--CChHHHHHHHHHHHhCCCCC------Chhh
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS--GHLNAAADVLKAMIRLSIPT------EAGH 339 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~ 339 (673)
....++..|.+.|.++++..+++..+.. ++.....|+.+.-.|++- ++..+.++.|..- .++++ +...
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 4557888999999999999999998764 455778888887777764 3444444444322 12233 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
|..++..|.+.++++.|....-.-
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhhchHHHHHHHHHhC
Confidence 888888888888888887755443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-15 Score=156.44 Aligned_cols=348 Identities=12% Similarity=0.014 Sum_probs=235.0
Q ss_pred HHhHHHHHHHHhccCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRL--------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
...|+.+...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...++++++........
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345566666666666666666666655431 113345667888888889999999998888887644221111
Q ss_pred CCCCCchhhHHHHHHHHHc--cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCC
Q 005856 374 STLDMEASSYNPMIQHLCH--NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH---SKEGNPDSAFEIVKIMGRRGVPRD 448 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~ 448 (673)
.......++.....++.. .+++++|...|++..+..|.++..+..+..++ ...++.++|++.+++..+.+ +.+
T Consensus 131 -~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 -YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp -SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred -cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 111223455555555544 45799999999999999888888887777664 44678889999999888753 235
Q ss_pred HHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005856 449 ADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (673)
Q Consensus 449 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (673)
...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 6666666655544 467789999999988753 345677888899999999999999999999998665 6777777
Q ss_pred HHHHHHcC-------------------CCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 525 ILEALLMR-------------------GHVEEALGRIDLMMQS-GSV-PNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 525 l~~~~~~~-------------------g~~~~A~~~~~~~~~~-~~~-p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
++.+|... +.+++|+..+++..+. +.. ..+..++..+...|++++|+..|+++++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 77666432 2357788888887772 222 22667888999999999999999999998665
Q ss_pred CCh--HhHHHHHHH-HHhcCChHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHhcCCc
Q 005856 584 IDL--ASYEKVLDA-LLAAGKTLNAYSILFKIMEKG-----------------------GVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 584 ~~~--~~~~~l~~~-l~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~ 637 (673)
+.. ..+..++.. +...|++++|++.++++++-. .+.++.++..++.+|...|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 432 233445543 457899999999999887642 234566788899999999999
Q ss_pred chHHHHHHHHHhhhcc
Q 005856 638 KQADILSRMIRGEMSR 653 (673)
Q Consensus 638 ~~a~~~~~~~~~~~~~ 653 (673)
++|....++..+.++.
T Consensus 447 ~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 447 QQADEDSERGLESGSL 462 (472)
T ss_dssp C---------------
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9998877776655533
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=155.08 Aligned_cols=260 Identities=10% Similarity=0.025 Sum_probs=219.2
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...+......+...|++++|..+++++.+..+.+..++..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445677888899999999999999999999988899999999999999999999999999998863 3478899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPA-SSLFRSV--------------ME-SLFEDGRVQTASRVMKSMVEKGVKENLDLV 522 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 522 (673)
+...|++++|...++++.+.. |+ ...+..+ .. .+...|++++|..+++++.+..+. +...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999999753 33 2333332 22 377889999999999999998655 78889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 598 (673)
..++..+...|++++|++.++++.+ ..|+ +..++..+...|++++|...++++++..+. +...+..++.++..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999988 3454 455778888999999999999999997654 56678899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCcchHHHHHH
Q 005856 599 AGKTLNAYSILFKIMEKGGVT-----------DWKSSDKLIAGLNQEGNTKQADILSR 645 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (673)
.|++++|.+.+++++...... ....+..+..++...|+.++|..+.+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999998854321 46677889999999999999977654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-17 Score=156.00 Aligned_cols=400 Identities=13% Similarity=0.088 Sum_probs=145.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 217 (673)
+.|+.++|.++++++ +++.+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 456667777776666 22236667777777777777777776442 355566666666666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005856 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (673)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 297 (673)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66555542 2345566666677777777666665553 355556666666666666666666666644
Q ss_pred CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCC
Q 005856 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD 377 (673)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 377 (673)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ .
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-------------~ 204 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------------V 204 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-------------T
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-------------H
Confidence 24666666666666666666666665 24556666666666666666663333221 1
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCC------CHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-RGVPR------DAD 450 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~ 450 (673)
..+.....++..|.+.|.+++|..+++......+.....|+.+.-+|++- ++++..+.++.... .+++| +..
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12222334556666666666666666666655555555666665555553 23333333333322 12222 234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
.|..+.-.|...++++.|.. .|.++ +|+...-..+.+...+.. +.+.|...+..|.
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~-------------------n~elyYkai~fyl 339 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVA-------------------NVELYYRAIQFYL 339 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCS-------------------STHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchh-------------------HHHHHHHHHHHHH
Confidence 45555555555555555543 22221 122111111122222222 3444444444444
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
+....++.-+-..+. .+-|....+..+.+.|.+.-+..+++.....+ ...+-..+-+.|..-.+++. ++
T Consensus 340 --~~~p~~l~~ll~~l~--~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~----lr 408 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLS--PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA----LR 408 (449)
T ss_dssp --HHCGGGHHHHHHHHG--GGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH----HH
T ss_pred --hcCHHHHHHHHHHHH--hccCcHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHH----HH
Confidence 111222222222222 22334445555566777777777776444432 34445566777788888876 45
Q ss_pred HHHHcCCCCCHHH
Q 005856 611 KIMEKGGVTDWKS 623 (673)
Q Consensus 611 ~~~~~~~~~~~~~ 623 (673)
..++.-+..|...
T Consensus 409 ~si~~~~nfd~~~ 421 (449)
T 1b89_A 409 TSIDAYDNFDNIS 421 (449)
T ss_dssp HHHHHCCCSCHHH
T ss_pred HHHHHhcCcCHHH
Confidence 5555444455544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-17 Score=156.22 Aligned_cols=262 Identities=13% Similarity=0.030 Sum_probs=181.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHH
Q 005856 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (673)
.+..+...+...|++++|+.+|+++++.. + .+...+..+..++...|++++|...++++.+..+.+..++.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----P-----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH
Confidence 34445555666666666666666665432 1 13445555666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCc
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICL--------------IE-SYLRKGEPADAKTALDSMIEDGHSPA 483 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~ 483 (673)
.+...+...|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++.+.. +.+
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 6777777777777777777666654211 22222222 22 3667788888888888887653 335
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLS 559 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 559 (673)
...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|+..++++.+ ..|+ +..++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHH
Confidence 677778888888888888888888888887544 677788888888888999999988888877 3444 345677
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCC-----------ChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCII-----------DLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+...|++++|...++++++..+.. ....+..++.++.+.|++++|.+++++.++
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7778899999999998888776542 466778899999999999999999876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-16 Score=147.18 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
..++..+...+...++.+.|...++++...+ |.++..+..+..++...|++++|.+.++. +.+...+..++.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHH
Confidence 3344444444444444444444444444332 33444444444444444555554444443 234444444444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhH---HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLF---RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
.+.+.|++++|...++++.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...++.++.++.+.|+
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCC
Confidence 4445555555555554444432 222111 1111222233445555555555544422 244444444455555555
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH-HHHHHHHHhcCC
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA-AVKLLDFCLGRD 581 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~-A~~~~~~~~~~~ 581 (673)
+++|.+.++++++ ..|+ +..++..+...|+..+ +..+++++++.+
T Consensus 216 ~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 216 WEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5555555554444 2232 2223333444444433 334444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=145.99 Aligned_cols=249 Identities=12% Similarity=0.132 Sum_probs=150.7
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 207 NRFKKMDEAEKLFAEMKEKNIEPTV--ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE 284 (673)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 284 (673)
...|++..|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3456666666665554332 1221 2334455666666666666654433 1 24455566666666666666667
Q ss_pred HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (673)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (673)
|.+.+++++..+..|++...+..+..++...|++++|+..+++ +.+...+..++..|.+.|++++|.+.|++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7766666666554555666666666666677777777766665 3455666666666777777777777777765
Q ss_pred HchhccCCCCCCCCchh---hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 005856 365 EKEIILRPQSTLDMEAS---SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441 (673)
Q Consensus 365 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 441 (673)
+.. |+.. .....+..+...|++++|..+|+++.+..|.++..++.+..++...|++++|...++++.
T Consensus 158 ~~~----------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 158 DQD----------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHC----------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhC----------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 2211 111122333345677777777777777666677777777777777777777777777766
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 005856 442 RRGVPRDADAYICLIESYLRKGEPAD-AKTALDSMIED 478 (673)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~ 478 (673)
... +-++.++..++..+...|+.++ +.++++++.+.
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 643 2356667777777777777654 45666666653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=150.68 Aligned_cols=345 Identities=10% Similarity=0.072 Sum_probs=153.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 005856 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA---DDALRIFDEMKSFDVKPNAVTYTALLPGLCDA 279 (673)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 279 (673)
...+.+.|++++|.+.|++..+.| +...+..+...|...|+. ++|...|++..+. ++..+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 344445566666666666655543 233333444444445555 5666666655532 333344444433333
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 280 G-----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL---NAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 280 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
+ ++++|...|++..+.+ +...+..+...|...+.. ..+...+......| ++.....+...|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 3 5566666666666543 223455555555544332 22333333333322 2334445555555555
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC---CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc-
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG---QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE- 427 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 427 (673)
.++.+........+.. .. .++..+..+...|...| +.++|...|++..+.++++...+..+..+|...
T Consensus 156 ~~~~~~~~a~~~~~~a----~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 156 TYDQHLDDVERICKAA----LN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp CGGGGHHHHHHHHHHH----TT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred CcccCHHHHHHHHHHH----Hc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4444333322222111 11 12225555555565566 666666666666666666665555555555443
Q ss_pred ---CChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC---
Q 005856 428 ---GNPDSAFEIVKIMGRRGVPRDADAYICLIES-Y--LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG--- 498 (673)
Q Consensus 428 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 498 (673)
+++++|..+|+... . -++..+..+... + ...+++++|...|++..+.| +......+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 46666666666655 2 233444444444 2 23555666666666655543 3333344444443 33
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChH
Q 005856 499 --RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTI 568 (673)
Q Consensus 499 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~ 568 (673)
++++|..+|++.. . -+...+..+...|.. ..++++|+..+++..+.|.......+...|.. ..+..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHH
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHH
Confidence 5566666655554 2 134444445544443 22555555555555554433333344444432 23555
Q ss_pred HHHHHHHHHhcCC
Q 005856 569 AAVKLLDFCLGRD 581 (673)
Q Consensus 569 ~A~~~~~~~~~~~ 581 (673)
+|..+++++.+.+
T Consensus 376 ~A~~~~~~A~~~g 388 (452)
T 3e4b_A 376 NAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC
Confidence 5555555555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-15 Score=131.76 Aligned_cols=188 Identities=16% Similarity=0.110 Sum_probs=83.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...+..+...+.+.|++++|...+++.++.. +.+...+..+...+...|++++|+..++++++.++. +...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3344444444444444444444444444321 122333444444444444444444444444444332 34444444444
Q ss_pred HHcC-----------CCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 529 LLMR-----------GHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 529 ~~~~-----------g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+... |++++|+..+++.++ ..|+ +..++.++...|++++|+..++++++.+ .++..+..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 4444 555555555555554 3333 2234444445555555555555555544 3444445555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 005856 594 DALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADIL 643 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (673)
.+|...|++++|++.++++++.. +.+...+..++.++...|++++|...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555555555555555442 22344444455555555555555433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-17 Score=166.96 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005856 162 HTYNVMLWGFFLSLKLETAIRFFEDMKS---RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMI 238 (673)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 238 (673)
.||+++|.+|++.|++++|..+|+.|.+ .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3455555555555555555555544332 2444555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 239 KGYVAVER-ADDALRIFDEMKSFDVKPNAVTYTALLP 274 (673)
Q Consensus 239 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 274 (673)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555544 2444555555555555555555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-13 Score=128.52 Aligned_cols=222 Identities=9% Similarity=-0.050 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLI 456 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 456 (673)
.++..+...+...|++++|...|++..+ +.++.++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444455555555555555555555554 2333445555555555 555555555555555443 444555555
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 457 ESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 457 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
..|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555 555555555555555432 33444444444444 555555555555555543 33344444444
Q ss_pred HHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh--
Q 005856 529 LLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-- 598 (673)
Q Consensus 529 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 598 (673)
|.. .+++++|+..+++..+.+.......+...+.. .+++++|..+++++++.++ ...+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 444 45555555555554443221122334444444 4555555555555554432 3333444555554
Q ss_pred --cCChHHHHHHHHHHHHcC
Q 005856 599 --AGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 599 --~g~~~~A~~~~~~~~~~~ 616 (673)
.|++++|++.++++.+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 455555555555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-13 Score=129.20 Aligned_cols=229 Identities=12% Similarity=-0.050 Sum_probs=197.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhh
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSL 486 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 486 (673)
+.++.++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|...+++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 346778889999999999999999999999884 366788889999999 999999999999999865 6678
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005856 487 FRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLL 558 (673)
Q Consensus 487 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 558 (673)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .|++++|++.+++..+.+.......+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888888988 999999999999999985 67888889999999 999999999999999866322245677
Q ss_pred HHHHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 559 SVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAG 630 (673)
Q Consensus 559 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (673)
..+.. .+++++|..+++++++.+ +...+..++.+|.. .|++++|++.++++.+.+. ...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 77777 899999999999999875 45677789999999 9999999999999998853 6677789999
Q ss_pred HHh----cCCcchHHHHHHHHHhhhccc
Q 005856 631 LNQ----EGNTKQADILSRMIRGEMSRG 654 (673)
Q Consensus 631 ~~~----~g~~~~a~~~~~~~~~~~~~~ 654 (673)
|.. .++.++|....+...+.++..
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999 999999988888777777554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-14 Score=134.00 Aligned_cols=244 Identities=11% Similarity=0.055 Sum_probs=168.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIESY 459 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 459 (673)
.+......+...|++++|...++++.+..+.++.++..+..++...|++++|...++.+.+....+ ....|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 455566777788888888888888888777777788888888888888888888888887732111 233477788888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++..+. +...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887643 234567777778888888888888888888776443 5666666763444455888888
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHccCC---hHHHHHHHHHHhcCC---CCCC----hHhHHHHHHHHHhcCChHHH
Q 005856 540 GRIDLMMQSGSVPN----FDSLLSVLSEKGK---TIAAVKLLDFCLGRD---CIID----LASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~l~~~g~~~~A 605 (673)
+.++++.+ ..|+ +..++.++...|+ +++|...++++++.. +.++ ...|..++..|...|++++|
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888777 4455 2234555555566 777888877777652 2111 14566778888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 606 YSILFKIMEKGGVTDWKSSDKLIAG 630 (673)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (673)
.+.++++++.. +.+......+...
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 88888887754 2344444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=135.43 Aligned_cols=221 Identities=11% Similarity=0.081 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HHhHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRD----ADAYIC 454 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 454 (673)
..+..+...+...|++++|...|+++.+.. .++.++..+..++...|++++|...++.+.+... .++ ..++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 456667777778888888888888887777 7777788888888888888888888877765321 111 467777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
+...+...|++++|...++++.+.. |+. ..+...|++++|...++++....+. +...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 7778888888888888888877643 442 2355567777888888777776433 45566677777777788
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
+++|+..++++.+ ..|+ +..++..+...|++++|...++++++..+. +...|..++.++.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888877777776 3333 344666666777777777777777776543 35556677777777777777777777
Q ss_pred HHHHc
Q 005856 611 KIMEK 615 (673)
Q Consensus 611 ~~~~~ 615 (673)
++++.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=129.98 Aligned_cols=198 Identities=20% Similarity=0.177 Sum_probs=94.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCH
Q 005856 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP 414 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (673)
++...+..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|...+++..+..|.++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN---------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 344444445555555555555555555554322 11334444555555555555555555555555555555
Q ss_pred HhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 005856 415 VAFNNLIRGHSKE-----------GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (673)
Q Consensus 415 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 483 (673)
..+..+..++... |++++|...++...+.. +.+...+..+..++...|++++|+..+++.++.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 5555555555555 55555555555555432 1134455555555555555555555555555443 34
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (673)
...+..+...+...|++++|...|+++++..+. +...+..+..++...|++++|+..+++.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444555555555555555555555555554433 4444455555555555555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-11 Score=127.06 Aligned_cols=450 Identities=12% Similarity=0.098 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC---hHHHHHH
Q 005856 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK---MDEAEKL 218 (673)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~ 218 (673)
..+.+..|++.+..+ +-|..+|..++..+...+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344454555555543 458889999999888888999999999998877 45567788888888888888 9999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHc--------
Q 005856 219 FAEMKEKN-IEPTVISYTTMIKGYVAVERA--------DDALRIFDEMKS-FDV-KP-NAVTYTALLPGLCD-------- 278 (673)
Q Consensus 219 ~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~-------- 278 (673)
|++..... .+|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99988753 137888888877766655543 334467766553 454 44 34566666654432
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCc-HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 005856 279 -AGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRA 356 (673)
Q Consensus 279 -~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 356 (673)
.++.+.+..+|+.++.. +..+ ..+|......-...+. ..+..++.+ ...+++.|
T Consensus 206 eq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~A 261 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHH
Confidence 23456677788777752 2211 1222222111110000 001111111 01123334
Q ss_pred HHHHHHHHHchhccC---CC-------CCCCC-------chhhHHHHHHHHHccC-------CHhHHHHHHHHHHHcCCC
Q 005856 357 IKLLDKLVEKEIILR---PQ-------STLDM-------EASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGVL 412 (673)
Q Consensus 357 ~~~~~~~~~~~~~~~---~~-------~~~~~-------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~ 412 (673)
...+..+........ +. ..+++ ....|...+..--..+ ..+.+..+|++++...+.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 444443322110000 00 00010 1134555554433322 134466789999998888
Q ss_pred CHHhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAF-EIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG---------HSP 482 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~ 482 (673)
.+..|...+..+...|+.++|. .+|+..... .+.+...|..++....+.|+++.|..+|+++++.. ..|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999999997 999999874 45577778888999999999999999999998631 013
Q ss_pred c------------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhC-
Q 005856 483 A------------SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQS- 548 (673)
Q Consensus 483 ~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~- 548 (673)
+ ..+|...+....+.|+.+.|..+|.++.+.........|...+..-.+.+ +++.|.++|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 1 23677777777888999999999999988722223445544444444544 589999999988873
Q ss_pred CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005856 549 GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (673)
Q Consensus 549 ~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 618 (673)
+..|. +..++......|+.+.|..+|++++...+.+ ....|...+.--.+.|+.+.+.++.+++.+..+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 22233 2345666667899999999999999986532 2455666666667899999999999999987543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-14 Score=144.46 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=128.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 005856 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKL---NHARCILLDMPKKGVQWDEDMFEVLIES 100 (673)
Q Consensus 24 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~ 100 (673)
..+...+.+.|++++|++.|+.+.+.+ ++.++..+..++...|++ ++|..+|+...+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 445667777888888888888887654 334455566666667777 7888888777653 44455555554
Q ss_pred HHhcC-----CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005856 101 YGKKG-----IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMM---AKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (673)
Q Consensus 101 ~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (673)
+...+ ++++|..+|++..+.|. ...+..|...|...+.... +...+......| +...+..+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 44443 66778888887777542 2356666666665544332 333333333322 2233444455555
Q ss_pred hcCCHH----HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 005856 173 LSLKLE----TAIRFFEDMKSRGISLDVVTYNTMINGYNRFK---KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAV- 244 (673)
Q Consensus 173 ~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 244 (673)
..+.++ .+..++...... +...+..+..+|...| +.++|.+.|+...+.|. ++...+..+...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCC
Confidence 544333 233333332222 2225555555555555 55666666666555542 2333334444444333
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC--
Q 005856 245 ---ERADDALRIFDEMKSFDVKPNAVTYTALLPG-L--CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG-- 316 (673)
Q Consensus 245 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 316 (673)
+++++|+.+|++.. . -+...+..+... + ...+++++|...|++..+.+ +......+..+|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCC
Confidence 45555655555554 2 233333333333 2 23455555555555555433 3444444444444 23
Q ss_pred ---ChHHHHHHHHHHH
Q 005856 317 ---HLNAAADVLKAMI 329 (673)
Q Consensus 317 ---~~~~a~~~~~~~~ 329 (673)
+.++|...|++..
T Consensus 299 ~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV 314 (452)
T ss_dssp SCCCHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-14 Score=136.18 Aligned_cols=245 Identities=9% Similarity=0.016 Sum_probs=200.9
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
...|..+...+...|++++|+..+++++...|.+..+|+.+..++...|+ +++|+..++++...+. -+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 34677778888899999999999999999999999999999999999996 9999999999998643 378899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM-RGHVEE 537 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 537 (673)
+...|++++|+..++++++.. +-+...|..+..++...|++++|+..++++++.++. +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999854 346778889999999999999999999999999776 78899999999998 666577
Q ss_pred H-----HHHHHHHHhCCCCCC----HHHHHHHHHccC--ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC------
Q 005856 538 A-----LGRIDLMMQSGSVPN----FDSLLSVLSEKG--KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG------ 600 (673)
Q Consensus 538 A-----~~~~~~~~~~~~~p~----~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g------ 600 (673)
| ++.+++.+. ..|+ +..+..++...| ++++|++.++++ +.++ .+...+..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 7 588888888 6676 345666777777 689999999877 4443 25677789999999875
Q ss_pred ---ChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 005856 601 ---KTLNAYSILFKI-MEKGGVTDWKSSDKLIAGLN 632 (673)
Q Consensus 601 ---~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 632 (673)
.+++|+++|+++ .+. ++.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~-DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK-DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHH
Confidence 258999999998 443 3334455555555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-16 Score=161.06 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 93 MFEVLIESYGKKGIVQESVKIFDIMKQ---LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+|+++|.+|++.|++++|..+|++|.+ .|+.||+.+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 445555555555555555555544432 24445555555555555555555555555555555555555555555555
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005856 170 GFFLSLK-LETAIRFFEDMKSRGISLDVVTYNTMIN 204 (673)
Q Consensus 170 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (673)
++++.|+ .+.|.++|++|.+.|+.||..+|+.++.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 5554444 2444455555555555555555544443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-14 Score=129.64 Aligned_cols=225 Identities=12% Similarity=0.018 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc--C----HhhH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVER--S----VKSY 129 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~ 129 (673)
...+..++..+...|++++|...|+.+.+.. .+..++..+..+|...|++++|...++++.+..... + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566667777777777777777777776665 466677777777777777777777777776542111 1 4566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005856 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209 (673)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 209 (673)
..+...+...|++++|...|++.... .|+. ..+...|++++|...++.+..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 67777777777777777777777664 2332 234445666777777777666522 2455566666667777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289 (673)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 289 (673)
|++++|...|++..... +.+...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777766543 2245666666666667777777777776666542 334556666666666666666666666
Q ss_pred HHHHH
Q 005856 290 REMVE 294 (673)
Q Consensus 290 ~~~~~ 294 (673)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-13 Score=127.27 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=140.4
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhh
Q 005856 303 SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382 (673)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (673)
..+......+...|+++.|+..|+++.+.. +.+...+..+...|...|++++|+..++++++. + .........
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~-~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----V-NATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----S-CTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----c-CchhHHHHH
Confidence 344555566666666777777776666653 334445666666677777777777777776541 1 111112233
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
|..+...+...|++++|...+++..+..+.++.++..+..+|...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 56666667777777777777777776666666677777777777777777777777666542 23455555555233333
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHcC
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKG-VKEN------LDLVAKILEALLMR 532 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 532 (673)
+++++|...++++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 46777777777666532 2224445555555555555 556666666665541 1111 13455566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH
Q 005856 533 GHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
|++++|++.++++.+ ..|+.
T Consensus 235 ~~~~~A~~~~~~al~--~~p~~ 254 (272)
T 3u4t_A 235 RDKVKADAAWKNILA--LDPTN 254 (272)
T ss_dssp TCHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHh--cCccH
Confidence 666666666666665 44543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-14 Score=132.89 Aligned_cols=130 Identities=19% Similarity=0.053 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
.++..+...+...|++++|...|+++.+..+.++.++..++.++...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555432 123445555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
..|++++|...++++.+.. |+.......+..+...|++++|...+++....
T Consensus 123 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555555555555555422 33222222223333444555555555444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-14 Score=131.50 Aligned_cols=247 Identities=12% Similarity=-0.040 Sum_probs=169.0
Q ss_pred hccCChHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHH
Q 005856 313 CKSGHLNAAADVLKAMIRLSI---PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQH 389 (673)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (673)
...|++++|+..++++.+... +.+..++..+...+...|++++|+..|+++++.. + .+...+..+...
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~-----~~~~~~~~la~~ 86 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----P-----DMPEVFNYLGIY 86 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----C-----CCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----C-----CcHHHHHHHHHH
Confidence 345667777777777776531 1234566677777888888888888888876643 1 245677778888
Q ss_pred HHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 005856 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 469 (673)
+...|++++|...++++.+..+.++.++..+..+|...|++++|...++.+.+.. |+.......+..+...|++++|.
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHH
Confidence 8888888888888888888877778888889999999999999999998888743 33333444445556778999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 470 TALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE---NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
..+++..... +++... ..++..+...++.++|...++++.+..+.. +...+..++.++...|++++|+..++++.
T Consensus 165 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 165 EVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998877643 233333 346666777888888888888876542211 13556667777777777777777777776
Q ss_pred hCCCCCC-HHHHHHHHHccCChHHHHHHH
Q 005856 547 QSGSVPN-FDSLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 547 ~~~~~p~-~~~~~~~~~~~g~~~~A~~~~ 574 (673)
+ ..|+ +.....++...|++++|++.+
T Consensus 243 ~--~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 A--NNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--TCCTTCHHHHHHHHHHHHHHHC----
T ss_pred h--CCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 6 3453 444455555666666665554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-11 Score=124.76 Aligned_cols=453 Identities=9% Similarity=0.061 Sum_probs=258.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC---HHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI---VQESV 111 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~ 111 (673)
...+.+..|+..+..+ |.+...|..++..+.+.+.++.+..+|+.++.. ++.....|...+..-.+.++ ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3445566677777776 789999999999998889999999999998876 45578888888888888888 99999
Q ss_pred HHHHHHHHcC-CccCHhhHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHH-------
Q 005856 112 KIFDIMKQLG-VERSVKSYDALFKLILRRGRY--------MMAKRYFNKMLS-EGI-EPT-RHTYNVMLWGFF------- 172 (673)
Q Consensus 112 ~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~------- 172 (673)
.+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999988753 137888888877766665543 334467776554 355 443 457776665443
Q ss_pred --hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 173 --LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDA 250 (673)
Q Consensus 173 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 250 (673)
..++++.+..+|+.+.......-..+|......-...+. ..+.+++.+.. .+++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHHH
Confidence 234567788888888854222112333222211111011 01111111100 011112
Q ss_pred HHHHHHHHh--CCC----C-----------C-----C---HHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCC
Q 005856 251 LRIFDEMKS--FDV----K-----------P-----N---AVTYTALLPGLCDAG-------KMVEVQKVLREMVERYIP 298 (673)
Q Consensus 251 ~~~~~~~~~--~~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~ 298 (673)
...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++++.. .
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~ 339 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--V 339 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--c
Confidence 222211110 000 0 0 0 112333332222111 123344556666553 3
Q ss_pred CCcHHhHHHHHHHHhccCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh-------cc
Q 005856 299 PKDNSVFMKLLGVQCKSGHLNAAA-DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI-------IL 370 (673)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~ 370 (673)
|..+..|...+..+...|+.+.|. .+|+..... +|.+...+-..+...-+.|+++.|..+|+.+++... ..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 446666666666666666666665 666666653 344455555566666666677777777666665310 00
Q ss_pred CCC-----CCCC-CchhhHHHHHHHHHccCCHhHHHHHHHHHHHc-CCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 005856 371 RPQ-----STLD-MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK-GVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGR 442 (673)
Q Consensus 371 ~~~-----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 442 (673)
.+. .... .....|...+....+.|..+.|..+|.++.+. .......|...+..-.+. ++.+.|..+|+...+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 010 0000 12235666666666777777777777777765 333334444333333333 347777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 005856 443 RGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK 516 (673)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 516 (673)
. .+-+...|...+......|+.+.|..+|++.+.....+ ....|...+.--...|+.+.+..+.+++.+.-++
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4 33456666677777777777777777777777643211 2345666666666677777788888877777444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-13 Score=129.89 Aligned_cols=221 Identities=10% Similarity=0.050 Sum_probs=121.4
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK-LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
++...|++++|+..|+.+++.+ |.+..+|..+..++...|+ +++|+..|+++++..+. +..+|..+..++...|++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCH
Confidence 5555566666666666666655 5556666666666666664 66666666666555433 555666666666666666
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----H
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL-SLKLETA-----I 181 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~ 181 (673)
++|+..|+++.+.. +.+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..++| +
T Consensus 183 ~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 183 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 66666666666544 3445556666666666666666666666665543 2245555555555555 3433444 3
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHH
Q 005856 182 RFFEDMKSRGISLDVVTYNTMINGYNRFK--KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE---------RADDA 250 (673)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------~~~~a 250 (673)
..+++....... +...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+...|.+.| ..++|
T Consensus 261 ~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A 337 (382)
T 2h6f_A 261 QYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337 (382)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 555555544322 4455555555555555 355555555554 22 1223444555555555442 13555
Q ss_pred HHHHHHH
Q 005856 251 LRIFDEM 257 (673)
Q Consensus 251 ~~~~~~~ 257 (673)
+.+|+++
T Consensus 338 ~~~~~~l 344 (382)
T 2h6f_A 338 LELCEIL 344 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=119.29 Aligned_cols=202 Identities=10% Similarity=-0.037 Sum_probs=91.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVME 492 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 492 (673)
++.++..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34444555555555555555555555544432 1234444445555555555555555555544422 123334444444
Q ss_pred HHhcc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH
Q 005856 493 SLFED-GRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 493 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A 570 (673)
.+... |++++|...++++.+.+..| +...+..++.++...|+ +++|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------------------~~~A 132 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--------------------------------FGLA 132 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--------------------------------HHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--------------------------------HHHH
Confidence 44444 55555555555444411111 13334444444444444 4444
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 571 VKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
...++++++..+. +...+..++.++.+.|++++|.+.+++++..........+..+...+...|+.++|....+.+.+
T Consensus 133 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4444444443322 23334445555555555555555555554432212333333344444455555555444444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=140.19 Aligned_cols=302 Identities=15% Similarity=0.038 Sum_probs=163.1
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE----AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL 376 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (673)
....+......+...|++++|...|+++.+.. +.+ ..++..+...|...|++++|...++++++.... .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~ 82 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----IGD 82 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----ccc
Confidence 33444455555556666666666666655543 122 133444555555555555555555555433211 000
Q ss_pred CCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHh
Q 005856 377 DMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDADA 451 (673)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~ 451 (673)
. +....++..+...|...|++++|...++.+.+. +. .....+
T Consensus 83 ~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 83 Q---------------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp H---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred c---------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 0 111234444555555555555555555444331 00 001234
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHH
Q 005856 452 YICLIESYLRKGE--------------------PADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRV 506 (673)
Q Consensus 452 ~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 506 (673)
+..+...+...|+ +++|...+++..+. +..| ...++..+...+...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4555555555555 55555555554321 1011 123455556666667777777777
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC----HHHHHHHHHccCChHHHHHH
Q 005856 507 MKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN----FDSLLSVLSEKGKTIAAVKL 573 (673)
Q Consensus 507 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~~~~~~g~~~~A~~~ 573 (673)
++++.+.... ++ ...+..++.++...|++++|+..+++..+. +..+. +..++..+...|++++|..+
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 7766654111 11 225566677777777777777777766541 11111 23455666677888888888
Q ss_pred HHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHhcCCcchH
Q 005856 574 LDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKG----G-VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 574 ~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
++++++..... ....+..++.+|.+.|++++|.+.++++++.. . .....++..+...+...|+...+
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 77777542111 14566788888999999999999988877631 1 11244555677788888876443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=121.07 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=112.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005856 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESL 494 (673)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (673)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555555555555555555555555432 2244555555555555556666665555555432 22344555555555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (673)
...|++++|..+++++.+.+..| +...+..++.++...|++++|++.++++.+ ..|+ +..++..+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666655521222 344455566666666666666666666655 2233 2345555666677777
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
|..+++++++..+. +...+..++..+...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777766665432 44555667777777777777777777777654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=124.17 Aligned_cols=196 Identities=15% Similarity=0.069 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005856 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESL 494 (673)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (673)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344445555555555555555555555432 2244555555555555555555555555555432 22344555555556
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHH
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A 570 (673)
...|++++|..+++++.+..+. +...+..++.++...|++++|+..++++.+ ..|+ +..++..+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666655433 455555666666666666666666666655 2232 23355555666777777
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 571 VKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
...++++++..+. +...+..++.++.+.|++++|.+.++++++..
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777766665432 35556677777778888888888888777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=119.67 Aligned_cols=200 Identities=12% Similarity=0.031 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (673)
...+..++..+...|++++|...|+++.+... .+..++..+...|...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 34555666666666666666666666655432 245566666666666666666666666665543 2345556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 005856 136 ILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214 (673)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 214 (673)
+...|++++|...|+++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665421222 334455555555566666666666666555432 134555555555555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 215 AEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666665555432 22444455555555555555555555555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-12 Score=117.57 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 134 (673)
++.++..++.++...|++++|...++.+.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 344455555555555555555555555544322 234455555555555555555555555554432 233444455555
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 005856 135 LILRR-GRYMMAKRYFNKMLSEGIEPT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (673)
Q Consensus 135 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 212 (673)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.... +...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 55555 555555555555544211121 334444444444555555555555554443211 344444444444444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
++|...++++.......+...+..+...+...|+.+.+..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555544444433210233334444444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=125.07 Aligned_cols=201 Identities=17% Similarity=0.146 Sum_probs=159.2
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
.....+..+...+...|+++.|...|+++.+..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4455677788889999999999999999999888899999999999999999999999999998763 347888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998754 346678888889999999999999999999988654 67888899999999999999
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 538 ALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
|+..++++.+ ..|+ +..++.++...|++++|...++++++..+.
T Consensus 178 A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTE--QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 9999999888 3444 445777888999999999999999998654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=139.06 Aligned_cols=271 Identities=11% Similarity=0.047 Sum_probs=209.6
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHh
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADA 451 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~ 451 (673)
..+..+...+...|++++|...|+++.+..+.++ .++..+...|...|++++|...++++.+. + .+.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455567788899999999999999999886665 47889999999999999999999987652 1 1223467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CchhhHHHHHHHHhccCC-----------------HHHHHHHHHH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIED----GHS-PASSLFRSVMESLFEDGR-----------------VQTASRVMKS 509 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~ 509 (673)
+..+...|...|++++|...+++..+. +-. ....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999988753 111 123467778888999999 9999999998
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHHHHH
Q 005856 510 MVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLLDF 576 (673)
Q Consensus 510 ~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~~~ 576 (673)
..+. +..+ ....+..+...+...|++++|+..+++..+.. ..++ +..++..+...|++++|..++++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7664 1111 23467788999999999999999999887621 1112 34577788899999999999999
Q ss_pred HhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 577 CLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGG-----VTDWKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 577 ~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
++...+.. ....+..++.++...|++++|.+.+++++.... ......+..+..+|...|++++|....+.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88753221 145677899999999999999999999886421 11244667789999999999999777766
Q ss_pred HHhhh
Q 005856 647 IRGEM 651 (673)
Q Consensus 647 ~~~~~ 651 (673)
..+..
T Consensus 369 al~~~ 373 (411)
T 4a1s_A 369 HLQLA 373 (411)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66555
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-13 Score=136.32 Aligned_cols=304 Identities=14% Similarity=0.078 Sum_probs=189.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCc----HHhHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCC
Q 005856 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVLKAMIRLS--IPTE 336 (673)
Q Consensus 263 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 336 (673)
.+....+......+...|++++|...+++++.. .|.+ ..++..+...+...|+++.|...+++..... ...+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 455667778888999999999999999999986 3434 3578888999999999999999999987632 1111
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 337 ---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 337 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
..++..+...|...|++++|+..++++++.. +..+.. ...
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~---------------------------------~~~ 126 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS----RELNDK---------------------------------VGE 126 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHTCH---------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----Hhcccc---------------------------------cch
Confidence 1234445555666666666666666664332 110000 001
Q ss_pred HHhHHHHHHHHHhcCC--------------------hhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChHHH
Q 005856 414 PVAFNNLIRGHSKEGN--------------------PDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADA 468 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A 468 (673)
..++..+...|...|+ +++|...++..... +..| ...++..+...+...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 2244555555555555 55665555544321 1111 123566666777777777777
Q ss_pred HHHHHHHHHcCC-CCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHH
Q 005856 469 KTALDSMIEDGH-SPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 469 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A 538 (673)
...+++..+... .++ ..++..+...+...|++++|...++++.+.... ++ ..++..++..+...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 777776654210 011 225666667777788888888887777654111 11 34566777788888888888
Q ss_pred HHHHHHHHhC----CCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHH
Q 005856 539 LGRIDLMMQS----GSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 539 ~~~~~~~~~~----~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A 605 (673)
++.+++..+. +..+. +..++..+...|++++|..+++++++..... ....+..++.++...|+...+
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 8888776652 11111 2346666777888888888888877642111 144566778888888776543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=137.40 Aligned_cols=234 Identities=13% Similarity=0.048 Sum_probs=138.6
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHh
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADA 451 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~ 451 (673)
+..+...+...|++++|...+++..... +....++..+...|...|++++|...++++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 3444444444455555555444443321 223344555566666666666666666554432 0 0112335
Q ss_pred HHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 452 YICLIESYLRKGE-----------------PADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 452 ~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
+..+...|...|+ +++|...+++..+. +..+ ....+..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 66666666655432 1111 123555666667777777777777777
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHccCChHHHHHHHHH
Q 005856 510 MVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQSGS-VPN-------FDSLLSVLSEKGKTIAAVKLLDF 576 (673)
Q Consensus 510 ~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-------~~~~~~~~~~~g~~~~A~~~~~~ 576 (673)
+.+.... ++ ...+..++.+|...|++++|+..+++..+... ..+ +..++.++...|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7654111 11 22566777778888888888888777665211 111 23466667778888888888888
Q ss_pred HhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 577 CLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 577 ~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++...... ....+..++.+|.+.|++++|.+.++++++..
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 77642111 13467789999999999999999999988754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-11 Score=117.41 Aligned_cols=215 Identities=8% Similarity=0.023 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHcCCCCHHhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-------EGNP-------DSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
++|..+|+++....|.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678889999998888899999988888763 5776 88999999988731233567888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCc-hh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCHHHHH
Q 005856 463 GEPADAKTALDSMIEDGHSPA-SS-LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL-MRGHVEEAL 539 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 539 (673)
|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.++. +...|...+.... ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998873 454 33 7888888888889999999999998887543 4455544443322 368888998
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC-CCC--ChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 540 GRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD-CII--DLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
.+|++.++ ..|+ +..++..+...|++++|..+|++++... ..| ....|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888877 3444 3445666677888888888888888863 232 4566777788888888888888888888
Q ss_pred HHcC
Q 005856 613 MEKG 616 (673)
Q Consensus 613 ~~~~ 616 (673)
++..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-12 Score=133.45 Aligned_cols=210 Identities=12% Similarity=0.001 Sum_probs=167.9
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP-DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
.++.+...++......+.+...+..+..++...|++ ++|...|+++.+.. +.+...|..+..+|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356667777776666677888999999999999999 99999999888753 2357888999999999999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CCHH
Q 005856 474 SMIEDGHSPASSLFRSVMESLFED---------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR--------GHVE 536 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 536 (673)
+.++. .|+...+..+...+... |++++|...++++++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98874 47777888888888888 9999999999999888655 678888888888887 8888
Q ss_pred HHHHHHHHHHhCCCCC---C----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHH
Q 005856 537 EALGRIDLMMQSGSVP---N----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (673)
Q Consensus 537 ~A~~~~~~~~~~~~~p---~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 609 (673)
+|++.+++.++ ..| + +..++.++...|++++|...++++++..+. ....+..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887 344 3 445777777888888888888888887654 4556667888888888888887765
Q ss_pred HH
Q 005856 610 FK 611 (673)
Q Consensus 610 ~~ 611 (673)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-13 Score=128.95 Aligned_cols=270 Identities=13% Similarity=0.059 Sum_probs=204.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP-RDADAY 452 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~ 452 (673)
.+......+...|++++|...++++.+..+.+ ..++..+...+...|++++|...++.+... +.. ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 44556677889999999999999999987666 357889999999999999999999887542 111 225678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----hhhHHHHHHHHhccCC--------------------HHHHHHHH
Q 005856 453 ICLIESYLRKGEPADAKTALDSMIEDGH-SPA----SSLFRSVMESLFEDGR--------------------VQTASRVM 507 (673)
Q Consensus 453 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 507 (673)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999998765311 112 3367777888889999 99999999
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHHH
Q 005856 508 KSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 508 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~ 574 (673)
++.... +..+ ....+..+...+...|++++|++.+++..+.. ..++ +..++..+...|++++|..++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887654 2111 23467788899999999999999999887621 1111 344677778899999999999
Q ss_pred HHHhcCCCCC-C----hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCcchHHHHH
Q 005856 575 DFCLGRDCII-D----LASYEKVLDALLAAGKTLNAYSILFKIMEKGG-----VTDWKSSDKLIAGLNQEGNTKQADILS 644 (673)
Q Consensus 575 ~~~~~~~~~~-~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (673)
++++...+.. + ...+..++.++...|++++|.+.+++++.... ......+..+..+|...|++++|....
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9988653221 1 45677899999999999999999999876421 112446667999999999999998777
Q ss_pred HHHHhhh
Q 005856 645 RMIRGEM 651 (673)
Q Consensus 645 ~~~~~~~ 651 (673)
+...+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 6665443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=129.66 Aligned_cols=234 Identities=15% Similarity=0.042 Sum_probs=133.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHh
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRD----ADA 451 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~ 451 (673)
+..+...+...|+++.|...+++..... +....++..+...+...|++++|...++...+... .++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 3334444444444444444444433221 11233455555566666666666666555443100 011 235
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHH
Q 005856 452 YICLIESYLRKGE--------------------PADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRV 506 (673)
Q Consensus 452 ~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 506 (673)
+..+...+...|+ +++|...+++..+. +..+ ....+..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5555566666666 66666666554421 1111 123455566667777777777777
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHH
Q 005856 507 MKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKL 573 (673)
Q Consensus 507 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~ 573 (673)
++++.+.... ++ ...+..++..+...|++++|...+++..+.. ..++ +..++..+...|++++|..+
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7776654110 11 2356667777778888888888877766521 1111 23456666778888888888
Q ss_pred HHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 574 LDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 574 ~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++++++..... ....+..++.+|.+.|++++|.+.++++++..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 88777642111 14466789999999999999999999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-11 Score=116.58 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGR-------VGKL-------NHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
++|+..|+.++... |.++.+|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78999999999886 7899999999888764 4776 889999998887312336778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCccC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERS-VK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF-LSLKLET 179 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 179 (673)
+.|++++|..+|+++.+.. |+ .. .|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999988743 43 33 78888888888899999999998888764 234444443333322 2688888
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEP--TVISYTTMIKGYVAVERADDALRIFDE 256 (673)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (673)
|..+|+.+.+.... +...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888765322 57777888888888888888888888888752 343 355777777777788888888888888
Q ss_pred HHhC
Q 005856 257 MKSF 260 (673)
Q Consensus 257 ~~~~ 260 (673)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-12 Score=108.75 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (673)
...|..+...+...|++++|+..|++..+..|.++.++..+..+|...|++++|...+..+.... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666665542 22445555555566
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
...++++.|...+.+..+.. +.+...+..+...+...|++++|+..|+++++.++. +...|..++.+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666655432 233445555555566666666666666666655443 4555555666666666666666
Q ss_pred HHHHHHHh
Q 005856 540 GRIDLMMQ 547 (673)
Q Consensus 540 ~~~~~~~~ 547 (673)
+.+++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=108.51 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=77.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...|..+...|...|++++|+..|++.++.. +-+...+..+...+...|++++|...+..+....+. +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3444444444445555555555555444422 122334444444444555555555555554444333 33444444444
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
+...++++.|...+++... ..|+ +..++..+...|++++|+..++++++.+|. +...|..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 4455555555555554444 2232 223444444555555555555555554432 34444555555555566666
Q ss_pred HHHHHHHHHHc
Q 005856 605 AYSILFKIMEK 615 (673)
Q Consensus 605 A~~~~~~~~~~ 615 (673)
|++.++++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66655555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=122.63 Aligned_cols=233 Identities=10% Similarity=-0.015 Sum_probs=144.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCC--CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCC--CCCch
Q 005856 308 LLGVQCKSGHLNAAADVLKAMIRLS--IPT---EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST--LDMEA 380 (673)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~ 380 (673)
....+...|+++.|...+++..+.- .+. ...++..+...|...|+++.|+..+.++++... ..+ .....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK----EHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCccchHHHH
Confidence 5556677788888888888776531 111 235677788888899999999999988876542 111 11123
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDA 449 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~ 449 (673)
.++..+...|...|++++|...+++..+.. ..+ ..++..+..+|...|++++|...+++..+. +. +...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 466777778888888888888888776543 111 236677777777788888887777776651 22 3335
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCC-CHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDG----HSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKE-NLDL 521 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~ 521 (673)
.++..+...+...|++++|...+++..+.. -+.....+..+...+...|+ +++|..++++. +..| ....
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 566777777777777777777777765421 11111223445555666666 55555555443 1111 1234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..++..|...|++++|...+++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666666666666666665554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=124.14 Aligned_cols=237 Identities=10% Similarity=0.014 Sum_probs=167.0
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHc--------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK--------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------ 443 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 443 (673)
....++..+...+...|++++|..+++++.+. .+....++..+...|...|++++|...++.+...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888889999999999999999998873 3445667889999999999999999999988753
Q ss_pred C-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHHc--
Q 005856 444 G-VPRDADAYICLIESYLRKGEPADAKTALDSMIED------GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-- 513 (673)
Q Consensus 444 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 513 (673)
+ .+....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|..+++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1224567888899999999999999999998764 2222 3456777888899999999999999998875
Q ss_pred ----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCC---HHH-------HHHHHHccCChHHHH
Q 005856 514 ----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS-------GSVPN---FDS-------LLSVLSEKGKTIAAV 571 (673)
Q Consensus 514 ----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~---~~~-------~~~~~~~~g~~~~A~ 571 (673)
+..| ....+..++.+|...|++++|++.++++.+. ...|. ... ....+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1122 2456778899999999999999999988762 11221 111 112222456666666
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 572 KLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
..++++....+ .....+..++.+|.+.|++++|.+.++++++.
T Consensus 265 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 265 GWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67766655432 23566778888888999999999998887753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=122.45 Aligned_cols=235 Identities=9% Similarity=-0.042 Sum_probs=137.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCCHHHHH
Q 005856 202 MINGYNRFKKMDEAEKLFAEMKEK----NIEP-TVISYTTMIKGYVAVERADDALRIFDEMKSF----DV--KPNAVTYT 270 (673)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~ 270 (673)
....+...|++++|...|++.... +-.+ ...++..+...|...|++++|+..+++..+. +. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556667777777777766542 1011 2345666667777777777777777666431 10 01124566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC----CCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHh-----CCCCCChhhHH
Q 005856 271 ALLPGLCDAGKMVEVQKVLREMVERY----IPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR-----LSIPTEAGHYG 341 (673)
Q Consensus 271 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 341 (673)
.+...|...|++++|...+++.++.. ..+....++..+..+|...|+++.|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 66777777788888877777766531 1111224677778888888888888888888776 22133456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCC---HhHHHHHHHHHHHcCCCCHHhHH
Q 005856 342 ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ---TGKAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 342 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~ 418 (673)
.+...|...|++++|...+++.++.... .+.......+..+...+...|+ .++|..+++... ..+....++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQK----AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 8888889999999999999888654311 0111111223445555555665 444444444431 0022233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMG 441 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~ 441 (673)
.+...|...|++++|...++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556666666666666655544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=125.44 Aligned_cols=214 Identities=10% Similarity=0.036 Sum_probs=129.7
Q ss_pred hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 005856 72 LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV-QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFN 150 (673)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 150 (673)
++++...++...... +.+...+..+...|...|++ ++|...|++..+.. +.+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 23566666666666666666 66666666666543 3345566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC--------CChH
Q 005856 151 KMLSEGIEPTRHTYNVMLWGFFLS---------LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF--------KKMD 213 (673)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~ 213 (673)
+..+. .|+...+..+...+... |++++|...++++.+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66654 34455666666666666 6666666666666665322 456666666666666 6667
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005856 214 EAEKLFAEMKEKNIE--PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLRE 291 (673)
Q Consensus 214 ~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 291 (673)
+|...|++..+.... .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777776666654210 255666666666667777777777776665542 33445566666666666666666655543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-10 Score=113.62 Aligned_cols=227 Identities=10% Similarity=-0.040 Sum_probs=161.5
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHcC--CC----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CC-CHHhH
Q 005856 385 PMIQHLCHNGQTGKAEIFFRQLMKKG--VL----DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PR-DADAY 452 (673)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~-~~~~~ 452 (673)
.....+...|+++.|...+++..+.. .+ ...++..+..+|...|+++.|...++...+. +. .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34455678899999999999987653 22 3457788889999999999999998887652 11 11 24577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 005856 453 ICLIESYLRKGEPADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVE-----KGVKENLDLV 522 (673)
Q Consensus 453 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 522 (673)
+.+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+ ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 78888899999999999999887753 1111 124566777888889999999999998887 4333 36677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCC---CCCHH----HHHHHHHccCC---hHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGS---VPNFD----SLLSVLSEKGK---TIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~----~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
..++.++...|++++|...+++..+... .|... .+...+...++ +.+|+.++++.-. .......+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHH
Confidence 8888899999999999999988877311 23322 23344446677 7777777775211 11123455678
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 005856 593 LDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+..|...|++++|.+.++++++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999988888765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-11 Score=127.50 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
..+|+.+...+.+.|++++|+..|++.++.. +-+...+..+..+|.+.|++++|+..|+++++.++. +...|..++.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455555555555555555555555555432 122344555555555555555555555555555433 44555555555
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
|...|++++|++.|++.++ +.|+ +..++.++...|++++|+..++++++.++. ....|..++.+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 5555555555555555555 3343 233444445555555555555555554432 23344455555555555555
Q ss_pred HHHHHHHHH
Q 005856 605 AYSILFKIM 613 (673)
Q Consensus 605 A~~~~~~~~ 613 (673)
|.+.+++++
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-12 Score=119.97 Aligned_cols=176 Identities=11% Similarity=0.084 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC------CC
Q 005856 161 RHTYNVMLWGFFLSLKLETAIRFFEDMKSR-------GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK------NI 227 (673)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 227 (673)
..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555666666666666666665542 11223444555555566666666666666555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHH
Q 005856 228 -EPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM 306 (673)
Q Consensus 228 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 306 (673)
+....++..+...+...|++++|...++++.+.. +.. ..+..|....++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~-~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKV-LGKDHPDVAKQLN 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHH-HCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHh-cCCCChHHHHHHH
Confidence 1122334444445555555555555554443210 000 0011222334455
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 307 KLLGVQCKSGHLNAAADVLKAMIRL------S-IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 307 ~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
.+...+...|++++|...++++.+. + .+....++..+...|...|++++|...++++++
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555566666666655555442 1 112234455666677777777777777777754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-10 Score=112.82 Aligned_cols=167 Identities=16% Similarity=0.109 Sum_probs=94.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCC----CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC--C----CChhhHHH
Q 005856 273 LPGLCDAGKMVEVQKVLREMVERYI----PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--P----TEAGHYGI 342 (673)
Q Consensus 273 l~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~~ 342 (673)
...+...|++++|...++++..... .+....++..+...+...|+++.|...+.+..+... . ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345567777777777777665311 111234566677777777777777777776654210 0 11345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHH-----cCCCCHHhH
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK-----KGVLDPVAF 417 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 417 (673)
+...|...|++++|+..|+++++..... ........++..+..+|...|++++|...+++... ..+....++
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 7777788888888888887776532110 00001123445555566666666666666666555 323334455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 418 NNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 418 ~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
..+..++.+.|++++|...++...+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-10 Score=110.13 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=138.5
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP--R-DA 449 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~ 449 (673)
+..+...+...|+++.|...+++..... ..++ .++..+...+...|++++|...++..... +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 3444445555666666666666554432 1111 23455666677777777777777665542 211 2 23
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHS--P--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVA 523 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 523 (673)
..+..+...+...|++++|...+++....... + ....+..+...+...|++++|...+++.......+ ......
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 45555667777778888887777777653211 1 12345556666777788888888887776541111 111111
Q ss_pred ----HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHccCChHHHHHHHHHHhcCCCC----CC-hHh
Q 005856 524 ----KILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI----ID-LAS 588 (673)
Q Consensus 524 ----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~-~~~ 588 (673)
..+..+...|++++|...+++.......+. ...+...+...|++++|...+++++..... +. ...
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 223346677888888888777665322111 123556666778888888888777653211 11 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+..++.++...|++++|.+.+++++..
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556788888899999999988887753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-11 Score=126.10 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=126.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
|.++.+++.+..+|...|++++|...|+++.+.. +-+..+|..+..+|.+.|++++|+..|++.++.. +-+...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566778888888888888888888888887753 2256778888888888888888888888887643 2235677778
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCC
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGK 566 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~ 566 (673)
...+...|++++|++.|+++++.++. +...|..++.+|...|++++|++.|++.++ ..|+ +..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhccc
Confidence 88888888888888888888887655 677788888888888888888888888887 5666 3456677778888
Q ss_pred hHHHHHHHHHHhcC
Q 005856 567 TIAAVKLLDFCLGR 580 (673)
Q Consensus 567 ~~~A~~~~~~~~~~ 580 (673)
+++|.+.++++++.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877663
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-10 Score=103.59 Aligned_cols=194 Identities=12% Similarity=-0.025 Sum_probs=139.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
+.++..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 456778888888888899999999999888876543677777778888888899999999998888743 2345677778
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHH----H
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENL-------DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDS----L 557 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~----~ 557 (673)
...+...|++++|...++++++..+. +. ..|..+...+...|++++|++.++++++ ..|+ ... +
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 88888889999999999888887554 44 4577777888888888888888888887 5666 322 3
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+.++. ..+...++++...... +...|. .......|.+++|+..++++++..
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~~-~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLASS-NKEKYA--SEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTTT-CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHHHhcccC-CHHHHH--HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33332 3344455655555422 233332 233345677888999998888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-09 Score=107.62 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=77.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCC
Q 005856 306 MKLLGVQCKSGHLNAAADVLKAMIRL----SIP--T-EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (673)
Q Consensus 306 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (673)
..+...+...|+++.|...+++.... +.+ | ....+..+...+...|++++|...+++.++.. +..+...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~ 172 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL----SSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTSCGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hccCcHH
Confidence 34444555555555555555554332 111 1 12334445566666777777777777665543 1111111
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCC-HHhHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCC---C
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD-PVAFN----NLIRGHSKEGNPDSAFEIVKIMGRRGVPR---D 448 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 448 (673)
...++..+...+...|++++|...+++..... ... ..... ..+..+...|++++|...++........+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 22344455555666666666666666554431 111 11111 12233445566666666655554322111 0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
...+..+...+...|++++|...+++.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112334444445555555555555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-10 Score=96.24 Aligned_cols=166 Identities=14% Similarity=0.062 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (673)
...+..++..+...|++++|...++.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45667778888888889999998888877643 367778888888888888888888888887754 4566777778888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHH
Q 005856 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (673)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 215 (673)
+...|++++|...++++.... +.+...+..+...+...|++++|...++++..... .+...+..+..++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 34666777777777888888888888888776642 2566777777777778888888
Q ss_pred HHHHHHHHHC
Q 005856 216 EKLFAEMKEK 225 (673)
Q Consensus 216 ~~~~~~~~~~ 225 (673)
...++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8777776653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-10 Score=98.19 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=109.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
.+..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 455566666777777777777777766666667777777777777777777777777766542 2356666667777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (673)
.|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766542 334555666666667777777777777777666433 456666666667777777777777
Q ss_pred HHHHHh
Q 005856 542 IDLMMQ 547 (673)
Q Consensus 542 ~~~~~~ 547 (673)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-10 Score=100.62 Aligned_cols=199 Identities=12% Similarity=0.015 Sum_probs=153.7
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLI 456 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 456 (673)
.++..+......+...|++++|...|++..+..+ ++...+..+..++...|++++|...++...+... .+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 3557888889999999999999999999999886 8888888899999999999999999999998642 3677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCch-------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGHSPAS-------SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEA 528 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 528 (673)
.++...|++++|...+++..+.. +.+. ..+..+...+...|++++|+..|+++++.++.. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999999753 2233 457777788899999999999999998874320 24667778888
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
|...|+ ..++++...+...............+.+++|+.+++++++..|.
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 765553 33444444221111111222233467799999999999998754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=109.39 Aligned_cols=223 Identities=11% Similarity=-0.004 Sum_probs=152.1
Q ss_pred ccCCHhHHHHHHHHHHHc-------C-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHhHHHHH
Q 005856 392 HNGQTGKAEIFFRQLMKK-------G-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------GV-PRDADAYICLI 456 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~ 456 (673)
..|+++.|...+++..+. . +....++..+...|...|++++|...++.+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777766652 2 335667889999999999999999999988753 11 22456788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIED------GH-SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK------GVKE-NLDLV 522 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~ 522 (673)
..+...|++++|...+++..+. .. +.....+..+...+...|++++|..+++++.+. +..| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 11 223556778888899999999999999998876 1122 34567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCC----HHHHHHHHHccC------ChHHHHHHHHHHhcCCCCCC
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQS-------GSVPN----FDSLLSVLSEKG------KTIAAVKLLDFCLGRDCIID 585 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~----~~~~~~~~~~~g------~~~~A~~~~~~~~~~~~~~~ 585 (673)
..++.+|...|++++|+.+++++.+. ...|. +..+.......+ .+..+...++.... .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88899999999999999999988762 12222 222222222222 23333333332111 11112
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
...+..++.+|...|++++|.+.++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778899999999999999999988753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.1e-10 Score=102.63 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=111.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc-hh
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---ADAYICLIESYLRKGEPADAKTALDSMIEDGH-SPA-SS 485 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~-~~ 485 (673)
+.++..+..+...+...|++++|...|+.+.+... .+ ...+..+..++.+.|++++|...|++.++... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44556666666666667777777777766665421 12 45566666666666666666666666665421 111 23
Q ss_pred hHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005856 486 LFRSVMESLFE--------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSL 557 (673)
Q Consensus 486 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 557 (673)
.+..+..++.. .|++++|...|+++++..+. +......+.......+...+ ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~---------------~~~~l 154 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLAR---------------KQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 34444555555 66666666666666665433 11111111110000000000 02346
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhc----------CChHHHHHHHHHHHHcC
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAA----------GKTLNAYSILFKIMEKG 616 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~----------g~~~~A~~~~~~~~~~~ 616 (673)
+..+...|++++|+..++++++..|... ...+..++.+|... |++++|++.++++++..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 7777888999999999998888765532 45667788888866 88899999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-10 Score=106.23 Aligned_cols=125 Identities=13% Similarity=0.041 Sum_probs=53.7
Q ss_pred HHHhcCChhHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--hhhHHHHHH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRR----GVPRD-ADAYICLIESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSVME 492 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~ 492 (673)
.|...|++++|...|++..+. +-++. ..+|+.+..+|...|++++|+..+++.++... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555544331 11111 23445555555555555555555555443210 000 123344444
Q ss_pred HHhcc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 493 SLFED-GRVQTASRVMKSMVEKGVKE-N----LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 493 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|... |++++|+..|++.++..+.. + ..++..++..+...|++++|+..++++.+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44443 55555555555544431110 0 12334444444445555555555444444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-08 Score=93.44 Aligned_cols=181 Identities=10% Similarity=0.025 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CHHhH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-----DADAY 452 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ 452 (673)
..++..+..++...|++++|++++.+.+..++ .+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHH
Confidence 33444556666666777777777776655553 55666677777777777777777777777663 34 23444
Q ss_pred HHHHHHH--HhcC--ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC---------CCCH
Q 005856 453 ICLIESY--LRKG--EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV---------KENL 519 (673)
Q Consensus 453 ~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~ 519 (673)
..++.++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+..+ +.+.
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 4454442 2223 677777777776543 24423333334466777777777777776554310 1245
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTI 568 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~ 568 (673)
.++..++.+....|+ +|.++++++.+ ..|+...+.+.-.+...++
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~~~k~~~Fd 300 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHHQEIDAKFD 300 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHHHHHHHHHH
Confidence 555445555555565 67777777777 5666554444433333333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.3e-10 Score=104.82 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhC------C-CC
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVER------YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL------S-IP 334 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~ 334 (673)
++..+...+...|++++|...+++++.. ...|....++..+...+...|++++|...++++.+. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554442 112324455666666666667777666666666543 1 12
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
....++..+...|...|++++|...++++++.
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23456677778888888888888888888764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-08 Score=90.89 Aligned_cols=229 Identities=8% Similarity=-0.009 Sum_probs=170.3
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hhc---
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG--NPDSAFEIVKIMGRRGVPRDADAYICLIESY----LRK--- 462 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 462 (673)
.....++|+.+++.++..+|.+..+|+.-..++...+ ++++++.+++.+...+.. +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3445578999999999999999999999999998888 999999999999886433 556666655555 445
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--TASRVMKSMVEKGVKENLDLVAKILEALLMRGH------ 534 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 534 (673)
+++++++.+++.+.+.. +-+...|..-...+...|.++ +++++++++++.++. |...|+.-...+...|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78889999999988743 456777877777777788887 899999999988776 78888877777777776
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCCh-HHHHHHHHHHhcCC--CCCChHhHHHHHHHHHhcCChHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKT-IAAVKLLDFCLGRD--CIIDLASYEKVLDALLAAGKTLNAYS 607 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~-~~A~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~g~~~~A~~ 607 (673)
++++++.+++++. ..|+ +......+.+.|+. +++..+.++.++.+ ...++..+..++++|.+.|+.++|++
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8888888888887 5565 34455666666764 44556777666643 11245667788888888888999999
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 005856 608 ILFKIMEKGGVTDWKSSD 625 (673)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~ 625 (673)
.++.+.++-++.....|+
T Consensus 280 ~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHhccChHHHHHHH
Confidence 988887654443443433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=102.11 Aligned_cols=128 Identities=17% Similarity=0.093 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-c----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-----
Q 005856 451 AYICLIESYLRK-GEPADAKTALDSMIEDGHSP-A----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL----- 519 (673)
Q Consensus 451 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 519 (673)
++..+...|... |++++|+..+++.++..... + ..++..+...+...|++++|+..|+++.+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455566666664 66666666666655421000 0 234566666777777777777777777765433221
Q ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHH--ccCChHHHHHHHHHHhcC
Q 005856 520 -DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD---------SLLSVLS--EKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 520 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~~~~--~~g~~~~A~~~~~~~~~~ 580 (673)
..+..++.++...|++++|+..+++.++ +.|++. .++..+. ..+++++|+..+++++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1455666677777777777777777665 444421 1233332 356677777777666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-08 Score=93.36 Aligned_cols=180 Identities=10% Similarity=0.081 Sum_probs=94.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI-SLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
|+..|+++...+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 33444444555566666666666666666654432 1245555566666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 224 EKNIEP-----TVISYTTMIKG--YVAVE--RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 224 ~~~~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 23 12333333333 22222 666666666666543 34423333333356666666666666665443
Q ss_pred CC-----C---CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 005856 295 RY-----I---PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (673)
Q Consensus 295 ~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (673)
.. . .|.++.+...++......|+ .|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 24455565455444444554 556666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-09 Score=93.03 Aligned_cols=192 Identities=9% Similarity=0.019 Sum_probs=116.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 005856 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHS-P-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVA 523 (673)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 523 (673)
+...+..+...+...|++++|...|+++++.... | ....+..+..++...|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888889999999999988864311 1 1246677778888899999999999998887554221 2444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCCh----------------H
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL----------------A 587 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~ 587 (673)
.+..++...|.. .++ .+..+...+...|++++|+..++++++..|.... .
T Consensus 83 ~~g~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ---------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp HHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hhh---------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 455555432100 000 0001111122234444444444444443332211 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
....++..|.+.|++++|+..++++++..+... ...+..++.+|.+.|+.++|....+.+....++
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113567888889999999999999887643222 345667888899999999998777777766544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=92.54 Aligned_cols=187 Identities=13% Similarity=0.058 Sum_probs=125.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh----h
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-R-DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS----L 486 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~ 486 (673)
++..+..++..+...|++++|...|+.+.+.... | ....+..+..++.+.|++++|...++++++.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4566777888999999999999999999875322 1 24678888999999999999999999999754 4322 3
Q ss_pred HHHHHHHHhc------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 005856 487 FRSVMESLFE------------------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 487 ~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (673)
+..+..++.. .|++++|...|+++++..+. +...+...... +. +...+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~~------~~~~~~~- 148 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----VF------LKDRLAK- 148 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----HH------HHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----HH------HHHHHHH-
Confidence 4444444443 34555555555555554332 11111111000 00 0000000
Q ss_pred CCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 549 GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 549 ~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
....++..+...|++++|+..++++++..|..+ ...+..++.++.+.|++++|++.++++...++
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 002356677889999999999999999876543 35677899999999999999999998887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=6.2e-08 Score=97.98 Aligned_cols=372 Identities=7% Similarity=0.007 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 005856 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER-ADDALRIFD 255 (673)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~ 255 (673)
++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666666666654 222 7888888888888774 4688888877777666653 344556666
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCcH-HhHHHHHHHHhccCChHHHHHHHHHH
Q 005856 256 EMKSF-DV-KPNAVTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDN-SVFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 256 ~~~~~-~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
..... |. ..+...|...+..+.. .++.+.+.++|+.++.. ++.+. ..|...... .+......+..++.+.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHHHHHHH
Confidence 66542 32 2355666666654432 34566777777777763 22121 122221111 1111112222222111
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC--C-----HhHHHH
Q 005856 329 IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG--Q-----TGKAEI 401 (673)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~ 401 (673)
.+.+..|..+++.+.... +. .+...|...+..-...+ - .+.+..
T Consensus 150 ---------------------~~~y~~ar~~y~~~~~~~----~~----~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 150 ---------------------LPIFQSSFQRYQQIQPLI----RG----WSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHH----HT----CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHHHHH----hh----ccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 122334444444443211 00 12234555444432221 0 345677
Q ss_pred HHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--
Q 005856 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-- 479 (673)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 479 (673)
+|+++....+.++..|...+..+...|++++|..++++.... +.+...|.. |....+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 201 IHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHh
Confidence 888888877778888888888888889999999999988876 334333332 2221111121 22222110
Q ss_pred -------CCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhC
Q 005856 480 -------HSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQS 548 (673)
Q Consensus 480 -------~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 548 (673)
..+ ....|...+..+.+.++.+.|..+|+++ .. +..+...|...+..-...+ +++.|..+++...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 001 1234555555555667777788888777 32 2234445543333323333 577777777776662
Q ss_pred -CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 549 -GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 549 -~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+..|+ +..++....+.|+.+.|..+++++.+ ....|...+.--...|+.+.+.+++++...
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22222 12344444566777777777776621 344555555555556777777777777664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-09 Score=97.78 Aligned_cols=208 Identities=13% Similarity=0.008 Sum_probs=138.5
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD---PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRDADAY 452 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 452 (673)
.+...+......+.+.|++++|...|+.+.+..|.+ +.++..+..+|...|++++|...|+.+.+... +.....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345567777888899999999999999999988766 78899999999999999999999999988532 1224667
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCchh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 453 ICLIESYLR--------KGEPADAKTALDSMIEDGHSPASS-LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 453 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
..+..++.. .|++++|...|+++++.. |+.. ....+. .+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 788888888 999999999999998753 4332 221111 11111000 011244
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC----HHHHHHHHHcc----------CChHHHHHHHHHHhcCCCCCC--h
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQS-GSVPN----FDSLLSVLSEK----------GKTIAAVKLLDFCLGRDCIID--L 586 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~----~~~~~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~ 586 (673)
.++.+|...|++++|+..++++++. +..|. +..++.++... |++++|+..++++++..|... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5667777777777777777777662 11111 22344444433 777888888887777655433 2
Q ss_pred HhHHHHHHHHHhcCChHHH
Q 005856 587 ASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A 605 (673)
.....+..++.+.|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3334455555555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-08 Score=91.05 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC----CHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG----RVQTASRVM 507 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 507 (673)
+|.+.|+...+.| ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666653 56667777777777777777777777777654 34555556666665 5 778888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC---CC-HHHHHHHHHc----cCChHHHHHHHH
Q 005856 508 KSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSV---PN-FDSLLSVLSE----KGKTIAAVKLLD 575 (673)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---p~-~~~~~~~~~~----~g~~~~A~~~~~ 575 (673)
++..+.+ +...+..+...|.. .+++++|++.+++..+.+.. |. ...+...|.. .+++++|..+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8776654 45666667777766 67788888888877775542 22 4456666665 677888888888
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAA-G-----KTLNAYSILFKIMEKGG 617 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~-g-----~~~~A~~~~~~~~~~~~ 617 (673)
++.+.+ .+...+..++.+|... | ++++|+++++++.+.+.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888762 1334556778777753 3 78888888888887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-07 Score=93.15 Aligned_cols=370 Identities=9% Similarity=-0.011 Sum_probs=201.3
Q ss_pred CCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH----hcCCH
Q 005856 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR-YMMAKRYFNKMLSE-GIE-PTRHTYNVMLWGFF----LSLKL 177 (673)
Q Consensus 105 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~ 177 (673)
|+++.+..+|++.... .|++..|...+....+.++ .+....+|+..+.. |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888873 4688888888877766663 34566677776543 432 35566766666543 23567
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (673)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (673)
+.+..+|+.+.......-...|...... ....+...+.+++.+.. +.+..|..+++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 7788888888774211111222222211 11111222332222211 1223333333333
Q ss_pred HhCCCCCCHHHHHHHHHHHHcC--CC-----HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHh
Q 005856 258 KSFDVKPNAVTYTALLPGLCDA--GK-----MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (673)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (673)
...--..+...|...+..-... +- .+.+..+|++++.. .|..+..|...+..+.+.|+.+.|..++++...
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2110001333455444432221 11 34567788888875 344788888888888999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 331 LSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
. |.+...+. .|....+.++. ++.+.+.... ...+.+. . ...
T Consensus 242 ~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~------------------------~~~~~~~-----~-~~~ 282 (493)
T 2uy1_A 242 M--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSM------------------------GEAESAE-----K-VFS 282 (493)
T ss_dssp H--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------------------------------------CH
T ss_pred C--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHh------------------------hccchhh-----h-hcc
Confidence 7 33332222 22222221221 3332211000 0000000 0 000
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCchhhHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-GEPADAKTALDSMIEDGHSPASSLFRS 489 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ 489 (673)
.....+|...+....+.++.+.|..+|+.+ .. ...+...|...+..-... ++.+.|..+|+...+.. +-+...+..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 112245666666666667788888888877 32 122444444322222222 35888888888877643 223344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+.-....|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666667788888888888862 2567777777766777888888887776664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-09 Score=98.20 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=122.0
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----H
Q 005856 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----S 556 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~ 556 (673)
+.+...+..+...+...|++++|...|+++++..+. +...+..++.++.+.|++++|+..++++.. ..|+.. .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHH
Confidence 344556667777788889999999999998888665 677788888889999999999999888776 445532 1
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 635 (673)
....+...++.++|+..+++++...|. +...+..++..|...|++++|++.+++++..... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233355677888888899988888754 4566678999999999999999999998886432 23566778888999999
Q ss_pred CcchHHHH
Q 005856 636 NTKQADIL 643 (673)
Q Consensus 636 ~~~~a~~~ 643 (673)
+.++|...
T Consensus 270 ~~~~a~~~ 277 (287)
T 3qou_A 270 TGDALASX 277 (287)
T ss_dssp TTCHHHHH
T ss_pred CCCcHHHH
Confidence 98888543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-09 Score=113.45 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=100.4
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 425 SKEGNPDSAFEIVKIMG--------RRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
...|++++|.+.++.+. +. .+.+...+..+...+...|++++|...++++++.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666777777776665 32 12344566666666666677777777776666532 2244556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHH
Q 005856 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~ 572 (673)
.|++++|...|+++++.++. +...+..+..++.+.|++++ ++.|+++++ ..|+ +..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777777776666544 45555666666666666666 666666666 4444 3345555666667777777
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 005856 573 LLDFCLGRDCIIDLASYEKVLDALLAAGK 601 (673)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 601 (673)
.++++++.++. ....+..++.++...|+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 66666665433 23444456666655444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.5e-09 Score=92.02 Aligned_cols=122 Identities=13% Similarity=-0.013 Sum_probs=78.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccC
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKG 565 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g 565 (673)
+...+...|++++|+..|+++++.++. +...+..++.++...|++++|+..++++++ ..|+ +..++.++...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 666777778888888888887777655 667777777777788888888888887777 5555 233444444333
Q ss_pred --ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 566 --KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 566 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+.+...++++.. +.|....+...+.++...|++++|++.++++++..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33444555554432 22223334456777777888888888888877654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.9e-09 Score=89.12 Aligned_cols=161 Identities=9% Similarity=-0.004 Sum_probs=109.7
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH-H
Q 005856 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-Y 101 (673)
Q Consensus 23 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 101 (673)
.......+...|++++|+..|+.+++.+ |.+..++..+..++...|++++|...++.+....+ ++..+...... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3445557788889999999998888776 67888888888888889999999999988877643 44433332211 1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETA 180 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 180 (673)
...+....|...+++..+.. |.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334667777776643 3456677777777777777777777777777654332 244666677777777777777
Q ss_pred HHHHHHHH
Q 005856 181 IRFFEDMK 188 (673)
Q Consensus 181 ~~~~~~~~ 188 (673)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-09 Score=91.29 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=59.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHhhcccCCCCCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLK----------------MIEILGRVGKLNHARCILLDMPKKGVQWDE 91 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 91 (673)
..+...|++++|+..|+.+.+.+ |.++.++.. +..++.+.|++++|...|++.++..+. +.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CH
Confidence 36678889999999999888876 455555555 445555555555555555554444322 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 92 DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 92 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
..+..+...|...|++++|...|++..+.. |.+..+|..+...|.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 445555555555555555555555554433 233444444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-07 Score=87.08 Aligned_cols=222 Identities=11% Similarity=0.104 Sum_probs=156.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHhhcccCCCCCCHHHHHHHHHHH----Hhc-
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG--KLNHARCILLDMPKKGVQWDEDMFEVLIESY----GKK- 104 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 104 (673)
.....++|++.++.++..+ |-...+|+.-..++...| ++++++.+++.++...+. +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3445578999999999887 778888998888888888 889999999988877654 555665554444 444
Q ss_pred --CCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 005856 105 --GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK---- 176 (673)
Q Consensus 105 --~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 176 (673)
+++++++.+++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++++.. +-|...|+.....+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 67888888888888765 567778887777777788877 8888888887764 3467777776666666665
Q ss_pred --HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005856 177 --LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE-AEKLFAEMKEKN--IEPTVISYTTMIKGYVAVERADDAL 251 (673)
Q Consensus 177 --~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 251 (673)
++++++.++.+....+. |...|+.+-..+.+.|+... +..+.+++...+ -..+...+..+...+.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77777777777766544 67777777666666666333 444555444322 1235566666677777777777777
Q ss_pred HHHHHHHh
Q 005856 252 RIFDEMKS 259 (673)
Q Consensus 252 ~~~~~~~~ 259 (673)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=91.61 Aligned_cols=137 Identities=9% Similarity=-0.132 Sum_probs=64.7
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (673)
+...|++++|+..++......+. +...+..++.+|.+.|++++|++.+++.++ ..|+ +..++.++...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHH
Confidence 33445555555555554333111 122233455555555555555555555555 3333 2334444555555555
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSI-LFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (673)
|+..++++++.+|. +...|..++.+|.+.|++++|.+. ++++++.. +.++..+......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555555433 344445555566666665554443 35555432 223333333344444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=90.39 Aligned_cols=140 Identities=9% Similarity=-0.022 Sum_probs=99.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 456 IESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
...+...|++++|+..++..... .|+ ...+..+...|...|++++|+..|+++++.++. +...|..++.+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 34445567777888777776542 232 345566777788888888888888888887665 67788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHH-HHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKL-LDFCLGRDCIIDLASYEKVLDALLAAGK 601 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 601 (673)
+++|+..+++.++ ..|+ +..++.++.+.|++++|... ++++++.+|. ++..|......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 8888888888887 5565 34566677788888766554 5888887654 46667667777776664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.1e-09 Score=110.11 Aligned_cols=173 Identities=11% Similarity=-0.051 Sum_probs=100.3
Q ss_pred hcCCChHHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 31 HGAKNSEHALQFFRWVE--------RAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
...+++++|++.|+.+. +.+ |.+..++..+..++...|++++|...|+++.+.++. +...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 45566666666666665 433 455566666666666666666666666666654332 5556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 182 (673)
..|++++|...|++..+.. +.+...|..+..++.+.|++++ +..|++..+.+ +.+...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666543 2344556666666666666666 66666665542 2245556666666666666666666
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 005856 183 FFEDMKSRGISLDVVTYNTMINGYNRFK 210 (673)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 210 (673)
.|+++.+.+.. +...+..+..++...+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 66666554221 2444545555544433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-08 Score=80.38 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
+..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444555555555555555555554432 1244455555555555555555555555555432 2233444555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|++++|..+++++.+..+. +...+..++.++...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665555332 344555555566666666666666655554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-08 Score=87.22 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----CHHHHHHH
Q 005856 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG----HVEEALGR 541 (673)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 541 (673)
.+|.+.|++..+.| +...+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888754 56777788888889999999999999999876 56778888888887 6 89999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCCC-CChHhHHHHHHHHHh----cCChHHHHHHHHHH
Q 005856 542 IDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLA----AGKTLNAYSILFKI 612 (673)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~ 612 (673)
+++..+.+.......+...|.. .+++++|+.+++++.+.++. ..+..+..|+.+|.. .+++++|++.+++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999887655556678888876 88999999999999998642 125677789999999 88999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhc-C-----CcchHHHHHHHHHhhh
Q 005856 613 MEKGGVTDWKSSDKLIAGLNQE-G-----NTKQADILSRMIRGEM 651 (673)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 651 (673)
.+.++ +..++..|...|... | +.++|....++..+.+
T Consensus 156 ~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98833 334566788888754 3 7899988777666555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-08 Score=79.87 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=116.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
.+..+...+...|++++|..+++.+.+..+.+..++..++..+...|++++|...++.+...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 466778889999999999999999998888889999999999999999999999999998764 3467888899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005856 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (673)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998754 34567788889999999999999999999987643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.94 E-value=6e-09 Score=99.15 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=64.3
Q ss_pred cCCHhHHHHHHHHHHHcCCC-------CH----HhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVL-------DP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLI 456 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~-------~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~ 456 (673)
.|++++|.+++++..+..+. +. ..|...+..|...|++++|...+..+.+. +-.+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777766543211 10 12333344444555555555555444321 1000 022444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC---CCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-N----LDLVAKIL 526 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~ 526 (673)
..|...|++++|+..+++.++... .+. ..++..+...|.. |++++|+..|+++++..... + ..++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 455555555555555554432100 010 1233334444444 55555555555444431110 0 22334444
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 005856 527 EALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~ 546 (673)
.+|...|++++|+..+++.+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=88.04 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=97.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES-YL 460 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 460 (673)
.+......+...|++++|...+++..+..|.++..+..+..++...|++++|...++.+.... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344556667777888888888887777767777778888888888888888888887776542 244333222211 11
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHH
Q 005856 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
..+...+|...+++..+.. +.+...+..+...+...|++++|...|+++++..+.+ +...+..++.++...|+.++|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233556666665532 1234555556666666666666666666666654432 2345555666666666666666
Q ss_pred HHHHHHH
Q 005856 540 GRIDLMM 546 (673)
Q Consensus 540 ~~~~~~~ 546 (673)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.3e-08 Score=90.88 Aligned_cols=167 Identities=10% Similarity=0.023 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
|.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 344445555555555666666666666655554332 45555555556666666666666666554432 333222221
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHcCC
Q 005856 133 -FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISL-DVVTYNTMINGYNRFK 210 (673)
Q Consensus 133 -~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 210 (673)
...+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 122444455555566665555442 2345555555666666666666666666665543221 1445566666666666
Q ss_pred ChHHHHHHHHHHH
Q 005856 211 KMDEAEKLFAEMK 223 (673)
Q Consensus 211 ~~~~a~~~~~~~~ 223 (673)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666665555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-08 Score=100.96 Aligned_cols=155 Identities=9% Similarity=-0.071 Sum_probs=113.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
.|++++|++.|+.+.+.+ |.+..++..+..++...|++++|...+++..+.... +...+..+...|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 467889999999988876 677888999999999999999999999998886543 67888888889999999999999
Q ss_pred HHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 005856 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKLETAIRFFEDMKS 189 (673)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 189 (673)
.|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+...+... |++++|...+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988765 4567788888888999999999999999887763 33567788888888888 899999999988887
Q ss_pred CCC
Q 005856 190 RGI 192 (673)
Q Consensus 190 ~~~ 192 (673)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.3e-08 Score=99.87 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=116.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
.|++++|...+++..+..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678899999999988888889999999999999999999999999998864 336788999999999999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHh
Q 005856 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GHVEEALGRIDLMMQ 547 (673)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 547 (673)
++..+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+..++... |++++|.+.+++.++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998753 345678888889999999999999999999988655 677888899999999 999999999999888
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-08 Score=92.03 Aligned_cols=130 Identities=12% Similarity=-0.038 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--chh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGHS---P--ASS 485 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~ 485 (673)
+++.+..+|...|++++|...+++..+. |-.. ...++..+...|.. |++++|+..+++.++.... + ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4555556666666666666666554431 1000 12455566666666 7777777777766542100 0 134
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVK----EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
++..+...+...|++++|+..|+++++.... +. ...+..++.++...|++++|+..+++.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666677777888888888888877764111 11 1244555566666677777777777666
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-06 Score=80.49 Aligned_cols=230 Identities=7% Similarity=-0.031 Sum_probs=165.2
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-ChHH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-G-EPAD 467 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 467 (673)
...+..++|+.+++.+...+|.+..+|+.-..++...| .+++++.+++.+...+.+ +..+|+.-...+.+. + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 44556678999999999999999999999988888888 599999999999987543 788888887777776 7 8899
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-----
Q 005856 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--------TASRVMKSMVEKGVKENLDLVAKILEALLMRGH----- 534 (673)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 534 (673)
++.+++++++.. +-|...|+.-...+...|.++ ++++.++++++.++. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 999999998743 346677766655555555555 899999999998776 88888888888877776
Q ss_pred --HHHHHHHHHHHHhCCCCCCH----HHHHHHHHccCCh--------------------HHHHHHHHHHhcCC----C-C
Q 005856 535 --VEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKT--------------------IAAVKLLDFCLGRD----C-I 583 (673)
Q Consensus 535 --~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~-~ 583 (673)
++++++.+++.+. ..|+. ..+...+.+.|+. .+........+... . .
T Consensus 222 ~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 6888988888887 66663 3344455555443 22222222222221 0 1
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 584 IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSD 625 (673)
Q Consensus 584 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 625 (673)
+++..+..++++|...|+.++|.+.++.+.++-++-...-|+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 346667788888888899999999998887665543333333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=78.35 Aligned_cols=92 Identities=13% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
.+..+...+.+.|++++|+..|++++. ..|+ +..++.++...|++++|+..|++++..+|. ++..|..++.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 334444445555555555555555444 2333 223444444455555555555555554433 233333455555
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 005856 597 LAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~ 615 (673)
.+.|++++|++.|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-06 Score=79.42 Aligned_cols=177 Identities=9% Similarity=0.054 Sum_probs=128.8
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc-C-
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK-G- 105 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~- 105 (673)
++......++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.++...++ +..+|+.-...+... +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 4455567778999999999887 778888888888888888 588999999988887655 777887777766666 6
Q ss_pred CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 005856 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--------MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK- 176 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 176 (673)
++++++.+++.+.+.. +.+..+|+-...++.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 7888888888888765 566777777666666655555 7888888887764 3477777777776666665
Q ss_pred ------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 005856 177 ------LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 177 ------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 211 (673)
++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 56777777777666443 66667665555555444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-07 Score=81.09 Aligned_cols=92 Identities=8% Similarity=-0.081 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
.+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...++++.+..+. +...+..++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34445556666677777776666552 345566666666666667777777777666666433 4556666666666
Q ss_pred cCCCHHHHHHHHHHHHh
Q 005856 531 MRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (673)
..|++++|++.++++.+
T Consensus 83 ~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHH
Confidence 66666666666666665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-06 Score=80.43 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=68.0
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVK-ENL----DLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLS 559 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~ 559 (673)
.+...|++++|..++++..+.... |+. ..+..+...+...|++++|+..++++++.. ..++ +..++.
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 344455555555555554443111 110 112223444444445555555555554411 1111 223444
Q ss_pred HHHccCChHHHHHHHHHHhcC-----CCCC-ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-CHHHHHHHH
Q 005856 560 VLSEKGKTIAAVKLLDFCLGR-----DCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEKG----GVT-DWKSSDKLI 628 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~ 628 (673)
++...|++++|+.+++++++. +..+ ....|..++.+|.+.|++++|++.++++++.. ..+ ....+..++
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 444555555555555555521 0000 12344556666666666666666666555421 111 134455556
Q ss_pred HHHHhcCC-cchHHHHHH
Q 005856 629 AGLNQEGN-TKQADILSR 645 (673)
Q Consensus 629 ~~~~~~g~-~~~a~~~~~ 645 (673)
.+|...|+ +++|....+
T Consensus 244 ~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 244 ECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHH
Confidence 66666663 355544333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-06 Score=83.04 Aligned_cols=84 Identities=12% Similarity=0.007 Sum_probs=40.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhc---CCCCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC---C-CC-CHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLG---RDCII---DLASYEKVLDALLAAGKTLNAYSILFKIMEKG---G-VT-DWKSSD 625 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~---~~~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~---~-~~-~~~~~~ 625 (673)
++..+...|++++|..+++++++ ..+.. ....+..++.+|...|++++|++.++++++.. . .. ....+.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34444455555555555555542 11111 01344555666666666666666666555321 0 00 134444
Q ss_pred HHHHHHHhcCCcchH
Q 005856 626 KLIAGLNQEGNTKQA 640 (673)
Q Consensus 626 ~l~~~~~~~g~~~~a 640 (673)
.++.+|...|+.++|
T Consensus 241 ~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 241 QRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHHcCCcHHH
Confidence 555556666666666
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=75.35 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
.+...+..|.+.|++++|++.|++.++ ..|+ +..++.++...|++++|+..++++++.++. ....|..++.+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 344455555666666666666665555 3333 233455555566666666666666665433 344555666666
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 005856 597 LAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~ 615 (673)
...|++++|++.++++++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6777777777777766664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=75.10 Aligned_cols=93 Identities=17% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+......+.+.|++++|+..|+++++.++. +...|..++.+|...|++++|+..+++.++ ..|+ +..++.++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH
Confidence 333444455555555555555555554433 445555555555555555555555555554 3333 223444455
Q ss_pred ccCChHHHHHHHHHHhcCCC
Q 005856 563 EKGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~ 582 (673)
..|++++|+..|+++++.+|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 55555555555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.9e-08 Score=80.09 Aligned_cols=95 Identities=18% Similarity=0.072 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+...+..+...+...|++++|+..+++++. ..|+ +..++.++...|++++|+..+++++..+|. ++..+..++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 345556677777777888888887777776 4444 344566667778888888888888777654 345566788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 005856 594 DALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.+|...|++++|++.++++++.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.6e-08 Score=79.29 Aligned_cols=91 Identities=10% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+..+...+...|++++|...|++++..++. +...|..+..+|...|++++|+..|++..+ ..|+ +..++.++.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHH
Confidence 334444444555555555555555554433 444445555555555555555555555444 2222 233444444
Q ss_pred ccCChHHHHHHHHHHhcC
Q 005856 563 EKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~ 580 (673)
..|++++|+..|+++++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-07 Score=84.32 Aligned_cols=185 Identities=14% Similarity=-0.046 Sum_probs=98.6
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC----------------
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNL-------IRGHSKEGNPDSAFEIVKIMGRRGVPRD---------------- 448 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------- 448 (673)
..++...|...|.++....|.....|..+ ..++...++..+++..++.... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57899999999999999998888999888 5666666666666555555443 2222
Q ss_pred ------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HH
Q 005856 449 ------ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LD 520 (673)
Q Consensus 449 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 520 (673)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1222334455556666666666666554322 333233333344555566666666555332221 110 12
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.+..+..++.+.|++++|+..|++....+..|. ....+.++.+.|+.++|..+|++++..+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455555555555555555555543222133 1123333444555555555555444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-06 Score=80.55 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=89.8
Q ss_pred HHHHHccCCHhHHHHHHHHHHHcCCCCHH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHH
Q 005856 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPV------AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICL 455 (673)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 455 (673)
+..+...|++++|..++++..+..+.++. .+..+...+...+++++|...++.+...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566667777777777776664422222 2234555555666777777777766652111 12 2246666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 005856 456 IESYLRKGEPADAKTALDSMIED-----GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN-LDLVAK 524 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 524 (673)
...|...|++++|...++++.+. +..+. ..++..+...|...|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66677777777777776666531 11111 124555566666666666666666666543 11111 345556
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHHh
Q 005856 525 ILEALLMRG-HVEEALGRIDLMMQ 547 (673)
Q Consensus 525 l~~~~~~~g-~~~~A~~~~~~~~~ 547 (673)
++.+|...| .+++|++.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 666666666 34666666665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=75.63 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
.+..+...+...|++++|...|++.. +++..++..+...|...|++++|...|++..+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888875 3477888888888888888888888888887764 456677888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEP---------------TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 191 (673)
..|++++|...|++..+..... ....+..+..++...|++++|...|+.+.+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887753211 12567777778888888888888888888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.6e-07 Score=81.15 Aligned_cols=189 Identities=7% Similarity=-0.112 Sum_probs=132.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHhhccc------------CCC-----
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKM-------IEILGRVGKLNHARCILLDMPK------------KGV----- 87 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~------------~~~----- 87 (673)
..++++.|.+.|..+.+.+ |.....|..+ ..++.+.+...++...+..-+. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999998 7888999988 6777777777777666665544 221
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HH
Q 005856 88 ---QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT--RH 162 (673)
Q Consensus 88 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~ 162 (673)
.............+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0113445556677888888999988888887654 333255556667788888888888887654421 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005856 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (673)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (673)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566677778888888888888888875432243 335556666777788888888888888775
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6.6e-07 Score=76.01 Aligned_cols=123 Identities=12% Similarity=-0.004 Sum_probs=63.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++|+..+++..+ ..|+ +..++.++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 344444555566666666666666555433 455555566666666666666666665555 2232 223444444
Q ss_pred ccCChHHHHHHHHHHhcCCCCCChHhH--HHHHHHHHhcCChHHHHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIIDLASY--EKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
..|++++|...++++++..+. +...+ ...+..+.+.|++++|++.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555555554432 22222 223333555566666666655543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.9e-07 Score=79.32 Aligned_cols=120 Identities=12% Similarity=0.139 Sum_probs=84.6
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH-HHccCCh-
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSV-LSEKGKT- 567 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~-~~~~g~~- 567 (673)
+...|++++|...+++..+..+. +...|..++.+|...|++++|+..++++.+ ..|+ +..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34567778888888887777544 667777788888888888888888887776 3343 2345555 5567887
Q ss_pred -HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 568 -IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 568 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
++|...+++++..++. +...+..++.++...|++++|+..++++++...
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888888887654 456666788888888888888888888887643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.4e-07 Score=86.08 Aligned_cols=126 Identities=12% Similarity=0.007 Sum_probs=77.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (673)
.+..+...+...|++++|+..|+++++..+... ...|..+..+|.+.|++++|+..++++++ ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 444445555555555555555555555533321 45666777777777777777777777776 44
Q ss_pred CC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 005856 552 PN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA-YSILFKIME 614 (673)
Q Consensus 552 p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~ 614 (673)
|+ +..++.++...|++++|+..|+++++..|. +...+..++.++.+.|++++| ...++++..
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 334555666677777777777777776543 345566677777777777777 345555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.9e-07 Score=79.32 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=101.0
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH-HHhcCCH-
Q 005856 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-YGKKGIV- 107 (673)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~- 107 (673)
+...|+++.|+..|+.+.+.. |.+..++..++.++...|++++|...|+...+..+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 356788999999999998887 778899999999999999999999999998876543 67788888888 7788998
Q ss_pred -HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005856 108 -QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (673)
Q Consensus 108 -~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (673)
++|...|+.+.+.. +.+...+..+...+...|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998865 4557788888899999999999999999988763
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-05 Score=75.11 Aligned_cols=165 Identities=11% Similarity=-0.011 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HHH
Q 005856 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERS-----VKSYDALFKLILRRGRYMMAKRYFNKMLSEGI---EPT--RHT 163 (673)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 163 (673)
+...+..+...|++++|...+....+...... ...+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33444555556666666666655544321110 01123344445555666666666666543211 111 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC----CCC-CHH
Q 005856 164 YNVMLWGFFLSLKLETAIRFFEDMKS---R-GISL--DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN----IEP-TVI 232 (673)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 232 (673)
++.+...|...|++++|...++++.+ . +..+ ...++..+..+|...|++++|...+++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 55666666666666666666666542 1 1111 11455666666666666666666666654321 111 134
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 005856 233 SYTTMIKGYVAVERADDA-LRIFDEMK 258 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a-~~~~~~~~ 258 (673)
+|..+...|...|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 556666666666666666 55555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-07 Score=79.54 Aligned_cols=156 Identities=13% Similarity=-0.076 Sum_probs=84.1
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcCChH
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR----RGVP-RDADAYICLIESYLRKGEPA 466 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~ 466 (673)
..|++++|...++.+.........++..+...+...|++++|...+++... .+.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 456777777755444333234556667777777777777777777766654 1111 12345566666666777777
Q ss_pred HHHHHHHHHHHc----CCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CC-CCC--HHHHHHHHHHHHcCCCH
Q 005856 467 DAKTALDSMIED----GHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GV-KEN--LDLVAKILEALLMRGHV 535 (673)
Q Consensus 467 ~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~--~~~~~~l~~~~~~~g~~ 535 (673)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. .. .+. ...+..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777666665532 1011 1223445555566666666666666665543 00 111 12234555556666666
Q ss_pred HHHHHHHHHHHh
Q 005856 536 EEALGRIDLMMQ 547 (673)
Q Consensus 536 ~~A~~~~~~~~~ 547 (673)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-06 Score=70.26 Aligned_cols=114 Identities=15% Similarity=0.049 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
..+..++..+...|++++|+..++++.. ..|+ +..++..+...|++++|...+++++...+. +...+..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 3444455555556666666666655554 2232 223444555566666666666666655432 34555667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 005856 596 LLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (673)
+...|++++|.+.+++++... +.+...+..+..++...|+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777653 23455555666666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-05 Score=73.54 Aligned_cols=240 Identities=9% Similarity=-0.074 Sum_probs=115.3
Q ss_pred ccCCHh-HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 392 HNGQTG-KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN----------PDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 392 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
+.|.++ +|+.++..+...+|.+..+|+.--.++...+. +++++.+++.+...+. -+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 445443 67777777777777777777665555544332 3455555555555322 25555555555555
Q ss_pred hcCC--hHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 461 RKGE--PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR-VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 461 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
..++ +++++.+++.+.+.. +-|...|+.-...+...|. ++++++.++++++.++. |...|+.....+...+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 5552 555555555555432 2344455444444444554 35555555555555444 44555444333332210000
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc-----------CChHHHH
Q 005856 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA-----------GKTLNAY 606 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------g~~~~A~ 606 (673)
+ ++ ..-...+.++++++++++++..+|. +...|+.+-..+.+. +.+++++
T Consensus 198 ~-------------~~-----~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 198 S-------------GP-----QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred c-------------cc-----ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 0 00 0000013355566666666655443 333343333333333 3456666
Q ss_pred HHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 607 SILFKIMEKGGVTDWKSSDK--LIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
+.++++++..+..-|..... +.......|..+++......+.+.++.
T Consensus 259 ~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 259 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 77777666543222322111 111222345555555556666666643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.7e-08 Score=89.23 Aligned_cols=98 Identities=12% Similarity=-0.024 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (673)
...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444555555555555555555554432 1144455555555555555555555555554421 1223444445555
Q ss_pred HhccCCHHHHHHHHHHHHHc
Q 005856 494 LFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~ 513 (673)
+...|++++|...|+++.+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-05 Score=73.62 Aligned_cols=153 Identities=9% Similarity=-0.056 Sum_probs=117.8
Q ss_pred HhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN--PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGE-PADAKTAL 472 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 472 (673)
+++++.+++.+....|.+..+|+.-..++...+. +++++.+++.+.+... -|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6789999999999999999999999888888884 8999999999998753 488899888888888888 58999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC------
Q 005856 473 DSMIEDGHSPASSLFRSVMESLFED--------------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR------ 532 (673)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 532 (673)
+++++.. +-|...|+.....+... +.++++++.+..++...+. |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 9999864 45667777766655544 4578888888888888766 777777555555444
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCC
Q 005856 533 -----GHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 533 -----g~~~~A~~~~~~~~~~~~~p~ 553 (673)
+.++++++.++++.+ ..|+
T Consensus 247 ~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred chHHHHHHHHHHHHHHHHHh--hCcc
Confidence 235566666666665 4555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-07 Score=74.88 Aligned_cols=94 Identities=13% Similarity=-0.023 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 005856 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594 (673)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 594 (673)
...+..+...+.+.|++++|+..+++++. ..|+ +..++.++...|++++|+..+++++..+|. ++..+..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34455566667777777777777777766 3444 334566666777777777777777777654 3445567888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 005856 595 ALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 595 ~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+|...|++++|++.+++++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-06 Score=72.67 Aligned_cols=127 Identities=9% Similarity=-0.036 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
.+..++..+...|+++.|...|+...+.... +..++..+...+...|++++|...+++..+.. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444555555555555555554443221 34445555555555555555555555554432 233444555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNV--MLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 187 (673)
..|++++|...|++..+.. +.+...+.. .+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555554432 112223322 222244455555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=69.56 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=72.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSV 560 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~ 560 (673)
..+..+...+...|++++|...++++....+. +...+..++.++...|++++|++.+++..+ ..|+ +..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHH
Confidence 34555555666667777777777776665433 456666667777777777777777776666 2333 2345556
Q ss_pred HHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 602 (673)
+...|++++|...+++++...+. +...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66777777777777777776543 345556677777776664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=89.88 Aligned_cols=151 Identities=11% Similarity=-0.072 Sum_probs=100.5
Q ss_pred CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD--------------ADAYICLIESY 459 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 459 (673)
+++++|...++......+.+...+..+...+...|++++|...|+++........ ...|..+..+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444333344566778888888888888888888888877532211 46677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH-
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA- 538 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 538 (673)
.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..++...|++++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777643 234566667777777777777777777777776554 566666777777777777766
Q ss_pred HHHHHHHH
Q 005856 539 LGRIDLMM 546 (673)
Q Consensus 539 ~~~~~~~~ 546 (673)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-07 Score=85.02 Aligned_cols=91 Identities=9% Similarity=-0.133 Sum_probs=59.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
...+...|++++|+..|+.+.+.. |.+...+..+..++.+.|++++|...++...+..+. +...+..+..+|...|+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 11 GNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 345666677777777777776665 556666666677777777777777777766665432 55666666666666777
Q ss_pred HHHHHHHHHHHHHc
Q 005856 107 VQESVKIFDIMKQL 120 (673)
Q Consensus 107 ~~~a~~~~~~~~~~ 120 (673)
+++|...|++..+.
T Consensus 88 ~~~A~~~~~~al~l 101 (281)
T 2c2l_A 88 YDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777766666553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=77.38 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=52.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccC----CC-CCCHHHHHHHHHHHHhcCC
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK----GV-QWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~ 106 (673)
..|+++.|.+.++.+.... .....++..+..++...|++++|...+++.... +. +....++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4556666666444443211 234455555555666666666666655554431 10 0122334444445555555
Q ss_pred HHHHHHHHHHHHHc----CCc--cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQL----GVE--RSVKSYDALFKLILRRGRYMMAKRYFNKM 152 (673)
Q Consensus 107 ~~~a~~~~~~~~~~----g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (673)
+++|...+++..+. +-. .....+..+...+...|++++|...+++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555544332 100 01123344444444445555555444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=7e-07 Score=71.67 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.|..++.++...|++++|++.+++.+..
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666677777777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=70.28 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=78.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG--VTD----WKSSDKLIA 629 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~~ 629 (673)
.++..+.+.|++++|+..|+++++.+|. +...|..++.+|.+.|++++|++.++++++... ..+ ..++..++.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 4777888899999999999999988754 567788899999999999999999999987421 222 346677899
Q ss_pred HHHhcCCcchHHHHHHHHHhhhcccch
Q 005856 630 GLNQEGNTKQADILSRMIRGEMSRGSQ 656 (673)
Q Consensus 630 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 656 (673)
++...|++++|....+...+..++++.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 999999999998877666655554433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-06 Score=68.11 Aligned_cols=101 Identities=16% Similarity=0.036 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
+.+...+..++..+...|++++|...+++..+.... +..++..+...|...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 344456666666666677777777777666654322 55666666666666666666666666666543 3345556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 005856 133 FKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
..++.+.|++++|...|++..+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666666666553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-06 Score=65.78 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (673)
...+..++.++...|+++.|...++++.+... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34444555555555555555555555544322 234445555555555555555555555554432 2334444455555
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 005856 136 ILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~ 154 (673)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.2e-06 Score=65.34 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005856 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG 170 (673)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (673)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555666666666666666655543 2344455555555556666666666665555432 2244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 005856 171 FFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~ 190 (673)
+...|++++|...++++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=7.1e-07 Score=73.90 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 134 (673)
+...+..+...+...|++++|...|+..+..++. +...|..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3344444455555555555555555554443322 44444445555555555555555555554432 223344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 005856 135 LILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~ 154 (673)
+|...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.4e-06 Score=66.62 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=61.5
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
.+...+..+...+...|+++.|...+++..+..+.+..++..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445566666666666666666666666666665566666666666666666666666666665542 224555666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 005856 458 SYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~ 477 (673)
++...|++++|...+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-06 Score=67.58 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 598 (673)
...+..+...|++++|+..+++.++ ..|+ +..++.++...|++++|+..++++++.++. +...|..++.++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3344444444444444444444444 2222 222333444444445555555444444332 23344455555555
Q ss_pred cCChHHHHHHHHHHHH
Q 005856 599 AGKTLNAYSILFKIME 614 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~~ 614 (673)
.|++++|++.++++++
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-06 Score=72.20 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
..+..+...+...|++++|+..|++.++ ..|+ +..++.++...|++++|+..++++++.++. +...|..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555555555555555555555 2333 233444555556666666666666655433 34455566666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 005856 596 LLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~ 615 (673)
|...|++++|++.++++++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66667777777666666653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.1e-06 Score=66.10 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (673)
|..+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|+..++++++.++. +...|..++.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3344444444444444444444444322 122334444444444445555555555444444332 34444444444444
Q ss_pred CCCHHHHHHHHHHHHh
Q 005856 532 RGHVEEALGRIDLMMQ 547 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~ 547 (673)
.|++++|+..+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555544444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-06 Score=73.00 Aligned_cols=84 Identities=8% Similarity=-0.125 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
..+..+..+|...|++++|+..+++.++ ..|+ +..++.++...|++++|+..++++++..+. +...+..++.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 3444455555555555555555555444 2232 122333334444444444444444443322 22333334444
Q ss_pred HHhcCChHHHH
Q 005856 596 LLAAGKTLNAY 606 (673)
Q Consensus 596 l~~~g~~~~A~ 606 (673)
+...|+..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-06 Score=70.60 Aligned_cols=93 Identities=14% Similarity=-0.041 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005856 95 EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS 174 (673)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (673)
..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|+..|++....+ +.+...+..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 333444444445555555554444432 2334444444444444555555555554444432 12333444444444455
Q ss_pred CCHHHHHHHHHHHHh
Q 005856 175 LKLETAIRFFEDMKS 189 (673)
Q Consensus 175 ~~~~~a~~~~~~~~~ 189 (673)
|++++|...|+....
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-05 Score=62.88 Aligned_cols=53 Identities=13% Similarity=-0.110 Sum_probs=23.3
Q ss_pred HHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+...|++++|...++++++..+. +...+..++.++...|++++|.+.++++++
T Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 48 YAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444444444444443322 233344444555555555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-06 Score=69.34 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+..+...+...|++++|+..|+++++..+. +...|..+..+|...|++++|+..+++.++ ..|+ +..++.++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 334444444455555555555555444332 344444455555555555555555555444 2333 223444444
Q ss_pred ccCChHHHHHHHHHHhcCC
Q 005856 563 EKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~ 581 (673)
..|++++|+..++++++..
T Consensus 91 ~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC
Confidence 5555555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=77.05 Aligned_cols=141 Identities=12% Similarity=-0.025 Sum_probs=60.8
Q ss_pred HhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC----------------HhhHH
Q 005856 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERS----------------VKSYD 130 (673)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~ 130 (673)
...|+++.+.+.++.-..... .....+..+...+...|++++|...|++..+... .+ ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHH
Confidence 334445555544443322111 1233444555555566666666666666655321 11 13444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 005856 131 ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFK 210 (673)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 210 (673)
.+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++....... +...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 44445555555555555555554432 223444444445555555555555555554443211 3334444444443333
Q ss_pred C
Q 005856 211 K 211 (673)
Q Consensus 211 ~ 211 (673)
+
T Consensus 171 ~ 171 (198)
T 2fbn_A 171 E 171 (198)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.3e-06 Score=66.27 Aligned_cols=50 Identities=18% Similarity=0.022 Sum_probs=20.6
Q ss_pred ccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
..|++++|+..++++++.+|. +...+..++.+|...|++++|++.+++++
T Consensus 63 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 63 ENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444443322 22233344444444444444444444444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.7e-06 Score=66.32 Aligned_cols=95 Identities=11% Similarity=-0.047 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+...+..++..+...|++++|+..+++.+. ..|+ +..++.++...|++++|...+++++..++. +...+..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 455666666666677777777777766665 3333 334555566677777777777777776543 455666788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 005856 594 DALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.++...|++++|++.+++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-06 Score=84.35 Aligned_cols=114 Identities=13% Similarity=-0.021 Sum_probs=61.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTI 568 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~ 568 (673)
.+...|++++|.+.++++++..+. +...|..++.+|.+.|++++|++.+++.++ ..|+ +..++.++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 344556666666666666665433 455566666666666666666666666665 3444 233455555666666
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHH--HHhcCChHHHHHHHH
Q 005856 569 AAVKLLDFCLGRDCIIDLASYEKVLDA--LLAAGKTLNAYSILF 610 (673)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~g~~~~A~~~~~ 610 (673)
+|+..++++++..+.. ...+..++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666654332 2233344444 556666666666666
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-05 Score=61.60 Aligned_cols=90 Identities=17% Similarity=0.031 Sum_probs=33.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhh
Confidence 3333334444444444444433321 112233333333333444444444444444333222 23333333334444444
Q ss_pred HHHHHHHHHHHH
Q 005856 535 VEEALGRIDLMM 546 (673)
Q Consensus 535 ~~~A~~~~~~~~ 546 (673)
+++|.+.+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.9e-06 Score=64.74 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=39.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCC
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGK 566 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~ 566 (673)
...+.+.|++++|...|+++++..+. +...|..+..++...|++++|+..+++.++ ..|+ +..++.++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 33444444555555555544444333 344444444444445555555555444444 3333 2223334444455
Q ss_pred hHHHHHHHHHHhcC
Q 005856 567 TIAAVKLLDFCLGR 580 (673)
Q Consensus 567 ~~~A~~~~~~~~~~ 580 (673)
+++|+..++++++.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-05 Score=78.70 Aligned_cols=119 Identities=11% Similarity=-0.016 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 005856 496 EDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN----FDSLLSVLS 562 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~~~~ 562 (673)
..|+++.|..+++..... +..+ ...++..++..|...|++++|..+++++... +..|. +...+..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555555555554432 1111 1234445555555555665555555544431 11111 122344444
Q ss_pred ccCChHHHHHHHHHHhcCC---CCCC---hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRD---CIID---LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~---~~~~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
..|++++|..++++++... +.|. ...+..++..+...|++.+|...+.++.+
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5566666665555554321 1110 22334444555556666666665555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-06 Score=71.16 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC---------CC-------CCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQS---------GS-------VPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-------~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
+...+..+.+.|++++|+..|++.+.. +. .|. +..++.++...|++++|+..+++++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444455555555555555555554441 00 122 2345666667888888888888888876
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 582 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
|. +...|..++.+|...|++++|+..+++++...
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 44 45666778888888888888888888888764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=9.2e-06 Score=66.18 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 590 EKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 590 ~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
...+.+|...|++++|++.|+++++
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5677777777777777777777665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=9.8e-06 Score=65.21 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC--CC----hHhHHH
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI--ID----LASYEK 591 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 591 (673)
+..++..+...|++++|+..+++..+ ..|+ +..++..+...|++++|..+++++++..+. ++ ...+..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44444555555555555555555544 1222 223444444555555555555555554321 11 455667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++.++...|++++|.+.+++++...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888888888888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=9e-05 Score=76.15 Aligned_cols=169 Identities=10% Similarity=-0.007 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-
Q 005856 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR----------VQTASRVMKSMVEKGVKENLDLVAKILEALLMRG- 533 (673)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 533 (673)
.++|++.+++++... +-+...|+.-...+...|+ ++++++.++.+++.+++ +..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356777777777643 2234455555555555555 88999999999988777 7888888888888888
Q ss_pred -CHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccC-ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc--------
Q 005856 534 -HVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKG-KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA-------- 599 (673)
Q Consensus 534 -~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------- 599 (673)
+++++++.++++.+ ..|. |..-..++...| .+++++++++++++.++. +...|...+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 77999999999988 5565 344555666777 889999999999988765 566777777777764
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcch
Q 005856 600 ------GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQ 639 (673)
Q Consensus 600 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (673)
+.+++|++.+++++... +.+...|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999865 4466788888888888887555
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.9e-06 Score=70.13 Aligned_cols=93 Identities=15% Similarity=-0.015 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHHHHHHhcCCC---C--CChHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRDC---I--IDLAS 588 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~ 588 (673)
+..+...+...|++++|++.+++..+.. ..++ +..++..+...|++++|..+++++++... . .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3444555555555555555555444310 0000 11233344445555555555555443210 0 01334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+..++..+...|++++|.+.++++++
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55677777777777777777777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=63.61 Aligned_cols=59 Identities=5% Similarity=-0.017 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 60 LKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (673)
Q Consensus 60 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (673)
..++.++...|++++|...++...+.... +...+..+...+...|++++|...|++..+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33333344444444444444433332211 233333333333444444444444444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00011 Score=73.63 Aligned_cols=204 Identities=9% Similarity=-0.002 Sum_probs=140.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCC--------CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCC
Q 005856 344 IENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD--------MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD 413 (673)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 413 (673)
...+.+.|++++|++.|..+++............ .....+..+...|...|++++|.+.+..+.... .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888887776542110000000 001246778899999999999999999877643 222
Q ss_pred H----HhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---
Q 005856 414 P----VAFNNLIRGHSKEGNPDSAFEIVKIMGR----RGVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGHS--- 481 (673)
Q Consensus 414 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 481 (673)
. .+.+.+...+...|+++.|..+++.... .+..+ -..++..+...+...|++++|..++++....-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2344455555667899999999987654 22222 3567888999999999999999999988743111
Q ss_pred -C-chhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CC-CCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 482 -P-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GV-KEN---LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 482 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+ ....+..++..|...|++++|..++++.... .. .|. ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1346777888999999999999999988764 12 221 23455667777889999999988877664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-05 Score=63.19 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI 525 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 525 (673)
..+..+...+...|++++|...+++..+. .|+ ...+..+...+...|++++|...++++.+..+. +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 33334444444444444444444444432 122 233333344444444444444444444443222 33344444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..++...|++++|...+++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-05 Score=62.59 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 005856 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (673)
Q Consensus 265 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (673)
+...+..+...+...|+++.|...|+..+.. .|.+..++..+..++...|+++.|...++...+.. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3445555555555556666666655555553 34455556666666666666666666666655543 33455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHch
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
.+|...|++++|+..|+.+++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666666665443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-05 Score=79.79 Aligned_cols=125 Identities=11% Similarity=-0.041 Sum_probs=80.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP 552 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 552 (673)
+......+.+.|++++|+..|+++++..+... ...|..+..+|.+.|++++|+..++++++ ..|
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p 348 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LDS 348 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCC
Confidence 34444445555555555555555555432211 46677788888888888888888888887 455
Q ss_pred C----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 005856 553 N----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS-ILFKIME 614 (673)
Q Consensus 553 ~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~-~~~~~~~ 614 (673)
+ +..++.++...|++++|+..|+++++..+. +...+..++.++.+.|++++|.+ .+.+|..
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 345666777888888888888888887654 34566678888888888887764 3444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-05 Score=60.74 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIES 458 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 458 (673)
..+..+...+...|++++|...+++..+..+.+..++..+..++...|++++|...++...+.. +. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 3445555566666666666666666666655566666666666666666666666666665542 22 35555566666
Q ss_pred HHhc-CChHHHHHHHHHHHHc
Q 005856 459 YLRK-GEPADAKTALDSMIED 478 (673)
Q Consensus 459 ~~~~-~~~~~A~~~~~~~~~~ 478 (673)
+... |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=65.16 Aligned_cols=96 Identities=11% Similarity=-0.085 Sum_probs=73.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCC------C-----hHhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCII------D-----LASYEKVLDALLAAGKTLNAYSILFKIMEK-------GGV 618 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~-------~~~ 618 (673)
.+..+.+.|++++|+..|+++++..|.. + ...|..++.++.+.|++++|+..++++++. . +
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p 95 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q 95 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C
Confidence 4455556667777777777666655441 1 237889999999999999999999999986 4 3
Q ss_pred CCHHHH----HHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 619 TDWKSS----DKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 619 ~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
.....| ...+.++...|++++|....++..+..++
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 456677 88999999999999998877777777633
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.3e-05 Score=60.92 Aligned_cols=100 Identities=14% Similarity=-0.016 Sum_probs=55.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD----ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR 488 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 488 (673)
+...+..+...+...|++++|...|+...+.. |+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44455555555555566666666665555432 33 4455555556666666666666666655432 12344555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGV 515 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (673)
.+...+...|++++|...|++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555566666666666666666665543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=64.33 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC-------HhhH
Q 005856 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERS-------VKSY 129 (673)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-------~~~~ 129 (673)
..+..++..+...|+++.|...++...+..+ .+...+..+...|...|++++|...+++..+.. +.+ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHH
Confidence 3445555555566666666666665554432 245555555555556666666666665555432 111 4445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 005856 130 DALFKLILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (673)
..+...+...|++++|...|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555555556666666666655554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.2e-05 Score=61.36 Aligned_cols=94 Identities=13% Similarity=-0.036 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQS-GSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDA 595 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 595 (673)
..++..+...|++++|+..++++.+. +..|. +..++.++...|++++|+..++++++..|... ...+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 44667788888999999888888772 23331 33466677788889999988888888765532 5556778888
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 005856 596 LLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+...|++++|++.+++++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888899999998888888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.4e-06 Score=68.74 Aligned_cols=61 Identities=16% Similarity=0.033 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCC
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (673)
..|..+..+|.+.|++++|+..++++++ ..|+ +..++.++...|++++|...+++++..+|
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 4555566666666666666666666665 3444 23355555566666666666666666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=9.8e-06 Score=81.45 Aligned_cols=148 Identities=12% Similarity=0.037 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC----------------CHHHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVP----------------NFDSLLSV 560 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p----------------~~~~~~~~ 560 (673)
+++++|...|+...+..+. ....+..+...+.+.|++++|+..|++.++. +..+ -+..++.+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444443333211 3456778899999999999999999999872 2221 12356777
Q ss_pred HHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchH
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
+.+.|++++|+..++++++.++. +...|..++.+|...|++++|+..|+++++... .....+..+..++...|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998765 567778999999999999999999999998643 3455677788999999999988
Q ss_pred H-HHHHHHH
Q 005856 641 D-ILSRMIR 648 (673)
Q Consensus 641 ~-~~~~~~~ 648 (673)
. .+...+.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 4 4444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.4e-06 Score=65.36 Aligned_cols=83 Identities=18% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 005856 532 RGHVEEALGRIDLMMQSGS-VPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAY 606 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 606 (673)
.|++++|+..+++.++.+. .|+ +..++.++...|++++|+..++++++..|. +...+..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4556666666666665210 132 233555556667777777777766666544 3455556777777777777777
Q ss_pred HHHHHHHHc
Q 005856 607 SILFKIMEK 615 (673)
Q Consensus 607 ~~~~~~~~~ 615 (673)
+.+++++..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=76.29 Aligned_cols=82 Identities=13% Similarity=-0.064 Sum_probs=44.9
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (673)
++.++.+.|++++|+..++++++.++. +...|..++.+|...|++++|++.++++++.. +.+...+..+..++...++
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555432 34445556666666666666666666666543 2234444455555555555
Q ss_pred cchH
Q 005856 637 TKQA 640 (673)
Q Consensus 637 ~~~a 640 (673)
.+++
T Consensus 357 ~~~a 360 (370)
T 1ihg_A 357 QKDK 360 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.9e-05 Score=59.37 Aligned_cols=92 Identities=12% Similarity=-0.070 Sum_probs=54.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC---HHHHHHHHH
Q 005856 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDR---ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIE 99 (673)
Q Consensus 26 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 99 (673)
....+...|+++.|...|+.+.+.. |.+. .++..+..++...|++++|...|+.+.+..+. + ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 3445556666666666666666654 3333 45556666666666666666666666554322 2 445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005856 100 SYGKKGIVQESVKIFDIMKQL 120 (673)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~ 120 (673)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=66.48 Aligned_cols=131 Identities=16% Similarity=0.005 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PA----SS 485 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~ 485 (673)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555544331000 01 124444555555555555555555554421100 00 22
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEK----GVK-ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
.+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344444555555555555555555433 100 012233445555555555555555555444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=4.4e-05 Score=62.00 Aligned_cols=112 Identities=11% Similarity=-0.072 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKL 573 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~ 573 (673)
+++++|..+|++..+.|.. +.. +...|...+.+++|++.+++..+.+.......+...|.. .+++++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4566777777777666522 222 555555556666677777777665544445556666655 6777777777
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 005856 574 LDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~ 617 (673)
++++.+.+ ++..+..++.+|.. .+++++|+++++++.+.+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777764 34556677777777 7788888888888777753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=80.63 Aligned_cols=118 Identities=9% Similarity=-0.055 Sum_probs=84.7
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.+...|++++|++.|+.+.+.+ |.+..++..+..++.+.|++++|...+++..+..+. +...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 4556788888888888888876 667888888888888888888888888888776543 6777778888888888888
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKL--ILRRGRYMMAKRYFN 150 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 150 (673)
+|...|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877754 2334445555444 667777777777776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=9e-06 Score=64.03 Aligned_cols=90 Identities=16% Similarity=-0.017 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHHHHhcCCCC--CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCI--IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
..|++++|+..++++++.++. .+...+..++.+|...|++++|++.++++++.. +.+...+..++.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 468999999999999997521 235677899999999999999999999999875 34577788899999999999999
Q ss_pred HHHHHHHHhhhcc
Q 005856 641 DILSRMIRGEMSR 653 (673)
Q Consensus 641 ~~~~~~~~~~~~~ 653 (673)
....+......+.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7776666655543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=75.05 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=28.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444555555555555555444332 344444444455555555555554444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.8e-05 Score=75.51 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHhccCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 493 SLFEDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+...|++++|..++++.++. |.. | ...+++.++.+|...|++++|..++++.++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345566666666666666543 111 1 123455666666666666666666665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.8e-05 Score=75.53 Aligned_cols=88 Identities=17% Similarity=0.043 Sum_probs=44.0
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHH
Q 005856 459 YLRKGEPADAKTALDSMIED---GHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-EN-LDLVAK 524 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~ 524 (673)
+...|++++|..++++.++. -+.|+ ..+++.+...|...|++++|..+++++++. |.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666666666655432 11111 234555566666666666666666665432 211 11 223445
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 005856 525 ILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
|+..|...|++++|..++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555554433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00055 Score=70.35 Aligned_cols=134 Identities=7% Similarity=-0.034 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK----------LNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 104 (673)
..++|++.++.++..+ |.+..+|+.-..++...|+ ++++...++.+.+.+++ +..+|..-.-.+.+.
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4556777787777776 6667777776666666665 66666666666665443 566666666666666
Q ss_pred C--CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005856 105 G--IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG-RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (673)
Q Consensus 105 ~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (673)
+ ++++++..++++.+.. +.+..+|+....++.+.| .++++++.++++++.. +-+...|+.....+..
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 6 5566666666666654 345556666666666666 6666666666665553 2255556555544443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.5e-05 Score=74.87 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.|..+..+|.+.|++++|+..+++.++ ..|+ +..++.++...|++++|+..|+++++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455555555555555555555554 2333 2234444445555555555555555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0002 Score=58.09 Aligned_cols=111 Identities=8% Similarity=-0.161 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEA 538 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 538 (673)
+++++|...|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777765 23222 5555666667777888888877764 55666777777776 6788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCC
Q 005856 539 LGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 581 (673)
++.+++..+.+..+....+...|.. .+++++|..+++++.+.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888887776655555667777766 778888888888888775
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=70.90 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=60.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCC--------------CCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC
Q 005856 25 LVYNVLHGAKNSEHALQFFRWVERAGL--------------FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD 90 (673)
Q Consensus 25 ~~~~~l~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 90 (673)
.+...+...|+++.|+..|+.+++... .+....+|..+..++.+.|++++|+..+++.++.... +
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~ 306 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-N 306 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-C
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-h
Confidence 344577788888888888888876210 0223344555555555555555555555555544322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH
Q 005856 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM 143 (673)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 143 (673)
...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554432 123333444444444333333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=60.23 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..++..+...|++++|++.+++.++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~ 32 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLIT 32 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0002 Score=55.89 Aligned_cols=76 Identities=16% Similarity=0.057 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 537 EALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 537 ~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
+|++.+++.++ ..|+ +..++..+...|++++|+..+++++..++. ....|..++.+|...|++++|+..++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666776666 4444 334566666777778887777777776543 3455667777777778888877777776
Q ss_pred HHc
Q 005856 613 MEK 615 (673)
Q Consensus 613 ~~~ 615 (673)
+..
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00021 Score=55.25 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=68.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----HHHHHHHHH
Q 005856 555 DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-D----WKSSDKLIA 629 (673)
Q Consensus 555 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~ 629 (673)
..++..+...|++++|+..++++++..+. +...+..++.++.+.|++++|++.+++++...... + ...+..+..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 34677788999999999999999998754 56778899999999999999999999999864322 1 455566777
Q ss_pred HHHhcCCcchHH
Q 005856 630 GLNQEGNTKQAD 641 (673)
Q Consensus 630 ~~~~~g~~~~a~ 641 (673)
++...|+.++|.
T Consensus 87 ~~~~~~~~~~a~ 98 (111)
T 2l6j_A 87 AQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHCCCCCS
T ss_pred HHHHHHhHhhhH
Confidence 777777777663
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00065 Score=50.03 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (673)
++..+...|++++|+..++++++..+. +...+..++.++.+.|++++|++.+++++... +.+...+..+..++..
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 344455566666666666666655432 34455567777777777777777777776653 2234444455555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00043 Score=53.97 Aligned_cols=80 Identities=6% Similarity=-0.062 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 38 HALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIM 117 (673)
Q Consensus 38 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 117 (673)
.|+..|+.+.+.+ |.+...+..+..++...|++++|...|+..++..+. +...+..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788887766 677888888888888888888888888888776543 5777788888888888888888888887
Q ss_pred HHc
Q 005856 118 KQL 120 (673)
Q Consensus 118 ~~~ 120 (673)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00025 Score=53.57 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.++..+...|++++|+..++++++.+|. ....|..++.+|...|++++|++.++++++
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555566667777777777777766544 344566677777777777777777777664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00018 Score=58.48 Aligned_cols=86 Identities=8% Similarity=-0.027 Sum_probs=62.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLN----------HARCILLDMPKKGVQWDEDMFEVLIESY 101 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~li~~~ 101 (673)
+.+.+++|++.++.+.+.+ |.+..+|..+..++...++++ +|+..|++.++.++. +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4567899999999999987 789999998988988887754 777777777666543 566666677776
Q ss_pred HhcC-----------CHHHHHHHHHHHHHc
Q 005856 102 GKKG-----------IVQESVKIFDIMKQL 120 (673)
Q Consensus 102 ~~~~-----------~~~~a~~~~~~~~~~ 120 (673)
...| ++++|...|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6553 566666666666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00045 Score=56.14 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=69.5
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD----------SAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
.+.+.+++|...++...+..|.++..|+.+..++...++++ +|+..|++..+.+.. +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 35567889999999999999999999999999988887654 788888887775322 5667777777777
Q ss_pred hcC-----------ChHHHHHHHHHHHHcCCCCchhhHHH
Q 005856 461 RKG-----------EPADAKTALDSMIEDGHSPASSLFRS 489 (673)
Q Consensus 461 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 489 (673)
..| ++++|+..|++.++. .|+...|..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 654 566666666666653 355444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0017 Score=47.64 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
..+..+...+...|++++|...+++..+..+.++.++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455556666666777777777766666666666666666666666666666666666665542 123444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0017 Score=48.89 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
..+..+...+...|++++|+..|+++++.++. +...|..+..+|...|++++|++.+++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444555555555555555544333 33344445555555555555555554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00043 Score=52.15 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLD-LVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..+...|++++|...++++++..+. +.. .+..++.+|...|++++|++.+++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445556666666666666655433 344 555556666666666666666666555
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0014 Score=64.27 Aligned_cols=84 Identities=12% Similarity=-0.067 Sum_probs=44.0
Q ss_pred cCCCHHHHHHHHHHHHh---CCCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcC-----CCCCC--hHhHHHHH
Q 005856 531 MRGHVEEALGRIDLMMQ---SGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGR-----DCIID--LASYEKVL 593 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~---~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--~~~~~~l~ 593 (673)
..|++++|+.++++.++ .-+.|+ ...++.+|...|++++|+.+++++++. |+... ...|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34566666666665554 122222 233455555566666666666665532 22211 33455666
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 005856 594 DALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+|...|++++|+..++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 666666666666666666553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0022 Score=62.96 Aligned_cols=84 Identities=14% Similarity=0.004 Sum_probs=43.1
Q ss_pred ccCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----C-CCCCC----HHHHH
Q 005856 496 EDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQ-----S-GSVPN----FDSLL 558 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~~~p~----~~~~~ 558 (673)
..|++++|..++++.++. |.. | ...+++.++.+|...|++++|+.++++.++ . +..|+ +..++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 345566666666655542 111 1 123455566666666666666666655553 1 12233 23355
Q ss_pred HHHHccCChHHHHHHHHHHhc
Q 005856 559 SVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~ 579 (673)
.+|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555556666666666665544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.019 Score=51.49 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHc-----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh-cCCh
Q 005856 535 VEEALGRIDLMMQSGSVPNF------DSLLSVLSE-----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-AGKT 602 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~~------~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~ 602 (673)
...|...+++.++ +.|++ ..++..|.. -|+.+.|.++|+++++.+|..+..++..+++.|+. .|++
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4777788888888 77773 335556665 48999999999999998775446666678888888 4889
Q ss_pred HHHHHHHHHHHHcCCC--CCHHH
Q 005856 603 LNAYSILFKIMEKGGV--TDWKS 623 (673)
Q Consensus 603 ~~A~~~~~~~~~~~~~--~~~~~ 623 (673)
++|.+.+++++.-+.. |++..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH
Confidence 9999999999887655 55543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.021 Score=53.63 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=18.7
Q ss_pred CCCCHHhHHHHHHHHHh--c---CChhHHHHHHHHHHhC
Q 005856 410 GVLDPVAFNNLIRGHSK--E---GNPDSAFEIVKIMGRR 443 (673)
Q Consensus 410 ~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~ 443 (673)
.+.++..|...+++... . .+..+|..+|+++.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l 228 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 35566666666554432 2 2235666677766664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0077 Score=59.26 Aligned_cols=87 Identities=15% Similarity=-0.028 Sum_probs=56.5
Q ss_pred HHHcCCCHHHHHHHHHHHHhC---CCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcC-----CCCCC--hHhHH
Q 005856 528 ALLMRGHVEEALGRIDLMMQS---GSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGR-----DCIID--LASYE 590 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~---~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--~~~~~ 590 (673)
.+...|++++|+.++++.++. -+.|+ ...++.+|...|++++|+.++++++.. |+... ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777777766652 12233 234555666677777777777766642 22211 45567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 005856 591 KVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 591 ~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.|+.+|...|++++|+..++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888888775
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0046 Score=60.87 Aligned_cols=93 Identities=16% Similarity=-0.042 Sum_probs=72.2
Q ss_pred HHHHccCChHHHHHHHHHHhcCC---CCCC----hHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CC-CCHHHH
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRD---CIID----LASYEKVLDALLAAGKTLNAYSILFKIMEK-----G-GV-TDWKSS 624 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~-----~-~~-~~~~~~ 624 (673)
..+...|++++|+.+++++++.. ..++ ..+++.++.+|...|++++|+.++++++.- | .. .....+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34557899999999999998642 2222 456789999999999999999999998862 1 12 235677
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 625 DKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+.|...|...|++++|..+.++..+.-
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 789999999999999987766666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0056 Score=45.79 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=42.8
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLA-SYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+..+...|++++|+..++++++..+. +.. .+..++.+|...|++++|++.++++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445566777888888888877776543 344 66677888888888888888888877754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.025 Score=53.20 Aligned_cols=48 Identities=6% Similarity=-0.087 Sum_probs=34.5
Q ss_pred CchhhHHHHHHHHH--cc---CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHH
Q 005856 378 MEASSYNPMIQHLC--HN---GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (673)
Q Consensus 378 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (673)
.+...|...+.+.. .. ....+|..+|++..+..|.....+..+..+|.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35566776665543 22 34588999999999998888888877666665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.78 E-value=2e-07 Score=88.34 Aligned_cols=264 Identities=11% Similarity=0.118 Sum_probs=159.6
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005856 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204 (673)
Q Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (673)
.+..|..|..+....++..+|++-|-+. -|+..|..++.+..+.|.+++-..++....+..- +...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3456777777777777777776544321 2455677778888788888887777776665533 3344456777
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 205 GYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE 284 (673)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 284 (673)
+|++.++..+-++++ -.||..-...+..-|...|.++.|.-+|..+.. |..+...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 888877766544432 135666666777777777777777666654432 2334445566677666
Q ss_pred HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (673)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (673)
|.+.-+ ..+++.+|..+..+|...+++..|.-.--.++-. ++ ....++..|-..|-+++.+.+++..+
T Consensus 189 AVdaAr-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 189 AVDGAR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp STTTTT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 554322 2347778888888888888887766554444321 22 23345666778888888888888774
Q ss_pred HchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CC-------CHHhHHHHHHHHHhcCChhHHH
Q 005856 365 EKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VL-------DPVAFNNLIRGHSKEGNPDSAF 434 (673)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~-------~~~~~~~l~~~~~~~~~~~~A~ 434 (673)
.. -+.....|+-|.-.|++- ++++-.+.++.....- .| ....|..++-.|.+-.+++.|.
T Consensus 257 gl---------ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GL---------ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TS---------TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC---------CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 21 123555677777777664 3444444444432221 11 2334556666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.01 Score=47.63 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDG---RVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
.+.+.|.+....+. ++..+...+..++++++ +.++++.+|+...+.+ +.-+...+..+.-++.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444554444343 55555556666666666 5557777777777764 2113455566777777777777777777
Q ss_pred HHHHhCCCCCCH
Q 005856 543 DLMMQSGSVPNF 554 (673)
Q Consensus 543 ~~~~~~~~~p~~ 554 (673)
+.+++ ..|++
T Consensus 95 ~~lL~--ieP~n 104 (152)
T 1pc2_A 95 RGLLQ--TEPQN 104 (152)
T ss_dssp HHHHH--HCTTC
T ss_pred HHHHh--cCCCC
Confidence 77777 66664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.014 Score=42.91 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.++|..++++.++.++. +...+..+...+.+.|++++|+..|+++++
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35555555555554443 444444455555555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.084 Score=57.51 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=21.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3345555555443221 23445555555555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.18 Score=54.82 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=10.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQ 405 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~ 405 (673)
.|..+...+.+.++++.|.+.|.+
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.016 Score=46.46 Aligned_cols=81 Identities=9% Similarity=-0.083 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHccC---ChHHHHHHHHHHhcCC-CCCChHhHHHHHHHHHhcCChHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN---FDSLLSVLSEKG---KTIAAVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYS 607 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~ 607 (673)
...+.+-|.+..+.+. ++ ...+.+++.+.. +.++++.+++..++.+ |......+..++-++++.|+|++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4555666665555433 34 345778888877 6679999999888875 21234555678888999999999999
Q ss_pred HHHHHHHcC
Q 005856 608 ILFKIMEKG 616 (673)
Q Consensus 608 ~~~~~~~~~ 616 (673)
.++++++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999988764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.031 Score=42.12 Aligned_cols=69 Identities=9% Similarity=0.120 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKG------VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.....+...+...|+++.|..+|+.+.+.. ..+....+..+..++.+.|++++|+.+++++.+ ..|+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 334455666666777777777777766541 112455666777777777777777777777776 556543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.023 Score=42.84 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=48.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhcCC-----C-CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRD-----C-IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
...++..+...|++..|...++.+++.. . ......+..++.++.+.|++++|+..++++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4567778888899999999988888642 1 1235667788888889999999999988888653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.13 Score=46.25 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC-CChH
Q 005856 143 MMAKRYFNKMLSEGIEPT---RHTYNVMLWGFFLS-----LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF-KKMD 213 (673)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~ 213 (673)
..|..++++.++. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4455555555543 233 33555555555552 66666666666666553322345555555555553 6666
Q ss_pred HHHHHHHHHHHCC
Q 005856 214 EAEKLFAEMKEKN 226 (673)
Q Consensus 214 ~a~~~~~~~~~~~ 226 (673)
.+.+.+++.....
T Consensus 258 ~a~~~L~kAL~a~ 270 (301)
T 3u64_A 258 GFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 6666666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.048 Score=39.94 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 90 DEDMFEVLIESYGKKGI---VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
++..+..+..++...++ .++|..++++..+.. +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433322 455555555555543 334444555555555555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.37 Score=39.74 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=58.5
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 005856 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (673)
Q Consensus 22 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 101 (673)
++..-+......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|....+ +..+.-.|
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHH
Confidence 4445555666666666666665543 2455666666666666666666666665543 22333344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK 151 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (673)
.-.|+.+....+-+.....| -++.....+...|+++++.++|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555554444443332 234444444555666666666544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.95 E-value=2.3 Score=45.61 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=71.0
Q ss_pred HHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCChH
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY--ICLIESYLRKGEPA 466 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 466 (673)
.+.-.|+.+....++..+.+....+..-...+.-++...|+.+.+..+.+.+... ..|....- .++..+|+..|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 3445566666666666655443222222233333344566777777776666653 11111111 12334455666666
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV-EEALGRIDLM 545 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 545 (673)
....++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+. ..|.+..-..++-+....|+. .+|++++..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5555666666531 122222222222333445544455555444332 223333323333333444443 4566666666
Q ss_pred H
Q 005856 546 M 546 (673)
Q Consensus 546 ~ 546 (673)
.
T Consensus 656 ~ 656 (963)
T 4ady_A 656 T 656 (963)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.27 Score=40.52 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=62.8
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (673)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.. |+..+.-.|.-.|+.+.-.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHH
Confidence 345567777777766654 256677777777777777777777766543 35555555666677666666
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
+.+.+...+ .++.....+.-.|+++++++++.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666555443 233444556667777777777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.19 Score=39.62 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNP------DSAFEIVKIMGRRGVPRDAD-AYICLIE------SYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~A~~~~~~~~~ 477 (673)
+.|+.+|-..+...-+.|++ ++.+++|+++... ++|+.. .|...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44556666666666555666 5666666665553 444321 1111111 11233566666666666654
Q ss_pred cCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 005856 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE 517 (673)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 517 (673)
..-.- ...|.....--.+.|+...|.+++.+.+..+++|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 31111 3334333343445666666666666666665553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.085 Score=40.60 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT---ASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
.+.+.+......|. ++..+-..+..++.++.+... ++.+++.+...+ +.-.......++-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444433333 455554455556666655544 666666665543 1113344455666677777777777777
Q ss_pred HHHHhCCCCCCH
Q 005856 543 DLMMQSGSVPNF 554 (673)
Q Consensus 543 ~~~~~~~~~p~~ 554 (673)
+.+++ ..|++
T Consensus 98 ~~lL~--~eP~n 107 (126)
T 1nzn_A 98 RGLLQ--TEPQN 107 (126)
T ss_dssp HHHHH--HCTTC
T ss_pred HHHHH--hCCCC
Confidence 77777 66653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.12 Score=40.80 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCHHhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCchh-hHHHHHH------HHhccCCHHHHHHHHHHHHHc
Q 005856 447 RDADAYICLIESYLRKGEP------ADAKTALDSMIEDGHSPASS-LFRSVME------SLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~ 513 (673)
.|..+|-..+....+.|++ ++..++|++... .++|+.. .|...+. .+...+|.++|..+|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4778888888888888888 788888888876 3555431 1111111 123346777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 514 GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
+-+. ...|...+..-.+.|+.+.|.+++.+.+..+.+|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3332 55566666666677777777777777776554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.11 Score=39.94 Aligned_cols=61 Identities=8% Similarity=-0.098 Sum_probs=41.3
Q ss_pred HHHHHHHccCChHH---HHHHHHHHhcCC-CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 SLLSVLSEKGKTIA---AVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~~~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+++++.+.....+ ++.+++..+..+ +.........++-++++.|+|.+|.+.++.+++..
T Consensus 40 ~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 40 EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45666666554444 777777666653 11123444578888999999999999999988764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.53 E-value=6.2 Score=42.37 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=128.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC--------CCHHhH
Q 005856 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--------LDPVAF 417 (673)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~ 417 (673)
+....|+.++++.++...+.. .....+....-..+.-+....|..+.+..++........ +....-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~------~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPG------SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTT------SCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHH
Confidence 455678888887777665310 001112222223333344555555567777766654321 111122
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH--H
Q 005856 418 NNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYI--CLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM--E 492 (673)
Q Consensus 418 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~ 492 (673)
.++.-+++..|. -+++.+.+..+....- +...... .+...+.-.|+.+-...++..+.+. .+......+. -
T Consensus 457 AaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgL 532 (963)
T 4ady_A 457 ASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHH
Confidence 333333333332 2355566655554311 1111122 2333344667777777777776653 2222333333 3
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHccCCh
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPNF---DSLLSVLSEKGKT 567 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~~~~~g~~ 567 (673)
++...|+.+.+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..+. ..+.-++...|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 444678888888887777653 22222221 234456667788766666888777631 1111 1122223345666
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh-HHHHHHHHHHHHcC
Q 005856 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT-LNAYSILFKIMEKG 616 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~A~~~~~~~~~~~ 616 (673)
+.+..+++.....+ +|....-..++-++...|+. .+|+..+.++....
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 66666666444432 33333223444555555554 67888888887543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.19 E-value=6.4e-05 Score=71.66 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=58.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 491 (673)
.++.||..+-.+|...+.+.-|.-.--.+.-+ | .....++..|-..|-+++-+.+++..... -.....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 45566777777777776666654443333321 1 12223455566667777766666665521 123444555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 492 ESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
-.|++- ++++-++.++....+ +++ .++++|.+.--|.+++-++.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHh
Confidence 555443 344444444433222 221 24455555555555554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=1.7 Score=33.64 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=39.0
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 445 (673)
.....++.....|..+.-.+++..+....++++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4444555555666666666666665544466666666666666666666666666666666654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.84 E-value=5.5 Score=39.17 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH----Hh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH----SK 426 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 426 (673)
|+++.|++.+-.+.+... ..............++..|...++++...+.+..+.+...........+++.+ ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r---~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR---QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS---SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh---hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 567777776655544321 23334445667788889999999999988887776655433333334444333 22
Q ss_pred cCChhHH--HHHHHHHHh--CC-CCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----hhhHHHHHHH
Q 005856 427 EGNPDSA--FEIVKIMGR--RG-VPR---DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMES 493 (673)
Q Consensus 427 ~~~~~~A--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~ 493 (673)
....+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+...-...+ ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3332221 111111111 01 111 123345677888888999999999988763311121 2245555677
Q ss_pred HhccCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 494 LFEDGRVQTASRVMKSMVEK----GVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|...+++..|..+++++... ...|+ ...+...+..+...+++.+|-+.|.++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88889999998888887532 22222 13345566667778888888877766654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=2 Score=33.66 Aligned_cols=73 Identities=7% Similarity=0.030 Sum_probs=48.8
Q ss_pred CCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 481 SPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.|+..+--.+..++.++.+ ..+++.+++.+...++.-.......++-++.+.|++++|.++.+.+++ ..|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 3555555555556665554 446777777777765543455666677788888888888888888888 777743
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.35 E-value=1.1 Score=34.59 Aligned_cols=73 Identities=7% Similarity=0.030 Sum_probs=46.6
Q ss_pred CCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 481 SPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.|+..+--.+..++.++.+ ..+++.+++.+.+.++.-....+..++-++.+.|++++|.+..+.+++ ..|++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 3455554445555555544 345777777777665433455666677777788888888888887777 667643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.91 E-value=1.1 Score=46.83 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=45.9
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
.|...|+++.|+.+.++++...|. ++.+|..|+.+|.+.|+++.|+-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344689999999999999997543 79999999999999999999999988875
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=11 Score=38.86 Aligned_cols=447 Identities=10% Similarity=0.016 Sum_probs=207.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 005856 129 YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR 208 (673)
Q Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 208 (673)
|.....+ .+.|++..+..+...+....+. .-..|..+.... ......++..++.+.... +.....-...+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHh
Confidence 4444443 3457777666665554322111 111222222111 222445554444443322 2222334455566666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+.....++..+.+.|.
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~------- 151 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK------- 151 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC-------
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC-------
Confidence 7777666554432 12344444445566666777666666666554443 2222333344444333332
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH-YGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
.. ...++.. +......|+...|..+...+ +++... ...++..+ .+...+.......
T Consensus 152 ---------lt-~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~---~~p~~~~~~~~~~---- 208 (618)
T 1qsa_A 152 ---------QD-PLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLA---NNPNTVLTFARTT---- 208 (618)
T ss_dssp ---------SC-HHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHH---HCGGGHHHHHHHS----
T ss_pred ---------CC-HHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHH---hChHhHHHHHhcc----
Confidence 21 1122222 23344556666666554432 222211 12222222 1223333222211
Q ss_pred hccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHH----HHHhcCChhHHHHHHHHHHhC
Q 005856 368 IILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR----GHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~ 443 (673)
... ..+...+...+.-..+ .+.+.|...+....+....+......+-. .....+...++...+......
T Consensus 209 ----~~~--~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 209 ----GAT--DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp ----CCC--HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred ----CCC--hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 000 0011112222223333 37788888888876655334443333322 233334345566666655443
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
. .+.......+....+.|+++.|...|..|..... ....-...+..++...|+.++|..+|..+.+. . ..|.
T Consensus 282 ~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg 353 (618)
T 1qsa_A 282 S--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYP 353 (618)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHH
T ss_pred C--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHH
Confidence 2 3333344444555567888888888887754211 12333445566777788888888888888652 1 2233
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---------HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPN---------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 594 (673)
.+.. .+.|..-. . ......+. ....+..+...|...+|...+...... .+......++.
T Consensus 354 ~lAa--~~Lg~~~~-~------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~ 421 (618)
T 1qsa_A 354 MVAA--QRIGEEYE-L------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLAR 421 (618)
T ss_dssp HHHH--HHTTCCCC-C------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred HHHH--HHcCCCCC-C------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHH
Confidence 2221 22332100 0 00001111 112344566788888888888766653 23333345666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCcchHHHH
Q 005856 595 ALLAAGKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADIL 643 (673)
Q Consensus 595 ~l~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (673)
.....|.++.++....+....... .-+..+..++..+.+.-..+.+...
T Consensus 422 ~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~ 472 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAM 472 (618)
T ss_dssp HHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHH
Confidence 667788888877665432211100 0011234466666655556655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.59 Score=48.92 Aligned_cols=49 Identities=16% Similarity=-0.050 Sum_probs=39.5
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005856 585 DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 585 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (673)
+..-|..||....+.+.++||.+.|+..+... .++.++..|+..|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcC
Confidence 34557788888888999999999999988753 57888888998888776
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.34 E-value=1.1 Score=36.36 Aligned_cols=130 Identities=11% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCCCchh--hHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 005856 479 GHSPASS--LFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-------LDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 479 ~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (673)
|+.|... ++..-+..+...|.++.|+-+.+.+... +.+|+ ..++..++.++...|++.+|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444433 3444566778888999988888876654 22223 134556778888899999999988886651
Q ss_pred -CCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 549 -GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 549 -~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
..-|..........-...... ..+...+.+.-..++.+|.+.|++++|+.+++.+..+.-
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHCC-----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred HHHHhcCCCccccccccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 111111100000000000000 001122344545799999999999999999998776543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.03 E-value=3.4 Score=31.97 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005856 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (673)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 297 (673)
......+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555556666655555554322 245555556666666666666666666666555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.81 Score=37.02 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+.-..+..||...|++++|+.+++.+-.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3434466666677777777766665433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.36 E-value=1.7 Score=48.92 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENL----DLVAKILEALLMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (673)
|..++..+.+.|.++.+.++-+.+++.....+. ..|..+...+...|++++|...+-.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 445555566666666666666655554221121 24556666666666666666666555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.94 E-value=2.2 Score=32.97 Aligned_cols=61 Identities=11% Similarity=-0.076 Sum_probs=44.3
Q ss_pred HHHHHHHccC---ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 SLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+++++.+.. +..+++.+++..++.++......+..++-++++.|+|.+|.+.++.+++..
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4666777654 446788888887776543335555678888889999999999988888754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.63 E-value=5 Score=45.21 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT----RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMI 203 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (673)
-|..++..+.+.+.++.+.++-...++...+-+ ...|..+.+.+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 456677777777777777776665544321111 12466777777778888888777777765533 234444555
Q ss_pred HHHHcC------------CChHHHHHHHHHHHHCC-CCCCHHHH-HHHHHHHHhcCCHHHHHH-HHHHHH
Q 005856 204 NGYNRF------------KKMDEAEKLFAEMKEKN-IEPTVISY-TTMIKGYVAVERADDALR-IFDEMK 258 (673)
Q Consensus 204 ~~~~~~------------~~~~~a~~~~~~~~~~~-~~~~~~~~-~~ll~~~~~~~~~~~a~~-~~~~~~ 258 (673)
..++.. |..++..+++....+.. ...+...| ..|=.-+...|++..|-. +|+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 444433 44556666665433211 00111234 444444556677765544 445443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.03 E-value=8.9 Score=33.98 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (673)
.+.+.|+.+++++....-++..+. |...-..++..++-.|+|++|.+-++...+ ..|+.......|... =.|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~l---I~aE~ 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHL---VKAAQ 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHH---HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHH---HHHHH
Confidence 456677788888777777777655 666667777777888888888877777776 666655444444221 11222
Q ss_pred HHHHHhcCCCCC-----ChHhHHHHHHHHHh--cCChHHHHHHHHHHHHc
Q 005856 573 LLDFCLGRDCII-----DLASYEKVLDALLA--AGKTLNAYSILFKIMEK 615 (673)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~l~~~l~~--~g~~~~A~~~~~~~~~~ 615 (673)
.-+....-+-.| .......++.++.. .|+.++|.+.-.++.+.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222221111 23333445555443 57777777777777654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.01 E-value=6.9 Score=37.39 Aligned_cols=165 Identities=8% Similarity=0.066 Sum_probs=99.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhH-
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRD---ADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLF- 487 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~- 487 (673)
......|...|.+.|+.++..+++...... +.-|- ......+++.+.... ..+.-.++..+.++... .+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 356778889999999999988888877542 11122 234556777776543 33444444444443110 122333
Q ss_pred -----HHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--C--CCCC
Q 005856 488 -----RSVMESLFEDGRVQTASRVMKSMVEK--GVKEN---LDLVAKILEALLMRGHVEEALGRIDLMMQS--G--SVPN 553 (673)
Q Consensus 488 -----~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~p~ 553 (673)
..++..|...|++.+|.+++.++.+. ..... .+.+-.-+..|...|++.++...+...... . .+|.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25667788888888888888888775 22211 233445566777888888888887766542 1 2232
Q ss_pred HHH-----HHHHHH-ccCChHHHHHHHHHHhc
Q 005856 554 FDS-----LLSVLS-EKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 554 ~~~-----~~~~~~-~~g~~~~A~~~~~~~~~ 579 (673)
... -+-.+. ..+++++|...|-.+.+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 222 222334 67888888888766653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.85 E-value=6 Score=31.03 Aligned_cols=62 Identities=11% Similarity=-0.099 Sum_probs=46.9
Q ss_pred HHHHHHHHccC---ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 555 DSLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 555 ~~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+.+++.+.. +..+++.+++..+..++.........++-++++.|+|.+|.++++.+++..
T Consensus 43 F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 43 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34777777654 456788888888876554445555678899999999999999999988764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=2.1 Score=41.24 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHHHH
Q 005856 129 YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS-----RGISLDVVTYNTM 202 (673)
Q Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 202 (673)
...++..+...|++.++...+..+.... +-+...|..++.++.+.|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456677778888888888887776652 44777888888888888888888888877653 4778877665443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=26 Score=35.96 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
.-...+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+..+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 334455555666666655554332 12345555555555666666655555555444333 223334444544444
Q ss_pred HcC
Q 005856 138 RRG 140 (673)
Q Consensus 138 ~~g 140 (673)
+.|
T Consensus 148 ~~g 150 (618)
T 1qsa_A 148 ASG 150 (618)
T ss_dssp HTT
T ss_pred HCC
Confidence 443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=3.2 Score=40.01 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHh
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADA 451 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 451 (673)
++..+...|++..+...+..+....|.+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344445555666666555555555555555566666666666666666655555432 255555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.04 E-value=9.1 Score=27.79 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005856 176 KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (673)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (673)
+.-+..+-++.+....+.|+..+..+.+++|.+.+++..|.++|+.++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666666666666666666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.69 E-value=35 Score=33.43 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=65.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCC
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE-----AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (673)
....|...+...|++.+|..++..+...-...+ ...+...++.|...+++..|..++.++...... ....|
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~----~~~~~ 214 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK----NPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----SSCCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc----cCCcH
Confidence 445677788888888888888888754211111 234556677888999999999998887432211 11112
Q ss_pred c--hhhHHHHHHHHHccCCHhHHHHHHHHHHHc
Q 005856 379 E--ASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409 (673)
Q Consensus 379 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (673)
+ ...+...+..+...+++..|...|..+...
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 1 234556666777788888887777766543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.53 E-value=16 Score=32.45 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=64.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHV 535 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 535 (673)
...+.|++++|+..+..-++.. +.|...-..++..+|-.|++++|.+-++...+..+.. ....|..++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3456777777777777777643 3455555566777777888888888777777764431 12233333322
Q ss_pred HHHHHHHHHHHhCCCCCC--------HHHHHHHHH--ccCChHHHHHHHHHHhcCC
Q 005856 536 EEALGRIDLMMQSGSVPN--------FDSLLSVLS--EKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~--------~~~~~~~~~--~~g~~~~A~~~~~~~~~~~ 581 (673)
...=.++...+..|. ...++.++. ..|+.++|..+-..+.+.-
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 122223333333332 223444444 4688888888877776653
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.59 E-value=5.2 Score=33.61 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
..++.++|..|...++--. +..++..+...|++++|..+++.+++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4445555555544443333 2233334444555555555555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.16 E-value=13 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=18.2
Q ss_pred CCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 375 TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
...|++....+.+.+|.+.+++..|.++++.++...
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 334455555555555555555555555555544443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.87 E-value=17 Score=28.01 Aligned_cols=48 Identities=8% Similarity=0.148 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005856 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (673)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (673)
-+..+-++.+...++.|+..+....+.+|.+.+|+..|.++|+-++.+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 345555666666666677777777777777777777777777766643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 673 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 55/409 (13%), Positives = 122/409 (29%), Gaps = 36/409 (8%)
Query: 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSL-KLETAIRFFEDMKSRGISLD 195
+ G + A+R+ ++ EP ++L +L+ + F I +
Sbjct: 10 YQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFST----LAIKQN 63
Query: 196 ---VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252
Y+ + N Y ++ EA + + + A +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312
++ + + +++ ++ + +V LG
Sbjct: 124 YVSALQYNPDLYCVRSDLG-----NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 313 C-KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR 371
G + A + + L P Y L +A ++DRA+ + +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---- 233
Query: 372 PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431
A + + G A +R+ ++ P A+ NL ++G+
Sbjct: 234 -----PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491
A + R P AD+ L +G +A +E A++ +
Sbjct: 289 EAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN-LA 346
Query: 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
L + G++Q A KE + + +A G+ + +
Sbjct: 347 SVLQQQGKLQEA--------LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 47/402 (11%), Positives = 121/402 (30%), Gaps = 20/402 (4%)
Query: 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGV 87
+ + A + E A + + R + L + I + +L+ + +
Sbjct: 7 HREYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFS----TLAI 60
Query: 88 QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147
+ + + E + + + + + + M
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYN 207
+ + P + L +L + V ++ + +N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 208 RFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267
++ A F + + + +Y + D A+ + S +AV
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238
Query: 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327
+ L + G + R +E + P + L + G + A D
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387
+R PT A L + + A++L K +E + P+ A++++ +
Sbjct: 297 ALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----AAAHSNLA 346
Query: 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429
L G+ +A + +++ ++ A++N+ + +
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 673 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.38 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.67 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.39 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.38 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.91 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.76 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.65 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.0 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.77 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.08 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.9 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.99 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 80.01 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.7e-22 Score=196.16 Aligned_cols=379 Identities=16% Similarity=0.086 Sum_probs=254.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCC
Q 005856 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGH 317 (673)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (673)
...+.+.|++++|++.++++.+.. +-+...+..+..++...|++++|...++++++. .|.+..++..++.++.+.|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhcc
Confidence 344555566666666666665432 224455566666666666666666666666653 45466666666666666677
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHh
Q 005856 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTG 397 (673)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 397 (673)
+++|...+....... +.+..............+....+........... .................+...
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 152 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---------PDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHTTSCHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc---------cccccccccccccccccchhh
Confidence 777776666666543 2333333334444444444444444444432221 122233444455556667777
Q ss_pred HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
.+...+.......+.+..++..+...+...|++++|...++...+.. +-+...|..+...+...|++++|...+++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 231 (388)
T d1w3ba_ 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred hhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence 77777777777767777777888888888888888888887777643 23566777778888888888888888888776
Q ss_pred cCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----
Q 005856 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---- 553 (673)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---- 553 (673)
.. +.+...+..+...+...|++++|...|+++++..+. +...+..++.++...|++++|++.++.... ..|+
T Consensus 232 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 307 (388)
T d1w3ba_ 232 LS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADS 307 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred Hh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchh
Confidence 43 344556666777788888888888888888877554 567777788888888888888888887776 3343
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005856 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (673)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (673)
+..++..+...|++++|+..++++++..|. +...+..++.+|.+.|++++|++.++++++.. +....++..++.+|.+
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344666777888888888888888887654 45667788888888888888888888888753 3456777788888887
Q ss_pred cCC
Q 005856 634 EGN 636 (673)
Q Consensus 634 ~g~ 636 (673)
.|+
T Consensus 386 ~~D 388 (388)
T d1w3ba_ 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred cCC
Confidence 765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.1e-22 Score=194.84 Aligned_cols=384 Identities=15% Similarity=0.101 Sum_probs=257.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 005856 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (673)
Q Consensus 26 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 105 (673)
+.....+.|++++|++.|+.+++.+ |.++.++..++.++.+.|++++|...++.+++.++. +..++..+...|...|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 4456677888888888888888876 677888888888888888888888888888776543 6778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005856 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (673)
++++|...+....+.. +.+...+..........+....+........... .................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence 8888888888887754 3444445555555555566666655555554432 2334444455556667777777777777
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005856 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (673)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (673)
........ +...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|+..++.....+ +.+
T Consensus 160 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 76665322 56667777777778888888888888777643 2245667777777888888888888877776643 445
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 005856 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (673)
Q Consensus 266 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (673)
...+..+...+...|++++|...|+++++. .|.+..++..+...+...|++++|...++...... +.+...+..+..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 566666777777777777777777777764 45566677777777777777777777776665543 445555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHH
Q 005856 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (673)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (673)
.+...|++++|+..|+++++.. | -+..++..+..++...|++++|...|++..+..|.++.++..++.+|.
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~----p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVF----P-----EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC----T-----TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6666666666666666664321 1 123445555555556666666666666655555555555555555555
Q ss_pred hcCC
Q 005856 426 KEGN 429 (673)
Q Consensus 426 ~~~~ 429 (673)
+.||
T Consensus 385 ~~~D 388 (388)
T d1w3ba_ 385 EMQD 388 (388)
T ss_dssp HTCC
T ss_pred HcCC
Confidence 5443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.1e-14 Score=136.49 Aligned_cols=252 Identities=13% Similarity=0.106 Sum_probs=201.2
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 005856 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGE 464 (673)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 464 (673)
.....+.+.|++++|...|+++.+..|.++.+|..++.++...|++++|...++++.+.. +-+...|..+..+|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456678899999999999999999999999999999999999999999999999998754 2367889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhh----------------HHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 005856 465 PADAKTALDSMIEDGHSPASSL----------------FRSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKILE 527 (673)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 527 (673)
+++|.+.++++.... |+... ....+..+...+.+.+|...+.++++..+. ++...+..++.
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999988643 32111 011122334556788899999998887543 46778888999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH
Q 005856 528 ALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTL 603 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 603 (673)
.+...|++++|+..+++... ..|+ +..++.++...|++++|+..++++++.+|. ....|..++.+|.+.|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999887 4555 445788888999999999999999997654 5667889999999999999
Q ss_pred HHHHHHHHHHHcC-C---------CCCHHHHHHHHHHHHhcCCcchHHH
Q 005856 604 NAYSILFKIMEKG-G---------VTDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 604 ~A~~~~~~~~~~~-~---------~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
+|++.|+++++.. . ......+..+..++...|+.+.+..
T Consensus 258 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998731 1 1112344556667777777766643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.5e-13 Score=130.47 Aligned_cols=224 Identities=14% Similarity=0.015 Sum_probs=137.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--------------C
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP--------------R 447 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~ 447 (673)
+|..+..++...|+++.|...+.+..+..|.+...+..++.+|...|++++|.+.++.+...... .
T Consensus 55 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (323)
T d1fcha_ 55 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhc
Confidence 34444444444444444444444444444444444444444444444444444444444332100 0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005856 448 DADAYICLIESYLRKGEPADAKTALDSMIEDG-HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (673)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (673)
+.......+..+...+.+.+|...+.+..+.. -.++...+..+...+...|++++|+..+++++...+. +...|..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 213 (323)
T d1fcha_ 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLG 213 (323)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhh
Confidence 00011111223344456677888887776543 2234566777778888889999999999998887655 677888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC----------ChHhHHHH
Q 005856 527 EALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII----------DLASYEKV 592 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l 592 (673)
.+|...|++++|++.++++++ ..|+ +..++.++...|++++|+..|+++++..|.. ....|..+
T Consensus 214 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l 291 (323)
T d1fcha_ 214 ATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 291 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred hcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHH
Confidence 889999999999999998887 4565 3457778888999999999999888753322 12345666
Q ss_pred HHHHHhcCChHHHHHH
Q 005856 593 LDALLAAGKTLNAYSI 608 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~ 608 (673)
..++...|+.+.+...
T Consensus 292 ~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 292 RLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHTCGGGHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 7777777777665444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.1e-10 Score=106.88 Aligned_cols=226 Identities=10% Similarity=0.024 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (673)
..++.+...+.+.+.+++|+..++++++..|.+..+|+....++...| ++++|...++.+.+... -+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHH
Confidence 355666677888899999999999999999999999999999998876 58999999999988643 3788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-----
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH----- 534 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 534 (673)
.+.|++++|+..++++++.. +.+...|..+...+...|++++|+..++++++.++. +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 99999999999999999853 345788999999999999999999999999999776 77788877777766554
Q ss_pred -HHHHHHHHHHHHhCCCCCCHH----HHHHHHHccCChHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhc--CChHHHH
Q 005856 535 -VEEALGRIDLMMQSGSVPNFD----SLLSVLSEKGKTIAAVKLLDFCLGRDCIID-LASYEKVLDALLAA--GKTLNAY 606 (673)
Q Consensus 535 -~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~--g~~~~A~ 606 (673)
+++|++.+.++++ ..|+.. .+...+ .....+++...++++++..+.+. ...+..++..|... +..+.+.
T Consensus 201 ~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 201 VLEREVQYTLEMIK--LVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhHHhHHHHHHHHH--hCCCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6789999988887 566632 333343 34456888888888887665543 44556677766542 4444444
Q ss_pred HHHHHH
Q 005856 607 SILFKI 612 (673)
Q Consensus 607 ~~~~~~ 612 (673)
..++++
T Consensus 278 ~~~~ka 283 (315)
T d2h6fa1 278 DILNKA 283 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=6e-10 Score=106.87 Aligned_cols=294 Identities=11% Similarity=0.016 Sum_probs=181.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CC----CHHhH
Q 005856 344 IENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VL----DPVAF 417 (673)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~ 417 (673)
...+...|++++|+.++++.++.. +..........+..+..++...|++++|...++...+.. .+ ...++
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 344556666666666666665432 111111112345555666667777777777777665432 11 12345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----CCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----Cchhh
Q 005856 418 NNLIRGHSKEGNPDSAFEIVKIMGR----RGVPR---DADAYICLIESYLRKGEPADAKTALDSMIEDGHS----PASSL 486 (673)
Q Consensus 418 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~ 486 (673)
..+...+...|++..+...+..... ..... ....+..+...+...|+++.+...+......... .....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 5666777778888888877776543 11111 1234556667788888888888888887754221 12233
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------H
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEK--GVKEN----LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN------F 554 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~ 554 (673)
+......+...|++..+...+...... ..... ...+......+...|++++|...+++........+ .
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 444555667788888888888776654 11111 22345566677788999999998887765322222 2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhcC----CCCC-ChHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC----CCH
Q 005856 555 DSLLSVLSEKGKTIAAVKLLDFCLGR----DCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEK----GGV----TDW 621 (673)
Q Consensus 555 ~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~~----~~~ 621 (673)
..++.++...|++++|...+++++.. +..+ ....+..++.+|.+.|++++|.+.++++++. +.. ...
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 23566777889999999999887743 2222 2456778899999999999999999998763 111 112
Q ss_pred HHHHHHHHHHHhcCCcchHH
Q 005856 622 KSSDKLIAGLNQEGNTKQAD 641 (673)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~ 641 (673)
..+..++..+...++.++++
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhcCCChHHH
Confidence 33444666677778877774
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1e-09 Score=102.16 Aligned_cols=220 Identities=10% Similarity=0.057 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--------------ChHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 005856 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG--------------KLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (673)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 101 (673)
.+.+..+|++++... |.++..|...++.+...+ ..++|..+|++.++...+.+...|...+..+
T Consensus 32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456778899998875 778888877776554332 3466777777776654445666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG-FFLSLKLETA 180 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 180 (673)
.+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|++..+.++. +...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHH
Confidence 777777777777777776432223446777777777777777777777777665322 33333333322 2345677777
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEPT--VISYTTMIKGYVAVERADDALRIFDEM 257 (673)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (673)
..+|+.+.... +.+...|...+......|+++.|+.+|++..... ..|. ...|...+..-...|+.+.+..+++++
T Consensus 189 ~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777652 2256667777777777777777777777766542 2222 345666666666667777777777666
Q ss_pred Hh
Q 005856 258 KS 259 (673)
Q Consensus 258 ~~ 259 (673)
.+
T Consensus 268 ~~ 269 (308)
T d2onda1 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=2.8e-09 Score=102.10 Aligned_cols=265 Identities=15% Similarity=0.063 Sum_probs=192.3
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHcCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHH
Q 005856 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLD-----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYIC 454 (673)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ 454 (673)
.....+...|++++|..++++..+..+.+ ..++..+..+|...|++++|...++...+. +..+ ....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34556778999999999999998876443 246778889999999999999999987652 1111 1245666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCCc---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC----CCCHHHHH
Q 005856 455 LIESYLRKGEPADAKTALDSMIED----GHSPA---SSLFRSVMESLFEDGRVQTASRVMKSMVEKGV----KENLDLVA 523 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~ 523 (673)
+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+........ ......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 777888999999999998887632 11111 22445566778899999999999999887622 22345556
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC---hHhHHH
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQS----GSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID---LASYEK 591 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 591 (673)
.....+...|++.++...+.+.... +..+. .......+...|++++|...+++++...+..+ ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6777888899999999888766651 11111 12345556689999999999999888754433 344567
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEK----GGV-TDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
++.++...|++++|.+.+++++.. +.. .....+..++.+|...|++++|....+...+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999998752 222 2345666788999999999999765554433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=3.5e-09 Score=98.54 Aligned_cols=216 Identities=8% Similarity=0.021 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE--------------GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
+.+..+|+++....+.++..|...+..+... +..++|..+|++..+...+.+...|..++......
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4466677777777677777776655544322 23466777777777654444566777777777788
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHH
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGR 541 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 541 (673)
|+++.|..+++++++.........|...+..+.+.|+.+.|.++|+++++.++. +...|...+.. +...|+.+.|..+
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHH
Confidence 888888888888776432222345677777777778888888888887776544 33334333332 3345777778888
Q ss_pred HHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC-C--hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 542 IDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII-D--LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 542 ~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
++.+++ ..|+ +..++..+...|+++.|..+|++++...+.+ . ...|...+.--...|+.+.+.++++++.+
T Consensus 192 ~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 192 FELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH--hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877776 2333 3445556667778888888888777764322 1 23455555555567788887777777765
Q ss_pred c
Q 005856 615 K 615 (673)
Q Consensus 615 ~ 615 (673)
.
T Consensus 270 ~ 270 (308)
T d2onda1 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=3.6e-11 Score=114.11 Aligned_cols=256 Identities=8% Similarity=-0.110 Sum_probs=187.2
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----------EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
...+..++|+.+++++.+..|.+...|+.....+.. .|.+++|+.+++.+.+.+ +.+...|..+..++.
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 334455899999999999988888887665544433 344788999999988754 337778888877777
Q ss_pred hcC--ChHHHHHHHHHHHHcCCCCchhhHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 461 RKG--EPADAKTALDSMIEDGHSPASSLFR-SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 461 ~~~--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
..+ ++++|...+.++.+.. +++...+. .....+...|.+++|+..++.+++.++. +...|..+..++.+.|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHH
Confidence 765 4789999999998753 23444443 4446677889999999999999998776 78889999999999999888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
|...++...+ ..|........+...+..+++...+.+++...+.. ...+..++..+...|++.+|++.+.+.....
T Consensus 197 A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 272 (334)
T d1dcea1 197 SGPQGRLPEN--VLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP-LFRCELSVEKSTVLQSELESCKELQELEPEN- 272 (334)
T ss_dssp SSSCCSSCHH--HHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC-SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHhHH--hHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 7665554444 33444445555666777778888888887776543 3334467777778888888888888877654
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 618 VTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
+.....+..++.+|...|+.++|....+.+.+.++.
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 234566666888888888888888877777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.9e-09 Score=97.44 Aligned_cols=145 Identities=7% Similarity=0.048 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCccCHhhHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG-IVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (673)
++..+..++.+.+.+++|+.+++.+++.++. +..+|+....++...| ++++|+..++...+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 3444444444555555555555555554332 4444444444444433 3455555555554433 23344555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005856 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGY 206 (673)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 206 (673)
.+.|++++|+..++++.+.. +.+...|..+...+...|++++|...++.+.+.++. +...|+.+..++
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l 190 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVI 190 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHH
Confidence 55555555555555554432 224445555555555555555555555555544322 344444443333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=5.7e-09 Score=94.51 Aligned_cols=218 Identities=10% Similarity=-0.123 Sum_probs=146.6
Q ss_pred CHhHHHHHHHHHHHcCC----CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 005856 395 QTGKAEIFFRQLMKKGV----LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKT 470 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 470 (673)
+.+.++..++++..... ....++..++.+|.+.|++++|...|++..+.. +-++.+|..+..++.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34455555666655432 233477788899999999999999999998864 3377889999999999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 005856 471 ALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (673)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (673)
.|+++++.. +-+...+..+...+...|++++|...|++.++..+. +......+..++.+.+..+.+..+.........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999998753 234557778888889999999999999999888654 455444455555666666666655555555333
Q ss_pred CCCHHHHHHHHHccCC----hHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 551 VPNFDSLLSVLSEKGK----TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 551 ~p~~~~~~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+....+...+..... .+.+...+.......+. ....|..++..|...|++++|++.++++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3322223333322222 22222222211111111 13456678999999999999999999999764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=8.9e-10 Score=100.04 Aligned_cols=197 Identities=14% Similarity=-0.050 Sum_probs=139.7
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (673)
..++..+..+|.+.|++++|...|++..+..|.++.+++.++.+|...|++++|...|+++.+... .+..++..+..++
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHH
Confidence 346777788999999999999999999999999999999999999999999999999999998643 3567888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH----
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV---- 535 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 535 (673)
...|++++|...++..++.. +.+......+...+...+..+.+..+..........+. .+. ++..+......
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHH
Confidence 99999999999999998754 22333333444445556666666666565555433322 222 22222222222
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 536 EEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
+.+...+..... ..|+ +..++..+...|++++|...+++++..+|.
T Consensus 192 ~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 192 ERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 222222211111 1222 334677888999999999999999998765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=7.3e-10 Score=104.83 Aligned_cols=263 Identities=8% Similarity=-0.033 Sum_probs=128.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----------cCChHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGR----------VGKLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 101 (673)
.....++|+++++.+++.+ |.+..+|+....++.. .|++.+|+.+++.+.+..+. +...|..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHH
Confidence 3344577888888887766 5555555443333222 22345566666665554332 555555555544
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCccCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 102 GKKG--IVQESVKIFDIMKQLGVERSVKSYDA-LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLE 178 (673)
Q Consensus 102 ~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 178 (673)
...+ ++++|...++++.+.. +++...+.. ....+...+.++.|+..+++.++.+ +-+...|..+..++...|+++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 4443 3566666666665543 233444332 2344445566666666666665543 224555655656666666655
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
+|...+...... .|+ .......+...+..+++...+....... +++...+..+...+...++.++|...+.+..
T Consensus 196 ~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 554433332222 011 0112222333344445555555544432 2233334444445555555555555555554
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHH
Q 005856 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKL 308 (673)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (673)
... +.+..++..+..++...|++++|.+.++.+++. .|.+...|..+
T Consensus 270 ~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L 316 (334)
T d1dcea1 270 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDL 316 (334)
T ss_dssp TTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHH
T ss_pred hhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHH
Confidence 331 122334445555555555555555555555552 44334444444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.1e-07 Score=78.81 Aligned_cols=136 Identities=8% Similarity=-0.074 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
.+...|++++|++.|.++ .+|+..+|..+...+...|++++|...|++.++.++. ....|..++.++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 344455555555555432 1244444555555555555555555555555555443 34445555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCC-ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
|++.|++.+... |....+ .+.. +...... ....+..++.++.+.|++++|.+.+.+++...
T Consensus 89 A~~~~~kAl~~~--~~n~~~--~~~~--------------~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQL--RGNQLI--DYKI--------------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTT--TTCSEE--ECGG--------------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC--ccCchH--HHHH--------------hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 555555444310 000000 0000 0000000 12445567888888888888888888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=4.3e-07 Score=83.12 Aligned_cols=195 Identities=12% Similarity=-0.016 Sum_probs=119.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--chhh
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGH---SP--ASSL 486 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~ 486 (673)
|......|...+++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|.+.+++..+... .+ ...+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 555667788888888888888877642 1111 235777788888888888888888887654210 11 1234
Q ss_pred HHHHHHHHh-ccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC------
Q 005856 487 FRSVMESLF-EDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV-PN------ 553 (673)
Q Consensus 487 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~------ 553 (673)
+..+...|. ..|++++|+..++++.+. +..+ ...++..++..+...|++++|++.++++...... +.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 445555554 458888888888887654 1111 1344667788888888888888888887763211 11
Q ss_pred --HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC----hHhHHHHHHHHHh--cCChHHHHHHHHH
Q 005856 554 --FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID----LASYEKVLDALLA--AGKTLNAYSILFK 611 (673)
Q Consensus 554 --~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~l~~--~g~~~~A~~~~~~ 611 (673)
+...+..+...|++..|...++++.+..+... ......++.++.. .+++.+|+..|++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11233344467888888888888877654321 1123344444443 2446666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=5.8e-07 Score=68.82 Aligned_cols=56 Identities=13% Similarity=-0.109 Sum_probs=25.2
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+.++...|++++|+..+++++..+|. ++..|..++.++...|++++|+..++++++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 44 SAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33333444444444444444444332 333344444445555555555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.60 E-value=1.2e-05 Score=72.19 Aligned_cols=223 Identities=9% Similarity=-0.048 Sum_probs=138.7
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLI 456 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 456 (673)
..+..+...+.+.+++++|...|++..+.+ +...+..|...|.. ..++..|...+......+ ++.....+.
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 345556666677788888888888887764 45556666766665 567778888888777654 333444444
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH----hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 457 ESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESL----FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 457 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
..+.. ..+.+.|...++...+.|.... ...+...+ ........+...+......+ +...+..+...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence 44432 4566778888887776553221 11222222 23455666777776665543 45556666666
Q ss_pred HHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh--
Q 005856 529 LLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-- 598 (673)
Q Consensus 529 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 598 (673)
+.. ..+...+...++...+.+..+....++..+.. ..++++|+.+|+++.+.+ ++..+..|+.+|..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTS
T ss_pred hccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCC
Confidence 664 34667777777777665544444445555543 457788888888887765 34455567777765
Q ss_pred --cCChHHHHHHHHHHHHcCC
Q 005856 599 --AGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 599 --~g~~~~A~~~~~~~~~~~~ 617 (673)
..++.+|.++++++...|.
T Consensus 229 g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHHHHHHHCcC
Confidence 3367778888888777764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.6e-06 Score=70.93 Aligned_cols=126 Identities=10% Similarity=-0.073 Sum_probs=85.0
Q ss_pred HHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCH
Q 005856 63 IEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRY 142 (673)
Q Consensus 63 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 142 (673)
+..+...|+++.|++.|+++. ++++.+|..+..+|...|++++|...|++..+.+ +.....|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 445667788888888887653 2466777777778888888888888888877765 45566777777778888888
Q ss_pred HHHHHHHHHHHhCCCC--------------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005856 143 MMAKRYFNKMLSEGIE--------------PT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGIS 193 (673)
Q Consensus 143 ~~A~~~~~~~~~~~~~--------------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 193 (673)
++|+..|++.+..... ++ ..++..+..++...|++++|.+.+.........
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 8888877776543110 00 133445555666777777777777766665433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=6.3e-07 Score=81.97 Aligned_cols=191 Identities=13% Similarity=0.031 Sum_probs=131.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-----CCHHHHH
Q 005856 454 CLIESYLRKGEPADAKTALDSMIED----GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-----ENLDLVA 523 (673)
Q Consensus 454 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~ 523 (673)
.....|...|++++|.+.|.++.+. +-.++ ..+|..+...|.+.|++++|...+++..+.... .....+.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3456788999999999999988753 11121 356788888999999999999999988765111 1134556
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhC----CCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC------hHh
Q 005856 524 KILEALLM-RGHVEEALGRIDLMMQS----GSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID------LAS 588 (673)
Q Consensus 524 ~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 588 (673)
.++..|.. .|++++|++.+++..+. +..+. +..++..+...|++++|...++++....+... ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 67777754 69999999999987651 22222 34477888899999999999999988754432 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHHHhc--CCcchHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIMEKGG-VT---DWKSSDKLIAGLNQE--GNTKQADILS 644 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~--g~~~~a~~~~ 644 (673)
+...+..+...|++..|.+.++++.+... .+ ....+..++.++... +++++|..-.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45667778889999999999999876532 12 233445566666552 3355554433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=9.3e-07 Score=72.26 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTI 568 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~ 568 (673)
.|.+.|++++|+..|+++++.++. +...|..++.+|...|++++|++.|+++++ ..|+ +..++.++...|+++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcCCHH
Confidence 445555556666655555555443 455555555555555555555555555555 3343 223344444555555
Q ss_pred HHHHHHHHHhcCC
Q 005856 569 AAVKLLDFCLGRD 581 (673)
Q Consensus 569 ~A~~~~~~~~~~~ 581 (673)
+|+..+++++..+
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 5555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.1e-06 Score=67.21 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=52.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
+.+...|++++|+..|+.+++.+ |.++.+|..+..++...|++++|+..++..++.++. ++..|..+..++...|++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 34555566666666666666554 555556666666666666666666666665554432 555555555566666666
Q ss_pred HHHHHHHHHHHHc
Q 005856 108 QESVKIFDIMKQL 120 (673)
Q Consensus 108 ~~a~~~~~~~~~~ 120 (673)
++|+..|+...+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=7.4e-07 Score=76.49 Aligned_cols=98 Identities=12% Similarity=-0.005 Sum_probs=79.3
Q ss_pred CchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHH
Q 005856 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSL 557 (673)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 557 (673)
|+...+......+.+.|++++|+..|+++++..+. +...|..++.+|.+.|++++|+..++++++ +.|+ +..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 66677777788888889999999999888888665 778888888888888889989888888887 6676 3457
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCC
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (673)
+.++...|++++|+..+++++...|
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 7777788888888888888887543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=2.1e-07 Score=80.10 Aligned_cols=99 Identities=8% Similarity=0.006 Sum_probs=87.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005856 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (673)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (673)
|+...+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++++..+. +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677788888999999999999999999988754 346777888899999999999999999999887655 678889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 005856 527 EALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+|...|++++|+..|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=0.00014 Score=64.77 Aligned_cols=224 Identities=12% Similarity=-0.077 Sum_probs=161.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFR 488 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 488 (673)
||..+..|...+...+++++|.+.|++..+.| +...+..|...|.. ..++..|...+....+.+. | ....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhh
Confidence 56778888888999999999999999998876 66677777777776 5688999999999887552 2 2222
Q ss_pred HHHHHH----hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 489 SVMESL----FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL----MRGHVEEALGRIDLMMQSGSVPNFDSLLSV 560 (673)
Q Consensus 489 ~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 560 (673)
.+...+ ...++.+.|...++...+.|.. .....+...+. .......|...+......+.......++..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhh
Confidence 332222 3467889999999999887643 33333433333 244678888888877664433334456666
Q ss_pred HHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 561 LSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN 632 (673)
Q Consensus 561 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (673)
+.. ..+...+..+++.+.+.+ +......++..|.. ..++++|+..|++..+.+ ++..+..|+..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 653 567888999999888865 45566678888886 678999999999999987 4566667888877
Q ss_pred h----cCCcchHHHHHHHHHhhh
Q 005856 633 Q----EGNTKQADILSRMIRGEM 651 (673)
Q Consensus 633 ~----~g~~~~a~~~~~~~~~~~ 651 (673)
. ..+.++|....++.-..+
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHCc
Confidence 5 337888988777776555
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.7e-06 Score=69.36 Aligned_cols=91 Identities=11% Similarity=-0.036 Sum_probs=56.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
+.+.+.|+++.|+..|+.+++.+ |.+...|..++.++...|++++|...|+.+++..+. +..+|..+..+|...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 35556666666666666666665 556666666666666666666666666666655432 555666666666666666
Q ss_pred HHHHHHHHHHHHcC
Q 005856 108 QESVKIFDIMKQLG 121 (673)
Q Consensus 108 ~~a~~~~~~~~~~g 121 (673)
++|...+++..+..
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.2e-06 Score=69.63 Aligned_cols=83 Identities=13% Similarity=-0.014 Sum_probs=63.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (673)
.++.+|.+.|++++|+..+++++..+|. +...|..++.+|...|++++|+..|+++++..+ .+......+..+....+
T Consensus 67 nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 67 NLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 3566777899999999999999998765 566777899999999999999999999988642 35555555666655555
Q ss_pred CcchH
Q 005856 636 NTKQA 640 (673)
Q Consensus 636 ~~~~a 640 (673)
...+.
T Consensus 145 ~~~~~ 149 (170)
T d1p5qa1 145 RQLAR 149 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.38 E-value=1e-06 Score=66.65 Aligned_cols=83 Identities=19% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 005856 527 EALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 602 (673)
..+.+.|++++|+..+++++. ..|+ +..++.++.+.|++++|+..++++++.+|. ....+..++.+|...|++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 334444444444444444444 2232 122333344444444444444444444332 233334455555555555
Q ss_pred HHHHHHHHHH
Q 005856 603 LNAYSILFKI 612 (673)
Q Consensus 603 ~~A~~~~~~~ 612 (673)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.3e-07 Score=69.14 Aligned_cols=92 Identities=8% Similarity=-0.066 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccC---ChHHHHHHHHHHhcCCCCCC-hHhHHHHHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKG---KTIAAVKLLDFCLGRDCIID-LASYEKVLD 594 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 594 (673)
..++..+...+++++|.+.|++.+. ..|+ ...++.++.+.+ ++++|+.++++++..++.|+ ...+..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3466667777778888888887777 4454 234566665533 44567777887777655443 235567778
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 005856 595 ALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 595 ~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+|.+.|++++|++.++++++..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHhC
Confidence 8888888888888888877753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=9.5e-08 Score=94.85 Aligned_cols=226 Identities=9% Similarity=-0.047 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLRKGEPADAKTALDSMI 476 (673)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 476 (673)
+|.+.|++..+..+.....+..+..++...+++++| ++++... .|+. ..++. ....-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV--EQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH--HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH--HHHHHHHHHHHHHHHHHHhc
Confidence 456666666655544455555556666666666554 4444432 1211 11111 00000111334555555555
Q ss_pred HcCCCCchhhHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-
Q 005856 477 EDGHSPASSLFRSVMESL--FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN- 553 (673)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 553 (673)
+....++..-.......+ ...+.++.++..+....+..+. +...+..+...+.+.|+.++|...++.... ..|.
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP-CRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH--HHHHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChh-hHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCHHH
Confidence 433233322222111111 1233344444444433333221 344455566666667777777666555443 1121
Q ss_pred -HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 554 -FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN 632 (673)
Q Consensus 554 -~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (673)
+..++..+...|++++|..+++++++..|. +...|+.++.++...|++.+|+..|.+++... +|.+.++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 334566666677777777777777776544 34556677777777777777777777776643 344555555655555
Q ss_pred hcC
Q 005856 633 QEG 635 (673)
Q Consensus 633 ~~g 635 (673)
+..
T Consensus 232 ~~~ 234 (497)
T d1ya0a1 232 KAL 234 (497)
T ss_dssp HHT
T ss_pred Hhh
Confidence 443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.31 E-value=0.0011 Score=60.04 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=42.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 005856 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKS 623 (673)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 623 (673)
...++..+.+.+++.-...+++.....+ +....+++...|...++++. +++.++..+..|...
T Consensus 251 ~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~----l~~~i~~~~~fd~~~ 313 (336)
T d1b89a_ 251 HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA----LRTSIDAYDNFDNIS 313 (336)
T ss_dssp HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH----HHHHHHHCCCSCHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH----HHHHHHHhcccCHHH
Confidence 3445556666777777777777655543 34678899999999999755 566666665556544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=2.8e-06 Score=64.19 Aligned_cols=91 Identities=12% Similarity=-0.093 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 005856 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (673)
Q Consensus 24 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 103 (673)
......+.+.|+++.|+..|+.+.+.+ |.++.+|..++.++.+.|++++|+..|+..++..+. +..++..+...|..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHH
Confidence 334445556666666666666666655 455666666666666666666666666666554432 55566666666666
Q ss_pred cCCHHHHHHHHHHH
Q 005856 104 KGIVQESVKIFDIM 117 (673)
Q Consensus 104 ~~~~~~a~~~~~~~ 117 (673)
.|++++|.+.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.3e-05 Score=65.77 Aligned_cols=83 Identities=8% Similarity=-0.107 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
.+|..++.+|.+.|++++|+..+++.+. ..|+ +..++.++...|++++|+..|+++++.+|. +......+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3466677888888888888888888887 5565 345677777888888888888888887654 45555556555
Q ss_pred HHhcCChHHH
Q 005856 596 LLAAGKTLNA 605 (673)
Q Consensus 596 l~~~g~~~~A 605 (673)
..+.+...+.
T Consensus 140 ~~~~~~~~~~ 149 (170)
T d1p5qa1 140 QQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=5.1e-06 Score=63.48 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=70.2
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN---PDSAFEIVKIMGRRGVPRD-ADAYICLIESY 459 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 459 (673)
..+++.+...+++++|.+.|++....+|.++.++..+..++.+.++ +++|+.+++.+...+..|+ ..++..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3456666777788888888888888888888888888887776444 4457777777776543333 23666777778
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchh
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASS 485 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~ 485 (673)
.+.|++++|.+.|+++++. .|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 8888888888888887763 35543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=9.3e-06 Score=63.02 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+...+...|++++|+..|+++++.++. +...+..+..+|.+.|++++|++.++++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 334455555555555555555555433 445555555555555555555555555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=5.6e-06 Score=64.30 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC------hHhHHH
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID------LASYEK 591 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 591 (673)
+..++..+.+.|++++|+..|++.++ ..|+ +..++.++...|++++|+..++++++.++... ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44567778888888888888888887 4555 34467777788888888888888887543322 235666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++..+...|++++|++.+++.+...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 7777888888888888888877653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.10 E-value=5.7e-05 Score=61.78 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=59.1
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (673)
++.++.+.|++++|+..+++++..+|. +...|..++.+|...|++++|++.|+++++.. +....+...+..+....+.
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHh
Confidence 555667888999999998888887654 56667788899999999999999999988754 3345555555555555554
Q ss_pred cchH
Q 005856 637 TKQA 640 (673)
Q Consensus 637 ~~~a 640 (673)
..+.
T Consensus 148 ~~e~ 151 (168)
T d1kt1a1 148 HNER 151 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=0.0033 Score=56.79 Aligned_cols=136 Identities=12% Similarity=0.078 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 133 (673)
|+..-...++..|.+.|.++.|..+|..+.+ |..++..+.+.++++.|.+.+.+. .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3444445566666677777777777765543 345566666667777666655433 3455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 005856 134 KLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFK 210 (673)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 210 (673)
..+.+.....-+ .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 666665554433 1112222334444455666666667777777766665533 1335556666666666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.99 E-value=0.00015 Score=59.20 Aligned_cols=91 Identities=8% Similarity=-0.093 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
.+|..+..+|.+.|++++|+..++++++ ..|+ +...+.++...|++++|+..|++++..+|. +......+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhh--cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3456677888889999999999888887 5565 345677778889999999999998887754 44555555555
Q ss_pred HHhcCChHH-HHHHHHHHH
Q 005856 596 LLAAGKTLN-AYSILFKIM 613 (673)
Q Consensus 596 l~~~g~~~~-A~~~~~~~~ 613 (673)
..+.+...+ ..+.+.+|.
T Consensus 142 ~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 555544433 334444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=0.00014 Score=58.24 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..+..+|.+.|++++|+..++.+++.++. +..+|..++.++...|++++|+..|++.++
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444455555555555555555554433 444455555555555555555555555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=7.6e-05 Score=61.10 Aligned_cols=74 Identities=14% Similarity=-0.075 Sum_probs=56.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL 631 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (673)
.++.++.+.|++++|+..++++++.+|. ....|..++.+|...|++++|+..|+++++..+ ....+...+..+.
T Consensus 82 nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~~ 155 (169)
T d1ihga1 82 NIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3566777899999999999999998754 567778899999999999999999999998642 2343434444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=6.9e-05 Score=61.36 Aligned_cols=83 Identities=13% Similarity=-0.059 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 005856 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594 (673)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 594 (673)
...+..+..++.+.|++++|+..++++++ +.|+ +..++.++...|++++|+..|+++++.+|. +...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44566778888888999999999888887 6676 345777777889999999999989887654 4444555555
Q ss_pred HHHhcCChHH
Q 005856 595 ALLAAGKTLN 604 (673)
Q Consensus 595 ~l~~~g~~~~ 604 (673)
+..+.....+
T Consensus 154 ~~~~l~~~~~ 163 (169)
T d1ihga1 154 VKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5444443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00021 Score=57.08 Aligned_cols=96 Identities=15% Similarity=-0.043 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCc-----------hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME-----------ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (673)
-...+.+.|++.+|+..|.++++.. +.....++ ..++..+..+|.+.|+++.|+..++.+++..|
T Consensus 23 ~G~~~f~~~~y~~A~~~Y~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 23 EGNEFFKKNEINEAIVKYKEALDFF----IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT----TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC----cchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 3345566677777777777665432 11111111 12333444445555555555555555555555
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
.+..+|..++.++...|++++|...|+...+
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=3.1e-06 Score=83.69 Aligned_cols=131 Identities=7% Similarity=-0.102 Sum_probs=52.1
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDS 474 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 474 (673)
.++.++..++......+++...+..+...+.+.|+.++|...++...... ...++..+...+...|++++|...+++
T Consensus 101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~ 177 (497)
T d1ya0a1 101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRH 177 (497)
T ss_dssp HHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34444444433333334455555556666666666666655555444311 123455556666666666666666666
Q ss_pred HHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
..+.. +.+...|+.+...+...|+..+|...|.+.+...+ |-..++..|...+.
T Consensus 178 A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 178 AAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALS 231 (497)
T ss_dssp HHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHH
T ss_pred HHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence 66532 22345566666666666666666666666665533 24455555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.78 E-value=2.7e-05 Score=68.71 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=79.6
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHccCChHH
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLS----VLSEKGKTIA 569 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----~~~~~g~~~~ 569 (673)
..+.|++++|+..+++.++..+. +...+..++..|+..|++++|++.++...+ ..|+...... .+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 45678899999999998888766 788888888999999999999999888888 6677543333 2223333333
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+..........+..+....+...+..+.+.|++++|.+.++++.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 32222211111211223334455677778899999999998887754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.67 E-value=3.4e-05 Score=68.04 Aligned_cols=124 Identities=15% Similarity=0.028 Sum_probs=75.6
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
-..+.|++++|+..|+.+.+.+ |.+...+..++.+++..|++++|...|+...+..+. +...+..+...+...+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccH
Confidence 3456788888888888888877 778888888888888888888888888888775432 3444444444433333322
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
++..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22211111111111222233334445566778888888877777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=7.4e-05 Score=59.08 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=62.0
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 110 (673)
.+.+.+++|++.|+.+.+.+ |.++.++..+..++...+++..+.+- .+.+++|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~~A 60 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHHHH
Confidence 34556889999999998887 88888888888888766554433221 1233455
Q ss_pred HHHHHHHHHcCCccCHhhHHHHHHHHHHcC-----------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 005856 111 VKIFDIMKQLGVERSVKSYDALFKLILRRG-----------RYMMAKRYFNKMLSEGIEPTRHTYN 165 (673)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~ 165 (673)
...|++..+.. |.+..+|..+..+|...| .++.|.+.|++.++. .|+...|.
T Consensus 61 i~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~ 123 (145)
T d1zu2a1 61 ITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 123 (145)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHH
Confidence 55555555543 334445555555554432 245566666665553 34444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.0007 Score=55.34 Aligned_cols=122 Identities=10% Similarity=-0.059 Sum_probs=81.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
...+...|++++|.+.|..++...+-++-. ......-+...-..+.. .....+..+...+.+.|+
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~-----------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLD-----------DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccc-----------cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 347778999999999999998764111110 00111111111111111 124566777888888888
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS-----EGIEPTRHTY 164 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 164 (673)
+++|+..++++.+.. +-+...|..++.+|.+.|++.+|++.|+++.. .|+.|+..+-
T Consensus 83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 888888888888765 56778888888888888888888888887743 4788887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=0.0012 Score=53.81 Aligned_cols=58 Identities=9% Similarity=0.006 Sum_probs=30.6
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 440 (673)
+..+..++...|++++|...++.+....|.+...|..++.+|...|+..+|++.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.40 E-value=0.00021 Score=57.39 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+..++.+|...|++++|++.|+++++
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00028 Score=50.70 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhcCCCC-----CC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 555 DSLLSVLSEKGKTIAAVKLLDFCLGRDCI-----ID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKL 627 (673)
Q Consensus 555 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 627 (673)
..++..+.+.|++++|+..++++++..+. ++ ..++..++.++.+.|++++|++.++++++.. |.+..++..+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~Nl 86 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 34566666777777777777776654211 11 4566778888888888888888888888754 2334444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.38 E-value=0.00043 Score=54.49 Aligned_cols=73 Identities=11% Similarity=-0.030 Sum_probs=51.7
Q ss_pred HHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 005856 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN----------PDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (673)
|-+.+.+++|...|+...+..|.++.++..+..++...++ +++|...|+.+.+.+ +.+..+|..+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 3455678999999999999999999999999988875443 456667777666643 22556666666666
Q ss_pred HhcC
Q 005856 460 LRKG 463 (673)
Q Consensus 460 ~~~~ 463 (673)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.26 E-value=0.00033 Score=56.20 Aligned_cols=92 Identities=10% Similarity=-0.143 Sum_probs=63.1
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCC-----------hHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCC----
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIID-----------LASYEKVLDALLAAGKTLNAYSILFKIMEKG-----GVT---- 619 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-----~~~---- 619 (673)
.+...|++++|+..|+++++..+..+ ...|..++.+|.+.|++++|.+.+++.+.-. ..+
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34455666666666666665332211 3467789999999999999999999988621 111
Q ss_pred -CHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 620 -DWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 620 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
....+..++.+|...|++++|....+...+..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12346678999999999999977666655544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0034 Score=44.76 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHH
Q 005856 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (673)
.+-.+...+.+.|+++.|+..|+++++.... ..........++..+..++.+.|++++|...++++.+..|.++.+++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~--~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDE--GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh--hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3445777888999999999999998876532 11111123457888899999999999999999999998888888777
Q ss_pred HHH
Q 005856 419 NLI 421 (673)
Q Consensus 419 ~l~ 421 (673)
.+.
T Consensus 85 Nl~ 87 (95)
T d1tjca_ 85 NLK 87 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.91 E-value=0.0064 Score=46.62 Aligned_cols=111 Identities=11% Similarity=-0.048 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHH
Q 005856 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLL 574 (673)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~ 574 (673)
|+++|.++|++..+.|.. .....+. .....+.++|++.+++..+.+.......+...|.. ..+.++|..+|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 455666666666555422 1112222 12334566666666666665443333444444432 34667777777
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 005856 575 DFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~ 617 (673)
+++.+.+ ++.....|+.+|.. ..+..+|.++++++.+.+.
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777765 33444567776665 3577778888887777663
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.71 E-value=0.014 Score=44.59 Aligned_cols=111 Identities=9% Similarity=-0.162 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEAL 539 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 539 (673)
|+++|.+.|++..+.|... ....+ +.....+.++|..++++..+.| +......+...|.. ..++++|+
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4556666666665554221 11112 1233456777777877777765 44555556655553 34678888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCC
Q 005856 540 GRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 540 ~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~ 582 (673)
++|++..+.+..+....+...|.. ..+.++|..+++++.+.+.
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888887776655555556555553 4578888888888887763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.83 Score=42.96 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=79.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (673)
.+..+.+...+......+ .+.......+......+++..+...+..+... .........-+++++...|+.++|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 344455555555554432 22222233333344556666666666655332 111233334456666666777777666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCC-CCC--C----hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 542 IDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRD-CII--D----LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
|..+.. .+++-.++-+- +.|..- .+... +.. . ...-...+..|...|+..+|...+..+..
T Consensus 342 ~~~~a~---~~~fYG~LAa~-~Lg~~~--------~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~ 409 (450)
T d1qsaa1 342 LHQLMQ---QRGFYPMVAAQ-RIGEEY--------ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (450)
T ss_dssp HHHHHT---SCSHHHHHHHH-HTTCCC--------CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhc---CCChHHHHHHH-HcCCCC--------CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh
Confidence 666553 13432221111 111100 00000 000 0 00012345667777777777777777665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 615 KGGVTDWKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 615 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
.. +......+.....+.|.++.|......
T Consensus 410 ~~---~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 410 SK---SKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp TC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 43 233334456666777777777655443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.65 E-value=0.23 Score=35.77 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=82.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
+.-.|..++..+++.+.... .+..-++.++......-+-+...++++.+-+. ++.|- .....++.++...+...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~~se 87 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLNE 87 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCCH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcchHH
Confidence 34457777777777777653 44556666666666666666666666655332 22111 112334555554443222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
- .+..++.+..+|+-+.-.+++...++ +-+++++....++.+|-+.|...+|-+++.++-++|.
T Consensus 88 ~---------------vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 H---------------VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp H---------------HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H---------------HHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 1 12244556667777777777666555 4466777777888888888888888888888777763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.1 Score=38.08 Aligned_cols=61 Identities=11% Similarity=-0.068 Sum_probs=42.0
Q ss_pred HHHHHHHcc---CChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 SLLSVLSEK---GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~~~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+++++.+. .+.++|+.+++..++.++......+..++-+|++.|++++|.+.++++++..
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 466666654 4556788888877765433223455578888888888888888888888754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.16 Score=37.12 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 005856 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
+.++++.+++.+.+.++.-....+..+.-+|.+.|++++|.+.++.+++ +.|++
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 4456666666666554321234555666667777777777777777766 55663
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=2.7 Score=39.21 Aligned_cols=203 Identities=9% Similarity=0.028 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcHHh---HHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 005856 280 GKMVEVQKVLREMVERYIPPKDNSV---FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRA 356 (673)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 356 (673)
.+.+.+..++.......... .... ...+.......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLN-EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhccccc-HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 45666776666655532222 1111 1112222334556666776666665543 3344444445555666788888
Q ss_pred HHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 005856 357 IKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEI 436 (673)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 436 (673)
...+..+ +.... .......-+..++...|+.+.|...|..+... ++ .|..|...- .|..-.
T Consensus 305 ~~~~~~l--------~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~--~~--fYG~LAa~~--Lg~~~~---- 365 (450)
T d1qsaa1 305 NTWLARL--------PMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RG--FYPMVAAQR--IGEEYE---- 365 (450)
T ss_dssp HHHHHHS--------CTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CS--HHHHHHHHH--TTCCCC----
T ss_pred HHHHHhc--------Ccccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC--CC--hHHHHHHHH--cCCCCC----
Confidence 7777766 22111 12233344567777788888888888877643 22 233322211 111100
Q ss_pred HHHHHhCCCC--CC-H---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 437 VKIMGRRGVP--RD-A---DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 437 ~~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
+....++ +. . ..-...+..+...|....|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 366 ---~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 366 ---LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp ---CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ---CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0000000 00 0 00112345566778888888888877652 24445556667777888888888666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.08 E-value=1.4 Score=31.59 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005856 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (673)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 297 (673)
..++..+......|.-++-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.++-+.|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444555556666666666666654433 55666666666666666666666666666655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.90 E-value=4.7 Score=27.33 Aligned_cols=49 Identities=6% Similarity=0.119 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005856 176 KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (673)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (673)
+.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555555555556666666666666666666666666666666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.99 E-value=6.2 Score=26.72 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=17.0
Q ss_pred CCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHc
Q 005856 376 LDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409 (673)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (673)
..|++....+.+.+|.+.+++..|.++++.++..
T Consensus 37 lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 37 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544443
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.01 E-value=9.7 Score=28.35 Aligned_cols=96 Identities=18% Similarity=0.335 Sum_probs=45.1
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--H
Q 005856 479 GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD--S 556 (673)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~ 556 (673)
|++-....|..-...+...|++.+|.++--..-+ |+--+..+.+.+-.+=...|...--+.+|..+.+.+.-..+. .
T Consensus 26 ~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~~LN~~ESlE 104 (157)
T d1bpoa1 26 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLE 104 (157)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCCCchHHhHH
Confidence 4444444555555566666666666655533322 222244544444333233445555555555555543221122 2
Q ss_pred HHHHHHccCChHHHHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLD 575 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~ 575 (673)
++......|+.+-...+++
T Consensus 105 l~r~vL~q~r~~lve~Wl~ 123 (157)
T d1bpoa1 105 LCRPVLQQGRKQLLEKWLK 123 (157)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH
Confidence 3333344556555555544
|