Citrus Sinensis ID: 005891

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-
MHKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRSSSTSSSKLLDVQEVQRPQEQHRPPPSDISRPSSRSSRKAPGQLQL
ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHcHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccccccccc
MHKWYSFLFEIIVEQFLLYADLffysetilqqivppvlnsfsdqdsRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITvldsvpdidmlgflPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIknspsvdygRMAEILVQRAASPDEFTRLTAITWINEFVKlggdqlvpyYADILGAilpcisdkeEKIRVVARETNEELRAikadpadgfdvgpiLSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSlvnpagkdLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLktvpsfsfngeqikrtssgnpysqilhsmpsgsqfsedgdvnsdvgsshggiNFASRLQQFEQMQHQHRIHgkaqaqlrssstsssklldvqevqrpqeqhrpppsdisrpssrssrkapgqlql
MHKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEElraikadpadgfdvgPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDnsllekrgaliIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVpsfsfngeqikrtssgnpySQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRSSSTSSSKLLDVQEvqrpqeqhrpppsdisrpssrssrkapgqlql
MHKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMlgflpdfldglfNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQAlnlilltsselselrdllkkslVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWllkalygllmllPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRssstsssKLLDVQEVQRPQEQHrpppsdisrpssrssrKAPGQLQL
**KWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS**EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSF*********************************************************************************************************************
**KWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMA***************LTAITWINEFVKLGGDQLVPYYADILGAIL***************ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLK**LVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPS************************************************FASRLQQFEQ**************************************************************
MHKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFE***************************************************************
*HKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNG****************************************GINFASRLQQFEQMQHQHRIHG*****************************************************
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SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRSSSTSSSKLLDVQEVQRPQEQHRPPPSDISRPSSRSSRKAPGQLQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query671 2.2.26 [Sep-21-2011]
Q68F38782 Protein VAC14 homolog OS= N/A no 0.864 0.741 0.381 1e-122
Q5ZIW5780 Protein VAC14 homolog OS= yes no 0.774 0.666 0.406 1e-122
Q66L58771 Protein VAC14 homolog OS= yes no 0.833 0.725 0.396 1e-121
Q80W92783 Protein VAC14 homolog OS= yes no 0.834 0.715 0.389 1e-120
Q08AM6782 Protein VAC14 homolog OS= yes no 0.834 0.716 0.397 1e-119
Q80WQ2782 Protein VAC14 homolog OS= yes no 0.831 0.713 0.394 1e-119
A2VE70783 Protein VAC14 homolog OS= yes no 0.834 0.715 0.395 1e-119
P87145811 Protein VAC14 homolog OS= yes no 0.800 0.662 0.349 1e-101
Q06708880 Vacuole morphology and in yes no 0.526 0.401 0.324 2e-45
>sp|Q68F38|VAC14_XENLA Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1 Back     alignment and function desciption
 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 276/724 (38%), Positives = 390/724 (53%), Gaps = 144/724 (19%)

Query: 30  LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANV 89
           L++++ PVL  F+D DSR+RYYACEALYNI KV RG  +  FN +FD L KL+AD D NV
Sbjct: 91  LRELIEPVLTCFNDADSRLRYYACEALYNIVKVARGSVLPHFNVLFDGLSKLAADPDPNV 150

Query: 90  QSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149
           +S + LLDRL+KDIVTES +F +  F+PLLRER+   N Y RQF++ WI VL+SVPDI++
Sbjct: 151 KSGSELLDRLLKDIVTESSKFDLVGFVPLLRERIYSNNQYARQFIISWILVLESVPDINL 210

Query: 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASP 208
           L +LP+ LDGLF +L D+S EIR+  + +L EFL+EIK  P SV +  MA ILV    S 
Sbjct: 211 LDYLPEILDGLFQILGDNSKEIRKMCEVSLGEFLKEIKKLPDSVKFAEMANILVIHCQST 270

Query: 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEEL-- 264
           D+  +LTA+TW+ EF++L G  ++PY + IL A+LPC+S  D+++ I+ VA   N+ L  
Sbjct: 271 DDLIQLTAMTWMREFLQLAGRVMLPYSSGILTAVLPCLSYDDRKKNIKEVANVCNQSLMK 330

Query: 265 --------------------------------------RAIKADPADGFD---------- 276
                                                 R + + P    D          
Sbjct: 331 LITPEDDETDEVRQSPATQPDEDFSSNHENSSQHTTYNRTLPSAPDSSLDNANIFAPSSM 390

Query: 277 --------VGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326
                   +  I+ +  R L  S+    TRI  L W+  L  +   ++    + +F  LL
Sbjct: 391 NTCPVSLNLDGIVHVLDRHLHESTTGMMTRICVLKWLYHLYIKTPRKMFRHTDSLFPILL 450

Query: 327 KALSDPSDEVVLLVLEV---------------------------------------HACI 347
           K LSD SDEV+L  LEV                                       H  +
Sbjct: 451 KTLSDESDEVILKDLEVLAEIASSPAGQTDIVTDCNDLPTGMSELHVPVPTKVTQAHGSV 510

Query: 348 AKDLQ----------HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELS 397
            + L+          +F + +V L+  F  +  LLE RGA IIR+LC+LL+AE ++  ++
Sbjct: 511 IRGLECSPSTPTMNSYFHRFMVNLLKRFSNERKLLEIRGAFIIRQLCLLLNAENIFHSMA 570

Query: 398 TILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSP 457
            IL  E DL FA TMVQ LN ILLTSSEL +LR  L K L  P   +LF  LY SWCH+P
Sbjct: 571 DILLREEDLKFASTMVQNLNSILLTSSELFQLRSQL-KDLQTPESCNLFCCLYRSWCHNP 629

Query: 458 MAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGR 517
           +A +SLC L Q Y HA  +IQ   + ++ V FL ++DKL++L+E PIF YLRLQLL+   
Sbjct: 630 VATVSLCFLTQNYQHAYNLIQKFGDLEVTVDFLTEVDKLVQLIECPIFTYLRLQLLDVEN 689

Query: 518 YTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPS 577
             +L++ALYGLLMLLP QS+AF++L  RL+ VP+      Q+ R           H    
Sbjct: 690 NPYLIRALYGLLMLLP-QSSAFQLLSHRLQCVPN-----PQLMRPG---------HKQEE 734

Query: 578 GSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRSSSTSSSKLLDV 637
            S+  ++             I++   LQ FE++Q++H        ++R   + + +LL+ 
Sbjct: 735 SSRAPKEDPAR---------IDYVELLQHFEKVQNKH-------LEIRHQRSGAGELLER 778

Query: 638 QEVQ 641
           + VQ
Sbjct: 779 RLVQ 782
The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Acts as a positive activator of PIKfyve kinase activity.
Xenopus laevis (taxid: 8355)
>sp|Q5ZIW5|VAC14_CHICK Protein VAC14 homolog OS=Gallus gallus GN=VAC14 PE=2 SV=1 Back     alignment and function description
>sp|Q66L58|VAC14_DANRE Protein VAC14 homolog OS=Danio rerio GN=vac14 PE=2 SV=1 Back     alignment and function description
>sp|Q80W92|VAC14_RAT Protein VAC14 homolog OS=Rattus norvegicus GN=Vac14 PE=1 SV=1 Back     alignment and function description
>sp|Q08AM6|VAC14_HUMAN Protein VAC14 homolog OS=Homo sapiens GN=VAC14 PE=1 SV=1 Back     alignment and function description
>sp|Q80WQ2|VAC14_MOUSE Protein VAC14 homolog OS=Mus musculus GN=Vac14 PE=1 SV=1 Back     alignment and function description
>sp|A2VE70|VAC14_BOVIN Protein VAC14 homolog OS=Bos taurus GN=VAC14 PE=2 SV=1 Back     alignment and function description
>sp|P87145|VAC14_SCHPO Protein VAC14 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.03 PE=3 SV=1 Back     alignment and function description
>sp|Q06708|VAC14_YEAST Vacuole morphology and inheritance protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC14 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query671
255570069728 conserved hypothetical protein [Ricinus 0.949 0.875 0.903 0.0
147782112727 hypothetical protein VITISV_014540 [Viti 0.950 0.877 0.883 0.0
225424372727 PREDICTED: protein VAC14 homolog [Vitis 0.950 0.877 0.883 0.0
224101889725 predicted protein [Populus trichocarpa] 0.949 0.878 0.891 0.0
356524533722 PREDICTED: protein VAC14 homolog [Glycin 0.943 0.876 0.873 0.0
224108275724 predicted protein [Populus trichocarpa] 0.947 0.878 0.860 0.0
449449244738 PREDICTED: protein VAC14 homolog [Cucumi 0.947 0.861 0.836 0.0
356502378724 PREDICTED: protein VAC14 homolog [Glycin 0.946 0.877 0.850 0.0
356511291691 PREDICTED: protein VAC14 homolog [Glycin 0.895 0.869 0.900 0.0
357521307736 VAC14-like protein [Medicago truncatula] 0.940 0.857 0.824 0.0
>gi|255570069|ref|XP_002525997.1| conserved hypothetical protein [Ricinus communis] gi|223534729|gb|EEF36421.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1152 bits (2981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/645 (90%), Positives = 605/645 (93%), Gaps = 8/645 (1%)

Query: 30  LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANV 89
           L+QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI+FFNQIFDALCKLSADSDANV
Sbjct: 89  LEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANV 148

Query: 90  QSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149
           QSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM
Sbjct: 149 QSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 208

Query: 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD 209
           LGFLPDFLDGLFNMLSDSSHEIRQQADSAL EFLQEIKNSPSVDYGRMAEILVQRAASPD
Sbjct: 209 LGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASPD 268

Query: 210 EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269
           EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA
Sbjct: 269 EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 328

Query: 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329
           DPA+GF VGPILSIA RQLSSEWEATRIEALHWIS LLNRHR+EVL FLNDIFDTLLKAL
Sbjct: 329 DPAEGFVVGPILSIARRQLSSEWEATRIEALHWISNLLNRHRSEVLCFLNDIFDTLLKAL 388

Query: 330 SDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389
           SDPSDEVVLLVLE+HACIAKD  HFRQLVVFLVHNFR+D SLLEKRGALIIRRLCVLLDA
Sbjct: 389 SDPSDEVVLLVLEIHACIAKDPLHFRQLVVFLVHNFRIDISLLEKRGALIIRRLCVLLDA 448

Query: 390 ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSL 449
           ERVYRELSTILEGEADLDFA  MVQALNLILLTSSEL+ELR+LLK+SLVNPAGKDLFVSL
Sbjct: 449 ERVYRELSTILEGEADLDFASIMVQALNLILLTSSELAELRNLLKQSLVNPAGKDLFVSL 508

Query: 450 YASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLR 509
           YASWCHSPMAIISLCLLAQTY HAS VIQSLVEED+NVKFLVQLDKLIRLLETPIFAYLR
Sbjct: 509 YASWCHSPMAIISLCLLAQTYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPIFAYLR 568

Query: 510 LQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYS 569
           LQLLEPGRYTWLLKAL GLLMLLPQ+SAAFKILRTRLKTVPS+SFNG+QIKRT SGNPYS
Sbjct: 569 LQLLEPGRYTWLLKALNGLLMLLPQKSAAFKILRTRLKTVPSYSFNGDQIKRTPSGNPYS 628

Query: 570 QILHSMPSGSQFSEDGDVNSDVGSS--HGGINFASRLQQFEQMQHQHRIHGKAQAQLRSS 627
           QILH +PSGSQ SEDGDVN D G+S  H GINF+SRLQQFEQMQ QHR+H KAQAQ R++
Sbjct: 629 QILHHIPSGSQTSEDGDVNQDTGNSSFHNGINFSSRLQQFEQMQQQHRMHAKAQAQSRNN 688

Query: 628 STSSSKLLDVQEVQRPQEQHRP-PPSDISRPSSRSSRKAPGQLQL 671
            T SSK     EV RP+E   P   SDI+RP SRSSR+ PGQLQL
Sbjct: 689 CTFSSK-----EVPRPEEPRGPSSASDINRPPSRSSRRGPGQLQL 728

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147782112|emb|CAN65293.1| hypothetical protein VITISV_014540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424372|ref|XP_002284995.1| PREDICTED: protein VAC14 homolog [Vitis vinifera] gi|297737634|emb|CBI26835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101889|ref|XP_002312461.1| predicted protein [Populus trichocarpa] gi|222852281|gb|EEE89828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356524533|ref|XP_003530883.1| PREDICTED: protein VAC14 homolog [Glycine max] Back     alignment and taxonomy information
>gi|224108275|ref|XP_002314784.1| predicted protein [Populus trichocarpa] gi|222863824|gb|EEF00955.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449244|ref|XP_004142375.1| PREDICTED: protein VAC14 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502378|ref|XP_003519996.1| PREDICTED: protein VAC14 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356511291|ref|XP_003524360.1| PREDICTED: protein VAC14 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357521307|ref|XP_003630942.1| VAC14-like protein [Medicago truncatula] gi|355524964|gb|AET05418.1| VAC14-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query671
TAIR|locus:2065423744 AT2G01690 "AT2G01690" [Arabido 0.904 0.815 0.766 9.5e-240
DICTYBASE|DDB_G0289233801 DDB_G0289233 "VAC14 family pro 0.564 0.473 0.464 4.4e-109
UNIPROTKB|F1NWG6780 VAC14 "Protein VAC14 homolog" 0.368 0.316 0.484 2.4e-104
UNIPROTKB|Q5ZIW5780 VAC14 "Protein VAC14 homolog" 0.368 0.316 0.484 6.3e-104
MGI|MGI:2157980782 Vac14 "Vac14 homolog (S. cerev 0.381 0.327 0.463 8.9e-103
UNIPROTKB|Q08AM6782 VAC14 "Protein VAC14 homolog" 0.368 0.315 0.468 1.4e-102
UNIPROTKB|F1MJZ1783 VAC14 "Protein VAC14 homolog" 0.362 0.310 0.473 3e-102
UNIPROTKB|A2VE70783 VAC14 "Protein VAC14 homolog" 0.362 0.310 0.473 3.8e-102
ZFIN|ZDB-GENE-040912-82771 vac14 "vac14 homolog (S. cerev 0.366 0.319 0.460 3.8e-102
UNIPROTKB|E2RB06783 VAC14 "Uncharacterized protein 0.362 0.310 0.473 1.3e-101
TAIR|locus:2065423 AT2G01690 "AT2G01690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2311 (818.6 bits), Expect = 9.5e-240, P = 9.5e-240
 Identities = 475/620 (76%), Positives = 513/620 (82%)

Query:    30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANV 89
             L+QIVPPV+NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN+IFDALCKLSADSDANV
Sbjct:    89 LEQIVPPVINSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNKIFDALCKLSADSDANV 148

Query:    90 QSAAHLLDRLVK-DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148
             QSAAHLLDRLVK DIVTESDQFSIEEFIPLL+ERMNVLNPYVRQFLVGWITVLDSVPDID
Sbjct:   149 QSAAHLLDRLVKQDIVTESDQFSIEEFIPLLKERMNVLNPYVRQFLVGWITVLDSVPDID 208

Query:   149 MXXXXXXXXXXXXNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208
             M            NMLSDSSHEIRQQADSAL EFLQEIKNSPSVDYGRMAEILVQRAASP
Sbjct:   209 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASP 268

Query:   209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268
             DEFTRLTAITWINEFVKLGGDQLV YYADILGAILPCISDKEEKIRVVARETNEELR+I 
Sbjct:   269 DEFTRLTAITWINEFVKLGGDQLVRYYADILGAILPCISDKEEKIRVVARETNEELRSIH 328

Query:   269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328
              +P+DGFDVG ILS+A RQLSSE+EATRIEAL+WISTLLN+HRTEVL FLNDIFDTLLKA
Sbjct:   329 VEPSDGFDVGAILSVARRQLSSEFEATRIEALNWISTLLNKHRTEVLCFLNDIFDTLLKA 388

Query:   329 LSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388
             LSD SD+VVLLVLEVHA +AKD QHFRQL+VFLVHNFR DNSLLE+RGALI+RR+CVLLD
Sbjct:   389 LSDSSDDVVLLVLEVHAGVAKDPQHFRQLIVFLVHNFRADNSLLERRGALIVRRMCVLLD 448

Query:   389 AERVYRELSTILEGEADLDFACTMVQAXXXXXXXXXXXXXXXXXXXXXXVNPAGKDLFVS 448
             AERVYRELSTILEGE +LDFA TMVQA                      VN  GK+LFV+
Sbjct:   449 AERVYRELSTILEGEDNLDFASTMVQALNLILLTSPELSKLRELLKGSLVNREGKELFVA 508

Query:   449 LYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYL 508
             LY SWCHSPMAIISLCLLAQ Y HAS VIQSLVEED+NVKFLVQLDKLIRLLETPIF YL
Sbjct:   509 LYTSWCHSPMAIISLCLLAQAYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPIFTYL 568

Query:   509 RLQLLEPGRYTWXXXXXXXXXXXXPQQSAAFKILRTRLKTVPSFSFN-GEQIKRTSSGNP 567
             RLQLLEPGRYTW            PQQSAAFKILRTRLKTVP++SF+ G QI R +SG P
Sbjct:   569 RLQLLEPGRYTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPTYSFSTGNQIGRATSGVP 628

Query:   568 YSQILHSMPSGSQFSEDGDVNSD-VGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRX 626
             +SQ  H        +EDGD+  D + SSH GINFA RLQQFE +Q+ HR  G+A+ ++  
Sbjct:   629 FSQYKHQ-------NEDGDLEDDNINSSHQGINFAVRLQQFENVQNLHR--GQARTRVNY 679

Query:   627 XXXXXXKLLDVQEVQRPQEQ 646
                        +EV+R +EQ
Sbjct:   680 SYHSSSSSTS-KEVRRSEEQ 698
GO:0008150 "biological_process" evidence=ND
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
DICTYBASE|DDB_G0289233 DDB_G0289233 "VAC14 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWG6 VAC14 "Protein VAC14 homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIW5 VAC14 "Protein VAC14 homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2157980 Vac14 "Vac14 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q08AM6 VAC14 "Protein VAC14 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJZ1 VAC14 "Protein VAC14 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE70 VAC14 "Protein VAC14 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-82 vac14 "vac14 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB06 VAC14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VIII001200
SubName- Full=Putative uncharacterized protein; (725 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query671
pfam11916181 pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-te 1e-88
pfam1275597 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding 3e-41
pfam0298531 pfam02985, HEAT, HEAT repeat 0.001
>gnl|CDD|221312 pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p binding Back     alignment and domain information 
 Score =  273 bits (701), Expect = 1e-88
 Identities = 115/183 (62%), Positives = 141/183 (77%), Gaps = 2/183 (1%)

Query: 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELS 427
           D  LLE+RG LIIR+LC+LL+AERVYR L++ILE E DL+FA  MVQ LN ILLTS ELS
Sbjct: 1   DRKLLERRGNLIIRQLCLLLNAERVYRTLASILEEEEDLEFASKMVQTLNTILLTSPELS 60

Query: 428 ELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNV 487
           ELR  L+  L   A + LF SLY SWCH+P++ +SLCLL+Q Y HA  ++QSL E ++ V
Sbjct: 61  ELRKKLRN-LTLKADQSLFSSLYRSWCHNPVSALSLCLLSQAYEHAYNLLQSLGELEITV 119

Query: 488 KFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLK 547
            FLVQ+DKL++LLE+P+F YLRLQLLEP +Y +L K LYGLLMLLP QS AF  LR RL+
Sbjct: 120 DFLVQIDKLVQLLESPVFTYLRLQLLEPEKYPYLYKCLYGLLMLLP-QSTAFNTLRNRLQ 178

Query: 548 TVP 550
            VP
Sbjct: 179 CVP 181

Vac14 is a scaffold for the Fab1 kinase complex, a complex that allows for the dynamic interconversion of PI3P and PI(3,5)P2p (phosphoinositide phosphate (PIP) lipids, that are generated transiently on the cytoplasmic face of selected intracellular membranes). This interconversion is regulated by at least five proteins in yeast: the lipid kinase Fab1p, lipid phosphatase Fig4p, the Fab1p activator Vac7p, the Fab1p inhibitor Atg18p, and Vac14p, a protein required for the activity of both Fab1p and Fig4p. The C-terminal region of Vac14 binds to Fig4p. The full length Vac14 in yeasts is likely to be a protein carrying a succession of HEAT repeats, most of which have now degenerated. This regulatory system is crucial for the proper functioning of the mammalian nervous system. Length = 181
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region Back     alignment and domain information
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 671
KOG0212675 consensus Uncharacterized conserved protein [Funct 100.0
PF11916182 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.97
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.85
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.84
KOG1242569 consensus Protein containing adaptin N-terminal re 99.73
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.69
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.69
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.64
KOG1242569 consensus Protein containing adaptin N-terminal re 99.54
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.51
PRK09687280 putative lyase; Provisional 99.49
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.47
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.45
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.44
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.34
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.34
KOG18241233 consensus TATA-binding protein-interacting protein 99.34
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.32
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.3
PRK09687280 putative lyase; Provisional 99.25
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.21
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.15
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.13
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.09
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.09
PTZ00429746 beta-adaptin; Provisional 99.08
PTZ00429746 beta-adaptin; Provisional 99.07
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.07
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.07
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.03
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.96
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.96
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.9
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.87
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.87
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.82
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 98.82
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.8
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.69
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 98.61
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.58
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.5
KOG12481176 consensus Uncharacterized conserved protein [Funct 98.4
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.39
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.37
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.37
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 98.36
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.36
TIGR02270410 conserved hypothetical protein. Members are found 98.31
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.28
KOG12481176 consensus Uncharacterized conserved protein [Funct 98.25
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.19
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.12
KOG2025 892 consensus Chromosome condensation complex Condensi 98.03
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 98.01
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.99
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.98
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.96
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.93
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.9
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.9
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.88
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 97.83
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.81
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.8
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.8
KOG22741005 consensus Predicted importin 9 [Intracellular traf 97.77
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.77
KOG2025 892 consensus Chromosome condensation complex Condensi 97.73
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.72
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.72
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 97.71
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.67
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.67
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.66
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.62
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.6
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.52
TIGR02270410 conserved hypothetical protein. Members are found 97.5
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.46
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.46
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.44
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.37
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.37
KOG2956516 consensus CLIP-associating protein [General functi 97.35
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.35
PF05804708 KAP: Kinesin-associated protein (KAP) 97.24
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.21
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 97.18
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.14
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.07
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 97.03
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 97.01
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 96.98
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.97
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.89
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 96.8
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.76
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.66
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 96.66
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.64
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.58
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.57
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 96.57
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.54
KOG2032533 consensus Uncharacterized conserved protein [Funct 96.54
PF05004309 IFRD: Interferon-related developmental regulator ( 96.52
PF05004309 IFRD: Interferon-related developmental regulator ( 96.47
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 96.43
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 96.42
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 96.42
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.42
KOG4653982 consensus Uncharacterized conserved protein [Funct 96.41
KOG0413 1529 consensus Uncharacterized conserved protein relate 96.36
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 96.32
KOG4653982 consensus Uncharacterized conserved protein [Funct 96.31
PF05804708 KAP: Kinesin-associated protein (KAP) 96.23
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 96.2
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.19
KOG2956516 consensus CLIP-associating protein [General functi 96.12
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 96.1
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 96.07
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 96.06
KOG1293678 consensus Proteins containing armadillo/beta-caten 96.05
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.0
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 95.89
KOG0414 1251 consensus Chromosome condensation complex Condensi 95.79
KOG04141251 consensus Chromosome condensation complex Condensi 95.65
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.64
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 95.62
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.56
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.54
PF05536543 Neurochondrin: Neurochondrin 95.53
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 95.49
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 95.46
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 95.46
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.28
KOG1293678 consensus Proteins containing armadillo/beta-caten 95.16
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 95.11
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.05
KOG45241014 consensus Uncharacterized conserved protein [Funct 95.04
KOG4413524 consensus 26S proteasome regulatory complex, subun 95.04
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 95.0
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 94.98
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 94.95
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 94.88
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 94.81
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.81
COG5098 1128 Chromosome condensation complex Condensin, subunit 94.7
KOG1243690 consensus Protein kinase [General function predict 94.7
PF14500262 MMS19_N: Dos2-interacting transcription regulator 94.46
KOG4413524 consensus 26S proteasome regulatory complex, subun 94.3
KOG4535728 consensus HEAT and armadillo repeat-containing pro 94.19
KOG1243690 consensus Protein kinase [General function predict 94.16
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 94.07
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.06
PF08167165 RIX1: rRNA processing/ribosome biogenesis 94.01
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 93.56
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 93.47
KOG2933334 consensus Uncharacterized conserved protein [Funct 93.43
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 93.33
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 93.28
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 93.09
KOG2149393 consensus Uncharacterized conserved protein [Funct 93.06
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 93.04
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 92.9
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 92.89
KOG2062929 consensus 26S proteasome regulatory complex, subun 92.82
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 92.26
KOG2933334 consensus Uncharacterized conserved protein [Funct 92.04
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 92.02
COG50981128 Chromosome condensation complex Condensin, subunit 91.93
COG5656970 SXM1 Importin, protein involved in nuclear import 91.76
KOG2062929 consensus 26S proteasome regulatory complex, subun 91.6
KOG0567289 consensus HEAT repeat-containing protein [General 91.52
COG5116926 RPN2 26S proteasome regulatory complex component [ 91.44
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 91.4
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 91.18
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 90.92
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 90.9
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 90.61
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.54
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 90.48
PF1036392 DUF2435: Protein of unknown function (DUF2435) 90.47
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 90.31
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 90.19
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 90.15
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 90.05
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 89.64
PF05536543 Neurochondrin: Neurochondrin 89.41
PF1036392 DUF2435: Protein of unknown function (DUF2435) 89.21
PF14663115 RasGEF_N_2: Rapamycin-insensitive companion of mTO 89.16
KOG2137700 consensus Protein kinase [Signal transduction mech 89.07
KOG2149393 consensus Uncharacterized conserved protein [Funct 89.0
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 88.97
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 88.96
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 88.94
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 88.84
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 88.57
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 88.57
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 88.56
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 87.93
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 87.82
KOG2081559 consensus Nuclear transport regulator [Intracellul 87.71
KOG2973353 consensus Uncharacterized conserved protein [Funct 87.63
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 87.42
KOG2137700 consensus Protein kinase [Signal transduction mech 87.31
cd03561133 VHS VHS domain family; The VHS domain is present i 87.16
COG5116926 RPN2 26S proteasome regulatory complex component [ 86.92
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 86.89
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 86.65
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 86.31
KOG0567289 consensus HEAT repeat-containing protein [General 86.29
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 86.02
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 85.8
KOG3687 1697 consensus Tuberin - Rap/ran-GTPase-activating prot 85.64
KOG18371621 consensus Uncharacterized conserved protein [Funct 85.51
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 85.18
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 84.88
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 84.5
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 84.34
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 84.3
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 84.24
smart00638574 LPD_N Lipoprotein N-terminal Domain. 84.03
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 83.79
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 83.76
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 83.5
PF14911373 MMS22L_C: S-phase genomic integrity recombination 83.22
KOG1877 819 consensus Putative transmembrane protein cmp44E [G 83.17
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 81.83
KOG45241014 consensus Uncharacterized conserved protein [Funct 81.68
smart00638574 LPD_N Lipoprotein N-terminal Domain. 81.49
KOG2153704 consensus Protein involved in the nuclear export o 80.44
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 80.26
KOG18371621 consensus Uncharacterized conserved protein [Funct 80.1
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-151  Score=1213.18  Aligned_cols=579  Identities=53%  Similarity=0.855  Sum_probs=546.0

Q ss_pred             HHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 005891           20 ADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRL   99 (671)
Q Consensus        20 ~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~Ldrl   99 (671)
                      .++|.+...|++.|+|||+.||+|+|.+|||||||++|||+|+++|+++.|||+||++||++.+|+|++||+||+++||+
T Consensus        72 iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRL  151 (675)
T KOG0212|consen   72 IALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRL  151 (675)
T ss_pred             HHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHH
Confidence            34677778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccc-hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHH
Q 005891          100 VKDIVTESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA  178 (671)
Q Consensus       100 lKdIv~e~~-~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~  178 (671)
                      +||||++.+ +|+++.|||+|.++||+.||.+|+|+++||++++++|+.+|+.|+|+|++|||+||+|++.+||..+..+
T Consensus       152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~  231 (675)
T KOG0212|consen  152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL  231 (675)
T ss_pred             HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            999999987 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcH-hHHHH
Q 005891          179 LWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE-KIRVV  256 (671)
Q Consensus       179 L~~ll~~I~~~~~~-d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~-eIR~~  256 (671)
                      |++|+++|.++|.. |+++++++++.+++++++++|+.|+.||.+|++++|.++++|+++++.++|||++|.++ .+++.
T Consensus       232 l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~  311 (675)
T KOG0212|consen  232 LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEY  311 (675)
T ss_pred             HHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHH
Confidence            99999999999987 99999999999999999999999999999999999999999999999999999999988 69999


Q ss_pred             HHHHHHHHHHhcCCC--CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCH
Q 005891          257 ARETNEELRAIKADP--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD  334 (671)
Q Consensus       257 A~~~n~~L~~~i~~~--~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~  334 (671)
                      |..+|+.+++.+.+.  .+++|++++++++.+++.++.++||++||+|+.+++.+.|+++..|.+.+|++||++|+|+++
T Consensus       312 a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd  391 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD  391 (675)
T ss_pred             HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh
Confidence            999999999988754  334999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHH
Q 005891          335 EVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTM  412 (671)
Q Consensus       335 eV~~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~m  412 (671)
                      +|+..++.+++.|+.  +..++.+|+..||++|+.|+++++.||++||||||..|+||+||+.+|+||+.|+|++||++|
T Consensus       392 ~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstM  471 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTM  471 (675)
T ss_pred             HHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHH
Confidence            999999999999994  455789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHH
Q 005891          413 VQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ  492 (671)
Q Consensus       413 Vq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~e~~~~~l~q  492 (671)
                      ||+||+||+||+||++||++||+ +.+.+++++|+|||++|||||||++|||||||||+|||++++.||++|+||++|+|
T Consensus       472 V~~Ln~iLlTStELf~LR~~Lk~-lsn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~~eitvd~L~e  550 (675)
T KOG0212|consen  472 VQALNTILLTSTELFQLRNKLKD-LSNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFADVEITVDFLVE  550 (675)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHh-ccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            99999999999999999999999 79999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhHHHHHhhcCCCCChhHHHHHHHHhhhccCcchhhHHHHhhhcccCCcccccccccccCCCCCccccc
Q 005891          493 LDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQIL  572 (671)
Q Consensus       493 ~d~LvqllEspif~~lRl~Ll~~~~~p~L~k~L~gllmlLPq~s~af~~L~~RL~~v~~~~~~~~~~~~~~~~~~~~~~~  572 (671)
                      +||||||+|||||||||||||||.+||||.|||||||||||| |+||.||++||+|||++......  +...+.|++   
T Consensus       551 lDKLVqLiEsPIFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ-S~AF~tL~~RLqcvp~~~~~~~~--~~~~~~p~s---  624 (675)
T KOG0212|consen  551 LDKLVQLIESPIFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ-SSAFQTLRHRLQCVPNPVGNQTI--DAREAVPFS---  624 (675)
T ss_pred             HHHHHHHHhcchHHHHHHHHhccccCchHHHHHHHHHHHccc-HHHHHHHHHHHhcCCchhhccch--hhhccCCcc---
Confidence            999999999999999999999999999999999999999999 99999999999999999653211  111111111   


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhHHHhhh
Q 005891          573 HSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQL  624 (671)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~~~q~~~~~~~~~~~~~  624 (671)
                                        .+.+..+|+|++|++||++||++|+..+ .+|..
T Consensus       625 ------------------~~~~~~~idf~~LlqhFkavq~~h~~~r-~~R~~  657 (675)
T KOG0212|consen  625 ------------------QKADSPGIDFAELLQHFKAVQNKHLEQR-EQRSG  657 (675)
T ss_pred             ------------------cccCCCCCChHHHHHHHHHHHHHHHHHH-HHHhc
Confidence                              1334478999999999999999998844 34443

>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal Back     alignment and domain information
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only] Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query671
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-21
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-15
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-18
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-16
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-11
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-08
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-11
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 7e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-10
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 6e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-04
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-08
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 4e-06
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 8e-08
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 2e-04
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 2e-07
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 3e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 6e-06
1qgr_A876 Protein (importin beta subunit); transport recepto 3e-05
1qgr_A876 Protein (importin beta subunit); transport recepto 2e-04
1qgr_A 876 Protein (importin beta subunit); transport recepto 5e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 9e-05
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 7e-04
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
 Score = 95.5 bits (237), Expect = 9e-21
 Identities = 56/328 (17%), Positives = 109/328 (33%), Gaps = 15/328 (4%)

Query: 26  SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS 85
            E +   ++P +  +  D+  RVRY   +    + K V  +       +  A   L  D 
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC 293

Query: 86  DANV-QSAAHLLDRLVKDIVTES-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS 143
           +A V  +A+H +    +++  +  +   + + +P ++E ++  N +V+  L   I  L  
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL-- 351

Query: 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ 203
            P +     +   L      L D   E+R    S L    + I          +   +V+
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS--LLPAIVE 409

Query: 204 RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263
            A       RL  I ++       G +       +    +  + D    IR  A      
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK--LNSLCMAWLVDHVYAIREAATSN--- 464

Query: 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 323
           L+ +       +    I+              R+  L  I+ L      ++      +  
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLP 522

Query: 324 TLLKALSDPSDEVVLLVLEVHACIAKDL 351
           T+L+   DP   V   V +    I   L
Sbjct: 523 TVLRMAGDPVANVRFNVAKSLQKIGPIL 550
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query671
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.94
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.92
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.92
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.91
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.88
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.88
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.87
1qgr_A876 Protein (importin beta subunit); transport recepto 99.86
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.86
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.85
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.85
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.74
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.7
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.7
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.68
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.66
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.65
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.65
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.64
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.63
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.62
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.6
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.58
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.57
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.56
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.53
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.51
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.5
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.49
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.46
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.44
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.43
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.43
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.43
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.41
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.4
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.39
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.36
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.36
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.35
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.35
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.35
2x19_B963 Importin-13; nuclear transport, protein transport; 99.34
2x19_B 963 Importin-13; nuclear transport, protein transport; 99.34
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.33
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.32
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.3
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.3
2x1g_F971 Cadmus; transport protein, developmental protein, 99.29
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.29
2x1g_F971 Cadmus; transport protein, developmental protein, 99.28
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.28
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.26
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.26
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.26
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.17
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.12
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.11
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.1
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.01
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.98
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.95
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 98.91
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 98.86
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.83
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.8
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.78
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 98.75
3nmz_A458 APC variant protein; protein-protein complex, arma 98.71
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.7
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 98.63
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.63
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.56
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.55
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.52
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 98.51
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.41
3nmz_A458 APC variant protein; protein-protein complex, arma 98.38
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.38
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.31
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.31
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.26
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.21
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.21
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.17
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.1
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 98.08
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 98.07
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.05
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.03
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.0
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.98
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.94
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.83
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.8
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.71
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 97.58
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 97.49
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.41
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.3
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.28
3grl_A651 General vesicular transport factor P115; vesicle t 97.24
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.85
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.73
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.51
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.49
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.44
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 96.14
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.46
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.21
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.12
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.06
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 94.82
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 94.18
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 93.9
3grl_A 651 General vesicular transport factor P115; vesicle t 93.71
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 92.08
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 91.78
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 89.7
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 89.35
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 88.77
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 83.92
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 83.32
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 81.63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=99.94  E-value=3.4e-24  Score=254.16  Aligned_cols=368  Identities=16%  Similarity=0.179  Sum_probs=306.6

Q ss_pred             HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891           28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE  106 (671)
Q Consensus        28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e  106 (671)
                      .....|.+.++.+++|+++.||..+++++..|++.-   ....|+++++.|..+++++++.+|.+| ..|..++++....
T Consensus        86 ~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~  162 (852)
T 4fdd_A           86 GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI  162 (852)
T ss_dssp             HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            345678899999999999999999999999998753   234689999999999999999999999 8888888876542


Q ss_pred             cc----hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 005891          107 SD----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF  182 (671)
Q Consensus       107 ~~----~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~l  182 (671)
                      ..    ...++.++|.+.+.+.+.++.||..++.++..+....+..+..+++.+++.+++.+.|++.+||+.|+.+|..+
T Consensus       163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l  242 (852)
T 4fdd_A          163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML  242 (852)
T ss_dssp             HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            11    12378899999999999999999999999998887777778899999999999999999999999999999999


Q ss_pred             HHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--cCcCcccchHhHHHHHhhhhc-----------C-
Q 005891          183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCIS-----------D-  248 (671)
Q Consensus       183 l~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l--~~~~l~pflp~LLp~LL~~Ls-----------d-  248 (671)
                      .+..+.....+++.+++.++..+.+.++.+|..|++++..+++.  ....+.||+++++|.+++.|.           | 
T Consensus       243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~  322 (852)
T 4fdd_A          243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  322 (852)
T ss_dssp             HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence            98665432345788999999999999999999999977777653  223357899999999999983           3 


Q ss_pred             ----------CcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh
Q 005891          249 ----------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL  318 (671)
Q Consensus       249 ----------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l  318 (671)
                                .+..+|..|.++.+.+.+..++    .-+..+++.+.+.+.+++|..|.+|+.+++.+.+++++.+.+++
T Consensus       323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l  398 (852)
T 4fdd_A          323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL  398 (852)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                      1234799999998888877653    23578889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh---
Q 005891          319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA---  389 (671)
Q Consensus       319 ~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~------~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~---  389 (671)
                      +.++|.+++.++|+++.||..++|+++++++      ...|+..++..|++.+.++..-++..+...+.++|...+.   
T Consensus       399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~  478 (852)
T 4fdd_A          399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV  478 (852)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH
Confidence            9999999999999999999999999999984      3578999999999999777666677767777888766544   


Q ss_pred             ---HHHHHHHHHhhcc
Q 005891          390 ---ERVYRELSTILEG  402 (671)
Q Consensus       390 ---E~Iy~~la~iL~~  402 (671)
                         +.+...|...+.+
T Consensus       479 ~~l~~ll~~L~~~l~~  494 (852)
T 4fdd_A          479 PYLAYILDTLVFAFSK  494 (852)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence               2445555555543
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 671
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-14
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-13
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 8e-13
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-12
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-10
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 5e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 4e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 7e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 4e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-07
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 8e-05
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-04
d1wa5c_ 959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 2e-04
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 0.001
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 0.002
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-14
 Identities = 55/457 (12%), Positives = 138/457 (30%), Gaps = 19/457 (4%)

Query: 21  DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK 80
           D     +   +++V  +L    D++  V+  A + L  +   V+   +     I D LC 
Sbjct: 34  DSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE---TIVDTLCT 90

Query: 81  LSADSDANVQSAAHLLDRLVKDIVTESDQFS------IEEFIPLLRERM-NVLNPYVRQF 133
                   ++  + +  + V   +  +   S       ++    L   +    +  V+  
Sbjct: 91  NMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLE 150

Query: 134 LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193
            +  +  + S     ++ F P  L  L   L+     +R++   AL   +    N   VD
Sbjct: 151 ALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD 210

Query: 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253
              +  +L + + +    T  T I  I    +  G ++  Y   I+  ++   +  ++++
Sbjct: 211 L--IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDEL 268

Query: 254 RVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE 313
           R    +  E              V  I++I  + L+ +      +     + +      +
Sbjct: 269 REYCIQAFESFVRRCPKEVYPH-VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDD 327

Query: 314 VLHFLNDIF-DTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR-----V 367
                +D + D    +          L   V        + ++ +   L+  F+     V
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387

Query: 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELS 427
              +     +L+ +   V                          +V+AL+  +   S  +
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447

Query: 428 ELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLC 464
                   + +                   +  ++  
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 484
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query671
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.89
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.87
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.82
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.82
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.74
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.68
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.67
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.65
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.63
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.62
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.61
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.6
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.5
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.43
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.31
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.28
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.23
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.23
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.15
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.07
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.05
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.03
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.88
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.83
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.52
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.46
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.46
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.32
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.27
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.18
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 98.07
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.87
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 97.61
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 95.01
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 92.91
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 91.25
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 86.34
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 86.16
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 84.94
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 84.75
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 82.77
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 82.53
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-21  Score=218.18  Aligned_cols=329  Identities=18%  Similarity=0.223  Sum_probs=268.2

Q ss_pred             HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891           27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT  105 (671)
Q Consensus        27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~  105 (671)
                      ..+...++|.+...+.|++++||.++++++.++++....+..  ..++++.+.+++.|+++.||.+| ..+..+++.+..
T Consensus       237 ~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~  314 (588)
T d1b3ua_         237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA  314 (588)
T ss_dssp             HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhh--hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Confidence            455677889999999999999999999999999887665543  35789999999999999999999 778877775543


Q ss_pred             cc-chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891          106 ES-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ  184 (671)
Q Consensus       106 e~-~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~  184 (671)
                      +. ....++.++|.+...+.+.++.+|..+..++..+....+.+  .+++.+++.+.+.+.|++++||..+..+++.+..
T Consensus       315 ~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~  392 (588)
T d1b3ua_         315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh--HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence            22 23347899999999999999999999998888776544432  3455667777779999999999999999999988


Q ss_pred             HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891          185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL  264 (671)
Q Consensus       185 ~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L  264 (671)
                      .++..  .-.+.++|.+.....+++|.+|..++..+..+++..+...  |.+.+.|.++.++.|+...||..|.++.+.+
T Consensus       393 ~~~~~--~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l  468 (588)
T d1b3ua_         393 VIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKL  468 (588)
T ss_dssp             HSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hcchh--hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence            76420  1147788999999999999999999999999998877665  5788999999999999999999999999998


Q ss_pred             HHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005891          265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH  344 (671)
Q Consensus       265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lL  344 (671)
                      .+..+.   .+....+++.+.+.+.++++..|.+++.++..+.+.++.+..  .+.++|.+++.++|+.|+||..+++++
T Consensus       469 ~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~--~~~ilp~ll~~~~D~v~nVR~~a~~~l  543 (588)
T d1b3ua_         469 VEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT--TKHMLPTVLRMAGDPVANVRFNVAKSL  543 (588)
T ss_dssp             HHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHH--HHHTHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHhCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            877653   233467889999999999999999999999999999887754  678999999999999999999999999


Q ss_pred             HHHhh--ccchHHHHHHHHHhhcccc
Q 005891          345 ACIAK--DLQHFRQLVVFLVHNFRVD  368 (671)
Q Consensus       345 a~Is~--~~~~F~~fm~~LL~lf~~d  368 (671)
                      .+++.  +++.+..-+..+++.+.+|
T Consensus       544 ~~i~~~~~~~~~~~~i~~~l~~L~~D  569 (588)
T d1b3ua_         544 QKIGPILDNSTLQSEVKPILEKLTQD  569 (588)
T ss_dssp             HHHGGGSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCcHhHHHHHHHHHHHHcCC
Confidence            99984  3334444444555544434
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure