Citrus Sinensis ID: 005890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-
MATYFHLNPSEIQAGDGGGMQTLYLMNPSYDYTTSLPNNTLLLNPVNLSHAPPSNDHQQQQHPLVGIPLPHAASSSHDHQDNIPGGGVHYDLWSSIDQNSSQNNQTHMASLAAAAAASNSTAPLGLLRPVASVPNRQQGLSLSLSSQQVAAYNRPINNNNNSIEVDDLHKGRGLQQGQVTESSPSSVSVVTSSGINSSTQSAILGSKYLKAAQELLDEVVKVESMIIKGSDHHHSAKAAQIKETMKMNRESIDGDQELNGTGDSTKSSFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKATSKKLGEDDCLGAKAEGSRLRFIDHQIRQQRALQHLGMQHHAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEELKEQEKNGSAENISKTESKESPQLLEQIKSLQAKAEKSTTQISPTELSNSTMSTSPMGGNFRQQTGFNLIGPSDHHLEGFVQRSQKKPRNAEMQNSRSSINDPGGGFGMFSMGPEIGRFNPDNHHHHHQLAAPTFHGNNGVSLTLGLPHCENLSLSGSQHNLLSSGQNIEPDHFCGIETPQHNSHSGTAYESIDIQSRKRFAAQLLPDFVT
cccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEEccccccccccccccEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHcc
matyfhlnpseiqagdgggmqtlylmnpsydyttslpnntlllnpvnlshappsndhqqqqhplvgiplphaassshdhqdnipgggvhydlwssidqnssqnNQTHMASLAAAAAasnstaplgllrpvasvpnrqqglslSLSSQQVAaynrpinnnnnsievddlhkgrglqqgqvtesspssVSVVTssginsstqsAILGSKYLKAAQELLDEVVKVESMIikgsdhhhsAKAAQIKETMKMNResidgdqelngtgdstkssFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQaagfgsaksYTALALRTISKQFRCLKDAISAQIKATSkklgeddclgakaegsrlrfIDHQIRQQRALQHLGmqhhawrpqrglpERAVTILRAWLFEhflhpypkdsdkqqlakqtgltrsqvsNWFINARVRLWKPMVEEMYMEELKEQekngsaeniskteskesPQLLEQIKSLQAKAeksttqisptelsnstmstspmggnfrqqtgfnligpsdhhlegfvqrsqkkprnaemqnsrssindpgggfgmfsmgpeigrfnpdnhhhhhqlaaptfhgnngvsltlglphcenlslsgsqhnllssgqniepdhfcgietpqhnshsgtayesiDIQSRKRFAAQLLPDFVT
matyfhlnpseiqagdGGGMQTLYLMNPSYDYTTSLPNNTLLLNPVNLSHAPPSNDHQQQQHPLVGIPLPHAASSSHDHQDNIPGGGVHYDLWSSIDQNSSQNNQTHMASLAAAAAASNSTAPLGLLRPVASVPNRQQGLSLSLSSQQVAAYNRPINNNNNSIEVDDLHKGRGLQQgqvtesspssVSVVTSSGINSSTQSAILGSKYLKAAQELLDEVVKVESMIikgsdhhhsaKAAQIKETMKMNRESIDGDQELNGTGDSTKSSFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKatskklgeddCLGAKAEGSRLRFIDHQIRQQRALQHLGMQHhawrpqrglpERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTgltrsqvsnwfinARVRLWKPMVEEMYMEELKEqekngsaeniskteskespqLLEQIKSLQakaeksttqisptelsnstMSTSPMGGNFRQQTGFNLIGPSDHHLEGFVQRSqkkprnaemqnsrssindpggGFGMFSMGPEIGRFNPDNHHHHHQLAAPTFHGNNGVSLTLGLPHCENLSLSGSQHNLLSSGQNIEPDHFCGIETPQHNSHSGTAYESIDIQSRKRFAAQLLPDFVT
MATYFHLNPSEIQAGDGGGMQTLYLMNPSYDYttslpnntlllnpvnlsHAPPSNDHQQQQHPLVGIPLPHAASSSHDHQDNIPGGGVHYDLWssidqnssqnnqTHMaslaaaaaasnstaPLGLLRPVASVPNRqqglslslssqqVAAYNRPInnnnnSIEVDDLHKGRGLQQGQvtesspssvsvvtssginsstQSAILGSKYLKAAQELLDEVVKVESMIIKGSDHHHSAKAAQIKETMKMNRESIDGDQELNGTGDSTKSSFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKATSKKLGEDDCLGAKAEGSRLRFIDHQIRQQRALQHLGMQHHAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPmveemymeelkeqeKNGSAENISKTESKESPQLLEQIKSLQAKAEKSTTQISPTELSNSTMSTSPMGGNFRQQTGFNLIGPSDHHLEGFVQRSQKKPRNAEMQNSRSSINDpgggfgmfsmgpEIGRFNPDNHHHHHQLAAPTFHGNNGVSLTLGLPHCENLSLSGSQHNLLSSGQNIEPDHFCGIETPQHNSHSGTAYESIDIQSRKRFAAQLLPDFVT
******************GMQTLYLMNPSYDYTTSLPNNTLLLN******************************************GVHYDLW*************************************************************************************************************ILGSKYLKAAQELLDEVVKVESMII*****************************************************IKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKATSKKLGEDDCLGAKAEGSRLRFIDHQIRQQRALQHLGMQHHAWRPQRGLPERAVTILRAWLFEHFLHPY**************LTRSQVSNWFINARVRLWKPMVEEMY***********************************************************************************************************************************************VSLTLGLPHCE***********************C************************************
MATYF***************QTLYL*********************************************************************************************************************************************************************************ILGSKYLKAAQELLDEVVKVESM*********************************************************KAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAG**SAKSYTALALRTISKQFRC****************************************************************VTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP*******************************************************************************************************************************************************LTLGL***************************************************KRFAAQLLPDFVT
MATYFHLNPSEIQAGDGGGMQTLYLMNPSYDYTTSLPNNTLLLNPVNLSHA**********HPLVGIPLPH********QDNIPGGGVHYDLWSSIDQN*******************NSTAPLGLLRPVASVPNRQQGLSLSLSSQQVAAYNRPINNNNNSIEVDDLHKG************************NSSTQSAILGSKYLKAAQELLDEVVKVESMIIKG**********QIKETMKMNRESIDGDQELNGTGDSTKSSFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIK********DDCLGAKAEGSRLRFIDHQIRQQRALQHLGMQHHAWRPQRGLPERAVTILRAWLFEHFLHPYPKD***********LTRSQVSNWFINARVRLWKPMVEEMYMEEL*********************QLLEQIKSL************************PMGGNFRQQTGFNLIGPSDHHLEGFV****************SSINDPGGGFGMFSMGPEIGRFNPDNHHHHHQLAAPTFHGNNGVSLTLGLPHCENLSLSGSQHNLLSSGQNIEPDHFCGIETPQHNSHSGTAYESIDIQSRKRFAAQLLPDFVT
*A******P*******GGGMQTLYLMNPSYDYTTSLPNNTLLLNPVNLSHAPPSNDHQQQQHPLVGIPLPHAA******************LWSSIDQNSSQNNQTHMASLAAAAAASNSTAPLGLLRPVASV******************************************************SVVTSSGINSSTQSAILGSKYLKAAQELLDEVVKVESM************************************************AQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKATSKKLG*********EGSRLRFIDHQIRQQRALQHLGMQHHAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEELKEQ*****************************************************************************************************GFGMFSMGPEIGRFNPDNHHHHHQLAAPTFHGNNGVSLTLGLPHCENL**************************************SIDIQSRKRFAAQLLPDFVT
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MATYFHLNPSEIQAGDGGGMQTLYLMNPSYDYTTSLPNNTLLLNPVNLSHAPPSNDHQQQQHPLVGIPLPHAASSSHDHQDNIPGGGVHYDLWSSIDQNSSQNNQTHMASLAAAAAASNSTAPLGLLRPVASVPNRQQGLSLSLSSQQVAAYNRPINNNNNSIEVDDLHKGRGLQQGQVTESSPSSVSVVTSSGINSSTQSAILGSKYLKAAQELLDEVVKVESMIIKGSDHHHSAKAAQIKETMKMNRESIDGDQELNGTGDSTKSSFELTTAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKATSKKLGEDDCLGAKAEGSRLRFIDHQIRQQRALQHLGMQHHAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEELKEQEKNGSAENISKTESKESPQLLEQIKSLQAKAEKSTTQISPTELSNSTMSTSPMGGNFRQQTGFNLIGPSDHHLEGFVQRSQKKPRNAEMQNSRSSINDPGGGFGMFSMGPEIGRFNPDNHHHHHQLAAPTFHGNNGVSLTLGLPHCENLSLSGSQHNLLSSGQNIEPDHFCGIETPQHNSHSGTAYESIDIQSRKRFAAQLLPDFVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query671 2.2.26 [Sep-21-2011]
Q9SJ56680 BEL1-like homeodomain pro yes no 0.900 0.888 0.417 1e-111
Q9SIW1482 BEL1-like homeodomain pro no no 0.515 0.717 0.455 1e-81
Q9FWS9524 BEL1-like homeodomain pro no no 0.406 0.520 0.517 4e-77
O65685532 BEL1-like homeodomain pro no no 0.378 0.477 0.561 1e-76
Q9FXG8538 BEL1-like homeodomain pro no no 0.372 0.464 0.536 2e-76
Q8S897431 BEL1-like homeodomain pro no no 0.384 0.598 0.483 9e-69
Q94KL5627 BEL1-like homeodomain pro no no 0.363 0.389 0.505 8e-67
Q38897611 Homeobox protein BEL1 hom no no 0.470 0.517 0.444 5e-66
Q9SW80739 BEL1-like homeodomain pro no no 0.365 0.331 0.490 8e-66
Q9LZM8575 BEL1-like homeodomain pro no no 0.429 0.500 0.397 2e-52
>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1 Back     alignment and function desciption
 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 311/745 (41%), Positives = 399/745 (53%), Gaps = 141/745 (18%)

Query: 1   MATYFHLNPSEIQAGDGGGMQTLYLMNPS-YDYTTSLPNNTLLLNPVNL----------- 48
           MA YFH NP EI AG  GG+QTL LMNP+ Y   T   N++   N  N            
Sbjct: 1   MAAYFHGNPPEISAGSDGGLQTLILMNPTTYVQYTQQDNDSNNNNNSNNSNNNNTNTNTN 60

Query: 49  ----------SHAPPSNDHQQQQHPLVGIPLPHAASSSHDHQDNIP-----GGGVHYDLW 93
                     SHAP  N  QQ     VGIPL    ++S    DNI         V Y L+
Sbjct: 61  NNNSSFVFLDSHAPQPNASQQ----FVGIPLSGHEAASITAADNISVLHGYPPRVQYSLY 116

Query: 94  SSIDQNSSQNNQTHMASLAAAAAASNSTAPLGLLRPVASVPNRQQGLSLSLSSQQVAAYN 153
            S      Q + TH  +                       P  QQGLSL+LSSQQ     
Sbjct: 117 GS-----HQVDPTHQQA-------------------ACETPRAQQGLSLTLSSQQQQQ-- 150

Query: 154 RPINNNNNSIEVDDLHKGRGLQQGQVTESSPSSVSVVTSSGINSSTQSAILGSKYLKAAQ 213
                  +  +   +H G G   G+       S     ++GI     + ++ SKYLKAAQ
Sbjct: 151 -----QQHHQQHQPIHVGFGSGHGEDIRVGSGSTGSGVTNGI-----ANLVSSKYLKAAQ 200

Query: 214 ELLDEVVKVESMIIKGSDHHHSAKAAQI--KETMKMNRESIDGDQELNGTGDSTKSSFEL 271
           ELLDEVV  +S  +       S+K       + +  +     G+    G   + K   EL
Sbjct: 201 ELLDEVVNADSDDMNAKSQLFSSKKGSCGNDKPVGESSAGAGGEGSGGGAEAAGKRPVEL 260

Query: 272 TTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTI 331
            TA+RQE+Q+KKAKL NML EVEQRY+QYH QMQ+V+S+FEQAAG GSAKSYT+LAL+TI
Sbjct: 261 GTAERQEIQMKKAKLSNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTI 320

Query: 332 SKQFRCLKDAISAQIKATSKKLGEDDCLGA--KAEGSRLRFIDHQIRQQRALQHLGMQHH 389
           S+QFRCLK+AI+ QIKA +K LGE+D +    + EGSRL+F+DH +RQQRALQ LGM  H
Sbjct: 321 SRQFRCLKEAIAGQIKAANKSLGEEDSVSGVGRFEGSRLKFVDHHLRQQRALQQLGMIQH 380

Query: 390 ----AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINAR 445
               AWRPQRGLPERAV++LRAWLFEHFLHPYPKDSDK  LAKQTGLTRSQVSNWFINAR
Sbjct: 381 PSNNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINAR 440

Query: 446 VRLWKPMVEEMYMEELKEQEKN-GSAENISKTESKESPQLLEQIKSLQAKAEKSTTQISP 504
           VRLWKPMVEEMYMEE+KEQ KN GS E     +S E              A KST+    
Sbjct: 441 VRLWKPMVEEMYMEEMKEQAKNMGSMEKTPLDQSNED------------SASKSTSNQEK 488

Query: 505 TELSNSTMSTSP-MGGNFRQQTGFNLIGPSDHHLEGFVQR------SQKKPRNAEMQNS- 556
           + ++++    +P   G+    TG          ++G  +R      +  +P NA+  ++ 
Sbjct: 489 SPMADTNYHMNPNHNGDLEGVTG----------MQGSPKRLRTSDETMMQPINADFSSNE 538

Query: 557 ---------RSSINDPG-----GGFGMFSMGPEIGRFNPDNHHHHHQLAAPTFHG-NNGV 601
                    R  I   G     G FG + M  E+ RF+  +     +L A  + G NNGV
Sbjct: 539 KLTMKILEERQGIRSDGGYPFMGNFGQYQMD-EMSRFDVVS---DQELMAQRYSGNNNGV 594

Query: 602 SLTLGLPHCENLSLSGSQ-----HNLLSSGQNIE--------PDHFCG---IETPQHNSH 645
           SLTLGLPHC++LS +  Q     H+ +  G+ ++        P    G     T   ++ 
Sbjct: 595 SLTLGLPHCDSLSSTHHQGFMQTHHGIPIGRRVKIGETEEYGPATINGGSSTTTAHSSAA 654

Query: 646 SGTAYESIDIQSRKRFAAQLLPDFV 670
           +  AY  ++IQ++KR+ AQLLPDFV
Sbjct: 655 AAAAYNGMNIQNQKRYVAQLLPDFV 679

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function description
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q9LZM8|BLH9_ARATH BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query671
225436140728 PREDICTED: BEL1-like homeodomain protein 0.941 0.868 0.530 1e-175
147769159728 hypothetical protein VITISV_027380 [Viti 0.941 0.868 0.529 1e-174
356550076702 PREDICTED: BEL1-like homeodomain protein 0.903 0.863 0.503 1e-160
296084040573 unnamed protein product [Vitis vinifera] 0.624 0.731 0.643 1e-152
224059218512 predicted protein [Populus trichocarpa] 0.663 0.869 0.598 1e-151
225439446696 PREDICTED: BEL1-like homeodomain protein 0.880 0.849 0.479 1e-148
356544766741 PREDICTED: BEL1-like homeodomain protein 0.923 0.836 0.473 1e-147
356534548661 PREDICTED: BEL1-like homeodomain protein 0.868 0.881 0.460 1e-146
147805477709 hypothetical protein VITISV_015358 [Viti 0.880 0.833 0.471 1e-146
224088098512 predicted protein [Populus trichocarpa] 0.676 0.886 0.555 1e-145
>gi|225436140|ref|XP_002275098.1| PREDICTED: BEL1-like homeodomain protein 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 406/765 (53%), Positives = 480/765 (62%), Gaps = 133/765 (17%)

Query: 1   MATYFHLNPSEIQAGDGGGMQTLYLMNPSY----DYTTSLPNNTLLLN--PVNLSHAPPS 54
           MATYFH   SEIQA    G+QTLYLMNP+Y    D       N L LN  P +L+     
Sbjct: 1   MATYFH-GSSEIQAD---GLQTLYLMNPNYIGYSDTQQPSAANMLFLNATPNSLNPTNLP 56

Query: 55  NDHQQQQHPLVGIPLPHAASSSHDHQDN---------------IPGGGVHYDLWSSIDQN 99
           N   Q QH  VGIPLP+  S++ D Q+                +P    HY+LW S DQN
Sbjct: 57  NMSLQNQH-FVGIPLPNMGSANSDDQNRSSLHAQPEMSSLQGIVPR--FHYNLWGSTDQN 113

Query: 100 SSQNNQTHMASLAAAAAAS---NSTAPLGLLRPVASVPNRQQGLSLSLSSQQVAAYNRPI 156
            +  NQ  + +  AAA++    + T+ LGL R V S    QQGLSLSLS  Q    + P 
Sbjct: 114 PT-GNQPQIPTAVAAASSGGAADVTSQLGLRRQVVSP--TQQGLSLSLSPHQPTYRSVPG 170

Query: 157 NNNNNSIEVDDLHKGRGLQQGQVTESSPSSVSVV---------TSSGINSSTQSAILGSK 207
            +        D+   +      ++ +S   + V           S+GI S  QS +LGSK
Sbjct: 171 EH--------DIQVQQQPPVQAISPTSGDDMRVSGGSSSTASAVSNGI-SGMQSVLLGSK 221

Query: 208 YLKAAQELLDEVVKVESMIIKGSDHHHSAKAAQIKETMKMNRESIDGD--QELNGTGDST 265
           YLKAAQ+LLDEV  V   I   S         + KE  K+N  S+     + L+G   S 
Sbjct: 222 YLKAAQQLLDEVANVGKGIKTDS-------GEETKEREKVNTISVAASTGEALSGGESSA 274

Query: 266 KSSFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTA 325
           K   EL+TAQRQELQ+KKAKLVNMLDEVEQRY+QYH QMQ+VVS+FEQAAG GSAKSYTA
Sbjct: 275 KRGAELSTAQRQELQMKKAKLVNMLDEVEQRYRQYHQQMQIVVSSFEQAAGQGSAKSYTA 334

Query: 326 LALRTISKQFRCLKDAISAQIKATSKKLGEDDCLGAKAEGSRLRFIDHQIRQQRALQHLG 385
           LAL+TISKQFRCLKDAISAQIKATS  LGE+DC G K EGSRLRF+DHQ+RQQRALQ LG
Sbjct: 335 LALQTISKQFRCLKDAISAQIKATSSSLGEEDCSGGKVEGSRLRFVDHQLRQQRALQQLG 394

Query: 386 M-QHHAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINA 444
           M QH+AWRPQRGLPERAV++LRAWLFEHFLHPYPKDSDK  LAKQTGLTRSQVSNWFINA
Sbjct: 395 MIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINA 454

Query: 445 RVRLWKPMVEEMYMEELKEQEKNGSAENISKTESKE------------SPQLLEQIKSLQ 492
           RVRLWKPMVEEMY+EE+K+QE NGS +N SK+E+ +                ++Q    Q
Sbjct: 455 RVRLWKPMVEEMYLEEIKDQEHNGSQDNASKSEANKELGSKSTAAQESGATRVDQTNDFQ 514

Query: 493 AKAEKSTTQ-ISPTELSNSTMSTSPMGGNFRQQTGFNLIGPSDHHLEGFVQRSQKKPRNA 551
           +K EKSTTQ  SP ELSNSTMSTSPMGG+ + Q GFNLIG S+  +EG VQRS KKPR+ 
Sbjct: 515 SKQEKSTTQNASPAELSNSTMSTSPMGGSLQVQAGFNLIGSSE--IEGMVQRSPKKPRSY 572

Query: 552 EMQNSRSSI------------------------------------NDPGGGFGMFSMGPE 575
           ++Q+S SSI                                     + GGGFG +S   +
Sbjct: 573 DIQSSPSSILSMDMEMKPGGTSREISMKFGSERQAKDGYPLITGAINNGGGFGAYSPIGD 632

Query: 576 IGRFNPDNHHHHHQLAAPTFHGNNGVSLTLGLPHCENLSLSGSQHNLLSSGQ-------- 627
           IGRFNP+      QL AP FHGN+ VSLTLGLPHCENLSLSGSQ + LS+          
Sbjct: 633 IGRFNPE------QL-APRFHGNS-VSLTLGLPHCENLSLSGSQQSYLSNPNVQLGRRLE 684

Query: 628 --NIEPDHFCGIETPQHNSHSGTAYESIDIQSRKRFAAQLLPDFV 670
             N EPD +CGI   Q  SHS  AY+SI+IQ+RKRFAAQLLPDFV
Sbjct: 685 MGNGEPD-YCGINAAQP-SHSNAAYDSINIQNRKRFAAQLLPDFV 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147769159|emb|CAN69527.1| hypothetical protein VITISV_027380 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550076|ref|XP_003543416.1| PREDICTED: BEL1-like homeodomain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|296084040|emb|CBI24428.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059218|ref|XP_002299773.1| predicted protein [Populus trichocarpa] gi|222847031|gb|EEE84578.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439446|ref|XP_002266838.1| PREDICTED: BEL1-like homeodomain protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544766|ref|XP_003540818.1| PREDICTED: BEL1-like homeodomain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356534548|ref|XP_003535815.1| PREDICTED: BEL1-like homeodomain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|147805477|emb|CAN63083.1| hypothetical protein VITISV_015358 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088098|ref|XP_002308323.1| predicted protein [Populus trichocarpa] gi|222854299|gb|EEE91846.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query671
TAIR|locus:2039250680 BLH1 "AT2G35940" [Arabidopsis 0.658 0.65 0.467 7.1e-103
TAIR|locus:2042609482 BLH7 "AT2G16400" [Arabidopsis 0.475 0.661 0.454 1.8e-72
TAIR|locus:2139614532 BLH6 "AT4G34610" [Arabidopsis 0.378 0.477 0.532 1.8e-68
TAIR|locus:2013154538 BEL10 "AT1G19700" [Arabidopsis 0.523 0.652 0.426 1.5e-65
TAIR|locus:2018398524 BLH3 "AT1G75410" [Arabidopsis 0.415 0.532 0.482 6.7e-65
TAIR|locus:2177856611 BEL1 "AT5G41410" [Arabidopsis 0.466 0.512 0.433 2.4e-64
TAIR|locus:2049035627 BLH4 "BEL1-like homeodomain 4" 0.354 0.379 0.494 1e-63
TAIR|locus:2115000739 BLH2 "AT4G36870" [Arabidopsis 0.588 0.534 0.364 5.9e-57
TAIR|locus:2185183575 RPL "AT5G02030" [Arabidopsis t 0.344 0.401 0.455 9.7e-53
TAIR|locus:2057856584 BLH8 "AT2G27990" [Arabidopsis 0.296 0.340 0.454 6.2e-48
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 898 (321.2 bits), Expect = 7.1e-103, Sum P(3) = 7.1e-103
 Identities = 220/471 (46%), Positives = 278/471 (59%)

Query:   203 ILGSKYLKAAQELLDEVVKVESMIIKGSDHHHSAKAAQIKETMKMNRESIDGDQELNGTG 262
             ++ SKYLKAAQELLDEVV  +S  +       S+K         +   S     E +G G
Sbjct:   190 LVSSKYLKAAQELLDEVVNADSDDMNAKSQLFSSKKGSCGNDKPVGESSAGAGGEGSGGG 249

Query:   263 DST--KSSFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSA 320
                  K   EL TA+RQE+Q+KKAKL NML EVEQRY+QYH QMQ+V+S+FEQAAG GSA
Sbjct:   250 AEAAGKRPVELGTAERQEIQMKKAKLSNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSA 309

Query:   321 KSYTALALRTISKQFRCLKDAISAQIKATSKKLGEDDCLGA--KAEGSRLRFIDHQIRQQ 378
             KSYT+LAL+TIS+QFRCLK+AI+ QIKA +K LGE+D +    + EGSRL+F+DH +RQQ
Sbjct:   310 KSYTSLALKTISRQFRCLKEAIAGQIKAANKSLGEEDSVSGVGRFEGSRLKFVDHHLRQQ 369

Query:   379 RALQHLGM-QH---HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTR 434
             RALQ LGM QH   +AWRPQRGLPERAV++LRAWLFEHFLHPYPKDSDK  LAKQTGLTR
Sbjct:   370 RALQQLGMIQHPSNNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTR 429

Query:   435 SQVSNWFINARVRLWKPXXXXXXXXXXXXXXKN-GSAENISKTESKESPQLLEQIKSLQA 493
             SQVSNWFINARVRLWKP              KN GS E     +S E      +  S Q 
Sbjct:   430 SQVSNWFINARVRLWKPMVEEMYMEEMKEQAKNMGSMEKTPLDQSNEDSA--SKSTSNQE 487

Query:   494 KAEKSTTQ--ISPTELSNSTMSTSPMGGNFRQQTGFN-LIGPSDHHLEGFVQRSQKKPRN 550
             K+  + T   ++P    +    T   G   R +T    ++ P +       + + K    
Sbjct:   488 KSPMADTNYHMNPNHNGDLEGVTGMQGSPKRLRTSDETMMQPINADFSSNEKLTMKILE- 546

Query:   551 AEMQNSRSSINDXXXXXXXXXXXXEIGRFNPDNHHHHHQLAAPTFHGNN-GVSLTLGLPH 609
              E Q  RS                E+ RF+  +     +L A  + GNN GVSLTLGLPH
Sbjct:   547 -ERQGIRSDGGYPFMGNFGQYQMDEMSRFDVVSDQ---ELMAQRYSGNNNGVSLTLGLPH 602

Query:   610 CENLSLSGSQ-----HNLLSSGQNI---EPDHFCGIETPQHNSHSGTAYES 652
             C++LS +  Q     H+ +  G+ +   E + + G  T    S + TA+ S
Sbjct:   603 CDSLSSTHHQGFMQTHHGIPIGRRVKIGETEEY-GPATINGGSSTTTAHSS 652
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0009610 "response to symbiotic fungus" evidence=IEP;RCA
GO:0010201 "response to continuous far red light stimulus by the high-irradiance response system" evidence=IMP
GO:0000303 "response to superoxide" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009743 "response to carbohydrate stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0048513 "organ development" evidence=RCA
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185183 RPL "AT5G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057856 BLH8 "AT2G27990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SJ56BLH1_ARATHNo assigned EC number0.41740.90010.8882yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017517001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (728 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query671
pfam07526139 pfam07526, POX, Associated with HOX 2e-60
smart00574140 smart00574, POX, domain associated with HOX domain 2e-48
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 1e-20
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 6e-13
smart0038957 smart00389, HOX, Homeodomain 2e-10
pfam0004657 pfam00046, Homeobox, Homeobox domain 3e-06
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  198 bits (505), Expect = 2e-60
 Identities = 69/144 (47%), Positives = 91/144 (63%), Gaps = 5/144 (3%)

Query: 201 SAILGSKYLKAAQELLDEVVKVESMIIKGSDHHHSAKAAQIKETMKMNRESIDGDQELNG 260
           S + GSKYLK AQELL+E   V        D  + A+             S       + 
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVGKNKALDDDSSNGAENGANSSG-----ASSGDGGGSSA 55

Query: 261 TGDSTKSSFELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSA 320
              S  SS EL+TA+RQELQ KKAKL++ML+EV++RY+QY+ QMQ+V+S+FE  AG G+A
Sbjct: 56  GDSSDSSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAA 115

Query: 321 KSYTALALRTISKQFRCLKDAISA 344
           K YTALAL+ +S+ FRCL+DAIS 
Sbjct: 116 KPYTALALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 671
smart00574140 POX domain associated with HOX domains. 100.0
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 99.97
KOG0774334 consensus Transcription factor PBX and related HOX 99.78
KOG0775304 consensus Transcription factor SIX and related HOX 99.6
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.56
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.37
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.33
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.32
KOG0487308 consensus Transcription factor Abd-B, contains HOX 99.0
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 98.96
KOG0843197 consensus Transcription factor EMX1 and related HO 98.87
KOG0489261 consensus Transcription factor zerknullt and relat 98.81
KOG0483198 consensus Transcription factor HEX, contains HOX a 98.79
KOG0488309 consensus Transcription factor BarH and related HO 98.79
KOG0493342 consensus Transcription factor Engrailed, contains 98.68
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 98.63
KOG3802398 consensus Transcription factor OCT-1, contains POU 98.61
KOG0850245 consensus Transcription factor DLX and related pro 98.59
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 98.57
COG5576156 Homeodomain-containing transcription factor [Trans 98.43
KOG0848317 consensus Transcription factor Caudal, contains HO 98.4
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 98.39
KOG0486351 consensus Transcription factor PTX1, contains HOX 98.38
KOG0492246 consensus Transcription factor MSH, contains HOX d 98.37
KOG2251228 consensus Homeobox transcription factor [Transcrip 98.37
KOG0491194 consensus Transcription factor BSH, contains HOX d 98.32
KOG0494332 consensus Transcription factor CHX10 and related H 98.31
KOG0847288 consensus Transcription factor, contains HOX domai 97.98
KOG4577383 consensus Transcription factor LIM3, contains LIM 97.94
KOG2252558 consensus CCAAT displacement protein and related h 97.93
KOG0844408 consensus Transcription factor EVX1, contains HOX 97.81
KOG0490235 consensus Transcription factor, contains HOX domai 97.49
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 97.48
KOG0849354 consensus Transcription factor PRD and related pro 97.48
KOG0773342 consensus Transcription factor MEIS1 and related H 97.22
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 96.18
KOG0490235 consensus Transcription factor, contains HOX domai 94.46
PF0379152 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN 92.27
KOG1146 1406 consensus Homeobox protein [General function predi 89.79
>smart00574 POX domain associated with HOX domains Back     alignment and domain information 
Probab=100.00  E-value=1.4e-41  Score=317.53  Aligned_cols=139  Identities=52%  Similarity=0.691  Sum_probs=112.3

Q ss_pred             cccccccccCccchHHHHHHHHHhccchhhhcCCCCcchhhHHHHHhhhhccCCccCCCCCCCCCCCCCCCCCccCHHHH
Q 005890          197 SSTQSAILGSKYLKAAQELLDEVVKVESMIIKGSDHHHSAKAAQIKETMKMNRESIDGDQELNGTGDSTKSSFELTTAQR  276 (671)
Q Consensus       197 sGya~~l~~SrYLkpAQeLLdE~~~v~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~~ls~~er  276 (671)
                      +||+.+|++|||||||||||||||+|++++.+..... .       .+.........++++...++++++..++|+++||
T Consensus         1 ~g~~~~l~~SkyLk~aQeLLdEf~sv~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~g~s~~~~~~~ls~~~r   72 (140)
T smart00574        1 TGGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQS-G-------NDSPVSTSSNEGGGENLSGGSSSSEVPPLSTAER   72 (140)
T ss_pred             CchhhhccCccccccHHHHHHHHhcccHHhhcccccc-c-------ccccccccccCCCcCCCCCCCCCCCCCCCchhHH
Confidence            4899999999999999999999999999885322111 0       0000001111111222233455667899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhhhHHHHHHHHHHHHhHHHHHHH
Q 005890          277 QELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAIS  343 (671)
Q Consensus       277 ~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ag~~~a~~yt~lal~~iSr~Fr~L~daI~  343 (671)
                      +|+|+||+||+.||+|||+||+|||+|||+|+++||+++|+|+|++||+|||++||||||||||+|.
T Consensus        73 ~e~q~kk~kLl~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~SrhFr~LrdaI~  139 (140)
T smart00574       73 QELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIA  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999996

>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query671
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 5e-13
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 6e-13
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 8e-10
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 1e-09
1lfu_P82 Nmr Solution Stucture Of The Extended Pbx Homeodoma 8e-09
1du6_A64 Solution Structure Of The Truncated Pbx Homeodomain 9e-09
1puf_B73 Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo 1e-08
1b72_B87 Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le 1e-08
1b8i_B63 Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX 3e-08
4egc_A559 Crystal Structure Of Mbp-fused Human Six1 Bound To 1e-05
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 397 LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451
            P+ A  I RAWLF+H  HPYP +  K+QLA+ TGLT  QV+NWFINAR R+ +P
Sbjct: 5   FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain Bound To Dna Length = 82 Back     alignment and structure
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain Length = 64 Back     alignment and structure
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 73 Back     alignment and structure
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 87 Back     alignment and structure
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 63 Back     alignment and structure
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human Eya2 Eya Domain Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query671
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 1e-38
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 1e-36
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 2e-35
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 8e-35
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 5e-33
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 5e-33
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 1e-30
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 8e-27
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 1e-26
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 8e-26
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 7e-08
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 1e-07
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 5e-07
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 1e-06
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 2e-06
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 3e-06
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 5e-06
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 6e-06
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 4e-05
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 1e-04
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 8e-04
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
 Score =  136 bits (345), Expect = 1e-38
 Identities = 30/85 (35%), Positives = 48/85 (56%)

Query: 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449
           A R +R   ++A  IL  + + H  +PYP +  K++LAK+ G+T SQVSNWF N R+R  
Sbjct: 1   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60

Query: 450 KPMVEEMYMEELKEQEKNGSAENIS 474
           K + +      +   +   +A N+S
Sbjct: 61  KNIGKFQEEANIYAAKTAVTATNVS 85
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query671
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.72
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.68
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.68
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.67
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.64
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.62
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.62
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.6
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.6
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.58
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.47
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.46
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.45
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.43
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.41
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.41
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.4
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.4
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.4
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.4
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.4
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.4
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.39
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.39
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.38
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.38
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.38
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.38
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.37
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.37
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.36
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.36
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.36
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.35
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.34
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.34
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.34
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.34
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.34
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.34
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.33
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.32
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.32
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.32
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.31
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.31
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.31
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.31
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.29
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.29
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.29
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.28
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.28
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.28
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.27
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.27
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.27
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.25
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.24
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.23
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.23
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.23
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.22
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.2
2e19_A64 Transcription factor 8; homeobox domain, structura 99.18
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.16
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.15
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.15
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 99.14
1lfb_A99 Liver transcription factor (LFB1); transcription r 99.09
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 99.06
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 99.04
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 99.02
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 99.02
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.9
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 98.88
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 98.74
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 96.37
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 92.95
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
Probab=99.72  E-value=3.7e-18  Score=145.95  Aligned_cols=67  Identities=39%  Similarity=0.778  Sum_probs=61.5

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890          389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE  455 (671)
Q Consensus       389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee  455 (671)
                      .++|+|+.|+++++.+|+.||.+|..||||+.++|..||..|||+..||.+||+|+|+|.|++++++
T Consensus         6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~   72 (83)
T 2dmn_A            6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ   72 (83)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence            3456666799999999999999999999999999999999999999999999999999999887654
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 671
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 5e-19
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 6e-18
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 1e-15
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 3e-08
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 2e-07
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 8e-07
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 2e-06
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 1e-05
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 1e-05
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 5e-05
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 8e-05
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 1e-04
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 1e-04
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 2e-04
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 2e-04
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 3e-04
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 5e-04
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 5e-04
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 6e-04
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 7e-04
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 0.001
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 0.001
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 0.002
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 0.003
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 0.003
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 0.003
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (195), Expect = 5e-19
 Identities = 31/58 (53%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 392 RPQRG-LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
           + +RG LP+ A  ++R+WLF+H  HPYP + +K+Q+A QT LT  QV+NWFINAR R+
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 60
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query671
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.72
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.71
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.68
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.49
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.46
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.46
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.46
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.45
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.44
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.44
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.44
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.43
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.43
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.43
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.42
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.41
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.41
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.4
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.4
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.39
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.39
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.38
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.38
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.35
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.34
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.3
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.3
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.28
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.27
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.26
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.24
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.14
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: pbx1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.1e-18  Score=141.90  Aligned_cols=62  Identities=42%  Similarity=0.769  Sum_probs=58.8

Q ss_pred             CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890          391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM  452 (671)
Q Consensus       391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~  452 (671)
                      +|+|+.|+++++.+|+.||.+|..||||+.++|..||..|||+.+||.+||+|+|+|.|+..
T Consensus         2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~   63 (73)
T d1pufb_           2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI   63 (73)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcccc
Confidence            56777899999999999999999999999999999999999999999999999999998765
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure