Citrus Sinensis ID: 005908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670
Protein Sequence
MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCKKEFL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEEEEcccccHHHHccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccccccHHHHHHHHHHcHccccccccccccEcccccccccccEEEEEcccccccHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHcccccccccccccEEccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccEEEcccccEEHHHHHHHHHHHHHccHHHHHHHHHHHccccccccEEEEcccccHHccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccccEEEEEEEEcccccEEEEEEEEcccccHHHHHccHHHHccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHcHHHcc
Coil and Loop (DISEMBL)
mpggsgsssrtgVRVVVVGDRGTGKSSLIAAAatesvpekvppvhaptrlppdfypdrvpvtiidtssslenkGKLNEELKRADAVVLTYACNqqstlsrlssywlpelrrleIKVPIIVAGCkldlrgdhnatsleevmgPIMQQFREIETCVEcsattmiqvpDVFYYAQKavlhptaplfdhdeqtlKPRCVRALKRIFIICDhdmdgalndAELNEFQVKcfnaplqpaeiVGVKRVVQEkqhdgvndlgltLSGFLFLHALFIEKGRLETTWAVLRKfgygddlelrddflpvptklspdqsVELASEAVEFLRGIFglydidndgavrpaELEDlfltapespwdeapykdaaettaLGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFrcllfgpqnagkSALLNSflerpfsenyapttgeqYAVNvvdqpggnkktlILQEIPEEGVKKILSNkealascdvtifvydssdeysWKRTKELLVEVARLgedsgygvpclliaskddlkpytmaVQDSARVTqelgieppipvsmkskdlnNVFSRIIWAaehphlnipetetgrnrkrYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSwgcccgrrtgclsslcckkefl
Flexible Loop (DISEMBL)
mpggsgsssrtgvRVVVVGDRGTGKSSLIAaaatesvpekvppvhaptrlppdfypdRVPVTIIdtssslenkgKLNEELKRADAVVLTYAcnqqstlsrlssywlpELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTaplfdhdeqTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTrkrsvdrkkqqternvfrcllfgpqNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILsnkealascDVTIFvydssdeyswKRTKELLVEVArlgedsgygVPCLLIASKDDLKPYTMAVQDSARVTQElgieppipvsmkskDLNNVFSRIIwaaehphlnipetetgrnrKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCKKEFL
Low Complexity Region (SEG)
MPggsgsssrtgvrvvvvgdrgtgKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCKKEFL
Disordered region (IsUnstruct)
*************RVVVVG**********************************FYPDRVPVTII***************LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL****SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVT*************RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI***I*V****KDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCK****
Disordered Region (DISOPRED)
**************VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTA*************CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDP************************RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD***************QELGIEPPIPVSMKSKDLNNVFSRIIWAAE********************LVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCKKEFL
Disordered Region (DISEMBL)
***********GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALR*************TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCKKEFL
Disordered Region (DISPRO)
**********TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSV*R*KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCKK*F*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGRRTGCLSSLCCKKEFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	670	2.2.26 [Sep-21-2011]
P0CO78	686	Mitochondrial Rho GTPase	yes	no	0.865	0.845	0.397	1e-121
P0CO79	686	Mitochondrial Rho GTPase	N/A	no	0.865	0.845	0.397	1e-121
Q4PB75	752	Mitochondrial Rho GTPase	N/A	no	0.791	0.704	0.392	1e-117
Q2HJF8	631	Mitochondrial Rho GTPase	yes	no	0.856	0.909	0.395	1e-115
Q5ZM83	618	Mitochondrial Rho GTPase	yes	no	0.850	0.922	0.405	1e-115
Q8IXI2	618	Mitochondrial Rho GTPase	no	no	0.843	0.914	0.395	1e-114
Q5ZM73	619	Mitochondrial Rho GTPase	no	no	0.849	0.919	0.393	1e-113
Q8BG51	631	Mitochondrial Rho GTPase	no	no	0.849	0.901	0.389	1e-112
Q6NVC5	619	Mitochondrial Rho GTPase	yes	no	0.838	0.907	0.387	1e-111
Q8IMX7	652	Mitochondrial Rho GTPase	yes	no	0.853	0.877	0.363	1e-109

>sp|P0CO78|GEM1_CRYNJ Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GEM1 PE=3 SV=1

 Score =  436 bits (1122), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/634 (39%), Positives = 355/634 (55%), Gaps = 54/634 (8%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+VGD G GKSS+I +   E+    VP V     +PP+  P+    +I+DTSS+
Sbjct: 4   RDLVRIVLVGDDGVGKSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSN 63

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
             ++  L   + RA  + L Y+    S+  R++ YWLP  RR  I VP+I+ G K+DLRG
Sbjct: 64  PRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRG 123

Query: 130 DH-NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
                  LE+   PIM++F+E+ET VECSA   + V +VFY+AQKAVLHPTAPL+D  E 
Sbjct: 124 GRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREH 183

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHD 248
           TLKP+C+ ALKRIF I D D DG LN  ELN+FQ KCF+ PLQ  E+ G+  +V+     
Sbjct: 184 TLKPKCLEALKRIFTISDVDKDGLLNAHELNQFQQKCFSTPLQSQELDGILEIVRSYDPY 243

Query: 249 GVNDL---------------------------------GLTLSGFLFLHALFIEKGRLET 275
            V  L                                 G+T  GFL+LH +FI++GR+ET
Sbjct: 244 AVQPLPSSSPNTPLSRDSSYGQLHYFNNNVVPPSPPQEGITELGFLYLHTMFIQQGRMET 303

Query: 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRP 335
           TW VLRKFGYG+ L+LR+DFL     +  D SVEL+    +FL  IF  YD D DGA+  
Sbjct: 304 TWTVLRKFGYGESLDLREDFLAPKFDVPSDCSVELSPLGNQFLTDIFEAYDKDQDGALSQ 363

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVG 395
            EL+DLF T+P +PW    + D   T  +G +TL+G++++W++ TLL+ R +L  L Y+G
Sbjct: 364 NELDDLFSTSPGNPWLSQGFPDTTITDDMGRVTLQGWLAQWSMTTLLNHRTTLNYLAYLG 423

Query: 396 YGGDPA------AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS 449
           Y   PA       AL VTR R  DR++++  RNVF C + G   +GK++LL SF+ RPF 
Sbjct: 424 YSSSPATDLPTPTALHVTRPRKQDRRQRKVTRNVFLCYVLGATGSGKTSLLRSFVNRPFK 483

Query: 450 ------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
                   Y PTT     VN V+   G +K L+LQE   +   +IL N + L   D+ I+
Sbjct: 484 GGEDGLGGYEPTTKVLSVVNSVEME-GVEKYLVLQEFGSKYESEILRNSKRLDMADIIIY 542

Query: 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV-TQEL 562
           V+DSSD  S+     L  +       S   +P + +A+K DL       +    V  + L
Sbjct: 543 VHDSSDTNSFSYISNLRQQY------SLDHIPSIFVATKSDLDLAQQRHEVQPDVYCRRL 596

Query: 563 GIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIP 596
           G++ P+ VS +   L+N++  I   A  P  ++P
Sbjct: 597 GLQAPMAVSSRLGPLHNLWVAITRVALDPTSSLP 630

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|P0CO79|GEM1_CRYNB Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GEM1 PE=3 SV=1

 Score =  436 bits (1122), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/634 (39%), Positives = 355/634 (55%), Gaps = 54/634 (8%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+VGD G GKSS+I +   E+    VP V     +PP+  P+    +I+DTSS+
Sbjct: 4   RDLVRIVLVGDDGVGKSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSN 63

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
             ++  L   + RA  + L Y+    S+  R++ YWLP  RR  I VP+I+ G K+DLRG
Sbjct: 64  PRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRG 123

Query: 130 DH-NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
                  LE+   PIM++F+E+ET VECSA   + V +VFY+AQKAVLHPTAPL+D  E 
Sbjct: 124 GRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREH 183

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHD 248
           TLKP+C+ ALKRIF I D D DG LN  ELN+FQ KCF+ PLQ  E+ G+  +V+     
Sbjct: 184 TLKPKCLEALKRIFTISDVDKDGLLNAHELNQFQQKCFSTPLQSQELDGILEIVRSYDPY 243

Query: 249 GVNDL---------------------------------GLTLSGFLFLHALFIEKGRLET 275
            V  L                                 G+T  GFL+LH +FI++GR+ET
Sbjct: 244 AVQPLPSSSPNTPLSRDSSYGQLHYFNNNVVPPSPPQEGITELGFLYLHTMFIQQGRMET 303

Query: 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRP 335
           TW VLRKFGYG+ L+LR+DFL     +  D SVEL+    +FL  IF  YD D DGA+  
Sbjct: 304 TWTVLRKFGYGESLDLREDFLAPKFDVPSDCSVELSPLGNQFLTDIFEAYDKDQDGALSQ 363

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVG 395
            EL+DLF T+P +PW    + D   T  +G +TL+G++++W++ TLL+ R +L  L Y+G
Sbjct: 364 NELDDLFSTSPGNPWLSQGFPDTTITDDMGRVTLQGWLAQWSMTTLLNHRTTLNYLAYLG 423

Query: 396 YGGDPA------AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS 449
           Y   PA       AL VTR R  DR++++  RNVF C + G   +GK++LL SF+ RPF 
Sbjct: 424 YSSSPATDLPTPTALHVTRPRKQDRRQRKVTRNVFLCYVLGATGSGKTSLLRSFVNRPFK 483

Query: 450 ------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
                   Y PTT     VN V+   G +K L+LQE   +   +IL N + L   D+ I+
Sbjct: 484 GGEDGLGGYEPTTKVLSVVNSVEME-GVEKYLVLQEFGSKYESEILRNSKRLDMADIIIY 542

Query: 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV-TQEL 562
           V+DSSD  S+     L  +       S   +P + +A+K DL       +    V  + L
Sbjct: 543 VHDSSDTNSFSYISNLRQQY------SLDHIPSIFVATKSDLDLAQQRHEVQPDVYCRRL 596

Query: 563 GIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIP 596
           G++ P+ VS +   L+N++  I   A  P  ++P
Sbjct: 597 GLQAPMAVSSRLGPLHNLWVAITRVALDPTSSLP 630

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q4PB75|GEM1_USTMA Mitochondrial Rho GTPase 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=GEM1 PE=3 SV=1

 Score =  424 bits (1090), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/604 (39%), Positives = 343/604 (56%), Gaps = 74/604 (12%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+ GD   GKS+LI +   E+   KV  V  P  LPP+  P+ V   I+DTSSS
Sbjct: 2   RKDVRIVLAGDPDVGKSTLITSLVKEAYVAKVQKVVPPITLPPEVAPEAVVTKIVDTSSS 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR- 128
            E++  L  EL+RA+ + + Y+ +  S+  R+ +YWLP +R L + VP+I+ G K+DLR 
Sbjct: 62  PEHRANLEAELRRANVICIVYSISAPSSFDRIPTYWLPYIRSLGVNVPVILVGNKIDLRS 121

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
           GD    +LE+ + P+M +F+E+ETCVECSA   + V +VFY+AQKAVL+PTAPL+D  E 
Sbjct: 122 GDVTNAALEDELAPVMAEFKEVETCVECSARIPLNVSEVFYFAQKAVLYPTAPLYDSREH 181

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQE---- 244
            LKP CV ALKRIF +CD D DG L+D ELN+FQ KCF+ PLQ  E+ G+K +V +    
Sbjct: 182 VLKPACVDALKRIFRLCDSDKDGLLSDGELNDFQRKCFDTPLQAQELEGIKDLVVQAPIA 241

Query: 245 -----------------------KQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLR 281
                                    H  + +  LT++GFL+LH LFI++GRLETTW VLR
Sbjct: 242 GLRYNHENSSVAASGSSANGDIPSHHPHLREGSLTMAGFLYLHTLFIQRGRLETTWTVLR 301

Query: 282 KFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
            FGYG DL L+D F+     + P+ SVEL+    +FL  IF ++D D DGA+   EL+ L
Sbjct: 302 TFGYGVDLSLQDSFVKPAFAVPPECSVELSPNGYQFLTDIFEVHDKDRDGALSEEELDSL 361

Query: 342 FLTAPES--PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY--- 396
           F+TAP++  PW    +  +  T   G +TL+G++++W++ TLLD R +LA L Y+GY   
Sbjct: 362 FITAPDNRHPWQGTGFPTSTITDEHGAVTLQGWLAQWSMTTLLDHRTTLAYLAYLGYPSF 421

Query: 397 -----------------------GGDPA-----------AALRVTRKRSVDRKKQ-QTER 421
                                  G  P+            AL++TR R  D+KK+   +R
Sbjct: 422 PLSGSSGSASTPAPIPLTPTGPPGSRPSRNRTPCPPSTITALKLTRPRKTDKKKKGAIQR 481

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           +VF   + G   +GK+A+L + + + F+  Y PT      V+ V+Q  G ++ L+LQE  
Sbjct: 482 SVFLGFVLGAAGSGKTAILRNMVGKRFANAYEPTQKMMSVVSTVEQ-AGAERYLVLQEFG 540

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
                ++L N   L++ DV +FVYDSSD  S+     L  +   L       +P L +A+
Sbjct: 541 SRYEAEVLRNTAKLSAADVIVFVYDSSDTNSFSYISNLRQQYPLL-----QSMPSLFVAT 595

Query: 542 KDDL 545
           K DL
Sbjct: 596 KADL 599

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q2HJF8|MIRO1_BOVIN Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 PE=2 SV=1

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 357/614 (58%), Gaps = 40/614 (6%)

Query: 1   MPGGSGSSSRTG-----VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY 55
           MP G G   R       VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  
Sbjct: 1   MPAGRGRPLRAADMKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVT 60

Query: 56  PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRL 112
           P+RVP  I+D S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    
Sbjct: 61  PERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDK 120

Query: 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172
           + ++P+I+ G K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQ
Sbjct: 121 DSRLPLILVGNKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQ 176

Query: 173 KAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQP 232
           KAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P
Sbjct: 177 KAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAP 236

Query: 233 AEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELR 292
             +  VK VV++   DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L 
Sbjct: 237 QALEDVKNVVRKHISDGVADGGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLT 296

Query: 293 DDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE 352
            ++L    K+ PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW  
Sbjct: 297 PEYLFPLLKIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWG- 355

Query: 353 APYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVT 407
               +   T   G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VT
Sbjct: 356 PDVNNTVCTNEKGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVT 415

Query: 408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVV 465
           R + +D +K+QT+RNVFRC + G +N GKS +L + L R  +         +  YA+N V
Sbjct: 416 RDKKIDLQKKQTQRNVFRCNVIGMKNCGKSGVLQALLGRNLTRQKKIRDDHKSYYAINTV 475

Query: 466 DQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 525
               G +K L+L +I E    + L+  E L  CDV   VYD S+  S++    +     +
Sbjct: 476 -YVYGQEKYLLLHDISES---EFLTEAEIL--CDVVCLVYDVSNPKSFEYCARIF---KQ 526

Query: 526 LGEDSGYGVPCLLIASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NN 579
              DS   +PCL++A+K DL    + Y+++  D  R   +  + PP   +  + D    +
Sbjct: 527 HFMDS--RIPCLIVAAKSDLHEVKQEYSISPTDFCR---KHKMPPPQAFTCNTADAPSKD 581

Query: 580 VFSRIIWAAEHPHL 593
           +F ++   A +PH+
Sbjct: 582 IFVKLTTMAMYPHV 595

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5ZM83|MIRO2_CHICK Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1

 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/597 (40%), Positives = 341/597 (57%), Gaps = 27/597 (4%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           VR++++G+   GK+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + 
Sbjct: 5   VRILLLGEAQVGKTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQT 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRG 129
           + +L EE+ +A+ V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+ 
Sbjct: 65  EDELQEEIAKANVVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ- 123

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
                S  EV+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ 
Sbjct: 124 ---MGSSMEVILPIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQ 180

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDG 249
           L+P C RAL RIF + D D +  L+D ELN FQ  CF  PL P  +  VK VV +   DG
Sbjct: 181 LRPACSRALTRIFNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDG 240

Query: 250 VNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVE 309
           V D GLTL+GFLFL+ LFI++GR ETTW +LR+FGY D+LEL DD+L    +L P  S E
Sbjct: 241 VQDNGLTLNGFLFLNTLFIQRGRHETTWTILRRFGYDDELELTDDYLYPQFRLPPGCSTE 300

Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
           L     +FL+ +F  +D D DGA+ PAEL++ F   P  PW    Y     TT  G L+L
Sbjct: 301 LNHLGYQFLQRLFEKHDKDQDGALSPAELQNFFSVFPCMPWGPELYNTVC-TTDKGLLSL 359

Query: 370 KGFVSKWALMTLLDPRHSLANLIYVGY-----GGDPAAALRVTRKRSVDRKKQQTERNVF 424
            GF+ +W L+  LD RH L  L Y+GY           AL VTR++ +D +K QT+RNVF
Sbjct: 360 HGFLCQWTLIAYLDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVF 419

Query: 425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            C + G + AGKSA L +FL R   ++  +P     Y +N V Q  G +K LIL E+  E
Sbjct: 420 LCKVLGARGAGKSAFLQAFLGRSLAAQRESPGEPSPYTINTV-QVNGQEKYLILHEVSAE 478

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                   K + A+CDV   +YD SD  S+     +  +     +     +PC+ +ASK 
Sbjct: 479 ----TQFTKPSDAACDVACLIYDLSDPKSFSYCASIYKQHYMDSQ-----IPCVFVASKT 529

Query: 544 DLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHLNIPE 597
           DL   +     S A    +  + PP   S  S+      +++++  AA  PHLN  E
Sbjct: 530 DLPEASQQPGLSPAEFCYKHCLPPPFLFSCHSQGPPGTAIYTKLATAATFPHLNAVE 586

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8IXI2|MIRO1_HUMAN Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/600 (39%), Positives = 352/600 (58%), Gaps = 35/600 (5%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S +
Sbjct: 2   KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G K D
Sbjct: 62  EQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +
Sbjct: 122 LV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHI 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD 
Sbjct: 238 SDGVADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T   G 
Sbjct: 298 TTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWG-PDVNNTVCTNERGW 356

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+R
Sbjct: 357 ITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQR 416

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQE 479
           NVFRC + G +N GKS +L + L R            +  YA+N V    G +K L+L +
Sbjct: 417 NVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHD 475

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           I E    + L+  E +  CDV   VYD S+  S++    +     +   DS   +PCL++
Sbjct: 476 ISE---SEFLTEAEII--CDVVCLVYDVSNPKSFEYCARIF---KQHFMDS--RIPCLIV 525

Query: 540 ASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
           A+K DL    + Y+++  D  R   +  + PP   +  + D    ++F ++   A +PH+
Sbjct: 526 AAKSDLHEVKQEYSISPTDFCR---KHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 582

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5ZM73|MIRO1_CHICK Mitochondrial Rho GTPase 1 OS=Gallus gallus GN=RHOT1 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/597 (39%), Positives = 346/597 (57%), Gaps = 28/597 (4%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S +
Sbjct: 2   KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            +N  +L  E+ +A+ + + YA N ++++ +++S W+P   E    + ++P+I+ G K D
Sbjct: 62  EQNDEQLYHEISQANVICIVYAVNNKNSIDKVTSRWIPLINERTDKDSRLPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L      +S+E ++ PIM Q+ EIETCVECSA  +    ++FYYAQKAVLHPT PL+  +
Sbjct: 122 LV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNRSELFYYAQKAVLHPTGPLYCPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPACIKALTRIFRISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKNV 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD 
Sbjct: 238 SDGVADNGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTPEYLFPLLKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+ IF  +D+D D A+ P EL+DLF   P  PW              G 
Sbjct: 298 TTELNHHAYLFLQSIFDKHDLDRDCALSPDELKDLFKVFPYMPWGPDVNNTVCTNGKGGW 357

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+R
Sbjct: 358 ITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILAEQESQASAITVTRDKKIDLQKKQTQR 417

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQE 479
           NVFRC + G +  GKS +L + L R            +  YA+N V    G +K L+L +
Sbjct: 418 NVFRCNVVGMKGCGKSGVLQALLGRNLMRQRQIRAEHKSYYAINTV-YVYGQEKYLLLHD 476

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           + +    + L++ E +  CDV   VYD S+  S++    +     +   DS   +PCL++
Sbjct: 477 VSD---SEFLTDAETI--CDVVCLVYDVSNPKSFEYCVRIF---KQHFMDS--RIPCLVV 526

Query: 540 ASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
           A+K DL         S A   ++  + PP   +  + D+   ++F ++   A +PH+
Sbjct: 527 AAKSDLHEVRQEYSISPAEFCKKHKMPPPQAFTCNTVDMPSKDIFVKLTTMAMYPHV 583

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8BG51|MIRO1_MOUSE Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot1 PE=2 SV=1

 Score =  407 bits (1046), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/604 (38%), Positives = 352/604 (58%), Gaps = 35/604 (5%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIID 65
            S  +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D
Sbjct: 11  ASDMKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVD 70

Query: 66  TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAG 122
            S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G
Sbjct: 71  YSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVG 130

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
            K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL
Sbjct: 131 NKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPL 186

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           +  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV
Sbjct: 187 YCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVV 246

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           ++   DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+
Sbjct: 247 RKHLSDGVADSGLTLRGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKI 306

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
            PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T 
Sbjct: 307 PPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFQVFPYIPWG-PDVNNTVCTN 365

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQ 417
             G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+
Sbjct: 366 ERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKK 425

Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTL 475
           QT+RNVFRC + G +  GK+ +L S L R            +  YA+N V    G +K L
Sbjct: 426 QTQRNVFRCNVIGVKGCGKTGVLQSLLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYL 484

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP 535
           +L +I E    + L+  E +  CDV   VYD ++  S++    +     +   DS   +P
Sbjct: 485 LLHDISE---SEFLTEAETI--CDVVCLVYDVTNPKSFEYCARIF---KQHFMDS--RIP 534

Query: 536 CLLIASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAE 589
           CL++A+K DL    + ++++  D  R   +  + PP   +  + D    ++F ++   A 
Sbjct: 535 CLIVAAKSDLHEVKQEHSISPTDFCR---KHKMPPPQAFTCNTADAPSKDIFVKLTTMAM 591

Query: 590 HPHL 593
           +PH+
Sbjct: 592 YPHV 595

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6NVC5|MIRO1_DANRE Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rhot1a PE=2 SV=1

 Score =  404 bits (1038), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/604 (38%), Positives = 351/604 (58%), Gaps = 42/604 (6%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+++VG+   GK+SLI +  +E  P++VPP      +P D  P+RVP  I+D S +
Sbjct: 2   RKDVRILLVGEPKVGKTSLIMSLVSEEFPDEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            ++  +L +E+ +A+ + + Y+ N + ++ +++S+W+P   E    + +VP+I+ G K D
Sbjct: 62  EQSDEQLYQEITKANVICIVYSVNNKKSIEKVTSHWIPLINERTDKDSRVPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L  +H  +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +
Sbjct: 122 L-VEH--SSMETIL-PIMNQYSEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYSPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LND ELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPSCIKALTRIFKISDLDNDGILNDNELNFFQRTCFNIPLAPQALEDVKNVVRKNM 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD 
Sbjct: 238 TDGVKDNGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTQEYLFPLFKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+ +F  +D D D A+ P EL+DLF   P  PW      +   T   G 
Sbjct: 298 TTELNHNAYLFLQSVFDKHDKDRDCALSPDELKDLFKVFPYMPWG-PDVNNTVCTNEQGW 356

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +G++S+W L T LD +  L  L Y+GY         AAA+ VTR + +D +K+QT+R
Sbjct: 357 ITYQGYLSQWTLTTYLDVQRCLEYLGYLGYSIIQEQESQAAAITVTRNKRIDLQKKQTQR 416

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           +VFRC + G +  GKS  L +FL R     +         YA++     G  K  L+ + 
Sbjct: 417 SVFRCNVLGARGCGKSGFLQAFLGRNLVRQKRIREDHKSYYAISTTYVYGQEKYLLLHEV 476

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSD----EYSWKRTKELLVEVARLGEDSGYGVP 535
           +P+    + LS  EA  +CDV   VYD S+    EY  K  K+  ++            P
Sbjct: 477 LPD---VEFLS--EADLACDVVCLVYDISNPRSFEYCAKVYKKHFMDSK---------TP 522

Query: 536 CLLIASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAE 589
           C++IA+K DL    + Y+++  D  R   +  + PP   +  + +    ++++++   A 
Sbjct: 523 CVIIAAKSDLHEARQYYSLSPLDFCR---KHKLHPPQLFTCNTTEAPSKDLYTKLTTMAM 579

Query: 590 HPHL 593
           +PH+
Sbjct: 580 YPHM 583

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8IMX7|MIRO_DROME Mitochondrial Rho GTPase OS=Drosophila melanogaster GN=Miro PE=1 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 353/628 (56%), Gaps = 56/628 (8%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G   +S R  VR+++VGD G GK+SLI +  +E  PE+VPP      +P +  P++VP +
Sbjct: 2   GQYTASQRKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIPANVTPEQVPTS 61

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR------------ 110
           I+D S+  +++  L  E+ +A  V + YA +   TL R++S+WLP +R            
Sbjct: 62  IVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGEGD 121

Query: 111 ----------RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160
                     R  I+ PI++ G K+DL      ++++ V+  IM+ + EIE+CVECSA +
Sbjct: 122 AEAEAEGDTQREPIRKPIVLVGNKIDLI---EYSTMDSVLA-IMEDYPEIESCVECSAKS 177

Query: 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNE 220
           +  + ++FYYAQKAVLHPT+PL+  +EQ L   C ++L RIF ICD D D  LND ELN 
Sbjct: 178 LHNISEMFYYAQKAVLHPTSPLYMMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNL 237

Query: 221 FQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVL 280
           FQ +CFN PLQP  +  VK V+Q+   DG+ +  +TL GFLFLH LFI++GR ETTWAVL
Sbjct: 238 FQRRCFNTPLQPQILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVL 297

Query: 281 RKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340
           R+FGY D LE+  ++L  P K+ P  S EL+    +FL  +F  YD D DGA+ P E + 
Sbjct: 298 RRFGYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGALSPEEHKM 357

Query: 341 LFLTAPESPWDEAP--YKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY-- 396
           LF T P +PW  +    K        G +TL G++ +W LMTL+D   ++  L Y+G+  
Sbjct: 358 LFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTLIDVVKTMEYLAYLGFNV 417

Query: 397 --GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP 454
                  AA+ VTR+R +D  K+Q+ R+V++C + GP+ +GK+ +   FL     E+   
Sbjct: 418 HENDSQLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPKGSGKTGMCRGFL----VEDMHK 473

Query: 455 TTGEQYAVNVVD-----QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD 509
             G+++  NVV+     Q  G +K LIL++I        L  +E   +CDV   VYDSS+
Sbjct: 474 LIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQPQE--VNCDVACLVYDSSN 531

Query: 510 EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTMAVQDSARVTQELGIE 565
             S++    + ++       +   +P +++ +K D+    + Y M     +    +  + 
Sbjct: 532 PRSFEYVARIYIKYY-----AESKIPVMIVGTKCDMDERRQDYLM---QPSEFCDKYKLL 583

Query: 566 PPIPVSMKSKDLNNVFSRIIWAAEHPHL 593
           PP   S+K+     +++++   A  PHL
Sbjct: 584 PPHLFSLKTNK-KELYTKLATMAAFPHL 610

Mitochondrial GTPase involved in mitochondrial trafficking. Milt and Miro form an essential protein complex that links Khc to mitochondria for light chain-independent, anterograde transport of mitochondria. Required for axonal transport to synapses within nerve terminals. Required presynaptically but not postsynaptically at neuromuscular junctions (NMJs).

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	670
224082628	645	predicted protein [Populus trichocarpa]	0.923	0.959	0.747	0.0
296088320	684	unnamed protein product [Vitis vinifera]	0.920	0.902	0.714	0.0
225450975	647	PREDICTED: mitochondrial Rho GTPase 1 [V	0.920	0.953	0.714	0.0
255559464	644	rac-GTP binding protein, putative [Ricin	0.938	0.976	0.728	0.0
225436934	639	PREDICTED: mitochondrial Rho GTPase 1 [V	0.889	0.932	0.726	0.0
150036254	647	ATP/GTP/Ca++ binding protein [Cucumis me	0.914	0.947	0.701	0.0
449462328	639	PREDICTED: LOW QUALITY PROTEIN: mitochon	0.907	0.951	0.706	0.0
449442827	647	PREDICTED: mitochondrial Rho GTPase 1-li	0.914	0.947	0.699	0.0
449482860	648	PREDICTED: mitochondrial Rho GTPase 1-li	0.914	0.945	0.698	0.0
224125274	651	predicted protein [Populus trichocarpa]	0.908	0.935	0.691	0.0

>gi|224082628|ref|XP_002306771.1| predicted protein [Populus trichocarpa] gi|222856220|gb|EEE93767.1| predicted protein [Populus trichocarpa]

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/621 (74%), Positives = 543/621 (87%), Gaps = 2/621 (0%)

Query: 1   MPGGSGSSS--RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR 58
           MPGG+ +++  +TGVR+VVVGDRGTGKSSLIAAAATES PE + PV  PTRLP DF+PDR
Sbjct: 1   MPGGNSAAAGGKTGVRIVVVGDRGTGKSSLIAAAATESFPENLSPVLPPTRLPADFFPDR 60

Query: 59  VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI 118
           VP+TIIDTS+SLE++GKLNEELKRAD ++LTYAC+   TL+RLSS+WL E RRLE+KVP+
Sbjct: 61  VPITIIDTSASLESRGKLNEELKRADVIILTYACDFPLTLTRLSSFWLQEFRRLEVKVPV 120

Query: 119 IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
           IV GCK+DLR ++   SLE VMGPIMQQ+REIETC+ECSA T++QVPDVFYYAQKAVLHP
Sbjct: 121 IVVGCKVDLRDENQPISLEPVMGPIMQQYREIETCIECSAVTLMQVPDVFYYAQKAVLHP 180

Query: 179 TAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV 238
           TAPLFD D Q L+PRC+RAL+RIFI+CD DMDGALNDAELN+FQVKCF+APLQPAEIVGV
Sbjct: 181 TAPLFDQDTQALQPRCIRALRRIFILCDSDMDGALNDAELNDFQVKCFDAPLQPAEIVGV 240

Query: 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPV 298
           +RVVQEK+ +GVNDLGLTL GFLFLH+LFI+KGRLETTWAVLRKFGYG+DL+LRDDFLP 
Sbjct: 241 RRVVQEKKKEGVNDLGLTLEGFLFLHSLFIDKGRLETTWAVLRKFGYGNDLKLRDDFLPA 300

Query: 299 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDA 358
           P+K +PDQSVEL  EAVEF+R +F L+D DN GA+RP EL++LF TAPE+PW EAPYKDA
Sbjct: 301 PSKDAPDQSVELTIEAVEFVRRVFRLFDTDNYGALRPTELDELFSTAPENPWGEAPYKDA 360

Query: 359 AETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQ 418
           AE T  GNLTLKGF+S+WALMT+LDPR SLANL+Y+GYGG+PA+AL VTR+RSVDRKKQQ
Sbjct: 361 AERTTQGNLTLKGFLSEWALMTMLDPRGSLANLLYIGYGGNPASALHVTRRRSVDRKKQQ 420

Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           TERNVF CL+FGP+NAGKS LLNSFL RPFSE++    GE+YAVNVVDQ GGNKKTLIL+
Sbjct: 421 TERNVFHCLVFGPKNAGKSTLLNSFLGRPFSESHELIAGERYAVNVVDQHGGNKKTLILR 480

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
           EIPE+GVKK LSNKE+L+S DV +FV DSSDEYSWKR+ ELLVEVAR GE+SGYGVP L+
Sbjct: 481 EIPEDGVKKFLSNKESLSSSDVAVFVCDSSDEYSWKRSNELLVEVARHGEESGYGVPSLI 540

Query: 539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPET 598
           IA+KDDL P+ M+VQ S RV QELGI   IP+S K  D+NNVF RI+ AAEHPHLNIPET
Sbjct: 541 IAAKDDLDPHPMSVQKSVRVCQELGIGASIPISSKLGDMNNVFCRILSAAEHPHLNIPET 600

Query: 599 ETGRNRKRYRHLVNSSLVFVS 619
             GR RK++  LVN SL+F+S
Sbjct: 601 VAGRKRKQFHQLVNHSLLFMS 621

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088320|emb|CBI36765.3| unnamed protein product [Vitis vinifera]

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/617 (71%), Positives = 528/617 (85%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G + S +RTGVR+VV GDRGTGKSSLI  AA E+ P  V PV  PTRLP DFYPDRVP+T
Sbjct: 44  GATNSGNRTGVRIVVAGDRGTGKSSLIVTAAAENFPANVAPVLPPTRLPDDFYPDRVPIT 103

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAG 122
           IIDTSSSLEN+  L +EL+RADAVVLTYAC+Q +TL RLS++WLPELRRLE+KVP+IV G
Sbjct: 104 IIDTSSSLENRSALADELRRADAVVLTYACDQPATLDRLSTFWLPELRRLEVKVPVIVVG 163

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
           CKLDLR ++   SLE+VM PIMQQFREIETC+ECSA+T IQ+P+VFYYAQKAVLHPT PL
Sbjct: 164 CKLDLRDENQQMSLEQVMSPIMQQFREIETCIECSASTHIQIPEVFYYAQKAVLHPTGPL 223

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           FD + QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EI GVKRVV
Sbjct: 224 FDQETQTLKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNAPLQPSEISGVKRVV 283

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           QEK H+GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++LR+D +P+  K 
Sbjct: 284 QEKLHEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLREDLIPLSFKR 343

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
           +PDQ++EL +EA+EFL+GIF L+DID DGA+ P EL DLF TAPESPW EAPYKDAAE T
Sbjct: 344 APDQNMELTTEALEFLKGIFSLFDIDGDGALHPDELVDLFSTAPESPWIEAPYKDAAEKT 403

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERN 422
           ALG L+L GF+S+WAL+TLLDP  SL NLIY+GY GDP +A+RVTRKR +DRKKQQ++RN
Sbjct: 404 ALGGLSLDGFLSEWALLTLLDPVSSLENLIYIGYAGDPPSAMRVTRKRRLDRKKQQSDRN 463

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           VF+C +FGP+ AGKS LLN+FL RPFS++Y PT  E+YAVNVVDQPGG+KKTL+L+EI E
Sbjct: 464 VFQCFVFGPKEAGKSGLLNAFLGRPFSDSYNPTIDERYAVNVVDQPGGSKKTLVLREIAE 523

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           +GV+K+LS +++LA+CD+ +FVYDSSDE SWKR  ELLVEVA  GE++ Y VPCL++A+K
Sbjct: 524 DGVRKLLSKRDSLAACDIALFVYDSSDESSWKRATELLVEVASHGENTSYEVPCLIVAAK 583

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGR 602
           DDL PY MA+ DS R+TQ++GIEPPIP+S K  D N +F RII AAEHPHL+IPETE GR
Sbjct: 584 DDLDPYPMAIHDSTRLTQDMGIEPPIPISAKLGDFNTIFRRIIAAAEHPHLSIPETEAGR 643

Query: 603 NRKRYRHLVNSSLVFVS 619
           +RK+Y  L+N SL+ VS
Sbjct: 644 SRKQYSRLINRSLMVVS 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450975|ref|XP_002284757.1| PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera]

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/617 (71%), Positives = 528/617 (85%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G + S +RTGVR+VV GDRGTGKSSLI  AA E+ P  V PV  PTRLP DFYPDRVP+T
Sbjct: 7   GATNSGNRTGVRIVVAGDRGTGKSSLIVTAAAENFPANVAPVLPPTRLPDDFYPDRVPIT 66

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAG 122
           IIDTSSSLEN+  L +EL+RADAVVLTYAC+Q +TL RLS++WLPELRRLE+KVP+IV G
Sbjct: 67  IIDTSSSLENRSALADELRRADAVVLTYACDQPATLDRLSTFWLPELRRLEVKVPVIVVG 126

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
           CKLDLR ++   SLE+VM PIMQQFREIETC+ECSA+T IQ+P+VFYYAQKAVLHPT PL
Sbjct: 127 CKLDLRDENQQMSLEQVMSPIMQQFREIETCIECSASTHIQIPEVFYYAQKAVLHPTGPL 186

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           FD + QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EI GVKRVV
Sbjct: 187 FDQETQTLKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNAPLQPSEISGVKRVV 246

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           QEK H+GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++LR+D +P+  K 
Sbjct: 247 QEKLHEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLREDLIPLSFKR 306

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
           +PDQ++EL +EA+EFL+GIF L+DID DGA+ P EL DLF TAPESPW EAPYKDAAE T
Sbjct: 307 APDQNMELTTEALEFLKGIFSLFDIDGDGALHPDELVDLFSTAPESPWIEAPYKDAAEKT 366

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERN 422
           ALG L+L GF+S+WAL+TLLDP  SL NLIY+GY GDP +A+RVTRKR +DRKKQQ++RN
Sbjct: 367 ALGGLSLDGFLSEWALLTLLDPVSSLENLIYIGYAGDPPSAMRVTRKRRLDRKKQQSDRN 426

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           VF+C +FGP+ AGKS LLN+FL RPFS++Y PT  E+YAVNVVDQPGG+KKTL+L+EI E
Sbjct: 427 VFQCFVFGPKEAGKSGLLNAFLGRPFSDSYNPTIDERYAVNVVDQPGGSKKTLVLREIAE 486

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           +GV+K+LS +++LA+CD+ +FVYDSSDE SWKR  ELLVEVA  GE++ Y VPCL++A+K
Sbjct: 487 DGVRKLLSKRDSLAACDIALFVYDSSDESSWKRATELLVEVASHGENTSYEVPCLIVAAK 546

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGR 602
           DDL PY MA+ DS R+TQ++GIEPPIP+S K  D N +F RII AAEHPHL+IPETE GR
Sbjct: 547 DDLDPYPMAIHDSTRLTQDMGIEPPIPISAKLGDFNTIFRRIIAAAEHPHLSIPETEAGR 606

Query: 603 NRKRYRHLVNSSLVFVS 619
           +RK+Y  L+N SL+ VS
Sbjct: 607 SRKQYSRLINRSLMVVS 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559464|ref|XP_002520752.1| rac-GTP binding protein, putative [Ricinus communis] gi|223540137|gb|EEF41714.1| rac-GTP binding protein, putative [Ricinus communis]

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/633 (72%), Positives = 537/633 (84%), Gaps = 4/633 (0%)

Query: 1   MPGGSG-SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRV 59
           MPGG+  +  + GVRVVV GDR TGKSSLIAAAATE+ PE VP V  PTRLP DF+PDR+
Sbjct: 1   MPGGNSITGGKVGVRVVVAGDRFTGKSSLIAAAATETYPENVPRVLPPTRLPADFFPDRI 60

Query: 60  PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
           P+TIIDTS++LE++GKL EELKRAD VVLTY+C+Q  TLSRLSS+WL ELRRLE+KVP+I
Sbjct: 61  PITIIDTSAALESRGKLIEELKRADVVVLTYSCDQPLTLSRLSSFWLEELRRLEVKVPVI 120

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT 179
           V GCKLDLR +    SLE+VMGPIMQQ REIETC+ECSA T++QVPDVF+YAQKAVLHPT
Sbjct: 121 VVGCKLDLRDEAYPVSLEQVMGPIMQQHREIETCIECSAVTLMQVPDVFFYAQKAVLHPT 180

Query: 180 APLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVK 239
           APLFD +  TLKPRC RAL+RIF++CDHDMDGALND ELN FQVKCFNAPLQPAEIVGV+
Sbjct: 181 APLFDQEHHTLKPRCERALRRIFLLCDHDMDGALNDLELNNFQVKCFNAPLQPAEIVGVR 240

Query: 240 RVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVP 299
           RVVQEK+ DGVND+GLTL GFLFLH+LFI++GR+ETTW VLRKFGY D+L+LRDD LPVP
Sbjct: 241 RVVQEKKRDGVNDIGLTLEGFLFLHSLFIDRGRIETTWTVLRKFGYDDELKLRDDLLPVP 300

Query: 300 TKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAA 359
            K +PDQS+EL  E VEFLRGIF L+DIDN GA+RP+EL++LF TAPE+PW EAPYKDAA
Sbjct: 301 YKHAPDQSIELTIEVVEFLRGIFRLFDIDNHGALRPSELDELFSTAPENPWCEAPYKDAA 360

Query: 360 ETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQT 419
           E T   +LT KGF+S W LMTLL+P+ SLANLIYVGY G+PA+AL VTR+R+VDRKKQQT
Sbjct: 361 ERTMQRSLTFKGFLSGWDLMTLLNPKSSLANLIYVGYSGNPASALHVTRRRTVDRKKQQT 420

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           ERNVF CL+FGP+NAGKSALLNSFL RPFSE++    GE +A NVVDQ GG KKTLIL+E
Sbjct: 421 ERNVFHCLVFGPKNAGKSALLNSFLGRPFSESFHLPIGEHFAANVVDQLGGIKKTLILRE 480

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           +PE+GVKK LSNKE+LA+CDV +FVYD SDEYSWKR+ ELLVE+ R GE+SGYG+PCLLI
Sbjct: 481 VPEDGVKKYLSNKESLAACDVAVFVYDCSDEYSWKRSCELLVEIVRQGEESGYGMPCLLI 540

Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETE 599
           A+KDDL PY MAVQDS  V QELGIE PIPVS K  ++NNVF RI+ AA  PHLNIPETE
Sbjct: 541 AAKDDLDPYPMAVQDSVAVCQELGIEAPIPVSTKLGEMNNVFCRILSAAVRPHLNIPETE 600

Query: 600 TGRNRKRYRHLVNSSLVFVS---GVPVLLLLYF 629
           +GR RK +R LVN SL+F+S   G+ V+ L  F
Sbjct: 601 SGRRRKVFRQLVNHSLIFMSVGAGLAVVGLAAF 633

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436934|ref|XP_002275434.1| PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera] gi|296086704|emb|CBI32339.3| unnamed protein product [Vitis vinifera]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/597 (72%), Positives = 508/597 (85%), Gaps = 1/597 (0%)

Query: 23  TGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82
           TGKSSLI+ AATE+ PE V PV  PTRLP DFYPDRVPVTIIDTSSSLE++ KL EELKR
Sbjct: 20  TGKSSLISTAATETFPETVQPVLPPTRLPADFYPDRVPVTIIDTSSSLEHRAKLAEELKR 79

Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142
           ADAVVLTY+C+  + LSR  ++WL ELRRLE++ P+IV GCKLDLR +    SLE+VM P
Sbjct: 80  ADAVVLTYSCDN-TNLSRPITFWLHELRRLEVRAPVIVVGCKLDLRDERQRISLEQVMSP 138

Query: 143 IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIF 202
           IMQQFREIETC+ECSA + +QVPDVFYYAQKAVLHPTAPLFD + QTLKPRC+RALKRIF
Sbjct: 139 IMQQFREIETCIECSAASQVQVPDVFYYAQKAVLHPTAPLFDQETQTLKPRCIRALKRIF 198

Query: 203 IICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF 262
           I+CD DMDGAL+DAELNEFQV+CFNAPLQPAEIVGVKRVVQEK  DGVN LGLTLSGFLF
Sbjct: 199 ILCDRDMDGALSDAELNEFQVQCFNAPLQPAEIVGVKRVVQEKLPDGVNHLGLTLSGFLF 258

Query: 263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF 322
           LHALFIEKGRLETTW VLRKFGY D ++L   FLP+P K +PDQSVEL SE++EFL+ +F
Sbjct: 259 LHALFIEKGRLETTWTVLRKFGYDDAIKLSGSFLPIPAKRAPDQSVELTSESLEFLKRVF 318

Query: 323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLL 382
            L+DIDNDGA+R  +L+DLF TAPESPW EAPY+DAAE TA+G L+L GF+S+WALMTLL
Sbjct: 319 NLFDIDNDGALRHDDLDDLFSTAPESPWHEAPYRDAAERTAMGALSLNGFLSEWALMTLL 378

Query: 383 DPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNS 442
           DP  SLANLIY+GY GDP++ALR TR+RS+DRKK+QTERNVF+C++FGP+NAGKS+LL S
Sbjct: 379 DPASSLANLIYIGYAGDPSSALRATRRRSLDRKKRQTERNVFQCVVFGPKNAGKSSLLTS 438

Query: 443 FLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502
           FL RPFS NY  T  E+YA N +D+  G +KTLIL+EIPE+  KK LSNK++LA+CD  I
Sbjct: 439 FLGRPFSGNYTSTVDERYATNGIDELQGTRKTLILREIPEDRFKKFLSNKQSLAACDAAI 498

Query: 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 562
           FVYDSSDE SW+R  ELLVEVAR GE++G+GVPCLL+A+K DL P+ MA QDSA+V QE+
Sbjct: 499 FVYDSSDELSWRRATELLVEVARQGEETGFGVPCLLVAAKYDLDPFPMAAQDSAKVCQEM 558

Query: 563 GIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVS 619
           GIE PIPVS+KS DLNN+F RII AAEHPHL+IPET+TGR  K+YR LVN SL+  S
Sbjct: 559 GIESPIPVSVKSGDLNNLFCRIIRAAEHPHLSIPETQTGRKHKQYRQLVNHSLMLFS 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150036254|gb|ABR67417.1| ATP/GTP/Ca++ binding protein [Cucumis melo subsp. melo]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/613 (70%), Positives = 518/613 (84%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SGGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR ++   SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+EAPYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNEAPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYSGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP G KKTLIL+EIPE+GVK
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEGTKKTLILREIPEDGVK 490

Query: 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546
           K+LS+KE+LA+CD+ +FV+DSSDE SWK+  +LLVEVA  GED+GY VPCL++A+KDDL 
Sbjct: 491 KLLSSKESLAACDIALFVHDSSDESSWKKATDLLVEVASHGEDTGYEVPCLIVAAKDDLD 550

Query: 547 PYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKR 606
            + +A+QDS RV+Q++GIEPPIP+S K  D NNVF RI  AAEHPHL+IPETE GR+RK 
Sbjct: 551 SFPLAIQDSTRVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKH 610

Query: 607 YRHLVNSSLVFVS 619
           Y  L+N SL+FVS
Sbjct: 611 YHKLINRSLMFVS 623

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462328|ref|XP_004148893.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/610 (70%), Positives = 512/610 (83%), Gaps = 2/610 (0%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+VV GDRGTGKSSLIAAAATES P+ VP V  PT LP DFY D VP+TIID+SSS
Sbjct: 8   RPSVRIVVAGDRGTGKSSLIAAAATESFPDNVPSVLPPTHLPADFYADGVPLTIIDSSSS 67

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
           ++NK KL EELKRADAV+LTYAC+Q  TL+RL+SYWL ELR+LE+K P+I+ GCKLDLR 
Sbjct: 68  MDNKSKLYEELKRADAVLLTYACDQPMTLNRLTSYWLNELRQLEVKAPVILVGCKLDLRD 127

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
           +H+  S+E+++ PIM+QFREIETC+ECSA T++QVP+VFYYAQ+AVLHPTAPLFD + Q+
Sbjct: 128 EHHPMSMEDIVAPIMKQFREIETCIECSAATLLQVPEVFYYAQRAVLHPTAPLFDLERQS 187

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDG 249
           LKPRC  AL+R+F +CD DMDGAL+D ELNEFQVKCFNAPLQPAEIVGVKR+VQE    G
Sbjct: 188 LKPRCKNALRRVFTLCDRDMDGALSDEELNEFQVKCFNAPLQPAEIVGVKRIVQENLPSG 247

Query: 250 VNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVE 309
           VND GLTL GFLFLHALFIEKGRLETTWAVLRKFGY DDL L  D+LPVP+K +PDQS+E
Sbjct: 248 VNDRGLTLPGFLFLHALFIEKGRLETTWAVLRKFGYDDDLNLSGDYLPVPSKQAPDQSME 307

Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
           L++EA++FLRG+F L D DNDGA+RP ELE+LF TAPESPWDE PYKD+AE TALGNLTL
Sbjct: 308 LSNEALDFLRGVFQLLDTDNDGALRPTELEELFSTAPESPWDEPPYKDSAERTALGNLTL 367

Query: 370 KGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLF 429
            GF+S+WALMT+LDP  SLANLIY+GYGGDPA ALRVTR+R VDRKKQ+TERNVF+C +F
Sbjct: 368 NGFLSQWALMTILDPPRSLANLIYIGYGGDPAKALRVTRRRLVDRKKQKTERNVFQCFVF 427

Query: 430 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL 489
           GP+ AGKSA+LN+ + R    N    T + Y +N++++  G +KTLIL+EIPE+GV K L
Sbjct: 428 GPKKAGKSAILNTLIRRSHLNNXRWLTEDGYVMNMLER--GGQKTLILREIPEDGVHKFL 485

Query: 490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549
           SN+E LA CDV +FVYDSSDE SW R++ELLVEVAR GE SG+GVPC++ A+KDDL P  
Sbjct: 486 SNEECLAGCDVAVFVYDSSDEDSWNRSRELLVEVARKGEVSGFGVPCIVTAAKDDLDPSP 545

Query: 550 MAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRH 609
           +AVQDS RV Q LGIE PIPVS KS DL+N+F++I+ AAEHPH NIPETE GRNRKRY  
Sbjct: 546 LAVQDSVRVCQGLGIEAPIPVSSKSGDLSNIFNKILTAAEHPHANIPETERGRNRKRYYK 605

Query: 610 LVNSSLVFVS 619
           L N SL+FVS
Sbjct: 606 LFNRSLIFVS 615

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442827|ref|XP_004139182.1| PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/613 (69%), Positives = 516/613 (84%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SRGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR +    SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDEDQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDHGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+E+PYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNESPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYPGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP G KKTLIL+EIPE+GVK
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEGTKKTLILREIPEDGVK 490

Query: 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546
           K+LS+KE+LA+CD+ +FV+DSSDE SWK+  +LLVEVA  GED+GY VPCL++A+KDDL 
Sbjct: 491 KLLSSKESLAACDIALFVHDSSDESSWKKATDLLVEVASHGEDTGYEVPCLIVAAKDDLD 550

Query: 547 PYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKR 606
            + +A+QDS RV+Q++GIEPPIP+S K  D NNVF RI  AAEHPHL+IPETE GR+RK 
Sbjct: 551 SFPLAIQDSTRVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKH 610

Query: 607 YRHLVNSSLVFVS 619
           Y  L N SL+FVS
Sbjct: 611 YHKLKNHSLMFVS 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482860|ref|XP_004156425.1| PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/614 (69%), Positives = 517/614 (84%), Gaps = 1/614 (0%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SRGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR +    SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDEDQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDHGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+E+PYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNESPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYPGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGV 485
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP   NKKTLIL+EIPE+GV
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEVRNKKTLILREIPEDGV 490

Query: 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
           KK+LS+KE+LA+CD+ +FV+DSSDE SWK+  +LLVEVA  GED+GY VPCL++A+KDDL
Sbjct: 491 KKLLSSKESLAACDIALFVHDSSDESSWKKATDLLVEVASHGEDTGYEVPCLIVAAKDDL 550

Query: 546 KPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRK 605
             + +A+QDS RV+Q++GIEPPIP+S K  D NNVF RI  AAEHPHL+IPETE GR+RK
Sbjct: 551 DSFPLAIQDSTRVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRK 610

Query: 606 RYRHLVNSSLVFVS 619
            Y  L+N SL+FVS
Sbjct: 611 HYHKLINRSLMFVS 624

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125274|ref|XP_002319545.1| predicted protein [Populus trichocarpa] gi|222857921|gb|EEE95468.1| predicted protein [Populus trichocarpa]

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/616 (69%), Positives = 514/616 (83%), Gaps = 7/616 (1%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           ++GVR+VV GDRGTGKSSLI  A +++ P  +PPV  PTR+P DFYPDRVP+TIIDTSS 
Sbjct: 13  KSGVRIVVAGDRGTGKSSLIVTAISDTFPSSIPPVLPPTRMPDDFYPDRVPITIIDTSSK 72

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
           +E+ GK+ EELKRADAVVLTYAC++  TL RLS++WLPELR+LE+KVP+IV GCKLDLR 
Sbjct: 73  VEDAGKVAEELKRADAVVLTYACDRPETLDRLSTFWLPELRQLEVKVPVIVVGCKLDLRD 132

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
           ++   SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD + QT
Sbjct: 133 ENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQESQT 192

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEK---- 245
           LKPRCVRALKRIFI+CD D DGAL+DAELNEFQVKCFNAPLQP+EIVGVK+VV+EK    
Sbjct: 193 LKPRCVRALKRIFILCDLDRDGALSDAELNEFQVKCFNAPLQPSEIVGVKKVVEEKLPGG 252

Query: 246 --QHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLS 303
                GVN+ GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +
Sbjct: 253 GVNDRGVNERGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLTDELIP-SFKRA 311

Query: 304 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTA 363
           PDQS EL SEAVE+LR I+ L+D D D  +RPAELED+F TAPESPWDE PYKDAAE TA
Sbjct: 312 PDQSAELTSEAVEYLRNIYELFDSDGDNNLRPAELEDIFSTAPESPWDEPPYKDAAEKTA 371

Query: 364 LGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNV 423
           L  L++  F+S+WALMTLLDP  ++ NLIY+GY GDP AA+R+TR+R +DRKKQQ++RNV
Sbjct: 372 LSGLSVNAFLSEWALMTLLDPSRAVENLIYIGYSGDPTAAVRLTRRRRLDRKKQQSDRNV 431

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F C +FGP+ +GKSAL+NSF+ RPF +NYAPTT E YAV+VVD PGG KKTL+L+EIPE+
Sbjct: 432 FHCFVFGPKKSGKSALVNSFIGRPFYDNYAPTTEESYAVHVVDLPGGIKKTLVLREIPED 491

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
           GVKK+L NKE+LA CD+ +FVYDSSD+ SWKR  ELLVEVA  GED+GY VPCL++A+KD
Sbjct: 492 GVKKLLLNKESLAPCDIAVFVYDSSDQSSWKRATELLVEVAGHGEDTGYEVPCLIVAAKD 551

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRN 603
           DL  + MA+Q+S RV+Q++GIE PIP+S K  D NNVF RI+ AAEHPHL+IPETE GR+
Sbjct: 552 DLNSFPMAIQESTRVSQDMGIEAPIPISSKMGDTNNVFRRIVTAAEHPHLSIPETEAGRS 611

Query: 604 RKRYRHLVNSSLVFVS 619
           RK+Y  LVN SL+FVS
Sbjct: 612 RKQYNRLVNRSLMFVS 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	670
TAIR|locus:2099232	643	MIRO2 "MIRO-related GTP-ase 2"	0.888	0.925	0.665	1.2e-221
TAIR|locus:2146385	648	MIRO1 "MIRO-related GTP-ase 1"	0.886	0.916	0.647	4.6e-215
TAIR|locus:2096224	648	MIRO3 "MIRO-related GTP-ase 3"	0.892	0.922	0.511	9.3e-162
UNIPROTKB|Q5ZM83	618	RHOT2 "Mitochondrial Rho GTPas	0.832	0.902	0.408	1.6e-104
UNIPROTKB|F1NSQ4	618	RHOT1 "Mitochondrial Rho GTPas	0.823	0.893	0.399	3.7e-103
UNIPROTKB|G1K237	631	RHOT1 "Mitochondrial Rho GTPas	0.820	0.871	0.398	3.7e-103
UNIPROTKB|J9NUJ0	720	RHOT1 "Mitochondrial Rho GTPas	0.823	0.766	0.396	3.7e-103
UNIPROTKB|Q2HJF8	631	RHOT1 "Mitochondrial Rho GTPas	0.820	0.871	0.398	6e-103
UNIPROTKB|J9JIH9	659	RHOT1 "Mitochondrial Rho GTPas	0.823	0.837	0.395	9.8e-103
UNIPROTKB|Q8IXI2	618	RHOT1 "Mitochondrial Rho GTPas	0.820	0.889	0.396	9.8e-103

TAIR|locus:2099232 MIRO2 "MIRO-related GTP-ase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2140 (758.4 bits), Expect = 1.2e-221, P = 1.2e-221
 Identities = 396/595 (66%), Positives = 492/595 (82%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI+A A+E+ P+ VP V  P  LP D +PD +P+TI+DT SS++N+ KL EE ++AD
Sbjct:    27 KSSLISAVASETFPDNVPRVLPPITLPADAFPDYIPITIVDTPSSIDNRIKLIEEFRKAD 86

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
              V+LTYAC+Q STL RLSSYWLPELRRLEIK P+IV GCKLDLR + +   LE++M PIM
Sbjct:    87 VVLLTYACDQPSTLDRLSSYWLPELRRLEIKAPVIVVGCKLDLRDERSPARLEDIMSPIM 146

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             +++REIETC+ECSA T+IQVPDVFY+A KAVLHPT PLFD ++Q LKPR  RA++RIF +
Sbjct:   147 KEYREIETCIECSALTLIQVPDVFYFASKAVLHPTFPLFDQEKQCLKPRLRRAVQRIFNL 206

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
             CDHD+DGALNDAELN+FQV CF APL P E++GVK+VVQE+Q DGV DLGLTL GFLFL 
Sbjct:   207 CDHDLDGALNDAELNDFQVNCFGAPLDPVELMGVKKVVQERQPDGVTDLGLTLPGFLFLF 266

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGL 324
             +LFIE+GR ET WA+LRK GY D LEL  + LPVP K SPDQS+EL +EA++FL GIF L
Sbjct:   267 SLFIERGRPETAWAILRKCGYNDSLELHAELLPVPAKQSPDQSIELTNEAMDFLSGIFQL 326

Query:   325 YDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDP 384
             YD+DNDGA++PAEL+DLF TAP+SPW E PYK+AAE T  G+LT+ GF+S+WALMTLLDP
Sbjct:   327 YDLDNDGALQPAELDDLFQTAPDSPWLEDPYKEAAEKTPGGSLTINGFLSEWALMTLLDP 386

Query:   385 RHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL 444
             R SLANL Y+GYG DPA+   VTRKRSVDRKKQ+TERNVF+C +FGP+ +GKSALL+SFL
Sbjct:   387 RKSLANLTYIGYGHDPASTFSVTRKRSVDRKKQRTERNVFQCFVFGPKKSGKSALLDSFL 446

Query:   445 ERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504
              R FS +Y  T GE+YA NV+DQPGG+KKTLIL+EIPE+ VKK L+NKE+LA+CDV + V
Sbjct:   447 GRKFSNSYKATMGERYAANVIDQPGGSKKTLILREIPEDRVKKFLTNKESLAACDVAVVV 506

Query:   505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 564
             YDSSD YSW++ +E+L+EVAR GE+ GYG PCLL+A+KDDL PY M+VQ+S RV  ELGI
Sbjct:   507 YDSSDVYSWRKAREILMEVARRGEERGYGTPCLLVAAKDDLDPYPMSVQESDRVCMELGI 566

Query:   565 EPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVS 619
             + P+ +SMK  + N++FSRI+  AE+PH++IPETE+GR  +  R LVNSSL+FVS
Sbjct:   567 DIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSSLLFVS 621

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2146385 MIRO1 "MIRO-related GTP-ase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2078 (736.6 bits), Expect = 4.6e-215, P = 4.6e-215
 Identities = 386/596 (64%), Positives = 482/596 (80%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI AAAT+S P  VPPV    +LP +F+PD +PVTI+DTSS  E++  + EELKRAD
Sbjct:    30 KSSLIVAAATDSFPPNVPPVLPDYKLPIEFFPDGIPVTIVDTSSRPEDRDIVAEELKRAD 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
             AVVLTYAC++  TL RLS YWLPELRRLE+K+PIIVAGCKLD R D+N  SLE+VM PIM
Sbjct:    90 AVVLTYACDRPETLERLSEYWLPELRRLEVKIPIIVAGCKLDFRDDNNQVSLEQVMSPIM 149

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             QQFREIETC+ECSA   +Q  +VFYYAQK VLHPT PLFD D Q LKPRCVRALKRIFI+
Sbjct:   150 QQFREIETCIECSALKQLQAQEVFYYAQKTVLHPTGPLFDQDSQALKPRCVRALKRIFIL 209

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
             CDHD DGAL++AELN+FQVKCF+APLQP+EI GVKRVVQEK  +GVN+ GLT++GFLFLH
Sbjct:   210 CDHDRDGALSEAELNDFQVKCFHAPLQPSEIEGVKRVVQEKLPEGVNERGLTVTGFLFLH 269

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPT-KLSPDQSVELASEAVEFLRGIFG 323
             ALFIEKGRLETTW VLRKFGY +D+ L ++ LP    K +PDQS EL + A++FL+G++ 
Sbjct:   270 ALFIEKGRLETTWTVLRKFGYNNDIRLAEELLPSAIFKRAPDQSFELTNAAIDFLKGMYM 329

Query:   324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLD 383
             L+D D D  +RP E+EDLF TAPESPW EAPY+DAAE TALG L+   F+S W+LMTLL+
Sbjct:   330 LFDDDQDNNLRPQEIEDLFSTAPESPWKEAPYEDAAEKTALGGLSFDAFLSMWSLMTLLE 389

Query:   384 PRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSF 443
             P  S+ NLIY+G+ GDP+ A+RVTR+R +DRKKQQ ER VF+C +FGP NAGKSALLN F
Sbjct:   390 PARSVENLIYIGFPGDPSTAIRVTRRRRLDRKKQQCERKVFQCFVFGPNNAGKSALLNCF 449

Query:   444 LERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
             L R +++N   TT E+YAVN+VD+ G  KKTLI++EIPE+GV+ + S+KE+LA+CD+ +F
Sbjct:   450 LGRSYTDNQESTTDERYAVNMVDESGA-KKTLIMREIPEDGVQGLFSSKESLAACDIAVF 508

Query:   504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563
             VYDSSDE SWKR  +LLVEVA  GE +GY VPCL++++KDDL    +++Q+S R+TQ++G
Sbjct:   509 VYDSSDESSWKRATQLLVEVANYGEATGYEVPCLMVSAKDDLDSSPISIQESTRMTQDMG 568

Query:   564 IEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVS 619
             IEPP+ +S K  D NN+F +I+ AA+HPHL+IPETE G++RK Y  L+N SL+ VS
Sbjct:   569 IEPPVSISSKLGDFNNLFRKILTAAQHPHLSIPETEAGKSRKHYNRLINRSLMAVS 624

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;NAS

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000003 "reproduction" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

TAIR|locus:2096224 MIRO3 "MIRO-related GTP-ase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
 Identities = 312/610 (51%), Positives = 431/610 (70%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI AAA  +    +P +   T LP +F+PDR+P T+IDTSS  E+KGK+ +E+++AD
Sbjct:    27 KSSLIMAAARNTFHPNIPSLLPYTNLPSEFFPDRIPATVIDTSSRPEDKGKVVKEVRQAD 86

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
             A+VLT+A ++  TL RLS YWLP  R+LE++VPIIVAG ++D +  +N  S+E++   +M
Sbjct:    87 AIVLTFAFDRPETLDRLSKYWLPLFRQLEVRVPIIVAGYEVDNKEAYNHFSIEQITSALM 146

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             +Q+RE+ET ++ SA  + Q  DV YYAQKAV+ P  P+FD +   LKPRC+ ALKRIF++
Sbjct:   147 KQYREVETSIQWSAQRLDQAKDVLYYAQKAVIDPVGPVFDQENNVLKPRCIAALKRIFLL 206

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
              DH+MDG L+D ELNE Q KCF+ PL P EI  +K V+Q     GVN+ GLTL GFLFL+
Sbjct:   207 SDHNMDGILSDEELNELQKKCFDTPLVPCEIKQMKNVMQVTFPQGVNERGLTLDGFLFLN 266

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPT-KLSPDQSVELASEAVEFLRGIFG 323
                IE+ R++T W +LRKFGY +DL L DD +P  + K   DQSVEL + A+EFLR ++ 
Sbjct:   267 TRLIEEARIQTLWTMLRKFGYSNDLRLGDDLVPYSSFKRQADQSVELTNVAIEFLREVYE 326

Query:   324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLD 383
              +D + D  + P E+  LF TAPESPW +  YKD  E    G L+L+ F+S W+LMTL+D
Sbjct:   327 FFDSNGDNNLEPHEMGYLFETAPESPWTKPLYKDVTEENMDGGLSLEAFLSLWSLMTLID 386

Query:   384 PRHSLANLIYVGY-GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNS 442
             P  SL  L+Y+ +   DP++A+RVTRKR +DRK++++ER V +C +FGP+NAGKSALLN 
Sbjct:   387 PPRSLEYLMYIRFPSDDPSSAVRVTRKRVLDRKEKKSERKVVQCFVFGPKNAGKSALLNQ 446

Query:   443 FLERPF---SENYAPTTGEQYAVNVVDQPG---GNKKTLILQEIPEEGVKKILSNKEALA 496
             F+ R +   S N   +T E YAVN+V +PG      KTL+L+E+  +    +LS KEALA
Sbjct:   447 FIGRSYDDDSNNNNGSTDEHYAVNMVKEPGVISDTDKTLVLKEVRIKDDGFMLS-KEALA 505

Query:   497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA 556
             +CDV IF+YDSSDEYSW R  ++L EVA + +DSGY  PCL++A+K DL P+ +A+Q+S 
Sbjct:   506 ACDVAIFIYDSSDEYSWNRAVDMLAEVATIAKDSGYVFPCLMVAAKTDLDPFPVAIQEST 565

Query:   557 RVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLV 616
             RVTQ++GI+ PIP+S K  D++N+F +I+ AAE+PHLNIPE E+   +KR   L N SL+
Sbjct:   566 RVTQDIGIDAPIPISSKLGDVSNLFRKILTAAENPHLNIPEIES--KKKRSCKLNNRSLM 623

Query:   617 FVS-GVPVLL 625
              VS G  VL+
Sbjct:   624 AVSIGTAVLI 633

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

UNIPROTKB|Q5ZM83 RHOT2 "Mitochondrial Rho GTPase 2" [Gallus gallus (taxid:9031)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 239/585 (40%), Positives = 335/585 (57%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + + +L EE+ +A+
Sbjct:    17 KTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQTEDELQEEIAKAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+     +S+E ++ 
Sbjct:    77 VVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ---MGSSMEVIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ L+P C RAL RI
Sbjct:   133 PIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQLRPACSRALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F + D D +  L+D ELN FQ  CF  PL P  +  VK VV +   DGV D GLTL+GFL
Sbjct:   193 FNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDGVQDNGLTLNGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FL+ LFI++GR ETTW +LR+FGY D+LEL DD+L    +L P  S EL     +FL+ +
Sbjct:   253 FLNTLFIQRGRHETTWTILRRFGYDDELELTDDYLYPQFRLPPGCSTELNHLGYQFLQRL 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D D DGA+ PAEL++ F   P  PW    Y     TT  G L+L GF+ +W L+  
Sbjct:   313 FEKHDKDQDGALSPAELQNFFSVFPCMPWGPELYNTVC-TTDKGLLSLHGFLCQWTLIAY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD RH L  L Y+GY           AL VTR++ +D +K QT+RNVF C + G + AGK
Sbjct:   372 LDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVFLCKVLGARGAGK 431

Query:   437 SALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL 495
             SA L +FL R  + +  +P     Y +N V Q  G +K LIL E+  E        K + 
Sbjct:   432 SAFLQAFLGRSLAAQRESPGEPSPYTINTV-QVNGQEKYLILHEVSAE----TQFTKPSD 486

Query:   496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS 555
             A+CDV   +YD SD  S+     +  +      DS   +PC+ +ASK DL   +     S
Sbjct:   487 AACDVACLIYDLSDPKSFSYCASIYKQHYM---DSQ--IPCVFVASKTDLPEASQQPGLS 541

Query:   556 -ARVTQELGIEPPIPVSMKSKDLNN--VFSRIIWAAEHPHLNIPE 597
              A    +  + PP   S  S+      +++++  AA  PHLN  E
Sbjct:   542 PAEFCYKHCLPPPFLFSCHSQGPPGTAIYTKLATAATFPHLNAVE 586

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISS

GO:0019725 "cellular homeostasis" evidence=ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0047497 "mitochondrion transport along microtubule" evidence=ISS

UNIPROTKB|F1NSQ4 RHOT1 "Mitochondrial Rho GTPase" [Gallus gallus (taxid:9031)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 233/583 (39%), Positives = 340/583 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + +N  +L  E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQNDEQLYHEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N ++++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKNSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FRISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKNVSDGVADNGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD + EL   A  FL+ I
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLELTPEYLFPLLKIPPDCTTELNHHAYLFLQSI 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYMPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +  GK
Sbjct:   372 LDVQRCLEYLGYLGYSILAEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVVGMKGCGK 431

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R            +  YA+N V    G +K L+L ++ +    + L++ E 
Sbjct:   432 SGVLQALLGRNLMRQRQIRAEHKSYYAINTV-YVYGQEKYLLLHDVSDS---EFLTDAET 487

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLG-EDSGYGVPCLLIASKDDLKPYTMAVQ 553
             +  CDV   VYD S+  S+    E  V + +    DS   +PCL++A+K DL        
Sbjct:   488 I--CDVVCLVYDVSNPKSF----EYCVRIFKQHFMDSR--IPCLVVAAKSDLHEVRQEYS 539

Query:   554 DS-ARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
              S A   ++  + PP   +  + D+   ++F ++   A +PH+
Sbjct:   540 ISPAEFCKKHKMPPPQAFTCNTVDMPSKDIFVKLTTMAMYPHV 582

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

UNIPROTKB|G1K237 RHOT1 "Mitochondrial Rho GTPase" [Bos taurus (taxid:9913)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 233/585 (39%), Positives = 343/585 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADGGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVGTNEKGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNCGK 444

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R  +         +  YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLTRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             L  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   501 L--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 553

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
             +  D  R  +   + PP   +  + D    ++F ++   A +PH+
Sbjct:   554 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 595

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|J9NUJ0 RHOT1 "Mitochondrial Rho GTPase" [Canis lupus familiaris (taxid:9615)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 233/587 (39%), Positives = 343/587 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N+GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNSGK 444

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             +  CDV   VYD S+  S++    +  +      DS   +PCL+IA+K DL    + Y++
Sbjct:   501 I--CDVVCLVYDVSNSKSFEYCARIFKQHFM---DSR--IPCLIIAAKSDLHEVKQDYSI 553

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHLNI 595
             +  D  R  +   + PP   +  + D    ++F ++   A +PH  +
Sbjct:   554 SPADFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHARL 597

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q2HJF8 RHOT1 "Mitochondrial Rho GTPase 1" [Bos taurus (taxid:9913)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 233/585 (39%), Positives = 343/585 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADGGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNEKGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNCGK 444

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R  +         +  YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLTRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             L  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   501 L--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 553

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
             +  D  R  +   + PP   +  + D    ++F ++   A +PH+
Sbjct:   554 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 595

GO:0047497 "mitochondrion transport along microtubule" evidence=ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0019725 "cellular homeostasis" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|J9JIH9 RHOT1 "Mitochondrial Rho GTPase" [Homo sapiens (taxid:9606)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 232/587 (39%), Positives = 342/587 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   372 LDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGK 431

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   432 SGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 487

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             +  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   488 I--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 540

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHLNI 595
             +  D  R  +   + PP   +  + D    ++F ++   A +PH  +
Sbjct:   541 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHARL 584

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|Q8IXI2 RHOT1 "Mitochondrial Rho GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 232/585 (39%), Positives = 342/585 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   372 LDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGK 431

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   432 SGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 487

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             +  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   488 I--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 540

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
             +  D  R  +   + PP   +  + D    ++F ++   A +PH+
Sbjct:   541 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 582

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0019725 "cellular homeostasis" evidence=IMP

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0047497 "mitochondrion transport along microtubule" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NVC5	MIRO1_DANRE	3, ., 6, ., 5, ., -	0.3874	0.8388	0.9079	yes	no
P0CO78	GEM1_CRYNJ	3, ., 6, ., 5, ., -	0.3974	0.8656	0.8454	yes	no
Q6FIR8	GEM1_CANGA	3, ., 6, ., 5, ., -	0.3572	0.8522	0.8798	yes	no
Q94263	MIRO_CAEEL	3, ., 6, ., 5, ., -	0.3425	0.8417	0.9024	yes	no
Q5ZM83	MIRO2_CHICK	3, ., 6, ., 5, ., -	0.4053	0.8507	0.9223	yes	no
Q6C2J1	GEM1_YARLI	3, ., 6, ., 5, ., -	0.3137	0.8626	0.8691	yes	no
Q5B5L3	GEM1_EMENI	3, ., 6, ., 5, ., -	0.3544	0.8656	0.9148	yes	no
Q6CY37	GEM1_KLULA	3, ., 6, ., 5, ., -	0.3279	0.8507	0.8649	yes	no
Q4WN24	GEM1_ASPFU	3, ., 6, ., 5, ., -	0.3643	0.8656	0.9177	yes	no
O59781	GEM1_SCHPO	3, ., 6, ., 5, ., -	0.3365	0.8597	0.9142	yes	no
Q758X6	GEM1_ASHGO	3, ., 6, ., 5, ., -	0.3312	0.8626	0.8744	yes	no
Q298L5	MIRO_DROPS	3, ., 6, ., 5, ., -	0.3616	0.8537	0.8813	yes	no
Q4I2W2	GEM1_GIBZE	3, ., 6, ., 5, ., -	0.3559	0.8716	0.9314	yes	no
P39722	GEM1_YEAST	3, ., 6, ., 5, ., -	0.3518	0.9104	0.9214	yes	no
Q8IMX7	MIRO_DROME	3, ., 6, ., 5, ., -	0.3630	0.8537	0.8773	yes	no
Q2HJF8	MIRO1_BOVIN	3, ., 6, ., 5, ., -	0.3957	0.8567	0.9096	yes	no
Q6DIS1	MIRO2_XENTR	3, ., 6, ., 5, ., -	0.3833	0.8358	0.9090	yes	no
Q2UM43	GEM1_ASPOR	3, ., 6, ., 5, ., -	0.3627	0.8656	0.9162	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.833.1 hypothetical protein (640 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	670
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	9e-84
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	2e-63
pfam08356	89	pfam08356, EF_assoc_2, EF hand associated	3e-41
pfam08355	75	pfam08355, EF_assoc_1, EF hand associated	3e-28
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-17
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-17
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-14
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-13
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-13
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-13
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-13
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-12
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-11
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-10
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-09
pfam00071	162	pfam00071, Ras, Ras family	1e-09
cd00880	161	cd00880, Era_like, E	2e-09
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-08
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-08
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	7e-08
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-07
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-07
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	5e-07
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-07
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	9e-07
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-06
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	4e-06
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	6e-06
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	7e-06
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	9e-06
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-05
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	7e-05
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	9e-05
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-04
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-04
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-04
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-04
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-04
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	5e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-04
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-04
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	7e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	7e-04
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	8e-04
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	8e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	9e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.001
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	0.001
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	0.002
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	0.002
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.002
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	0.002
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	0.003
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	0.004

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score =  260 bits (667), Expect = 9e-84
 Identities = 89/168 (52%), Positives = 117/168 (69%)

Query: 11  TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
             VR+V++GD G GKSSLI +  +E  PE VP V     +P D  P+RVP TI+DTSS  
Sbjct: 1   KDVRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRP 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           +++  L  E+++A+ + L Y+ ++ STL R+ + WLP +RRL +KVPII+ G K DLR  
Sbjct: 61  QDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 120

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
            +   LEE M PIM +FREIETCVECSA T+I V +VFYYAQKAVLHP
Sbjct: 121 SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score =  207 bits (530), Expect = 2e-63
 Identities = 78/187 (41%), Positives = 111/187 (59%), Gaps = 10/187 (5%)

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           +RNVF C + G + +GKSALL +FL R FS+N Y+PT   +YAVN V+ P G +K LIL+
Sbjct: 1   QRNVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVP-GQEKYLILR 59

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
           E+ E+    IL N   LA+CDV   VYDSSD  S+        EV +     G  +PCL 
Sbjct: 60  EVGEDEE-AILLNDAELAACDVACLVYDSSDPNSFSY----CAEVYKKYFMLG-EIPCLF 113

Query: 539 IASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAEHPHLNIP 596
           +A+K DL      A        ++LG+ PP+  S +  D  N +F+++  AA++PHL+IP
Sbjct: 114 VAAKADLDEQQQRAEVQPDEFCRKLGLPPPLHFSSRLGDSSNELFTKLATAAQYPHLSIP 173

Query: 597 ETETGRN 603
           E E+G+ 
Sbjct: 174 ELESGKT 180

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|192013 pfam08356, EF_assoc_2, EF hand associated

 Score =  144 bits (366), Expect = 3e-41
 Identities = 56/88 (63%), Positives = 66/88 (75%)

Query: 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYG 286
           N PLQP ++ G+KRVVQE+  DGVN+ GLTL GFLFL+ LFIE+GR ETTW +LRKFGY 
Sbjct: 1   NKPLQPEDLEGIKRVVQEEIPDGVNEKGLTLKGFLFLNKLFIERGRHETTWTILRKFGYT 60

Query: 287 DDLELRDDFLPVPTKLSPDQSVELASEA 314
           D L LRDDFL     + PDQSVEL+   
Sbjct: 61  DSLSLRDDFLHPKFDVPPDQSVELSPAG 88

This region predominantly appears near EF-hands (pfam00036) in GTP-binding proteins. It is found in all three eukaryotic kingdoms. Length = 89

>gnl|CDD|192012 pfam08355, EF_assoc_1, EF hand associated

 Score =  107 bits (270), Expect = 3e-28
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG----GDPAAAL 404
           PW E  + D+  T   G LTL+G++++W+L TLLD + +L  L Y+G+         +A+
Sbjct: 1   PWLETNFPDSTVTNEDGYLTLQGWLAQWSLTTLLDYKTTLEYLAYLGFPVGEQESQTSAI 60

Query: 405 RVTRKRSVDRKKQQT 419
            VTR+R +DRKK QT
Sbjct: 61  TVTRERKLDRKKGQT 75

This region typically appears on the C-terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis). The EF hand associated region is found in yeast, vertebrates and plants. Length = 75

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 88.2 bits (219), Expect = 6e-21
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP--DRVPVTIIDTSSSLE 71
           +VVV+GD+G+GKSSL++       P +   +   T          D   + I D     E
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKL 125
            K +    +K ADA++L Y    + +L+ +S    WLP LR+L  K+P+I+ G KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 50/168 (29%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 16  VVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVTIIDTSSSL 70
           VVVG  G GKSSL+ A     V E V  V   TR  PD Y       +V + ++DT    
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGE-VSDVPGTTRD-PDVYVKELDKGKVKLVLVDTPGLD 58

Query: 71  ENKGKLNEE-----LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL 125
           E  G   EE     L+ AD ++L      + +        L  LR+  I  PII+ G K+
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGI--PIILVGNKI 116

Query: 126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQK 173
           DL        +EE++              E SA T   V ++F    +
Sbjct: 117 DLL---EEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 39/180 (21%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV-------TII 64
           +++VVVGD   GK+ L+ +  T   P E VP V        D Y   V V        + 
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVF-------DNYSANVTVDGKQVNLGLW 53

Query: 65  DTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV 116
           DT+          EE  R         D  +L ++ +  S+   + + W PE++     V
Sbjct: 54  DTAGQ--------EEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNV 105

Query: 117 PIIVAGCKLDLRGDHNATS-LEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVF 168
           PII+ G K+DLR D N    LE+   PI  +      +EI     +ECSA T   + +VF
Sbjct: 106 PIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 46/192 (23%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIID-TSSSLENK 73
           +VVVGD   GK+ L+    T + PE                 D VP T+ +  S+ +E  
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPE-----------------DYVP-TVFENYSADVEVD 42

Query: 74  GKL----------NEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK 115
           GK            E+  R         D  ++ ++ +  ++   +   W PE++     
Sbjct: 43  GKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPN 102

Query: 116 VPIIVAGCKLDLRGD-HNATSLEEV-MGPIMQQF-----REIETC--VECSATTMIQVPD 166
           VPII+ G KLDLR D      L +    P+  +      + I     +ECSA T   V +
Sbjct: 103 VPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVRE 162

Query: 167 VFYYAQKAVLHP 178
           VF  A +A L+ 
Sbjct: 163 VFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIP-- 481
           ++ G    GKS+LLN+ L     E       T      V  +D+    K  L+L + P  
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKG---KVKLVLVDTPGL 57

Query: 482 -EEGVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
            E G        +  L   D+ + V DS+D  S     E   ++  L      G+P +L+
Sbjct: 58  DEFGGLGREELARLLLRGADLILLVVDSTDRES-----EEDAKLLILRRLRKEGIPIILV 112

Query: 540 ASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            +K DL     +          ++   P   VS K+ + ++ +F ++I
Sbjct: 113 GNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV---HAPTRLPPDFYPDRVPVTIIDTSS 68
           V++VVVGD G GK+ L+   A  S PE+ VP V   +  T   P+     + + + DT+ 
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKI--IELALWDTAG 61

Query: 69  SLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIV 120
                    E+  R         D +++ Y+ +  ++L  +   W PE+       PI++
Sbjct: 62  --------QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVL 113

Query: 121 AGCKLDLRGDHNATSLEEVMGP-IMQQFREIETC--------VECSATTMIQVPDVFYYA 171
            G K DLR D N+ S     G   +   +             +ECSA  M  V +VF  A
Sbjct: 114 VGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAA 173

Query: 172 QKAVL 176
               L
Sbjct: 174 INVAL 178

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G + +GKS+LL+  +   F        G+  AV+ + +  G+   L + +     
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTL-EVDGDTGLLNIWD-FGGR 58

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            +    +   +   D  + VYD +D  S      L+  +  L    G  +P +L+ +K 
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL-RKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 68.1 bits (166), Expect = 7e-13
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
             F+ ++ G    GK+ LLN  +   F E Y PT G       ++    N K  +     
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
           +E  + +          +  + VYDS+  E S + T+E L E+  L  D    VP LL+ 
Sbjct: 64  QEEYRSLRPEYY--RGANGILIVYDSTLRESSDELTEEWLEELRELAPD---DVPILLVG 118

Query: 541 SKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRII 585
           +K DL  +         + Q       + ++ K+         ++
Sbjct: 119 NKIDL--FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL 161

Length = 219

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPP-----VHAPTRLPPDFYPDRVPVTIIDTS 67
            ++VV+GD G GK++L+     +  PE  PP       A T  P   Y   + + + DT+
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP---YRRNIKLQLWDTA 62

Query: 68  SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLD 126
              E +    E  + A+ +++ Y    + +   L+  WL ELR L    VPI++ G K+D
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 127 LRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSA--TTMIQVPDVFYYAQK 173
           L  + +              L  +    +         +E SA   T   V ++F    +
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182

Query: 174 AVLHPTAPLFDHDEQTLKPR 193
            +L     L   +E     R
Sbjct: 183 KLLEEIEKLVLKNELRQLDR 202

Length = 219

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 12  GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
             ++V+VGD   GK++L+   A +S PE  VP V        +    R+ +++ DTS S 
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSP 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
                       +DAV++ +  ++  TL  +   W  E+R      P+++ GCK DLR D
Sbjct: 61  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTD 120

Query: 131 -HNATSL-EEVMGPI-----MQQFREI--ETCVECSATTM-IQVPDVFYYAQKAVL 176
               T L  +   P+         ++I     VECSA T    V DVF  A  A L
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 61.3 bits (150), Expect = 4e-11
 Identities = 44/169 (26%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIID 65
            ++V++GD G GK+SL+         E     +  T +  DF    + V        I D
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSEN----YKST-IGVDFKSKTIEVDGKKVKLQIWD 55

Query: 66  TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCK 124
           T+     +   +   + A   +L Y    + +   L   WL EL+      +PII+ G K
Sbjct: 56  TAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLD-KWLNELKEYAPPNIPIILVGNK 114

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIE--TCVECSATTMIQVPDVFYYA 171
            DL  D    S EE      QQF +       E SA T   V + F   
Sbjct: 115 SDLE-DERQVSTEEA-----QQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 13  VRVVVVGDRGTGKSSLIAAAA--TESVPEKVPPVHAPTRLPPDFY------PDRVPVTII 64
           ++ VVVGD   GK+ LI A A        ++   H PT    D Y       +R    + 
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 65  DTSSSLENKGKLNEELK-------RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP 117
             S SL       +  K       R+D V+L ++    ++L  + + W PE+R    +VP
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP 122

Query: 118 IIVAGCKLDLR 128
           +I+ GCKLDLR
Sbjct: 123 VILVGCKLDLR 133

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 11/172 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VVVGD   GK++L+   A +  PE  VP V        +    R+ +++ DTS S   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-- 130
                     +DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 131 -------HNATSLEEVMGPIMQQFREIETCVECSAT-TMIQVPDVFYYAQKA 174
                  H  T +    G  M +     T +ECSA  +   V D+F+ A  A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 24/174 (13%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDT 66
           ++V+VGD G GKSSL+        PE+    + PT +  DFY   + V        I DT
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEE----YIPT-IGVDFYTKTIEVDGKTVKLQIWDT 55

Query: 67  SSSLENKGKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCK 124
            +  E    L     R A   +L Y    + +   +   WL E+ R  +  VPI++ G K
Sbjct: 56  -AGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADENVPIVLVGNK 113

Query: 125 LDLRGDHNATSLEEVMGPIMQQF-REIETC-VECSATTMIQVPDVFYYAQKAVL 176
            DL       S EE      +   +E+    +E SA T   V + F    + +L
Sbjct: 114 CDLEDQR-VVSTEEG-----EALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 428 LFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLI----LQEIP 481
           +FG  N GKS+LLN+ L +          TT +         P G    LI    L E  
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGP-VVLIDTPGLDEEG 60

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
             G +++   ++     D+ + V DS            + E A+LG     G P LL+ +
Sbjct: 61  GLGRERVEEARQVADRADLVLLVVDS--------DLTPVEEEAKLGLLRERGKPVLLVLN 112

Query: 542 KDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRII 585
           K DL P          R  + L   P I VS      ++ +  +I 
Sbjct: 113 KIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIA 158

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 30/176 (17%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPV--TIID 65
           ++ V+VGD   GK+SLI +  T   P      + PT    D +      D  PV   + D
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYP----TEYVPTAF--DNFSVVVLVDGKPVRLQLCD 54

Query: 66  TSSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124
           T+   +   KL        D  +L ++    S+   +S  W+PE+R+   K PII+ G +
Sbjct: 55  TAGQ-DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQ 113

Query: 125 LDLRGDHN-----ATSLEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVF 168
            DLR D N     A   E+   P+ Q        +I  C  +ECSA T   + +VF
Sbjct: 114 ADLRTDVNVLIQLARYGEK---PVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 22/178 (12%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPV---HAPTRLPPDFYPDRVPVTIIDTSSSL 70
           ++V+VGD   GK+SL+        PE+  P    +  T    D  P  V + + DT+   
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKP--VQLALWDTAGQE 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           E +        +A  +++ +A +   +L  + + W+ E+RR    VP+I+ G K DLR +
Sbjct: 61  EYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQE 120

Query: 131 HNATSLEEVMGPIMQQFREIETC------------VECSATTMIQVPDVFYYAQKAVL 176
             A +          +F  I+              +ECSA T   V DVF  A +A L
Sbjct: 121 --AVAKGN---YATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAAL 173

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 10/178 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+    T + P E +P V              V + + DT+   E
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + +  ++ ++    S+   +   W PE+      VPI++ G K DLR D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 132 NATSL--EEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVLHPTA 180
           +      E+   PI  Q      ++I     +ECSA     V +VF  A +AVL+PT 
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR------GDH-NATS 135
           AD  +L ++   +++   +   W+PELR     VPI++ G KLDLR       DH  A  
Sbjct: 73  ADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFADHPGAVP 132

Query: 136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
           +    G  +++       +ECS+ T   V  VF  A K VL
Sbjct: 133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 52.5 bits (126), Expect = 7e-08
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV-------TII 64
           ++ VVVGD   GK+ L+ +  T + P E +P V        D Y   V V        + 
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-------DNYSANVMVDGKPVNLGLW 54

Query: 65  DTSSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123
           DT+   E+  +L      + D  ++ ++    ++   + + W PE+R      PII+ G 
Sbjct: 55  DTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 113

Query: 124 KLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKA 174
           KLDLR D +      E+ + PI     +   +EI     +ECSA T   +  VF  A +A
Sbjct: 114 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 173

Query: 175 V 175
           V
Sbjct: 174 V 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 36/174 (20%)

Query: 14  RVVVVGDRGTGKSSL-IAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIID 65
           ++VV+G  G GKS+L I   + E V E  P +        D Y  ++ V        I+D
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-------DSYRKQIVVDGETYTLDILD 53

Query: 66  TSSSLENKGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRR--LEIK----VPI 118
           T+   E     ++ ++  D  +L Y+  +++S         +  +R   L +K    VPI
Sbjct: 54  TAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEE------IKNIREQILRVKDKEDVPI 107

Query: 119 IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYY 170
           ++ G K DL  +    S EE      +   E   C  +E SA T I + ++F  
Sbjct: 108 VLVGNKCDL-ENERQVSTEEG-----EALAEEWGCPFLETSAKTNINIDELFNT 155

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD------RVPVTIIDTS 67
           ++V+VGD   GK+ L+   + +  PE    V+ PT    ++  D      +V + + DT+
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTVFE-NYVADIEVDGKQVELALWDTA 57

Query: 68  SSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
              E+  +L        D +++ ++ +   +L  +   W PE++     VPII+ G K D
Sbjct: 58  GQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 116

Query: 127 LRGDHNATSLEEVM-----------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
           LR D    ++ E+            G  M +       +ECSA T   V +VF  A +A 
Sbjct: 117 LRND--EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAA 174

Query: 176 L 176
           L
Sbjct: 175 L 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ + A ++ PE+ VP V     +       +  + + DT+   E
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ-E 59

Query: 72  NKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           +  +L        D  ++ ++    ++   +   W+PEL+     VP ++ G ++DLR D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDD 119

Query: 131 HN--ATSLEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVL 176
               A   +    PI  +      +EI  C  VECSA T   +  VF  A  A+L
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VVVGD   GK++L+   A ++ PE  VP V        +    R+ + + DTS S   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
                     +DAV++ +  ++  TL  +   W  E +       +++ GCKLD+R D +
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 133 ATSLEEV----MGPIMQQ-----FREIETC--VECSATTMIQ-VPDVFYYAQKAVLHPTA 180
             +L E+    + P+  +      R++     VECS+      V DVF+    A +    
Sbjct: 123 --TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180

Query: 181 PLFDHDEQTLKPRCVRALKRI 201
           P              R LKRI
Sbjct: 181 PSLKRSTSR------RGLKRI 195

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKK 473
           RK + + R   R LL G  NAGK+ +L        SE+ +  T  Q         G N K
Sbjct: 6   RKLKPSSRQEVRILLLGLDNAGKTTILKQLA----SEDISHITPTQ---------GFNIK 52

Query: 474 TLILQEIPEE-----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
            +             G +KI    +    + DV I+V DS+D   ++   + LVE+  L 
Sbjct: 53  NVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVEL--LE 110

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQDSARV 558
           E+   GVP L+ A+K DL       ++ A  
Sbjct: 111 EEKLAGVPVLVFANKQDL-LTAAPAEEVAEA 140

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIP- 481
            + ++ G  N GKS LLN  L    S   Y P T   Y   V+++  G      L +   
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAG 60

Query: 482 EEGVKKI--LSNKEALAS---CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536
           +E    I  L  +   +S    D+ I V D          K+   E+    E    GVP 
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLD----VEEILEKQ-TKEIIHHAE---SGVPI 112

Query: 537 LLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571
           +L+ +K DL+   +     A +  +L  EP IP+S
Sbjct: 113 ILVGNKIDLRDAKLKTHV-AFLFAKLNGEPIIPLS 146

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 17/128 (13%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL----QE 479
           F+ +L G    GK++LL  F++  FSENY  T G  +    ++  G   K  I     QE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 480 IPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                 + I S+  +         I VYD ++  S++   + L E+      +   +P +
Sbjct: 61  R----FRSITSSYYR----GAHGAILVYDVTNRESFENLDKWLNELKEYAPPN---IPII 109

Query: 538 LIASKDDL 545
           L+ +K DL
Sbjct: 110 LVGNKSDL 117

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +E
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + I S+    A     I VYD +D+ S+   K+ L E+ R   +    V  LL+ +K 
Sbjct: 63  RFRTITSSYYRGA--HGIIIVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKC 117

Query: 544 DLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
           DL    +     A+    ELGI P +  S K+
Sbjct: 118 DLTDKKVVDYTEAKEFADELGI-PFLETSAKN 148

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 31/179 (17%)

Query: 409 KRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTTG--------- 457
           K  ++  K +   + F+  + G  N GKS+LLN+ L  +R    +   TT          
Sbjct: 189 KDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL 248

Query: 458 EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK 517
               + ++D  G  +    ++ +   G++K  S K A+   D+ I+V D+S      +  
Sbjct: 249 NGILIKLLDTAGIREHADFVERL---GIEK--SFK-AIKQADLVIYVLDASQ--PLTKDD 300

Query: 518 ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
            L++++ +  +      P +L+ +K DLK  ++    S++V     +      S K   
Sbjct: 301 FLIIDLNKSKK------PFILVLNKIDLKINSLEFFVSSKVLNSSNL------SAKQLK 347

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 25/128 (19%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTG--------EQYAVNVVDQPGGNKKTLILQ 478
           L  G  NAGK+ L+ S L+    +  APT G        ++Y V + D  GG       +
Sbjct: 3   LTVGLDNAGKTTLV-SALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGAN----FR 57

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
            I               A     +FV DSSD+   +  KE+L E+ +    SG   P L+
Sbjct: 58  GIW----------VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGK--PILV 105

Query: 539 IASKDDLK 546
           +A+K D K
Sbjct: 106 LANKQDKK 113

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 21/128 (16%)

Query: 425 RCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT--------GEQYAVNVVDQPGGNKKT 474
           R  L G  N GKS L+N+    +     +Y  TT        G    + +VD PG     
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPG----- 55

Query: 475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV 534
           LI      +GV+      EA+   D+ + V D+S+  + +  +E+L E+ +L        
Sbjct: 56  LIEGASEGKGVEGFNRFLEAIREADLILLVVDASEGLT-EDDEEILEELEKL-----PKK 109

Query: 535 PCLLIASK 542
           P +L+ +K
Sbjct: 110 PIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G   +GK++L+  F +  F ++Y  T G  +    +  PG    TL + +I  +
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 484 GVK-KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
            +  K+L     +        VYD ++  S++  ++ L  V ++ E+S      +L+ +K
Sbjct: 61  QIGGKMLDK--YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNK 118

Query: 543 DDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
            DL+    +  +  AR  QE  +   I VS K+ D +   F RI  AAE
Sbjct: 119 TDLEHNRQVTAEKHARFAQENDM-ESIFVSAKTGDRVFLCFQRI--AAE 164

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DFYPDRVPVT 62
           G  S      +++++GD G GKSSL+ +  + SV +  P +    ++        R+ +T
Sbjct: 6   GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLT 65

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK---VPII 119
           I DT+     +   +   + A  ++L Y   ++ T + LS  W  E+         V ++
Sbjct: 66  IWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKML 125

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQ---FRE--------IETCVECSATTMIQVPDVF 168
           V G K+D R      S EE M    +    F E        +E C E  A  +++VP + 
Sbjct: 126 V-GNKVD-RESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLL 183

Query: 169 YYAQKAV 175
                AV
Sbjct: 184 EEGSTAV 190

Length = 211

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK 487
           L G QN+GK+ L+N      FSE+  PT G     N+     GN  T+ + ++   G  +
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG----FNMRKVTKGNV-TIKVWDLG--GQPR 56

Query: 488 ILSNKEALA-SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546
             S  E      +  ++V D++D    +  K  L ++  L + S  G+P L++ +K+DL 
Sbjct: 57  FRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDL--LEKPSLEGIPLLVLGNKNDLP 114

Query: 547 P 547
            
Sbjct: 115 G 115

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 22/142 (15%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           ++ RK +Q ER + R L+ G  NAGK+ +L  F     S   +PT             G 
Sbjct: 3   TILRKTKQKEREM-RILMLGLDNAGKTTILKKFNGEDIST-ISPTL------------GF 48

Query: 471 NKKTLILQE----IPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVA 524
           N KTL        I + G +K L +  +    S D  I+V DSSD    +  K  L ++ 
Sbjct: 49  NIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKL- 107

Query: 525 RLGEDSGYGVPCLLIASKDDLK 546
            L E+   G   L+ A+K DL 
Sbjct: 108 -LVEERLAGATLLIFANKQDLP 128

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 25/171 (14%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           R L+ G   AGK+ +L             PT G     NV      N K   + ++   G
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIG----FNVETVEYKNVK-FTVWDV---G 51

Query: 485 VKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
            +  +    K    + D  IFV DSSD    +  K  L ++  L E+   G P L++A+K
Sbjct: 52  GQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKL--LNEEELKGAPLLILANK 109

Query: 543 DDLKPYTMAVQDSARVTQELGIEPP-------IPVSMKSKD-LNNVFSRII 585
            DL    +   +   + + LG+E          P S  + D L+     +I
Sbjct: 110 QDLPGA-LTESE---LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLI 156

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++V+VGD   GK++++   A +  PE  VP V        +    RV +++ DTS S   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-- 130
                     +DAV+L +  ++          W  E+        I++ GCK DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 131 -------HNATSLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLHPTAPL 182
                       +    G  M +    E  +ECSA T+   +  +F  A    ++  +PL
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 40/175 (22%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF------YPD-RVPVTIID 65
            +++++GD G GKSSL++        E+    +  T +  DF          RV + I D
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQ----YKST-IGVDFKTKTIEVDGKRVKLQIWD 55

Query: 66  TSSSLENKGKLNEELKR---------ADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIK 115
           T+          +E  R         A   +L Y    + +   L + WL ELR      
Sbjct: 56  TAG---------QERFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYASPN 105

Query: 116 VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           V I++ G K DL  +    S EE      + F E       E SA T   V + F
Sbjct: 106 VVIMLVGNKSDLE-EQRQVSREEA-----EAFAEEHGLPFFETSAKTNTNVEEAF 154

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-E 482
            +C++ G    GK+ LL S+    F E Y PT  + YAV+V    GG +  L L +   +
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV--TVGGKQYLLGLYDTAGQ 58

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E   ++     +    DV +  +   +  S++  KE  V   +   +    VP LLI ++
Sbjct: 59  EDYDRL--RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK---EYAPNVPYLLIGTQ 113

Query: 543 DDLK--PYTMA-----------VQDSARVTQELGIEPPIPVS-MKSKDLNNVFSRIIWA 587
            DL+  P T+A           V+   ++ +E+G    +  S +  K L  VF   I A
Sbjct: 114 IDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 172

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 24/180 (13%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-EE 483
           +C++ G    GK+ LL S+    F   Y PT  + YAV V+   GG   TL L +   +E
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM--IGGEPYTLGLFDTAGQE 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV-EVARLGEDSGYGVPCLLIASK 542
              ++     +    DV +  +      S++  KE  V E+           P LL+ ++
Sbjct: 61  DYDRL--RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQ 114

Query: 543 DDLKPYTMAVQDSARVTQ-------------ELGIEPPIPVS-MKSKDLNNVFSRIIWAA 588
            DL+     ++  A+  Q             +L     +  S +  K L NVF   I AA
Sbjct: 115 IDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 30/184 (16%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRV-----PVTI--I 64
           ++ VVVGD   GK+ L+ +  T   P E VP V        D Y   V     P T+   
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-------DNYAVTVMIGGEPYTLGLF 54

Query: 65  DTSSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123
           DT+   E+  +L      + D  ++ ++    S+   +   W+PE+     K P ++ G 
Sbjct: 55  DTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 113

Query: 124 KLDLRGDHNATSLEEV----MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQ 172
           ++DLR D   +++E++      PI  +      R+++    VECSA T   + +VF  A 
Sbjct: 114 QIDLRDD--PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Query: 173 KAVL 176
            A L
Sbjct: 172 LAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++F+ L+ G    GKS+LL  F +  FS +Y  T G  + +  V+  G   K  I     
Sbjct: 5   HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAG 64

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I S           I VYD ++  S+   K  L E+    E +   V  +L+ +
Sbjct: 65  QERFRTITST--YYRGTHGVIVVYDVTNGESFVNVKRWLQEI----EQNCDDVCKVLVGN 118

Query: 542 K-DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRI 584
           K DD +   +  +D+ +   ++GI      + ++ ++  +F+ I
Sbjct: 119 KNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL    +E
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD-GEEVQLNILDTAGQE 59

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
               I  N     S +  + V+  +D  S+    E   ++ R+ ED    VP LL+ +K 
Sbjct: 60  DYAAIRDN--YFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDD--NVPLLLVGNKC 115

Query: 544 DL 545
           DL
Sbjct: 116 DL 117

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 22/177 (12%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPD--RVPVTIIDTSS 68
           +VVV+GD   GK+SL+        P+    V+ PT       D + D   V +++ DT+ 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQ----VYEPTVFENYIHDIFVDGLAVELSLWDTAG 57

Query: 69  SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
             E     +        ++L ++ +   +L  + S WL E+R     V +++   K DLR
Sbjct: 58  QEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLR 117

Query: 129 GDHNATSLEEVMGPIMQQFRE-------IETC--VECSATTMIQVPDVFYYAQKAVL 176
              N    E   G     + E       I  C  +ECSA     V + F  A +  L
Sbjct: 118 EPRN----ERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL 170

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 33/171 (19%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R+V +G  G GK++LI     ++   K    V  +H       +    +V + I+DTS S
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELH---SKEYEVAGVKVTIDILDTSGS 57

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRR--LEIK----VPIIVAGC 123
                     ++  DA  L Y+ +   +   +       LR   LE+K    VPI+V G 
Sbjct: 58  YSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKR-----LREEILEVKEDKFVPIVVVGN 112

Query: 124 KLDLRG-----DHNATSLEEVMGPIMQQFREIETC-VECSATTMIQVPDVF 168
           K+D          +A S  E+         +     VE SA     V +VF
Sbjct: 113 KIDSLAERQVEAADALSTVEL---------DWNNGFVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 11/134 (8%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + LL G  +AGKS LL             PT G  + V ++        +L + ++   G
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEK--HLSLTVWDV--GG 53

Query: 485 VKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            +K+ +  K  L + D  ++V DSSDE     +++ L  +  L  +   GVP +L+A+K 
Sbjct: 54  QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHI--LKNEHIKGVPVVLLANKQ 111

Query: 544 DLKPYTMAVQDSAR 557
           DL P  +  ++  R
Sbjct: 112 DL-PGALTAEEITR 124

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 30/133 (22%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGNKKTL 475
            + G    GKSAL   FL + F   Y P             GEQ ++ + D PG      
Sbjct: 3   AVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPG------ 56

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW---KRTKELLVEVARLGEDSGY 532
             Q+  E+      S + +L   D  + VY  +D  S+    +  +L+ E+ +   +   
Sbjct: 57  --QQQNEDPE----SLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGE--- 107

Query: 533 GVPCLLIASKDDL 545
            +P +L+ +K DL
Sbjct: 108 -IPVILVGNKADL 119

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F++  F E+Y PT  + Y   V      + +   L+ +   
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEI----DGRQCDLEILDTA 57

Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G ++  + +E  + S    + VY  + E S     EL  +V R+ +     VP +L+ +K
Sbjct: 58  GTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSD--NVPMVLVGNK 115

Query: 543 DDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581
            DL+    ++ +D   ++Q+ G  P    S + + +++ VF
Sbjct: 116 ADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 13  VRVVVVGDRGTGKSSL-IAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            +V++VG  G GKS+L +     E V +  P      R       + V + I+DT+   +
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGD 130
                +   +  +  +L ++     + + L+ +    LR + +  VP+++ G K DL  D
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLE-D 119

Query: 131 HNATSLEEVMGPIMQ---QFREIETCVECSATTMIQVPDVFY 169
               S+EE      Q    +      VE SA T   V  VF+
Sbjct: 120 KRQVSVEEAANLAEQWGVNY------VETSAKTRANVDKVFF 155

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 30/170 (17%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           RVVV G  G GKSSL+      +  E  +P +    R           + I DT+ S + 
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK------VPIIVAGCKLD 126
                  + +  A +L Y+   + +L  L   +  EL   EIK      +PI++ G K D
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIY--ELIC-EIKGNNLEKIPIMLVGNKCD 119

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETC--------VECSATTMIQVPDVF 168
                  +   EV         E            +E SA T   V ++F
Sbjct: 120 ------ESPSREV------SSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 427 LLFGPQNAGKSALLNSFL-ERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485
           L+ G  N+GK+ ++N        S+N  PT G  + V         K  L        G 
Sbjct: 3   LVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFK-----KGNLSFTAFDMSGQ 55

Query: 486 KKILSNKEALA-SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
            K     E    +    IFV DSSD       K+ L  +    +     +P L  A+K D
Sbjct: 56  GKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMD 115

Query: 545 LKPYTMAVQDSARVTQELGIE 565
           L         + ++TQ L +E
Sbjct: 116 LP----DALTAVKITQLLCLE 132

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR---VPVTIIDTSSS 69
           ++VV++GD   GK+SL+         + V  V         FY  +     ++I DT+  
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGA------FYLKQWGPYNISIWDTAGR 54

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
            +  G  +   + A AV+LTY  +   +L  L   +L             V G KLDL  
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 130 DHNATSLEEVMGP 142
           +      E+  G 
Sbjct: 115 EGALAGQEKDAGD 127

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN--VVDQPGGNKKTLILQEIP 481
           +R +L G    GKS+L N F    + ++    +G+        VD   G + TL++ +  
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVD---GEEATLVVYDHW 57

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYGVPCLLI 539
           E+     L +   +   D  + VY  +D  S+++  EL +++  AR  ED    +P +L+
Sbjct: 58  EQEDGMWLED-SCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAED----IPIILV 112

Query: 540 ASKDDL 545
            +K DL
Sbjct: 113 GNKSDL 118

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVP---PVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
           + +++GD G GKS L+     +      P    V   TR+  +    ++ + I DT+   
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI-IEVNGQKIKLQIWDTAGQE 62

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRG 129
             +       + A   ++ Y   ++ST + LSS WL + R L      I + G K DL  
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEA 121

Query: 130 DHNATSLEEVMGPIMQQFREIE--TCVECSATTMIQVPDVFYYAQKAV 175
             + T  E        QF +      +ECSA T   V D F    K +
Sbjct: 122 QRDVTYEEAK------QFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 37/169 (21%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTT-----------GEQYAVNVVDQ 467
           R   + ++ G  N GKS+LLN+   R  +   + A TT           G    V ++D 
Sbjct: 1   REGIKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLGG--IPVRLIDT 58

Query: 468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
            G  +      EI + G+++    +EA+   D+ + V D+S+         L  E   + 
Sbjct: 59  AGLRETE---DEIEKIGIER---AREAIEEADLVLLVVDASE--------GLDEEDLEIL 104

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
           E      P +++ +K DL          A    EL  +P I +S K+ +
Sbjct: 105 ELP-AKKPVIVVLNKSDLLS-------DAEGISELNGKPIIAISAKTGE 145

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP--EEG 484
           ++ G  ++GK++L          +    T+ E  A        G   TLI  + P   + 
Sbjct: 7   IIAGLCDSGKTSLFTLLTTGTVKKTV--TSQEPSAAYKYMLHKGFSFTLI--DFPGHVKL 62

Query: 485 VKKILSNKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            +K+L   +  +S    +FV DS+        T E L E+  + E    G+  L+  +K 
Sbjct: 63  RQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQ 122

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNV 580
           +      A     ++ Q L  E       +SK L+ +
Sbjct: 123 ES---FTARPPK-KIKQALEKEINTIRERRSKALSGL 155

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 34/166 (20%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
           ++ ++ G    GKSAL   F++  F + Y PT  + Y   + VD      +  +L+ +  
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDC-----QQCMLEILDT 56

Query: 483 EGVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
            G ++  + ++  + +      VY  + + S+   ++L  ++ R+ +     VP +L+ +
Sbjct: 57  AGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTE--DVPMILVGN 114

Query: 542 KDDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRII 585
           K DL+    ++ ++   + ++ G  P +  S KSK +++ +F  ++
Sbjct: 115 KCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLV 160

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 24/166 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +VVV+G  G GKS+L     + +  EK  P         DFY      D  P    I+DT
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPT------IEDFYRKEIEVDSSPSVLEILDT 56

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCK 124
           + + +     +  +K     ++ Y+   Q T   +      +  ++  E KVPII+ G K
Sbjct: 57  AGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYE-KVPIILVGNK 115

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           +DL  +   +S E       +   E   C  +E SA +   V ++F
Sbjct: 116 VDLESEREVSSAEG------RALAEEWGCPFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 44/184 (23%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT----------- 456
            +  + K    R   + ++ G  N GKS+LLN+ L  +R    + A TT           
Sbjct: 206 ATAKQGKIL--REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN 263

Query: 457 GEQYAVNVVDQPGGNKKTLILQE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYS 512
           G    V +VD  G       ++E    +   G+++    K+A+   D+ +FV D+S    
Sbjct: 264 G--IPVRLVDTAG-------IRETDDVVERIGIER---AKKAIEEADLVLFVLDASQP-- 309

Query: 513 WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572
             +    L+E+           P +++ +K DL        +        G    I +S 
Sbjct: 310 LDKEDLALIELLPK------KKPIIVVLNKADLVS----KIELESEKLANGD-AIISISA 358

Query: 573 KSKD 576
           K+ +
Sbjct: 359 KTGE 362

Length = 454

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 26/168 (15%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIID 65
           ++++++GD G GKSSL+     ++  E      + T +  DF          +V + I D
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDED----LSST-IGVDFKVKTVTVDGKKVKLAIWD 55

Query: 66  TSSSLENKGKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAG 122
           T+   E    L     R A  V+L Y   ++ T   L   WL EL           ++ G
Sbjct: 56  TAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVG 113

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
            K+D           EV     Q+F        +E SA T I V   F
Sbjct: 114 NKIDKEN-------REVTREEGQKFARKHNMLFIETSAKTRIGVQQAF 154

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTL-ILQ----- 478
           R +  G    GK+AL+  FL   F   +  T  E ++        G K T+ IL      
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYE--VAGVKVTIDILDTSGSY 58

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
             P          K ++ + D    VY   D  S++  K L  E+  + ED    VP ++
Sbjct: 59  SFPA-------MRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDK--FVPIVV 109

Query: 539 IASKDDLKPYTMAVQDSARVTQEL 562
           + +K D           A  T EL
Sbjct: 110 VGNKIDSLAERQVEAADALSTVEL 133

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
           GK+ L+N F +  F +NY  T G  + +   +  G      +     +E  K I S    
Sbjct: 12  GKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYR 71

Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMA 551
            A     I V+D +D  S + T++ L +  +  E+    V   L+ +K DL     Y + 
Sbjct: 72  GAQ--AIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLSSPAQYALM 127

Query: 552 VQDSARVTQELGIEPPIPVSMKSKDLNNVFSRI 584
            QD+ ++ +E+  E     ++  +++ + F R+
Sbjct: 128 EQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	670
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	100.0
COG1160	444	Predicted GTPases [General function prediction onl	100.0
PRK03003	472	GTP-binding protein Der; Reviewed	100.0
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	100.0
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	100.0
PRK00093	435	GTP-binding protein Der; Reviewed	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.97
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.97
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.96
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.96
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.96
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.96
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.96
KOG0394	210	consensus Ras-related GTPase [General function pre	99.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.95
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.95
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.95
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.95
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.95
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
KOG0394	210	consensus Ras-related GTPase [General function pre	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.95
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.94
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.94
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.94
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.94
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.94
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.94
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.94
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.94
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.94
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.93
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.93
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.93
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.93
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.93
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.93
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.93
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.93
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.93
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.93
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
PTZ00369	189	Ras-like protein; Provisional	99.93
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.93
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.93
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.93
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.92
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.92
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.92
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.92
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.92
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.92
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.92
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.92
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.92
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.92
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.92
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.92
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.92
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.92
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.92
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.92
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.92
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.92
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.92
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.92
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.92
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.92
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.92
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.92
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.92
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.92
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.92
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.92
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.92
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.92
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.92
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.92
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.92
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.92
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.92
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.92
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.92
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.92
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.92
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.92
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.91
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.91
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.91
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.91
PTZ00369	189	Ras-like protein; Provisional	99.91
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.91
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.91
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.91
PLN03110	216	Rab GTPase; Provisional	99.91
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.91
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.91
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.91
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.91
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.91
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.91
PF08356	89	EF_assoc_2: EF hand associated; InterPro: IPR01356	99.91
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.91
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.91
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.91
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.91
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.91
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.91
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.91
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.91
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.91
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.91
PLN03110	216	Rab GTPase; Provisional	99.91
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.91
PLN03118	211	Rab family protein; Provisional	99.91
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.91
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.91
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.91
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.91
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.91
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.91
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.9
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.9
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.9
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.9
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.9
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.9
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.9
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.9
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.9
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.9
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.9
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.9
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.9
PLN03108	210	Rab family protein; Provisional	99.9
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.9
PLN00223	181	ADP-ribosylation factor; Provisional	99.9
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.9
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.9
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.9
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.9
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.9
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.9
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.9
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.9
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.9
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.9
PLN03108	210	Rab family protein; Provisional	99.9
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.89
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.89
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.89
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.89
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.89
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.89
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.89
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.89
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.89
PTZ00133	182	ADP-ribosylation factor; Provisional	99.89
PLN03118	211	Rab family protein; Provisional	99.89
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.89
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.89
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.89
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.89
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.88
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.88
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.88
KOG0395	196	consensus Ras-related GTPase [General function pre	99.88
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.88
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.88
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.88
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.88
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.88
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.88
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.87
KOG0395	196	consensus Ras-related GTPase [General function pre	99.87
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.87
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.87
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.87
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.87
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.87
PLN00223	181	ADP-ribosylation factor; Provisional	99.87
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.87
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.87
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.87
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.87
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.87
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.87
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.87
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.86
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.86
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.86
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.86
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.86
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.86
PTZ00133	182	ADP-ribosylation factor; Provisional	99.86
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.86
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.86
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.86
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.86
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.85
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.85
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.85
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.85
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.85
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.85
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.85
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.85
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.85
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.84
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.84
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.84
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.83
PRK15494	339	era GTPase Era; Provisional	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.83
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.83
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.83
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.82
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.82
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.82
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.82
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.82
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.81
PLN00023	334	GTP-binding protein; Provisional	99.81
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.81
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.81
COG1159	298	Era GTPase [General function prediction only]	99.81
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.81
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.81
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.81
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.81
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.81
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.81
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.81
PLN00023	334	GTP-binding protein; Provisional	99.81
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.8
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.8
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.8
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.8
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.79
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.79
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.79
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
COG1100	219	GTPase SAR1 and related small G proteins [General	99.79
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.79
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.79
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.78
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.78
PRK15494	339	era GTPase Era; Provisional	99.78
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.78
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.78
PRK12299	335	obgE GTPase CgtA; Reviewed	99.78
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.78
PRK04213	201	GTP-binding protein; Provisional	99.77
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.77
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.77
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.77
cd00881	189	GTP_translation_factor GTP translation factor fami	99.77
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.77
COG1160	444	Predicted GTPases [General function prediction onl	99.77
PRK11058	426	GTPase HflX; Provisional	99.77
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.76
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.76
PTZ00099	176	rab6; Provisional	99.76
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.76
COG3596	296	Predicted GTPase [General function prediction only	99.76
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.76
PRK00089	292	era GTPase Era; Reviewed	99.76
PRK03003	472	GTP-binding protein Der; Reviewed	99.76
PRK00089	292	era GTPase Era; Reviewed	99.76
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.76
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.76
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.75
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.75
PRK12298	390	obgE GTPase CgtA; Reviewed	99.75
PTZ00099	176	rab6; Provisional	99.75
PRK12298	390	obgE GTPase CgtA; Reviewed	99.75
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.75
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.74
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.74
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.74
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.74
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.74
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.73
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.73
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.73
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.73
COG1100	219	GTPase SAR1 and related small G proteins [General	99.73
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.73
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.72
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.72
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.72
PRK12297	424	obgE GTPase CgtA; Reviewed	99.72
cd00881	189	GTP_translation_factor GTP translation factor fami	99.72
PRK04213	201	GTP-binding protein; Provisional	99.72
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.72
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.71
PRK11058	426	GTPase HflX; Provisional	99.71
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.71
PRK12296	500	obgE GTPase CgtA; Reviewed	99.71
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.7
PRK12297	424	obgE GTPase CgtA; Reviewed	99.7
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.7
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.7
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.7
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.7
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.7
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.69
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.69
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.68
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.68
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.68
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.68
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.68
CHL00189	742	infB translation initiation factor 2; Provisional	99.68
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.68
PRK05306	787	infB translation initiation factor IF-2; Validated	99.68
KOG1673	205	consensus Ras GTPases [General function prediction	99.68
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.68
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.68
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.68
PRK12296	500	obgE GTPase CgtA; Reviewed	99.68
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.68
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.67
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.67
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.67
PRK00093	435	GTP-binding protein Der; Reviewed	99.67
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.67
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.67
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.66
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.66
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.66
COG2262	411	HflX GTPases [General function prediction only]	99.65
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.65
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.65
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.65
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.64
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.64
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.63
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.63
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.63
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.63
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.63
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.62
COG0218	200	Predicted GTPase [General function prediction only	99.62
KOG1673	205	consensus Ras GTPases [General function prediction	99.62
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.62
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.61
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.61
CHL00189	742	infB translation initiation factor 2; Provisional	99.61
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.61
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.61
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.61
COG0218	200	Predicted GTPase [General function prediction only	99.6
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.6
PRK05306	787	infB translation initiation factor IF-2; Validated	99.6
PRK12317	425	elongation factor 1-alpha; Reviewed	99.59
PRK05433	600	GTP-binding protein LepA; Provisional	99.59
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.59
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.59
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.58
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.58
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.58
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.58
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.58
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.57
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.57
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.57
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.57
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.57
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.57
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.57
PRK10218	607	GTP-binding protein; Provisional	99.57
PRK05433	600	GTP-binding protein LepA; Provisional	99.56
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.56
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.56
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.56
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.56
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.55
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.55
PRK04004	586	translation initiation factor IF-2; Validated	99.55
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.54
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.54
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.54
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.53
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.52
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.52
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.51
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.51
PRK12736	394	elongation factor Tu; Reviewed	99.51
PRK12317	425	elongation factor 1-alpha; Reviewed	99.5
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.5
PRK12735	396	elongation factor Tu; Reviewed	99.49
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.49
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.49
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.48
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.48
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.48
PRK00007	693	elongation factor G; Reviewed	99.48
COG1084	346	Predicted GTPase [General function prediction only	99.48
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.48
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.48
COG2262	411	HflX GTPases [General function prediction only]	99.47
PRK04004	586	translation initiation factor IF-2; Validated	99.47
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.47
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.47
PRK13351	687	elongation factor G; Reviewed	99.46
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.46
PRK12736	394	elongation factor Tu; Reviewed	99.46
CHL00071	409	tufA elongation factor Tu	99.46
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.46
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.46
PRK10218	607	GTP-binding protein; Provisional	99.46
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.46
CHL00071	409	tufA elongation factor Tu	99.45
PRK12735	396	elongation factor Tu; Reviewed	99.45
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.45
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.45
PF08355	76	EF_assoc_1: EF hand associated; InterPro: IPR01356	99.44
COG3596	296	Predicted GTPase [General function prediction only	99.44
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.44
COG1163	365	DRG Predicted GTPase [General function prediction	99.43
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.43
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.43
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.43
COG1084	346	Predicted GTPase [General function prediction only	99.43
PRK12739	691	elongation factor G; Reviewed	99.42
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.42
PRK00049	396	elongation factor Tu; Reviewed	99.42
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.41
COG2229	187	Predicted GTPase [General function prediction only	99.41
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.41
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.41
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.4
PLN03127	447	Elongation factor Tu; Provisional	99.4
PRK12289	352	GTPase RsgA; Reviewed	99.4
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.39
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.39
PLN03126	478	Elongation factor Tu; Provisional	99.39
COG0536	369	Obg Predicted GTPase [General function prediction	99.38
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.38
PLN03126	478	Elongation factor Tu; Provisional	99.38
PRK09866	741	hypothetical protein; Provisional	99.38
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.37
PRK09866	741	hypothetical protein; Provisional	99.37
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.36
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.36
COG0536	369	Obg Predicted GTPase [General function prediction	99.36
PRK00049	396	elongation factor Tu; Reviewed	99.35
PLN00043	447	elongation factor 1-alpha; Provisional	99.35
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.35
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.35
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.35
PRK12288	347	GTPase RsgA; Reviewed	99.34
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.34
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.34
PRK09602	396	translation-associated GTPase; Reviewed	99.34
PLN03127	447	Elongation factor Tu; Provisional	99.33
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.33

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=100.00  E-value=8e-92  Score=724.47  Aligned_cols=614  Identities=49%  Similarity=0.806  Sum_probs=552.8

Q ss_pred             CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      |+....++.++|+++|+.||||||||-+++..+|++..|+......++.++..+.+...|+||+..++........++.|
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA   80 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA   80 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence            34567788999999999999999999999999999999999999999999999999999999997776666778899999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      |++.+||+++++.+++.+..+|++.+++..   .++||||||||+|+...... +.+..+..++.+|.++..+++|||++
T Consensus        81 ~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~  159 (625)
T KOG1707|consen   81 DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALT  159 (625)
T ss_pred             CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhh
Confidence            999999999999999999999999999876   68999999999999877655 45556899999999999999999999


Q ss_pred             CCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHH
Q 005908          161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR  240 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~  240 (670)
                      -.++.++|+.+.+++++|..|+|+.+.+++++.|.++|.|||.++|.++|++|++.|+|.+|.+||+.++...+++.++.
T Consensus       160 ~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~  239 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKN  239 (625)
T ss_pred             hhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHH
Q 005908          241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG  320 (670)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~  320 (670)
                      ++++..|.|+...++|+.|||.|+.+|+++||+||+|++||+|||+|+|+|.++|+|..+.++|+|++|||+.|++||..
T Consensus       240 vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~  319 (625)
T KOG1707|consen  240 VVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVD  319 (625)
T ss_pred             HHHhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999548999999999999999999999


Q ss_pred             hhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCC-
Q 005908          321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD-  399 (670)
Q Consensus       321 ~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~-  399 (670)
                      +|.+||.|+||.|+++|+..+|+++|..||....++...+.+..|+++++||+++|.++|++|+..++++|.|+||..+ 
T Consensus       320 ~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~  399 (625)
T KOG1707|consen  320 VFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDA  399 (625)
T ss_pred             HHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccc
Confidence            9999999999999999999999999999999999999988899999999999999999999999999999999999986 


Q ss_pred             --hHHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEE
Q 005908          400 --PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL  477 (670)
Q Consensus       400 --~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~  477 (670)
                        +.+++.++++++.+++.+...++.+++.++|+.++|||.|++.|+|+.+...+.+++...+.++.+... +..+++++
T Consensus       400 ~~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL  478 (625)
T KOG1707|consen  400 GSQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLIL  478 (625)
T ss_pred             cccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEE
Confidence              899999999999999889999999999999999999999999999999888666788888999999999 67777888


Q ss_pred             ecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHH
Q 005908          478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSA  556 (670)
Q Consensus       478 d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~  556 (670)
                      .+.|......+ ....  ..||+++++||.+++.+|..+...+..-...   .  ..|+++|++|+|+.+..+. .....
T Consensus       479 ~ei~~~~~~~l-~~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~--~~Pc~~va~K~dlDe~~Q~~~iqpd  550 (625)
T KOG1707|consen  479 REIGEDDQDFL-TSKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---Y--KIPCLMVATKADLDEVPQRYSIQPD  550 (625)
T ss_pred             eecCccccccc-cCcc--ceeeeEEEecccCCchHHHHHHHHHHHhhhc---c--CCceEEEeeccccchhhhccCCChH
Confidence            88776432222 1222  7899999999999999998887765543322   1  6999999999999875533 33448


Q ss_pred             HHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHH
Q 005908          557 RVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTW  635 (670)
Q Consensus       557 ~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (670)
                      ++++++++++.+.+|.++. . .++|..|...+..|+  +++.......     ...+.+.....+ .++..+++.+|..
T Consensus       551 e~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph--~~~~~~~~~~-----~~~~~l~~~~~g-~~~~~g~~~~~~~  621 (625)
T KOG1707|consen  551 EFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH--IPRIEEEKSS-----LQNRLLMAVSGG-AVAVAGLALYKLY  621 (625)
T ss_pred             HHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC--ccccccccch-----hhHHHHHHHHHH-HHHHhhHHHHhhh
Confidence            9999999999999999966 7 899999999999998  4444443333     455555566666 7777777777765


Q ss_pred             H
Q 005908          636 T  636 (670)
Q Consensus       636 ~  636 (670)
                      +
T Consensus       622 ~  622 (625)
T KOG1707|consen  622 K  622 (625)
T ss_pred             h
Confidence            4

>COG1160 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=6.4e-42  Score=350.41  Aligned_cols=329  Identities=20%  Similarity=0.190  Sum_probs=246.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch---------hhhHHHhc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELK   81 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~   81 (670)
                      ..|+|||+||||||||+|||++.+  ++++.|+++.. ++.....+.+..|.++||+|.+...         .+...++.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRD-r~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRD-RIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccC-CccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            679999999999999999999998  56667875433 3566677778889999999987432         22347889


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +||++|||+|....-+-.+  +.+.+.+++.  ++|+|||+||+|....     .....+.+...++   .++.+||.||
T Consensus        83 eADvilfvVD~~~Git~~D--~~ia~~Lr~~--~kpviLvvNK~D~~~~-----e~~~~efyslG~g---~~~~ISA~Hg  150 (444)
T COG1160          83 EADVILFVVDGREGITPAD--EEIAKILRRS--KKPVILVVNKIDNLKA-----EELAYEFYSLGFG---EPVPISAEHG  150 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEEcccCchh-----hhhHHHHHhcCCC---CceEeehhhc
Confidence            9999999999776555444  4588888855  7999999999997632     2233344445554   6999999999


Q ss_pred             CCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV  241 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~  241 (670)
                      .|+.+|++.+.+.+. +...                                                            
T Consensus       151 ~Gi~dLld~v~~~l~-~~e~------------------------------------------------------------  169 (444)
T COG1160         151 RGIGDLLDAVLELLP-PDEE------------------------------------------------------------  169 (444)
T ss_pred             cCHHHHHHHHHhhcC-Cccc------------------------------------------------------------
Confidence            999999998877643 1100                                                            


Q ss_pred             HhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 005908          242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI  321 (670)
Q Consensus       242 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~  321 (670)
                                                                            .+                        
T Consensus       170 ------------------------------------------------------~~------------------------  171 (444)
T COG1160         170 ------------------------------------------------------EE------------------------  171 (444)
T ss_pred             ------------------------------------------------------cc------------------------
Confidence                                                                  00                        


Q ss_pred             hhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChH
Q 005908          322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA  401 (670)
Q Consensus       322 f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~  401 (670)
                                                            .                                         
T Consensus       172 --------------------------------------~-----------------------------------------  172 (444)
T COG1160         172 --------------------------------------E-----------------------------------------  172 (444)
T ss_pred             --------------------------------------c-----------------------------------------
Confidence                                                  0                                         


Q ss_pred             HHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEec
Q 005908          402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQE  479 (670)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~  479 (670)
                                      .....++||+|+|+||||||||+|+|+++++..+++  +||++.+.. .+..+  ..++.++||
T Consensus       173 ----------------~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~-~~e~~--~~~~~liDT  233 (444)
T COG1160         173 ----------------EEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDI-EFERD--GRKYVLIDT  233 (444)
T ss_pred             ----------------cccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceee-eEEEC--CeEEEEEEC
Confidence                            000245899999999999999999999999999887  577765553 33443  356677899


Q ss_pred             CCh---------hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc
Q 005908          480 IPE---------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (670)
Q Consensus       480 ~g~---------~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~  550 (670)
                      +|-         -++.++.++...+..+|++++|+|++.+.+ ++..+....+.+.      ++++++|.||||+.++..
T Consensus       234 AGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-~qD~~ia~~i~~~------g~~~vIvvNKWDl~~~~~  306 (444)
T COG1160         234 AGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-EQDLRIAGLIEEA------GRGIVIVVNKWDLVEEDE  306 (444)
T ss_pred             CCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-HHHHHHHHHHHHc------CCCeEEEEEccccCCchh
Confidence            983         133345568889999999999999999976 4445555555554      799999999999987521


Q ss_pred             c-----HHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCC
Q 005908          551 A-----VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPET  598 (670)
Q Consensus       551 ~-----~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~  598 (670)
                      .     .++++.....+++.|++++||++| ++.++|+.+.+....+..+++++
T Consensus       307 ~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts  360 (444)
T COG1160         307 ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTS  360 (444)
T ss_pred             hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHH
Confidence            1     334444445566778999999999 99999999999998877776554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=4.1e-39  Score=351.62  Aligned_cols=329  Identities=21%  Similarity=0.175  Sum_probs=228.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHHh
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEEL   80 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~   80 (670)
                      ...+|+|+|++|||||||+|+|++..+.  ...+++. ...........+..+.+|||||++.        +...+..++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT-~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVT-RDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCC-EeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            3478999999999999999999988743  2344422 1223334445667899999999863        223345688


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      +.||++|+|||+++..++...  .|...++..  ++|+++|+||+|+.....     +..+.+...++   .+++|||++
T Consensus       116 ~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~~~-----~~~~~~~~g~~---~~~~iSA~~  183 (472)
T PRK03003        116 RTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERGEA-----DAAALWSLGLG---EPHPVSALH  183 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCccch-----hhHHHHhcCCC---CeEEEEcCC
Confidence            999999999999988776542  477777765  899999999999864311     11222233333   468999999


Q ss_pred             CCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHH
Q 005908          161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR  240 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~  240 (670)
                      |.||+++|+.+.+.+......                                                           
T Consensus       184 g~gi~eL~~~i~~~l~~~~~~-----------------------------------------------------------  204 (472)
T PRK03003        184 GRGVGDLLDAVLAALPEVPRV-----------------------------------------------------------  204 (472)
T ss_pred             CCCcHHHHHHHHhhccccccc-----------------------------------------------------------
Confidence            999999999887653210000                                                           


Q ss_pred             HHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHH
Q 005908          241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG  320 (670)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~  320 (670)
                                                                             .+                       
T Consensus       205 -------------------------------------------------------~~-----------------------  206 (472)
T PRK03003        205 -------------------------------------------------------GS-----------------------  206 (472)
T ss_pred             -------------------------------------------------------cc-----------------------
Confidence                                                                   00                       


Q ss_pred             hhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCCh
Q 005908          321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDP  400 (670)
Q Consensus       321 ~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~  400 (670)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (472)
T PRK03003        207 --------------------------------------------------------------------------------  206 (472)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEec
Q 005908          401 AAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQE  479 (670)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~  479 (670)
                                        .....++|+|+|++|||||||+|+|++.++..++. ++++.+.....+...|  ..+.+|||
T Consensus       207 ------------------~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DT  266 (472)
T PRK03003        207 ------------------ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDT  266 (472)
T ss_pred             ------------------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEEC
Confidence                              00123799999999999999999999988754433 3333333334455553  34568999


Q ss_pred             CCh----------hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          480 IPE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       480 ~g~----------~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      +|.          +.+..+ ++..+++.+|++++|+|++++.+++... ++..+...      ++|+|+|+||+|+.+..
T Consensus       267 aG~~~~~~~~~~~e~~~~~-~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~------~~piIiV~NK~Dl~~~~  338 (472)
T PRK03003        267 AGLRRRVKQASGHEYYASL-RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA------GRALVLAFNKWDLVDED  338 (472)
T ss_pred             CCccccccccchHHHHHHH-HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChh
Confidence            994          333222 2445789999999999999998877664 44444432      79999999999997632


Q ss_pred             ccHHHHHHHHHH---hCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCC
Q 005908          550 MAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPE  597 (670)
Q Consensus       550 ~~~~~~~~~~~~---~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~  597 (670)
                      ......+++.+.   ....|++++||++| |++++|+.+.+.+.....++++
T Consensus       339 ~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t  390 (472)
T PRK03003        339 RRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPT  390 (472)
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCH
Confidence            211111222222   33457999999999 9999999999999887776654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=100.00  E-value=4.3e-36  Score=327.04  Aligned_cols=326  Identities=17%  Similarity=0.187  Sum_probs=224.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHHhccC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKRA   83 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~a   83 (670)
                      +|+|+|++|||||||+|+|++.+.  ..+.+++.... ........+..+.+|||||...        +......+++.+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~-~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDR-KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCc-eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            589999999999999999998773  34455533222 2334445677899999999742        334455788999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      |++++|+|.++..+....  .+...+++.  ++|+++|+||+|+......      ... ...++ +.+++++||++|.|
T Consensus        80 d~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~~------~~~-~~~lg-~~~~~~vSa~~g~g  147 (429)
T TIGR03594        80 DVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDAV------AAE-FYSLG-FGEPIPISAEHGRG  147 (429)
T ss_pred             CEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCccccc------HHH-HHhcC-CCCeEEEeCCcCCC
Confidence            999999999876555443  367777765  7999999999998754322      111 22333 23699999999999


Q ss_pred             chHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHh
Q 005908          164 VPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQ  243 (670)
Q Consensus       164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~  243 (670)
                      +.++++.+.+.+.....                                                               
T Consensus       148 v~~ll~~i~~~l~~~~~---------------------------------------------------------------  164 (429)
T TIGR03594       148 IGDLLDAILELLPEEEE---------------------------------------------------------------  164 (429)
T ss_pred             hHHHHHHHHHhcCcccc---------------------------------------------------------------
Confidence            99999877654311000                                                               


Q ss_pred             hhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhh
Q 005908          244 EKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFG  323 (670)
Q Consensus       244 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~  323 (670)
                                                                           +                          
T Consensus       165 -----------------------------------------------------~--------------------------  165 (429)
T TIGR03594       165 -----------------------------------------------------E--------------------------  165 (429)
T ss_pred             -----------------------------------------------------c--------------------------
Confidence                                                                 0                          


Q ss_pred             hhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChHHH
Q 005908          324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAA  403 (670)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~~~  403 (670)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (429)
T TIGR03594       166 --------------------------------------------------------------------------------  165 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCC
Q 005908          404 LRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIP  481 (670)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g  481 (670)
                                   .......++|+++|.+|||||||+|+|++.++...++  +|+.+... ..+...|  ..+.+||++|
T Consensus       166 -------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~-~~~~~~~--~~~~liDT~G  229 (429)
T TIGR03594       166 -------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSID-IPFERNG--KKYLLIDTAG  229 (429)
T ss_pred             -------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEe-EEEEECC--cEEEEEECCC
Confidence                         0001234799999999999999999999987655443  34443332 3344443  3677899999


Q ss_pred             hhhHh---------hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-
Q 005908          482 EEGVK---------KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-  551 (670)
Q Consensus       482 ~~~~~---------~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-  551 (670)
                      .....         ...+...+++.+|++++|+|++++.+.+.. .+...+...      ++|+++|+||+|+.+.... 
T Consensus       230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~~~  302 (429)
T TIGR03594       230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA------GKALVIVVNKWDLVKDEKTR  302 (429)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc------CCcEEEEEECcccCCCHHHH
Confidence            53221         122345678999999999999998776654 344444433      6999999999999832222 


Q ss_pred             HHHHHHHHHHh---CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCC
Q 005908          552 VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPE  597 (670)
Q Consensus       552 ~~~~~~~~~~~---~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~  597 (670)
                      .+....+...+   +..+++++||++| |++++|+++.+.+..+..+.++
T Consensus       303 ~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t  352 (429)
T TIGR03594       303 EEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIST  352 (429)
T ss_pred             HHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence            22222333333   3457999999999 9999999999998776665543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=100.00  E-value=1.7e-35  Score=337.72  Aligned_cols=333  Identities=21%  Similarity=0.177  Sum_probs=226.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~   79 (670)
                      ....+|+|+|++|||||||+|+|++.+.  ....+++. ..+........+..+.+|||||++.        +......+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT-~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVT-RDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCee-EEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3457899999999999999999998764  33344432 1223334445677899999999763        22334567


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++.+|++|+|+|+++..+.  ....|...++..  ++|+++|+||+|+.....     .....+...++   .++++||+
T Consensus       352 ~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~~-----~~~~~~~lg~~---~~~~iSA~  419 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTS--TDERIVRMLRRA--GKPVVLAVNKIDDQASEY-----DAAEFWKLGLG---EPYPISAM  419 (712)
T ss_pred             HHhCCEEEEEEECCCCCCH--HHHHHHHHHHhc--CCCEEEEEECcccccchh-----hHHHHHHcCCC---CeEEEECC
Confidence            8999999999998764333  233477888765  899999999999864211     11222223333   46899999


Q ss_pred             cCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVK  239 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~  239 (670)
                      +|.||.++++.+.+.+......                                                          
T Consensus       420 ~g~GI~eLl~~i~~~l~~~~~~----------------------------------------------------------  441 (712)
T PRK09518        420 HGRGVGDLLDEALDSLKVAEKT----------------------------------------------------------  441 (712)
T ss_pred             CCCCchHHHHHHHHhccccccc----------------------------------------------------------
Confidence            9999999999887653210000                                                          


Q ss_pred             HHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHH
Q 005908          240 RVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLR  319 (670)
Q Consensus       240 ~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~  319 (670)
                                                                           ...++                      
T Consensus       442 -----------------------------------------------------~~a~~----------------------  446 (712)
T PRK09518        442 -----------------------------------------------------SGFLT----------------------  446 (712)
T ss_pred             -----------------------------------------------------ccccC----------------------
Confidence                                                                 00000                      


Q ss_pred             HhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCC
Q 005908          320 GIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD  399 (670)
Q Consensus       320 ~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~  399 (670)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (712)
T PRK09518        447 --------------------------------------------------------------------------------  446 (712)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEE
Q 005908          400 PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLIL  477 (670)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~  477 (670)
                                          ....++|+++|++|||||||+|+|++.++..++.  +|+.+.+ ...+...|.  .+.+|
T Consensus       447 --------------------~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~-~~~~~~~~~--~~~li  503 (712)
T PRK09518        447 --------------------PSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPV-DEIVEIDGE--DWLFI  503 (712)
T ss_pred             --------------------CCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcc-eeEEEECCC--EEEEE
Confidence                                0123699999999999999999999998654333  4554433 344555533  45589


Q ss_pred             ecCChh---------hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908          478 QEIPEE---------GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (670)
Q Consensus       478 d~~g~~---------~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~  548 (670)
                      ||+|..         ++....+...+++.+|++++|+|++++.+++... ++..+...      ++|+++|+||+|+.+.
T Consensus       504 DTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~------~~piIiV~NK~DL~~~  576 (712)
T PRK09518        504 DTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA------GRALVLVFNKWDLMDE  576 (712)
T ss_pred             ECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEEchhcCCh
Confidence            999942         2222222456689999999999999998877654 44444433      6999999999999763


Q ss_pred             cccHHHHHHHHHH---hCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCC
Q 005908          549 TMAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPET  598 (670)
Q Consensus       549 ~~~~~~~~~~~~~---~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~  598 (670)
                      .......+.+...   ....+++++||++| |++++++.+.+.+..+..++++.
T Consensus       577 ~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~  630 (712)
T PRK09518        577 FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTG  630 (712)
T ss_pred             hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChH
Confidence            2211111222222   23446899999999 99999999999998877766553

>PRK00093 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=4.1e-35  Score=319.60  Aligned_cols=325  Identities=16%  Similarity=0.148  Sum_probs=220.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHHhcc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKR   82 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~   82 (670)
                      .+|+|+|++|||||||+|+|++.+.  ....+++.... ........+..+.+|||||+..        .......+++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR-IYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc-eEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            5899999999999999999998873  44455433222 2223444568899999999986        22234467899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      +|++|+|+|++++.+..+.  .+...+++.  ++|+++|+||+|+....      .....+ ..++ ...++++||++|.
T Consensus        81 ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~------~~~~~~-~~lg-~~~~~~iSa~~g~  148 (435)
T PRK00093         81 ADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE------ADAYEF-YSLG-LGEPYPISAEHGR  148 (435)
T ss_pred             CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch------hhHHHH-HhcC-CCCCEEEEeeCCC
Confidence            9999999999876554432  255566665  89999999999975421      111222 2333 2258999999999


Q ss_pred             CchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 005908          163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV  242 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l  242 (670)
                      |++++++.+.......                                                                
T Consensus       149 gv~~l~~~I~~~~~~~----------------------------------------------------------------  164 (435)
T PRK00093        149 GIGDLLDAILEELPEE----------------------------------------------------------------  164 (435)
T ss_pred             CHHHHHHHHHhhCCcc----------------------------------------------------------------
Confidence            9999998776510000                                                                


Q ss_pred             hhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 005908          243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF  322 (670)
Q Consensus       243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f  322 (670)
                                                                        +  ..                         
T Consensus       165 --------------------------------------------------~--~~-------------------------  167 (435)
T PRK00093        165 --------------------------------------------------E--EE-------------------------  167 (435)
T ss_pred             --------------------------------------------------c--cc-------------------------
Confidence                                                              0  00                         


Q ss_pred             hhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChHH
Q 005908          323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAA  402 (670)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~~  402 (670)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (435)
T PRK00093        168 --------------------------------------------------------------------------------  167 (435)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecC
Q 005908          403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEI  480 (670)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~  480 (670)
                                     ......++|+|+|.+|||||||+|+|++.+...++.  +|+.+... ..+...  ...+.++|++
T Consensus       168 ---------------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~-~~~~~~--~~~~~lvDT~  229 (435)
T PRK00093        168 ---------------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSID-TPFERD--GQKYTLIDTA  229 (435)
T ss_pred             ---------------cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEE-EEEEEC--CeeEEEEECC
Confidence                           000124899999999999999999999987655443  34433322 233333  3456789999


Q ss_pred             Chhh---------HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc
Q 005908          481 PEEG---------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA  551 (670)
Q Consensus       481 g~~~---------~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~  551 (670)
                      |...         .....++..+++.+|++|+|+|++++.+.+.. .+...+...      ++|+++|+||+|+.+....
T Consensus       230 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~------~~~~ivv~NK~Dl~~~~~~  302 (435)
T PRK00093        230 GIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALEA------GRALVIVVNKWDLVDEKTM  302 (435)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc------CCcEEEEEECccCCCHHHH
Confidence            9421         11222345678999999999999998776544 344444433      6999999999999853322


Q ss_pred             HHHHHHHHHH---hCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908          552 VQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP  596 (670)
Q Consensus       552 ~~~~~~~~~~---~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~  596 (670)
                      .+..+++...   .+..|++++||++| |++++++.+.+.+..+..+++
T Consensus       303 ~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~  351 (435)
T PRK00093        303 EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRIS  351 (435)
T ss_pred             HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence            2233333333   23457999999999 999999999998876665544

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-31  Score=240.12  Aligned_cols=170  Identities=25%  Similarity=0.408  Sum_probs=158.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .++-+||+|+|++|||||+|+.||.++.|...+..|++.++..+.+.+.|...++.+|||+||++|+++  +.++|++||
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti--t~syYR~ah   83 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH   83 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh--hHhhccCCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      +||+|||+++.+||+.+..|+.++.++...   +.|.++||||+|+.+.+.. .+++++|+..+++++++++|||++ ||
T Consensus        84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~---~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKRWIQEIDRYASE---NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV  160 (205)
T ss_pred             eEEEEEEcccHHHhhhHHHHHHHhhhhccC---CCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence            999999999999999999999999999876   5899999999999986655 888899999999988999999999 99


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 005908          578 NNVFSRIIWAAEHPHLN  594 (670)
Q Consensus       578 ~~l~~~l~~~~~~~~~~  594 (670)
                      ++.|..|...+......
T Consensus       161 e~~F~~la~~lk~~~~~  177 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRKGL  177 (205)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999988655443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-29  Score=228.50  Aligned_cols=166  Identities=23%  Similarity=0.355  Sum_probs=153.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|..|||||||+-||..+.|.....+|++..+..+.+.+++...++.||||+|+++|.++  .+.||++|+++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl--apMYyRgA~AA   81 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL--APMYYRGANAA   81 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc--ccceecCCcEE
Confidence            4589999999999999999999999999988899999999999999988889999999999999999  89999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      |+|||+++.+||..++.|++++.+..++   ++-+.+||||+||.+ +++..++++.+++..++. ++++||||| ||++
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~~---~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQASP---NIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENVNE  157 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCCC---CeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCHHH
Confidence            9999999999999999999999988763   577888999999998 455599999999999988 999999999 9999


Q ss_pred             HHHHHHHHHhCCCC
Q 005908          580 VFSRIIWAAEHPHL  593 (670)
Q Consensus       580 l~~~l~~~~~~~~~  593 (670)
                      +|..|.+.+.....
T Consensus       158 if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  158 IFQAIAEKLPCSDP  171 (200)
T ss_pred             HHHHHHHhccCccc
Confidence            99999999875443

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-29  Score=227.99  Aligned_cols=169  Identities=18%  Similarity=0.290  Sum_probs=147.4

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      .....+||+|+|++|||||+|+.||..+.|.+.+-.+.+...  ....++++.++++||||+||++|+.++..+|++||+
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            445679999999999999999999999999998666555544  567777889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      ||+|||+++.+||+.+.. |+.+++++. .++|.+|||||+|+.+.+.+ + .+..+.++..++. ..++|+|||++.||
T Consensus        85 ii~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v-~-~~~a~~fa~~~~~-~~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEKRVV-S-TEEAQEFADELGI-PIFLETSAKDSTNV  160 (205)
T ss_pred             EEEEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhheec-C-HHHHHHHHHhcCC-cceeecccCCccCH
Confidence            999999999999999995 999999876 46799999999999999888 4 4555888888874 23999999999999


Q ss_pred             hHHHHHHHHHHcCCCC
Q 005908          165 PDVFYYAQKAVLHPTA  180 (670)
Q Consensus       165 ~~l~~~i~~~~~~~~~  180 (670)
                      ++.|..+...+.....
T Consensus       161 e~~F~~la~~lk~~~~  176 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRKG  176 (205)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999988765443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.6e-29  Score=227.89  Aligned_cols=166  Identities=21%  Similarity=0.285  Sum_probs=143.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+||+++|+.|||||||+-|+..++|.+. .|++..-+. +.+.++...+++.||||+|+++|.++.++|+|+|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4679999999999999999999999999997 555444433 55667777899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|||+++.+||..+++ |.++|++.. +++-+.|||||+||.+.+.+ .. +....++...+.  .|+|+|||+|.||++
T Consensus        83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~R~V-~~-~ea~~yAe~~gl--l~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLERREV-EF-EEAQAYAESQGL--LFFETSAKTGENVNE  157 (200)
T ss_pred             EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhcccc-cH-HHHHHHHHhcCC--EEEEEecccccCHHH
Confidence            9999999999999995 999998765 45667789999999998888 44 456788888774  699999999999999


Q ss_pred             HHHHHHHHHcCCCC
Q 005908          167 VFYYAQKAVLHPTA  180 (670)
Q Consensus       167 l~~~i~~~~~~~~~  180 (670)
                      +|..|.+.++....
T Consensus       158 if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  158 IFQAIAEKLPCSDP  171 (200)
T ss_pred             HHHHHHHhccCccc
Confidence            99999999876543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.5e-29  Score=228.90  Aligned_cols=166  Identities=20%  Similarity=0.360  Sum_probs=156.4

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      ...+.+||+++|++|||||+++.+|..+.|...+..|++.++..+.+.++|...++.+|||+|++++..+  +..|++.|
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti--~~sYyrgA   85 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGA   85 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH--HHHHHhhc
Confidence            4567899999999999999999999999999999899999999999999998899999999999999999  99999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      +++++|||+++..||+++..|++.+.++.+.   +.|++|||||+|+..+++ ..+..+.+|.++|+. ++++|||+| |
T Consensus        86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~N  161 (207)
T KOG0078|consen   86 MGILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNFN  161 (207)
T ss_pred             CeeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCCC
Confidence            9999999999999999999999999998876   699999999999998554 489999999999998 999999999 9


Q ss_pred             hHHHHHHHHHHHhC
Q 005908          577 LNNVFSRIIWAAEH  590 (670)
Q Consensus       577 v~~l~~~l~~~~~~  590 (670)
                      |++.|..+++.+..
T Consensus       162 I~eaF~~La~~i~~  175 (207)
T KOG0078|consen  162 IEEAFLSLARDILQ  175 (207)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-28  Score=218.82  Aligned_cols=163  Identities=19%  Similarity=0.318  Sum_probs=152.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+|++++|+.|||||+|+.+|+...|.++++.|++.++-.+.+.+++...++.+|||+|++.++++  +..+|+.|.+
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv--~~syYr~a~G   81 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV--TRSYYRGAAG   81 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH--HHHHhccCcc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999  8999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||+++++||..+..|+.++.++...   +..++++|||+||..++.. .++.+.||+++++. ++++||+++ ||+
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~---NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~VE  157 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNE---NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAENVE  157 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCC---CcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhhHH
Confidence            99999999999999999999999988643   7999999999999976544 89999999999998 899999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|......+.
T Consensus       158 EaF~nta~~Iy  168 (216)
T KOG0098|consen  158 EAFINTAKEIY  168 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99998887763

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-28  Score=220.05  Aligned_cols=167  Identities=22%  Similarity=0.364  Sum_probs=154.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      -+.+|++++|+.+|||||||+||+.+.|...|.+|++.++..+.+.+.|....+.+|||+|||+|+++  ...|++++.+
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl--ipsY~Rds~v   97 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSSV   97 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh--hhhhccCCeE
Confidence            34599999999999999999999999999999999999999999999988899999999999999999  8999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||+++..||++..+|+..+......+  +.-+++||||.||.++++. .++.+..+++++.. |+++||+.| ||.
T Consensus        98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NVk  174 (221)
T KOG0094|consen   98 AVIVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENVK  174 (221)
T ss_pred             EEEEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCHH
Confidence            999999999999999999999999887654  5778899999999987655 78888999999986 999999999 999


Q ss_pred             HHHHHHHHHHhCCC
Q 005908          579 NVFSRIIWAAEHPH  592 (670)
Q Consensus       579 ~l~~~l~~~~~~~~  592 (670)
                      ++|..|...++...
T Consensus       175 ~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  175 QLFRRIAAALPGME  188 (221)
T ss_pred             HHHHHHHHhccCcc
Confidence            99999988886543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.4e-28  Score=213.11  Aligned_cols=165  Identities=19%  Similarity=0.301  Sum_probs=153.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||.++|.+|||||||+-+|+...|.+..+.|++.++.++.+.++|...++-||||+|+++|+.+  +..|+++|.+
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtL--TpSyyRgaqG   86 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTL--TPSYYRGAQG   86 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhcc--CHhHhccCce
Confidence            45699999999999999999999999999998888999999999999999999999999999999999  9999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++.+++|..+..|++++..+....  ++-.++|+||+|...++ +..++...|++++++. ++++|||+. ||+
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~--diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~V~  163 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNP--DIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTRENVQ  163 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCc--cHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhccHH
Confidence            999999999999999999999999998765  67789999999988544 4488999999999998 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ..|+++++.+.+
T Consensus       164 ~~FeelveKIi~  175 (209)
T KOG0080|consen  164 CCFEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3e-28  Score=224.46  Aligned_cols=172  Identities=16%  Similarity=0.256  Sum_probs=152.1

Q ss_pred             CCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHH
Q 005908            2 PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEE   79 (670)
Q Consensus         2 ~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   79 (670)
                      +.+........+||+++|++|||||+|+.+|..+.|...+..+.+...  ..+..++..+++++|||+|+++|..++..|
T Consensus         2 ~~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sY   81 (207)
T KOG0078|consen    2 SAMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAY   81 (207)
T ss_pred             CccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHH
Confidence            445555777889999999999999999999999999888665555444  455666778999999999999999999999


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +++|+++++|||+++..||+++.. |++.++++.+ ++|++|||||+|+...+++  ..+..+.++.++|.  .|+|+||
T Consensus        82 yrgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G~--~F~EtSA  156 (207)
T KOG0078|consen   82 YRGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYGI--KFFETSA  156 (207)
T ss_pred             HhhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhCC--eEEEccc
Confidence            999999999999999999999996 9999998765 8999999999999998888  56778999999984  7999999


Q ss_pred             ccCCCchHHHHHHHHHHcCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~  178 (670)
                      |+|.||.+.|..+.+.++..
T Consensus       157 k~~~NI~eaF~~La~~i~~k  176 (207)
T KOG0078|consen  157 KTNFNIEEAFLSLARDILQK  176 (207)
T ss_pred             cCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999988754

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.7e-28  Score=212.54  Aligned_cols=168  Identities=21%  Similarity=0.289  Sum_probs=147.5

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      ......+||+++|.+|||||||+.+|+.+.|.+..|.+.+...  ..+.+++..+++.||||+|+++|+.++++|+++|.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            4455679999999999999999999999999998777565544  56677888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      ++|+|||++.+++|.++. .|++++..+.  +++..++||||+|...++.+  ..++...++++++.  -|+||||++.+
T Consensus        86 GiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R~V--~reEG~kfAr~h~~--LFiE~SAkt~~  160 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESERVV--DREEGLKFARKHRC--LFIECSAKTRE  160 (209)
T ss_pred             eeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcccc--cHHHHHHHHHhhCc--EEEEcchhhhc
Confidence            999999999999999996 6999998874  56777899999998887777  45566788899886  49999999999


Q ss_pred             CchHHHHHHHHHHcCCC
Q 005908          163 QVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~~  179 (670)
                      ||+..|++++.++..-+
T Consensus       161 ~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  161 NVQCCFEELVEKIIETP  177 (209)
T ss_pred             cHHHHHHHHHHHHhcCc
Confidence            99999999999887543

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-28  Score=219.76  Aligned_cols=167  Identities=19%  Similarity=0.236  Sum_probs=144.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+++|+.+|||||||+|++.+.|..++..+.+...  ..+.+.+..+++++|||+||++|..+.+.|+++++++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            44569999999999999999999999999999777666655  4455667789999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-C-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-I-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |+|||+++..||++.. +|++.+++.. . +.-++|||||.||.+.+++ . .++.+..+++++.  .|+++||+.|.||
T Consensus        99 viVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv-s-~eEg~~kAkel~a--~f~etsak~g~NV  173 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV-S-IEEGERKAKELNA--EFIETSAKAGENV  173 (221)
T ss_pred             EEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchhhh-h-HHHHHHHHHHhCc--EEEEecccCCCCH
Confidence            9999999999999998 5999997753 3 4677899999999999988 4 4455688888885  6999999999999


Q ss_pred             hHHHHHHHHHHcCCCC
Q 005908          165 PDVFYYAQKAVLHPTA  180 (670)
Q Consensus       165 ~~l~~~i~~~~~~~~~  180 (670)
                      .++|..|...++....
T Consensus       174 k~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  174 KQLFRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHHHHhccCccc
Confidence            9999998887765543

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=4e-28  Score=216.09  Aligned_cols=168  Identities=18%  Similarity=0.324  Sum_probs=153.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+|+|++|||||||+|++++.+|...+..|++.++..+.+.+++....+.||||+|+++|.++  ....++++|+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsL--g~aFYRgaDc   84 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSL--GVAFYRGADC   84 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhc--ccceecCCce
Confidence            56799999999999999999999999999999999999999999999977788999999999999999  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCC-CCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSG-YGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~-~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +++|||++++.||+.+..|.+++..+..... ..-|+||+|||+|+..   +.+....+++||+..+-.|||++|||.+ 
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999988776432 4689999999999976   4556899999999998878999999999 


Q ss_pred             ChHHHHHHHHHHHhC
Q 005908          576 DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~  590 (670)
                      ||++.|+.+.+.+..
T Consensus       165 NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  165 NVDEAFEEIARRALA  179 (210)
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999998764

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=3.8e-28  Score=207.31  Aligned_cols=162  Identities=26%  Similarity=0.409  Sum_probs=152.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +-++.+|+|+||||||||+.+|....|...|..|++.++.+++++++|...++.|||++|+++|+.+  +..+++..+++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti--tstyyrgthgv   84 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI--TSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH--HHHHccCCceE
Confidence            3478899999999999999999999999999899999999999999999999999999999999999  88999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||+++++||.+..+|++++...+.    ..|-++||||.|..+++.. .++++.++..+++. .|++|||.+ |++.
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd----sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE~  159 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD----SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVEA  159 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc----cccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccchH
Confidence            999999999999999999999999887    5899999999999987766 88999999999998 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|.-|.++..+
T Consensus       160 mF~cit~qvl~  170 (198)
T KOG0079|consen  160 MFHCITKQVLQ  170 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.95  E-value=1.8e-27  Score=226.57  Aligned_cols=164  Identities=26%  Similarity=0.380  Sum_probs=138.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ...+||+++|++|||||||+++|+.+.|...+.++. ........++...+.+.+|||+|++++..+.+.+++++|++|+
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            457899999999999999999999999887744433 3333445566678899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      |||++++.||+++...|.+.+++..++.|++|||||+|+.+.            +.+  ..+..+.++++++. .+|+||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~E~  159 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIEC  159 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCC--CHHHHHHHHHHcCC-CEEEEC
Confidence            999999999999855799999888789999999999999642            223  34567888888873 379999


Q ss_pred             CcccCCC-chHHHHHHHHHHc
Q 005908          157 SATTMIQ-VPDVFYYAQKAVL  176 (670)
Q Consensus       157 SA~~~~g-i~~l~~~i~~~~~  176 (670)
                      ||++|.| |+++|+.+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.2e-28  Score=214.46  Aligned_cols=164  Identities=19%  Similarity=0.253  Sum_probs=146.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+|++++|+.|||||+|+.||+.++|.+..+.+.+...  ..+.++...++++||||+|++.|.+.+..||+.|.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            44679999999999999999999999999888666555544  4556778899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||+++++||..+.. |+..++.+ .++..++|+|||+||...+.+  .+++.+.++++.+-  .++++||+++.||+
T Consensus        83 lLVydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~ehgL--ifmETSakt~~~VE  157 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFAREHGL--IFMETSAKTAENVE  157 (216)
T ss_pred             EEEEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHHcCc--eeehhhhhhhhhHH
Confidence            99999999999999996 99999887 489999999999999998877  66778999999874  58999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      |.|......++.
T Consensus       158 EaF~nta~~Iy~  169 (216)
T KOG0098|consen  158 EAFINTAKEIYR  169 (216)
T ss_pred             HHHHHHHHHHHH
Confidence            999988887754

>cd04133 Rop_like Rop subfamily

Probab=99.95  E-value=2.2e-27  Score=224.53  Aligned_cols=163  Identities=27%  Similarity=0.425  Sum_probs=136.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+++|++|||||||+.+++.+.|...+ |++.........++...+++.+|||+|++++..+...+++++|++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            69999999999999999999999998764 44433333444555667999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC----------CccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH----------NATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +++++||+++...|+..++...++.|++|||||+|+.+.+          .+  ..+....+++.++. .+++||||++|
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~E~SAk~~  158 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPI--TTAQGEELRKQIGA-AAYIECSSKTQ  158 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCC--CHHHHHHHHHHcCC-CEEEECCCCcc
Confidence            9999999998546999998777789999999999997643          23  34556778877763 36999999999


Q ss_pred             CCchHHHHHHHHHHcCC
Q 005908          162 IQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~  178 (670)
                      .||+++|+.+++.+..+
T Consensus       159 ~nV~~~F~~~~~~~~~~  175 (176)
T cd04133         159 QNVKAVFDAAIKVVLQP  175 (176)
T ss_pred             cCHHHHHHHHHHHHhcC
Confidence            99999999999987544

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01875 RhoG RhoG subfamily

Probab=99.95  E-value=6e-27  Score=225.79  Aligned_cols=168  Identities=26%  Similarity=0.389  Sum_probs=137.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ..+||+++|++|||||||+++++.+.|...+.++.+. ......++...+.+.+|||+|++++..+++.+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            4689999999999999999999999987764443333 333344566678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ||++++.||+++...|...++...+++|++|||||+|+.+....          ....+..+.+++.++. .++++|||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA-VKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-cEEEEeCCC
Confidence            99999999999976799888776678999999999999754210          0123445667777663 379999999


Q ss_pred             cCCCchHHHHHHHHHHcCCC
Q 005908          160 TMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~  179 (670)
                      +|.||+++|+.+++.+..+.
T Consensus       161 ~g~~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             CCCCHHHHHHHHHHHHhccc
Confidence            99999999999999887654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=99.95  E-value=5.5e-27  Score=222.91  Aligned_cols=162  Identities=28%  Similarity=0.385  Sum_probs=135.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++||+++|++|||||||+++|+++.|...+.++. ........++...+.+.+|||+|++.+..+.+.+++++|++|+||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            4799999999999999999999999877744433 333334455667789999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      |+++++||+++...|+..+++..++.|++|||||+|+.+.            +.+  ..+....++++++. .+|+||||
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v--~~~e~~~~a~~~~~-~~~~E~SA  157 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPV--SYEQGCAIAKQLGA-EIYLECSA  157 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCC--CHHHHHHHHHHhCC-CEEEECcc
Confidence            9999999999755799999888889999999999999642            223  34567888888873 36999999


Q ss_pred             ccCCC-chHHHHHHHHHHc
Q 005908          159 TTMIQ-VPDVFYYAQKAVL  176 (670)
Q Consensus       159 ~~~~g-i~~l~~~i~~~~~  176 (670)
                      ++|+| |+++|+.+++..+
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=1.1e-26  Score=222.18  Aligned_cols=164  Identities=18%  Similarity=0.209  Sum_probs=138.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+||+++|++|||||||+++|.++.|...++++.+...  ..+.++...+.+.+|||+|++++..++..+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            3569999999999999999999999888766544333222  23444556789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|||++++.||+++. .|++.+....++.|+||||||+|+...+.+ . .+.++.+++..+  .++++|||++|.||+++
T Consensus        84 lVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~~~v-~-~~~~~~~a~~~~--~~~~e~SAk~g~~V~~~  158 (189)
T cd04121          84 LVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFKRQV-A-TEQAQAYAERNG--MTFFEVSPLCNFNITES  158 (189)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhccCC-C-HHHHHHHHHHcC--CEEEEecCCCCCCHHHH
Confidence            999999999999997 599999887789999999999999877666 3 455678887776  37999999999999999


Q ss_pred             HHHHHHHHcCC
Q 005908          168 FYYAQKAVLHP  178 (670)
Q Consensus       168 ~~~i~~~~~~~  178 (670)
                      |+++.+.+...
T Consensus       159 F~~l~~~i~~~  169 (189)
T cd04121         159 FTELARIVLMR  169 (189)
T ss_pred             HHHHHHHHHHh
Confidence            99999987643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=1.8e-27  Score=211.94  Aligned_cols=170  Identities=21%  Similarity=0.287  Sum_probs=143.6

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      +...+.-+||+|+|++|||||||+|++++++|...+..+.+...  +.+.++...+.++||||+|+++|.++.-.++++|
T Consensus         3 ~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga   82 (210)
T KOG0394|consen    3 SLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA   82 (210)
T ss_pred             CcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC
Confidence            34456679999999999999999999999998887554444433  5556667788999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhc-C----CCCCEEEEEeCCCCCCC--CCccchhhhhhHHHHHhccCCeEEEe
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRL-E----IKVPIIVAGCKLDLRGD--HNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~----~~~pvilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      |..++|||++++.||+.+.. |.+++-.. .    ...|+||+|||+|+...  +++  .......++...+.+ +|||+
T Consensus        83 DcCvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V--S~~~Aq~WC~s~gni-pyfEt  158 (210)
T KOG0394|consen   83 DCCVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV--SEKKAQTWCKSKGNI-PYFET  158 (210)
T ss_pred             ceEEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee--eHHHHHHHHHhcCCc-eeEEe
Confidence            99999999999999999986 98887443 2    26899999999999763  455  456678899998875 89999


Q ss_pred             CcccCCCchHHHHHHHHHHcCCC
Q 005908          157 SATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      |||.+.||.+.|+.+.+.++..+
T Consensus       159 SAK~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  159 SAKEATNVDEAFEEIARRALANE  181 (210)
T ss_pred             cccccccHHHHHHHHHHHHHhcc
Confidence            99999999999999999887654

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=2.3e-26  Score=220.07  Aligned_cols=171  Identities=18%  Similarity=0.286  Sum_probs=148.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+++|..|||||||+++|.++.+...+.++.+.++....+..++....+.+||++|++.+..+  +..+++++|+
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l--~~~~~~~ad~   81 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI--FRSYSRGAQG   81 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhcCCCE
Confidence            35699999999999999999999998887777777777777777888866778889999999999988  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.||+.+..|+.++.....    +.|+||||||+|+...+ ...++++.+++..++. ++++||++| ||+
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~~----~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V~  156 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHAP----GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNIT  156 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCHH
Confidence            9999999999999999999999977643    69999999999997643 3477899999999876 999999999 999


Q ss_pred             HHHHHHHHHHhCCCCCCCCC
Q 005908          579 NVFSRIIWAAEHPHLNIPET  598 (670)
Q Consensus       579 ~l~~~l~~~~~~~~~~~~~~  598 (670)
                      ++|+++++.+...+.++|..
T Consensus       157 ~~F~~l~~~i~~~~~~~~~~  176 (189)
T cd04121         157 ESFTELARIVLMRHGRPPQS  176 (189)
T ss_pred             HHHHHHHHHHHHhcCCCCCC
Confidence            99999999887666555443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.95  E-value=1.6e-26  Score=226.79  Aligned_cols=167  Identities=26%  Similarity=0.327  Sum_probs=139.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ....+||+++|++|||||||+++|+++.|...+ |++.........++...+.+.||||+|++.|..+.+.++++||++|
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            346789999999999999999999999988774 4443344444556677899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEE
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      +|||++++.||+.+...|+..++...++.|+||||||+|+...            +.+  ..+..+.++++++. ..|+|
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~V--s~~e~~~~a~~~~~-~~~~E  166 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPI--SYEQGCALAKQLGA-EVYLE  166 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcC--CHHHHHHHHHHcCC-CEEEE
Confidence            9999999999998645699999887778999999999999642            334  34567888888873 26999


Q ss_pred             eCcccCC-CchHHHHHHHHHHcCC
Q 005908          156 CSATTMI-QVPDVFYYAQKAVLHP  178 (670)
Q Consensus       156 ~SA~~~~-gi~~l~~~i~~~~~~~  178 (670)
                      |||++|. ||+++|+.+++.++..
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHh
Confidence            9999998 8999999999987654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.5e-27  Score=213.29  Aligned_cols=165  Identities=21%  Similarity=0.336  Sum_probs=153.8

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      ...+.+||+++|+++||||-|+.||...+|...+.+|++..+....+.++|...+..||||+|+++|+++  +..||+.|
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi--tSaYYrgA   87 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI--TSAYYRGA   87 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccc--cchhhccc
Confidence            3578899999999999999999999999999999999999999999999998899999999999999999  89999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      .++++|||++.+.+|+.+.+|+.+++.+...   ++++++||||+||.+.+. ..++++.+++..++. ++++||..+ |
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~tN  163 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDATN  163 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEeccccccc
Confidence            9999999999999999999999999998765   699999999999998544 488999999999988 999999999 9


Q ss_pred             hHHHHHHHHHHHh
Q 005908          577 LNNVFSRIIWAAE  589 (670)
Q Consensus       577 v~~l~~~l~~~~~  589 (670)
                      |++.|+.++..+-
T Consensus       164 Ve~aF~~~l~~I~  176 (222)
T KOG0087|consen  164 VEKAFERVLTEIY  176 (222)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888763

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=1.9e-26  Score=222.69  Aligned_cols=162  Identities=19%  Similarity=0.315  Sum_probs=134.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +.|+++|++|||||||+++|+.+.|...++++.+...  ....+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            4699999999999999999999999887555443322  33455556799999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |+++++||+++. .|+..++... .+.|++|||||+|+...+.+  ..+..+.++++... ..+++|||++|.||+++|+
T Consensus        81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~a~~~~~-~~~~etSAktg~gV~e~F~  156 (202)
T cd04120          81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI--SRQQGEKFAQQITG-MRFCEASAKDNFNVDEIFL  156 (202)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHH
Confidence            999999999998 4999887653 57999999999999876665  33445666666533 3699999999999999999


Q ss_pred             HHHHHHcCC
Q 005908          170 YAQKAVLHP  178 (670)
Q Consensus       170 ~i~~~~~~~  178 (670)
                      ++++.+...
T Consensus       157 ~l~~~~~~~  165 (202)
T cd04120         157 KLVDDILKK  165 (202)
T ss_pred             HHHHHHHHh
Confidence            999887643

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9e-27  Score=198.79  Aligned_cols=165  Identities=19%  Similarity=0.349  Sum_probs=153.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      -.+.+|+.|+|.+.||||||+.++.+..|.+.+..|.+.++.++++--...+.++.+|||+|+++++.+  +..++++++
T Consensus        18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti--TTayyRgam   95 (193)
T KOG0093|consen   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI--TTAYYRGAM   95 (193)
T ss_pred             ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH--HHHHhhccc
Confidence            467799999999999999999999999999988889999999998877767889999999999999999  899999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++|++||+++.+||..+..|...+..+...   +.|+|+|+||||+..++.. .+..+.+++++|+. +|++|||.+ ||
T Consensus        96 gfiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinV  171 (193)
T KOG0093|consen   96 GFILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINV  171 (193)
T ss_pred             eEEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccH
Confidence            999999999999999999999999988765   6999999999999987766 88899999999997 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +.+|+.+...+..
T Consensus       172 k~~Fe~lv~~Ic~  184 (193)
T KOG0093|consen  172 KQVFERLVDIICD  184 (193)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988864

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.94  E-value=2e-26  Score=218.84  Aligned_cols=160  Identities=23%  Similarity=0.355  Sum_probs=131.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+++|++|||||||+++|+.+.|...+.++.+ .......+....+.+.||||+|++++...+..+++++|++|+|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            7999999999999999999999999766444333 333334455556889999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++++++|+++.+.|...++...+++|++|||||+|+.+.            +.+  ..+....++++++. ..+++|||+
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v--~~~~~~~~a~~~~~-~~~~e~SA~  158 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI--TPETGEKLARDLKA-VKYVECSAL  158 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCc--CHHHHHHHHHHhCC-cEEEEecCC
Confidence            999999999976799999877778999999999998654            222  23445667766653 379999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQKAV  175 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~  175 (670)
                      +|.||+++|+.+++.+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04133 Rop_like Rop subfamily

Probab=99.94  E-value=3.2e-26  Score=216.67  Aligned_cols=161  Identities=19%  Similarity=0.382  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+.+++.+.|...+.+|.+..+. ..+..+|....+.+||++|++++..+  ...+++++|++|+
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il   78 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRL--RPLSYRGADVFVL   78 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCcccccc--chhhcCCCcEEEE
Confidence            69999999999999999999999998888888887664 44566766778899999999999988  7789999999999


Q ss_pred             EEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----------ccHHHHHHHHHHhCCCCcEEee
Q 005908          504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      |||++++.||+.+ ..|+..+.....    +.|++|||||+|+.+.+           ...++++.+++.++..++++||
T Consensus        79 vyd~~~~~Sf~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  154 (176)
T cd04133          79 AFSLISRASYENVLKKWVPELRHYAP----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS  154 (176)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            9999999999998 689999877643    69999999999996642           4478889999999876699999


Q ss_pred             cccC-ChHHHHHHHHHHHhCC
Q 005908          572 MKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~~~~~  591 (670)
                      |++| ||+++|+.+++.+.+|
T Consensus       155 Ak~~~nV~~~F~~~~~~~~~~  175 (176)
T cd04133         155 SKTQQNVKAVFDAAIKVVLQP  175 (176)
T ss_pred             CCcccCHHHHHHHHHHHHhcC
Confidence            9999 9999999999987543

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.94  E-value=5.1e-26  Score=222.23  Aligned_cols=169  Identities=26%  Similarity=0.362  Sum_probs=139.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++||+|||++|||||||+++|.++.|...+ |++.........++...+.+.||||+|++.|..+.+.+++++|++|+||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            479999999999999999999999988774 4444444444556667889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC----------ccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      |++++++|+.+...|...++...++.|+||||||+|+..+..          .-...+....+++.++. .+|+||||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~-~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA-VSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC-CEEEEcCCCc
Confidence            999999999997789988888788999999999999965311          00123456778888874 3799999999


Q ss_pred             CCC-chHHHHHHHHHHcCCCCC
Q 005908          161 MIQ-VPDVFYYAQKAVLHPTAP  181 (670)
Q Consensus       161 ~~g-i~~l~~~i~~~~~~~~~~  181 (670)
                      +.| |+++|+.++...+.+..+
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC
Confidence            985 999999999988765543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=6.7e-26  Score=218.91  Aligned_cols=161  Identities=17%  Similarity=0.355  Sum_probs=141.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      ++|+++|.+|||||||+++|..+.|...+.+|++.++..+.+.++|....+.+||++|++++..+  +..+++++|++|+
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l--~~~y~~~ad~iIl   78 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAKGIIL   78 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH--HHHHhcCCCEEEE
Confidence            47999999999999999999999998888888888888888888876788899999999999998  7889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHh-CCCCcEEeecccC-ChHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQEL-GIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~~~vSA~~g-~v~~l  580 (670)
                      |||++++.||+.+..|+..+......   +.|+++|+||+|+...+ ....+.+++++++ ++. +++|||++| ||+++
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~~~~---~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etSAktg~gV~e~  154 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEASAKDNFNVDEI  154 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEecCCCCCCHHHH
Confidence            99999999999999999988766432   69999999999997543 3467778888876 554 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      |+++++.+..
T Consensus       155 F~~l~~~~~~  164 (202)
T cd04120         155 FLKLVDDILK  164 (202)
T ss_pred             HHHHHHHHHH
Confidence            9999988753

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=7.4e-27  Score=199.43  Aligned_cols=161  Identities=23%  Similarity=0.269  Sum_probs=142.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      -+|.+|+|++|||||||+.+|..+.|...+.++.+...  ..+.+.+..+++.||||+|++.|..++..++++.+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            46789999999999999999999999888666555544  4566778899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ||+++.+||.+.. +|++.++..++..|-+|||||+|..+.+.+  ..+....++.+.+  ..+||+|||.+.|++.+|.
T Consensus        88 YDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~RrvV--~t~dAr~~A~~mg--ie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   88 YDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPERRVV--DTEDARAFALQMG--IELFETSAKENENVEAMFH  162 (198)
T ss_pred             EECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccceee--ehHHHHHHHHhcC--chheehhhhhcccchHHHH
Confidence            9999999999998 599999999999999999999999887766  4555688888887  3799999999999999999


Q ss_pred             HHHHHHcC
Q 005908          170 YAQKAVLH  177 (670)
Q Consensus       170 ~i~~~~~~  177 (670)
                      -|.+.++.
T Consensus       163 cit~qvl~  170 (198)
T KOG0079|consen  163 CITKQVLQ  170 (198)
T ss_pred             HHHHHHHH
Confidence            99887753

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=2.4e-26  Score=199.85  Aligned_cols=165  Identities=22%  Similarity=0.346  Sum_probs=147.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+.++++++|++-||||||+..|..+.+..-++||.+.++..+++.+. |...++.+|||+|+++++++  +..|++++-
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsi--tksyyrnsv   83 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI--TKSYYRNSV   83 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH--HHHHhhccc
Confidence            467999999999999999999999999999999999999887777765 56678999999999999999  999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++|+.||+.+..|.++...+..... .+-+.+||.|+||...++. .++++.+++.+++. ++++||++| ||
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~-k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NV  161 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPD-KVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNV  161 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCC-eeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcH
Confidence            99999999999999999999999877665220 3445789999999976554 89999999999998 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      ++.|+.+.+.+.
T Consensus       162 eEAF~mlaqeIf  173 (213)
T KOG0091|consen  162 EEAFDMLAQEIF  173 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.94  E-value=9.6e-26  Score=214.75  Aligned_cols=162  Identities=19%  Similarity=0.296  Sum_probs=141.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+++|.+|||||||+++|..+.+...+.||.+..+. ..+.+++....+.+||++|++++..+  ...+++++|+
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~--~~~~~~~ad~   79 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA   79 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhh--hhhhcCCCCE
Confidence            35689999999999999999999999998888888876664 45667767778999999999999888  7789999999


Q ss_pred             EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.||+.+ ..|+..+.+..+    +.|++|||||+||.+             .....++++++++++++.+
T Consensus        80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  155 (182)
T cd04172          80 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT  155 (182)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence            9999999999999997 799999987653    689999999999864             1245788999999999756


Q ss_pred             cEEeecccC-C-hHHHHHHHHHHHh
Q 005908          567 PIPVSMKSK-D-LNNVFSRIIWAAE  589 (670)
Q Consensus       567 ~~~vSA~~g-~-v~~l~~~l~~~~~  589 (670)
                      |++|||++| | |+++|+.+++.+.
T Consensus       156 ~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         156 YIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             EEECCcCCCCCCHHHHHHHHHHHHh
Confidence            999999999 9 9999999998643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.94  E-value=8.5e-26  Score=214.00  Aligned_cols=162  Identities=17%  Similarity=0.311  Sum_probs=134.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      .+||+++|++|||||||+++++++.|...+.++.+ .......+.+..+.+.+|||||++++..++..+++.+|++|+||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            58999999999999999999999998766444333 33334455566788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |++++.||+.+.+ |...+.+.  .+++|+++|+||+|+.+.+.+ + .+....+++.++  .++++|||++|.||+++|
T Consensus        82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~~f  156 (172)
T cd04141          82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQV-T-TEEGRNLAREFN--CPFFETSAALRHYIDDAF  156 (172)
T ss_pred             ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCcc-C-HHHHHHHHHHhC--CEEEEEecCCCCCHHHHH
Confidence            9999999999985 88877653  357999999999999876655 3 344567777776  379999999999999999


Q ss_pred             HHHHHHHcCC
Q 005908          169 YYAQKAVLHP  178 (670)
Q Consensus       169 ~~i~~~~~~~  178 (670)
                      +++++.+...
T Consensus       157 ~~l~~~~~~~  166 (172)
T cd04141         157 HGLVREIRRK  166 (172)
T ss_pred             HHHHHHHHHh
Confidence            9999887653

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.94  E-value=7.8e-26  Score=225.37  Aligned_cols=222  Identities=17%  Similarity=0.217  Sum_probs=159.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+++|+++.+...+.+|++ ++....+.+.|....+.+||++|++.+..+  ...++..+|++|+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~--~~~~~~~ad~iIl   77 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAM--RRLSILTGDVFIL   77 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHH--HHHHhccCCEEEE
Confidence            4899999999999999999999998877777776 455567777766678889999999888877  6667899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC------CCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGE------DSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~------~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      |||+++++||+.+..|+.++.....      ....++|+|+|+||+|+.. .....+++.+++......+++++||++| 
T Consensus        78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            9999999999999999998876421      0112689999999999975 3334556666655432235999999999 


Q ss_pred             ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 005908          576 DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGR  655 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (670)
                      |++++|+.|++.+..+....|..... ..-++.+.+.    ..+.+         ..+.-      --...++-..+=+|
T Consensus       158 gI~elf~~L~~~~~~p~e~~~~~~~~-~~~~~~~~~~----~~~~~---------~~~~~------~~~~~~~~~~~~~~  217 (247)
T cd04143         158 NLDEMFRALFSLAKLPNEMSPSLHRK-ISVQYGDALH----KKSRG---------GSRKR------KEGDACGAVAPFAR  217 (247)
T ss_pred             CHHHHHHHHHHHhccccccCccccce-eeeeeccccc----ccccc---------ccccc------cCCCcccccccccc
Confidence            99999999999886555433221111 0011111110    00000         00000      12355677778899


Q ss_pred             CCccccccchhhc
Q 005908          656 RTGCLSSLCCKKE  668 (670)
Q Consensus       656 ~~~~~~~~~~~~~  668 (670)
                      ||+.+|||+|+++
T Consensus       218 ~~~~~~~~~~~~~  230 (247)
T cd04143         218 RPSVHSDLRYIRS  230 (247)
T ss_pred             CCCchhhHHHHhc
Confidence            9999999999875

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.94  E-value=1e-25  Score=213.85  Aligned_cols=160  Identities=24%  Similarity=0.349  Sum_probs=131.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      .+||+++|++|||||||+.+++.+.|...+ |+..........++...+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            479999999999999999999999987764 4333232333445556788999999999999898999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      |++++++|+++...|...++...++.|++|||||+|+.+.+            .+  ..+....++++++. .++++|||
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa  157 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLECSA  157 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCC--CHHHHHHHHHHcCC-cEEEEecc
Confidence            99999999999767999887776789999999999996532            12  34455677777764 37999999


Q ss_pred             ccCCCchHHHHHHHHH
Q 005908          159 TTMIQVPDVFYYAQKA  174 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~  174 (670)
                      ++|.||+++|+.+.+.
T Consensus       158 ~~~~~i~~~f~~l~~~  173 (174)
T cd01871         158 LTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cccCCHHHHHHHHHHh
Confidence            9999999999988764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=2.7e-25  Score=209.59  Aligned_cols=165  Identities=53%  Similarity=0.908  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +||+++|++|||||||+++|.++.+....+++.........+....+++.+|||||.+.+...+..+++.+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            48999999999999999999999987766655545555555666788999999999988877778888999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHH
Q 005908           93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~  172 (670)
                      +++.+++.+...|.+.++...+++|+++|+||+|+.+.......++....+...++...++++|||++|.|++++|+.+.
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~  160 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ  160 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence            99999999876799989876678999999999999765432112344445555565444799999999999999999999


Q ss_pred             HHHcC
Q 005908          173 KAVLH  177 (670)
Q Consensus       173 ~~~~~  177 (670)
                      +.+++
T Consensus       161 ~~~~~  165 (166)
T cd01893         161 KAVLH  165 (166)
T ss_pred             HHhcC
Confidence            88765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9e-26  Score=193.75  Aligned_cols=165  Identities=21%  Similarity=0.358  Sum_probs=151.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .++-+|++++|+.|.|||+|+++|+..++...+..|++.++..+++.+.|...++.|||++|+++|+++  ++.|+++|-
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV--tRsYYRGAA   83 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA   83 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH--HHHHhcccc
Confidence            456699999999999999999999999999998899999999999999988899999999999999999  999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      +.++|||+++++||+.+..|+..++...+.   ++-+|+++||.||.+.++. ..++.+|+++..+. +.++||+|| ||
T Consensus        84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~---nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNV  159 (214)
T KOG0086|consen   84 GALLVYDITSRDSFNALTNWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV  159 (214)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHhhCCC---cEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccH
Confidence            999999999999999999999999887765   6889999999999886554 78899999998886 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      ++.|-...+.+..
T Consensus       160 EEaFl~c~~tIl~  172 (214)
T KOG0086|consen  160 EEAFLKCARTILN  172 (214)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888877654

>cd04134 Rho3 Rho3 subfamily

Probab=99.93  E-value=2.2e-25  Score=214.70  Aligned_cols=167  Identities=22%  Similarity=0.269  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      .||+++|++|||||||+++|.++.|...+.++. .........+...+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            389999999999999999999999877643333 3333333344556889999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc----------chhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      ++++.+|+.+...|+..+....++.|++||+||+|+...+...          ...+....++...+. .++++|||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA-LRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEccCCcC
Confidence            9999999998767999998777789999999999997654210          112233455555553 37999999999


Q ss_pred             CCchHHHHHHHHHHcCCCC
Q 005908          162 IQVPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~  180 (670)
                      .||+++|+++.+.++.+..
T Consensus       160 ~~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         160 RGVNEAFTEAARVALNVRP  178 (189)
T ss_pred             CCHHHHHHHHHHHHhcccc
Confidence            9999999999999886554

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.4e-25  Score=191.67  Aligned_cols=163  Identities=21%  Similarity=0.305  Sum_probs=148.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +.-+||+++|..|||||+|+++|..+-|++....|++.++.++++.+.|...++.|||++|+++++++  +..|++.|++
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsi--tqsyyrsaha   82 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI--TQSYYRSAHA   82 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH--HHHHhhhcce
Confidence            45699999999999999999999999999888889999999999999999999999999999999999  9999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++-..||+-+.+|+.++.++...   ..--|+|+||+|+.+++.. .+..++|++...+- ++++||+.. |++
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~---kvlkilvgnk~d~~drrevp~qigeefs~~qdmy-fletsakea~nve  158 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANN---KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY-FLETSAKEADNVE  158 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhc---ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh-hhhhcccchhhHH
Confidence            99999999999999999999999999764   3667899999999987544 66778888886665 899999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      .||..++..+.
T Consensus       159 ~lf~~~a~rli  169 (213)
T KOG0095|consen  159 KLFLDLACRLI  169 (213)
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

>cd04131 Rnd Rnd subfamily

Probab=99.93  E-value=3e-25  Score=211.00  Aligned_cols=158  Identities=18%  Similarity=0.296  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++....+.+||++|++.+..+  ...+++++|++|+
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~~il   78 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNV--RPLCYPDSDAVLI   78 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhc--chhhcCCCCEEEE
Confidence            69999999999999999999999998888888876654 45677767778889999999999887  7788999999999


Q ss_pred             EEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCCCCcEE
Q 005908          504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~~  569 (670)
                      |||++++.||+.+ ..|+..+.+..+    +.|+++||||+||.+             .....++++++++.+++.++++
T Consensus        79 vfdit~~~Sf~~~~~~w~~~i~~~~~----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E  154 (178)
T cd04131          79 CFDISRPETLDSVLKKWRGEIQEFCP----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE  154 (178)
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHCC----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence            9999999999996 799999987753    689999999999964             1244789999999999866999


Q ss_pred             eecccC-C-hHHHHHHHHHHH
Q 005908          570 VSMKSK-D-LNNVFSRIIWAA  588 (670)
Q Consensus       570 vSA~~g-~-v~~l~~~l~~~~  588 (670)
                      +||++| | |+++|..+++..
T Consensus       155 ~SA~~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         155 CSAFTSEKSVRDIFHVATMAC  175 (178)
T ss_pred             CccCcCCcCHHHHHHHHHHHH
Confidence            999999 7 999999999854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.93  E-value=4.1e-25  Score=216.94  Aligned_cols=163  Identities=17%  Similarity=0.267  Sum_probs=142.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|++|||||||+++|+++.|...+.||++..+.. .+.++|....+.+||++|++.|..+  ...+++++|++
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~--~~~~~~~ad~v   88 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDSDAV   88 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHH--HHHHcCCCcEE
Confidence            45899999999999999999999999998888898876653 4677777788999999999999888  78899999999


Q ss_pred             EEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCCCCc
Q 005908          502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGIEPP  567 (670)
Q Consensus       502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~  567 (670)
                      |+|||++++.||+.+ ..|+.++.....    +.|+|+|+||+|+.+             ..+..++++++++++++.+|
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~  164 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYCP----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY  164 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence            999999999999984 799999987653    589999999999864             23447889999999998669


Q ss_pred             EEeecccC--ChHHHHHHHHHHHhCC
Q 005908          568 IPVSMKSK--DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       568 ~~vSA~~g--~v~~l~~~l~~~~~~~  591 (670)
                      ++|||++|  ||+++|+.+++.+.+.
T Consensus       165 ~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         165 LECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            99999998  4999999999987653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=3.6e-25  Score=208.79  Aligned_cols=160  Identities=23%  Similarity=0.329  Sum_probs=132.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+++|++|||||||+++|.+++|....+++.+...  ....+....+++.+|||||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999998877665443332  2334555678899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||++++.+|+.+.. |+..++.. .++.|+++|+||+|+...+.+ . .+....+++..+  .++++|||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~i~e~f  156 (166)
T cd04122          82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQRDV-T-YEEAKQFADENG--LLFLECSAKTGENVEDAF  156 (166)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            99999999999985 88877654 357899999999999876655 3 344566777665  379999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      ..+.+.+.
T Consensus       157 ~~l~~~~~  164 (166)
T cd04122         157 LETAKKIY  164 (166)
T ss_pred             HHHHHHHh
Confidence            99988764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.3e-25  Score=191.80  Aligned_cols=162  Identities=17%  Similarity=0.238  Sum_probs=138.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+|+.|+|+..||||||+.|+.+..|....-.+.+...  +.+--....+++++|||+|++.+..++..++++|+++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            57999999999999999999999999887443333333  2222224568999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||+++.+||..++. |.-.++.+. .+.|+||||||||+.+++.+  ..+....+++++|.  .+||+|||.+.||+++|
T Consensus       101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~eRvi--s~e~g~~l~~~LGf--efFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen  101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSERVI--SHERGRQLADQLGF--EFFETSAKENINVKQVF  175 (193)
T ss_pred             EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccceee--eHHHHHHHHHHhCh--HHhhhcccccccHHHHH
Confidence            99999999999996 999998764 58999999999999988877  55667899999985  79999999999999999


Q ss_pred             HHHHHHHcCC
Q 005908          169 YYAQKAVLHP  178 (670)
Q Consensus       169 ~~i~~~~~~~  178 (670)
                      +.+...+...
T Consensus       176 e~lv~~Ic~k  185 (193)
T KOG0093|consen  176 ERLVDIICDK  185 (193)
T ss_pred             HHHHHHHHHH
Confidence            9988876543

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=8.2e-25  Score=206.31  Aligned_cols=161  Identities=19%  Similarity=0.357  Sum_probs=140.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|.++.+...+.+|++.++....+...+....+.+||++|++++..+  ...+++++|++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~i   79 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV--TRSYYRGAAGAL   79 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEEE
Confidence            489999999999999999999999988887788888887777888866778899999999999887  778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+. ..+++.++++..+++ ++++||++| |++++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e~  155 (166)
T cd04122          80 MVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDA  155 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence            999999999999999999988765432   589999999999976543 367888889888875 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |+.+++.+.
T Consensus       156 f~~l~~~~~  164 (166)
T cd04122         156 FLETAKKIY  164 (166)
T ss_pred             HHHHHHHHh
Confidence            999987764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2e-25  Score=204.27  Aligned_cols=166  Identities=19%  Similarity=0.207  Sum_probs=143.3

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      .....-+||+++|++|||||-|+.|+..+.|..+...+.+...  ....++++.++.+||||+||++|......++++|.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            4556779999999999999999999999999888555444433  45677788899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      ++++|||++.+.+|+++. +|+.+|+.+. ++++++|||||+||.+.+.+  ..+....++...+  ..++++||..+.|
T Consensus        89 GAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~lraV--~te~~k~~Ae~~~--l~f~EtSAl~~tN  163 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHLRAV--PTEDGKAFAEKEG--LFFLETSALDATN  163 (222)
T ss_pred             eeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhcccc--chhhhHhHHHhcC--ceEEEeccccccc
Confidence            999999999999999998 5999999876 68999999999999987776  4455567777665  3699999999999


Q ss_pred             chHHHHHHHHHHcC
Q 005908          164 VPDVFYYAQKAVLH  177 (670)
Q Consensus       164 i~~l~~~i~~~~~~  177 (670)
                      |++.|+.++..++.
T Consensus       164 Ve~aF~~~l~~I~~  177 (222)
T KOG0087|consen  164 VEKAFERVLTEIYK  177 (222)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988887653

>cd04136 Rap_like Rap-like subfamily

Probab=99.93  E-value=4.6e-25  Score=207.27  Aligned_cols=159  Identities=25%  Similarity=0.323  Sum_probs=129.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      .+||+++|++|||||||+++++.+.|...++++.. .......+....+.+.+|||||++++...+..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            37999999999999999999999988776544333 33333445556688999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |++++.+++.+.. |...+...  .+++|+++|+||+|+.+.+.+  ..+....+.+.++  .+++++||++|.||+++|
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04136          81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVF  155 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence            9999999999885 87777653  357999999999999765544  2334456666665  479999999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      +++.+.+
T Consensus       156 ~~l~~~~  162 (163)
T cd04136         156 ADLVRQI  162 (163)
T ss_pred             HHHHHhc
Confidence            9998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=7.5e-25  Score=213.24  Aligned_cols=166  Identities=17%  Similarity=0.285  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      +||+|+|++|||||||+++|+++.+...+.+|.+.++....+..+ |....+.+||++|++.+..+  +..+++++|++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~a~~~i   78 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM--TRVYYRGAVGAI   78 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh--HHHHhCCCCEEE
Confidence            589999999999999999999999888888888888877778877 66778899999999999888  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      +|||++++.+|+.+..|+..+...... ...++|+++|+||+|+.+ .....++++++++..++.+++++||++| |+++
T Consensus        79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence            999999999999999999888654321 112689999999999974 3445778899999998666999999999 9999


Q ss_pred             HHHHHHHHHhCC
Q 005908          580 VFSRIIWAAEHP  591 (670)
Q Consensus       580 l~~~l~~~~~~~  591 (670)
                      +|++|++.+...
T Consensus       159 ~f~~l~~~l~~~  170 (201)
T cd04107         159 AMRFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.93  E-value=1.7e-24  Score=212.88  Aligned_cols=162  Identities=18%  Similarity=0.283  Sum_probs=132.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+||+++|++|||||||+++++.+.|...+.++.+...  .........+++.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            7789999999999999999999999998777555444333  23334455789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|||++++.+++.+.. |+..+++..+++|++|||||+|+... .+ . .+.+ .+....+  .+|++|||++|.||+++
T Consensus        91 lvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~-~~~~-~~~~~~~--~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071         91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-QV-K-AKQV-TFHRKKN--LQYYEISAKSNYNFEKP  163 (219)
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc-cC-C-HHHH-HHHHhcC--CEEEEcCCCCCCCHHHH
Confidence            9999999999999984 99999877778999999999998643 22 1 2222 4444443  37999999999999999


Q ss_pred             HHHHHHHHcCC
Q 005908          168 FYYAQKAVLHP  178 (670)
Q Consensus       168 ~~~i~~~~~~~  178 (670)
                      |+++.+.+...
T Consensus       164 f~~l~~~~~~~  174 (219)
T PLN03071        164 FLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHcC
Confidence            99999988644

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=1.1e-24  Score=206.37  Aligned_cols=162  Identities=16%  Similarity=0.307  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+|+|.+|||||||++++.++.+...+.+|++..+. ..+...|....+.+||++|++++..+  +..+++.+|+++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~~i   78 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAM--RDQYMRCGEGFI   78 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHH--hHHHhhcCCEEE
Confidence            379999999999999999999999998877788876554 44566766678889999999999888  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.||+.+..|...+.+.....  ++|+++|+||+|+.+.+ ...++.+++++.++++ ++++||++| ||+++
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~--~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~~~  155 (172)
T cd04141          79 ICYSVTDRHSFQEASEFKKLITRVRLTE--DIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYIDDA  155 (172)
T ss_pred             EEEECCchhHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHHHH
Confidence            9999999999999999988887654333  69999999999997543 3467888899888875 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      |+++++.+..
T Consensus       156 f~~l~~~~~~  165 (172)
T cd04141         156 FHGLVREIRR  165 (172)
T ss_pred             HHHHHHHHHH
Confidence            9999987764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=99.93  E-value=8.1e-25  Score=210.93  Aligned_cols=162  Identities=19%  Similarity=0.361  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+++|..+.|...+.||.+..+. ..+.++|....+.+||++|+++++.+  +..+++++|++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l--~~~~~~~a~~~i   79 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL--RTLSYPQTNVFI   79 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhccCCCEEE
Confidence            489999999999999999999999998888888876554 33556766778899999999999988  788999999999


Q ss_pred             EEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcE
Q 005908          503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPI  568 (670)
Q Consensus       503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~  568 (670)
                      +|||++++.||+.+. .|...+.....    +.|+++|+||.||.+..             ...++++++++.++..+++
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~  155 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHCP----NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL  155 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence            999999999999997 58887766532    69999999999996532             2356788899998865699


Q ss_pred             EeecccC-ChHHHHHHHHHHHhCC
Q 005908          569 PVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       569 ~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ++||++| ||+++|+.+++.+..+
T Consensus       156 e~SAk~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         156 ECSALNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHhcc
Confidence            9999999 9999999999988764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.93  E-value=1.4e-24  Score=204.93  Aligned_cols=162  Identities=22%  Similarity=0.393  Sum_probs=141.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|++|||||||++++.+..+...+.+|++.++....+..+|....+.+||++|++.+..+  ...+++++|++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--~~~~~~~ad~~   79 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGAMGI   79 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhCCCCEE
Confidence            4589999999999999999999999998888888888777777888866678889999999888887  67889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|..+..|+..+......   +.|+++|+||+|+.+.. ...+++..+++.++.+ ++++||++| |+++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  155 (167)
T cd01867          80 ILVYDITDEKSFENIRNWMRNIEEHASE---DVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVEE  155 (167)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            9999999999999999999998876432   68999999999998643 3466778888888875 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+++.+.+.
T Consensus       156 ~~~~i~~~~~  165 (167)
T cd01867         156 AFFTLAKDIK  165 (167)
T ss_pred             HHHHHHHHHH
Confidence            9999998875

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04126 Rab20 Rab20 subfamily

Probab=99.93  E-value=8.8e-25  Score=213.46  Aligned_cols=159  Identities=25%  Similarity=0.287  Sum_probs=127.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +||+|+|++|||||||+++|+++.|....+++.....   ......+.+.||||+|++.+..+...+++++|++|+|||+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~---~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv   77 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFY---LKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV   77 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEE---EEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence            5899999999999999999999998654444332221   1123567899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC-------------------CCCccchhhhhhHHHHHhccC---
Q 005908           93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATSLEEVMGPIMQQFREI---  150 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~-------------------~~~~~~~~~~~~~~~~~~~~~---  150 (670)
                      +++++|+++...|....+...+++|+||||||+|+.+                   .+.+  ..+....++++.+..   
T Consensus        78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v--~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV--TLEDAKAFYKRINKYKML  155 (220)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC--CHHHHHHHHHHhCccccc
Confidence            9999999998645544444445799999999999976                   3343  344567777776532   


Q ss_pred             ---------CeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          151 ---------ETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       151 ---------~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                               .+|+||||++|.||+++|+.+++.++
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                     37999999999999999999998775

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04175 Rap1 Rap1 subgroup

Probab=99.93  E-value=8.5e-25  Score=205.78  Aligned_cols=159  Identities=25%  Similarity=0.352  Sum_probs=129.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++||+++|++|||||||+++++.+.+...++++.+. ......+....+.+.+|||||++.+..++..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            479999999999999999999988887765444433 2334445556788899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |+++..+++.+.+ |...+...  .++.|+++|+||+|+.....+ . .+....+++.++  .+++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~  155 (164)
T cd04175          81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV-G-KEQGQNLARQWG--CAFLETSAKAKINVNEIF  155 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEE-c-HHHHHHHHHHhC--CEEEEeeCCCCCCHHHHH
Confidence            9999999999985 77776542  358999999999999775544 2 233456667666  379999999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      +++.+.+
T Consensus       156 ~~l~~~l  162 (164)
T cd04175         156 YDLVRQI  162 (164)
T ss_pred             HHHHHHh
Confidence            9998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04128 Spg1 Spg1p

Probab=99.93  E-value=1.2e-24  Score=207.82  Aligned_cols=162  Identities=16%  Similarity=0.257  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+++|+++.+...+.+|.+.++..+.+.++|....+.+||++|++.+..+  +..+++++|++++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~iil   78 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM--LPLVCNDAVAILF   78 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh--hHHHCcCCCEEEE
Confidence            58999999999999999999999998888899988887778888876778899999999999887  7789999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC------cccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY------TMAVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      |||++++.||+++..|+..+.+....   ..| ++|+||+|+...      +...++.+++++.++.+ ++++||++| |
T Consensus        79 v~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~e~SAk~g~~  153 (182)
T cd04128          79 MFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP-LIFCSTSHSIN  153 (182)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            99999999999999999998776432   466 678999999531      11245677888888864 999999999 9


Q ss_pred             hHHHHHHHHHHHhCCC
Q 005908          577 LNNVFSRIIWAAEHPH  592 (670)
Q Consensus       577 v~~l~~~l~~~~~~~~  592 (670)
                      ++++|+++.+.+....
T Consensus       154 v~~lf~~l~~~l~~~~  169 (182)
T cd04128         154 VQKIFKIVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999998876533

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.93  E-value=6.5e-25  Score=208.70  Aligned_cols=160  Identities=26%  Similarity=0.396  Sum_probs=130.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      |+|+|++|||||||+++|.++.|...+.++. ........++...+.+.+|||||++.+..+...+++.+|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            6899999999999999999999877643332 222233444555678999999999999888999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC------------ccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           94 QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN------------ATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      ++++|+.+...|...+....+++|+++|+||+|+.....            +  ..+....+++.++. .++++|||++|
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa~~~  157 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPV--TYEQGEALAKRIGA-VKYLECSALTQ  157 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCc--cHHHHHHHHHHcCC-cEEEEecCCCC
Confidence            999999997679999988778999999999999975321            2  23345667777763 37999999999


Q ss_pred             CCchHHHHHHHHHHcC
Q 005908          162 IQVPDVFYYAQKAVLH  177 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~  177 (670)
                      .||+++|+.+++.+..
T Consensus       158 ~~v~~lf~~l~~~~~~  173 (174)
T smart00174      158 EGVREVFEEAIRAALN  173 (174)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999987754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=1e-24  Score=212.37  Aligned_cols=162  Identities=18%  Similarity=0.233  Sum_probs=132.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +||+++|++|||||||+++|+++.+...+.++.+...  ....+. ...+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            6999999999999999999999988776544443222  233444 5578899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      ||++++.+|+.+. .|...+...     ..++|++||+||+|+...+.+  ..+.+..+++..+ ..++++|||++|.||
T Consensus        81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~e~Sak~~~~v  156 (201)
T cd04107          81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG-FIGWFETSAKEGINI  156 (201)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC-CceEEEEeCCCCCCH
Confidence            9999999999997 588887642     257899999999999754444  3445677777766 237999999999999


Q ss_pred             hHHHHHHHHHHcCC
Q 005908          165 PDVFYYAQKAVLHP  178 (670)
Q Consensus       165 ~~l~~~i~~~~~~~  178 (670)
                      +++|+++.+.+...
T Consensus       157 ~e~f~~l~~~l~~~  170 (201)
T cd04107         157 EEAMRFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=1e-24  Score=210.16  Aligned_cols=164  Identities=21%  Similarity=0.328  Sum_probs=133.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .+.+||+++|++|||||||++++.++.+.....++.+ .......++...+.+.+|||||++++..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            4579999999999999999999999988766444333 333444556667889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.+|+.+.. |...+.+.  .++.|+++|+||+|+.+.+.+ . .+....+.+.++  .+++++||++|.||++
T Consensus        83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQV-S-TGEGQELAKSFG--IPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc-C-HHHHHHHHHHhC--CEEEEeeCCCCCCHHH
Confidence            999999999999985 88877654  247899999999999765554 2 333455566665  3799999999999999


Q ss_pred             HHHHHHHHHcCC
Q 005908          167 VFYYAQKAVLHP  178 (670)
Q Consensus       167 l~~~i~~~~~~~  178 (670)
                      +|+++.+.+...
T Consensus       158 ~~~~l~~~l~~~  169 (189)
T PTZ00369        158 AFYELVREIRKY  169 (189)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887644

>cd01865 Rab3 Rab3 subfamily

Probab=99.93  E-value=2.3e-24  Score=203.03  Aligned_cols=160  Identities=20%  Similarity=0.356  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|.++++...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|++++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~--~~~~~~~~~~~l~   79 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTI--TTAYYRGAMGFIL   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHccCCcEEEE
Confidence            79999999999999999999999998887788877777666766755678889999999988887  7888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+. ..+...++++.++++ ++++||++| |++++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~  155 (165)
T cd01865          80 MYDITNEESFNAVQDWSTQIKTYSWD---NAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQVF  155 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence            99999999999999999998766432   589999999999976543 356777888888875 999999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      +++.+.+.
T Consensus       156 ~~l~~~~~  163 (165)
T cd01865         156 ERLVDIIC  163 (165)
T ss_pred             HHHHHHHH
Confidence            99988764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01892 Miro2 Miro2 subfamily

Probab=99.93  E-value=1.4e-24  Score=205.08  Aligned_cols=164  Identities=37%  Similarity=0.604  Sum_probs=138.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ++.+||+++|.+|||||||+++|+++.+. ..+.||++.++....+.++|....+.+||++|++.+..+  +..+++++|
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~d   79 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL--NDAELAACD   79 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc--chhhhhcCC
Confidence            57899999999999999999999999998 777889988888788888876677888999999887776  677889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+|+.+..|+..+...   .  ++|+++|+||+|+.+... ...+.+++++.+++.+++++||++| |+
T Consensus        80 ~~llv~d~~~~~s~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (169)
T cd01892          80 VACLVYDSSDPKSFSYCAEVYKKYFML---G--EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS  154 (169)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHhccC---C--CCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence            999999999999999888888765321   1  699999999999965432 2445678888888866799999999 99


Q ss_pred             HHHHHHHHHHHhCC
Q 005908          578 NNVFSRIIWAAEHP  591 (670)
Q Consensus       578 ~~l~~~l~~~~~~~  591 (670)
                      +++|+.+.+.+..+
T Consensus       155 ~~lf~~l~~~~~~~  168 (169)
T cd01892         155 NELFTKLATAAQYP  168 (169)
T ss_pred             HHHHHHHHHHhhCC
Confidence            99999999987643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04140 ARHI_like ARHI subfamily

Probab=99.93  E-value=1.3e-24  Score=204.62  Aligned_cols=157  Identities=23%  Similarity=0.292  Sum_probs=126.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      .+||+++|++|||||||+++++++.|...+ |+....+..........+.+.+|||+|++++..+...+++.+|++|+||
T Consensus         1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            379999999999999999999999987663 4333333333444556788999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |++++.+++.+.. |+..++..    .+++|+++|+||+|+...+.+ . .+....++..++  .++++|||++|.||++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~SA~~g~~v~~  155 (165)
T cd04140          81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREV-S-SNEGAACATEWN--CAFMETSAKTNHNVQE  155 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCee-c-HHHHHHHHHHhC--CcEEEeecCCCCCHHH
Confidence            9999999999885 77777653    257999999999999765544 2 233455555554  3699999999999999


Q ss_pred             HHHHHHH
Q 005908          167 VFYYAQK  173 (670)
Q Consensus       167 l~~~i~~  173 (670)
                      +|+++++
T Consensus       156 ~f~~l~~  162 (165)
T cd04140         156 LFQELLN  162 (165)
T ss_pred             HHHHHHh
Confidence            9999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=99.92  E-value=1.1e-24  Score=210.07  Aligned_cols=161  Identities=22%  Similarity=0.348  Sum_probs=130.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      ||+++|++|||||||+++|+++.|...++++.+. ......+.+..+.+.+|||||++++...+..+++.+|++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            6899999999999999999999887765544432 223334555567899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ++..+++.+.. |...+...    .+++|+++|+||+|+...+.+ .. .....+++.++  .+++++||++|.||+++|
T Consensus        81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREV-ST-EEGAALARRLG--CEFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCcc-CH-HHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence            99999999985 87777553    247899999999999766555 33 33456667666  379999999999999999


Q ss_pred             HHHHHHHcCCC
Q 005908          169 YYAQKAVLHPT  179 (670)
Q Consensus       169 ~~i~~~~~~~~  179 (670)
                      +++.+.+....
T Consensus       156 ~~l~~~l~~~~  166 (190)
T cd04144         156 YTLVRALRQQR  166 (190)
T ss_pred             HHHHHHHHHhh
Confidence            99998876443

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.92  E-value=2.5e-24  Score=201.81  Aligned_cols=158  Identities=23%  Similarity=0.393  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||++++.++.+...+.+|.+.++....+...+....+.+||++|++.+..+  ...+++.+|++++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i~   78 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI--TKQYYRRAQGIFL   78 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh--HHHHhcCCcEEEE
Confidence            48999999999999999999999998877788887777777888866678889999999888887  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.||+.+..|+..+......   +.|+++|+||+|+.+.+ ...++...+++.++.+ ++++||++| |++++|
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f  154 (161)
T cd04117          79 VYDISSERSYQHIMKWVSDVDEYAPE---GVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKESF  154 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999998776432   59999999999997644 3467888899888865 999999999 999999


Q ss_pred             HHHHHH
Q 005908          582 SRIIWA  587 (670)
Q Consensus       582 ~~l~~~  587 (670)
                      ++|++.
T Consensus       155 ~~l~~~  160 (161)
T cd04117         155 TRLTEL  160 (161)
T ss_pred             HHHHhh
Confidence            999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=99.92  E-value=2.1e-24  Score=203.36  Aligned_cols=159  Identities=18%  Similarity=0.251  Sum_probs=129.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|.+++|...+.++.+...  .........+.+.+|||+|++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998776444333221  12233345688999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.+++.+.+ |...++... .++|+++|+||+|+.+.+.+ . .+....+.+.++  .+++++||++|.|++++|+
T Consensus        82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~  156 (165)
T cd01865          82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDERVV-S-SERGRQLADQLG--FEFFEASAKENINVKQVFE  156 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCccccc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence            9999999999975 998887654 47899999999999776554 2 344456666665  2799999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (165)
T cd01865         157 RLVDIIC  163 (165)
T ss_pred             HHHHHHH
Confidence            9987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=99.92  E-value=1.8e-24  Score=202.82  Aligned_cols=157  Identities=17%  Similarity=0.266  Sum_probs=129.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++++++.|.....++.+...  ....+....+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999998776444333222  23344455688999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.+|+.+.. |+..++... .+.|+++|+||+|+...+.+ . .+....+++.++  .++++|||++|.||+++|+
T Consensus        81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQKRQV-G-DEQGNKLAKEYG--MDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence            9999999999985 988887654 37999999999999877665 3 345566777666  4799999999999999999


Q ss_pred             HHHHH
Q 005908          170 YAQKA  174 (670)
Q Consensus       170 ~i~~~  174 (670)
                      ++.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.92  E-value=1.9e-24  Score=205.23  Aligned_cols=158  Identities=23%  Similarity=0.383  Sum_probs=133.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+++|.++.+...+.||++..+.. .+..++....+.+||++|++++..+  +..+++++|++|+
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il   78 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRL--RPLSYPQTDVFLV   78 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhh--hhhhcccCCEEEE
Confidence            799999999999999999999999987888888876653 3556656678889999999998887  6778999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCcEE
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~  569 (670)
                      |||++++.||+.+. .|+..+.....    +.|+++|+||+|+.+.             ....++++++++..+..++++
T Consensus        79 v~d~~~~~s~~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e  154 (175)
T cd01874          79 CFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE  154 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence            99999999999997 58888876542    6899999999998653             223567788888888556999


Q ss_pred             eecccC-ChHHHHHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~  588 (670)
                      +||++| |++++|+.+++.+
T Consensus       155 ~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         155 CSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             ecCCCCCCHHHHHHHHHHHh
Confidence            999999 9999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.92  E-value=2.3e-24  Score=203.41  Aligned_cols=161  Identities=17%  Similarity=0.278  Sum_probs=132.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+++|++|||||||++++.+..|...+.++.+...  ....+....+.+.+|||||++.+......+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            358999999999999999999999998877444443322  233445556889999999999988888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||++++.+|+.+.+ |+..+.... .+.|+++|+||+|+.+.+.+  ..+....++..++  .+++++||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~  156 (167)
T cd01867          82 VYDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYG--IKFLETSAKANINVEEA  156 (167)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence            999999999999985 998887653 47899999999999876554  2334556666665  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+++.+.+.
T Consensus       157 ~~~i~~~~~  165 (167)
T cd01867         157 FFTLAKDIK  165 (167)
T ss_pred             HHHHHHHHH
Confidence            999998875

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.92  E-value=1.5e-24  Score=202.10  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +||+++|++|||||||+++++.+.|....+++.+.....+.+.+..+.+.+|||+|++.     ..+++.+|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence            58999999999999999999998887765555444444445555568899999999864     3567899999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCC--CCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      +++.||+++.. |+..+....  +++|+++||||+|+..  .+.+  ..+..+.++++.+. ..|++|||++|.||+++|
T Consensus        76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVI--DDARARQLCADMKR-CSYYETCATYGLNVERVF  151 (158)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCccc--CHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHH
Confidence            99999999985 888887653  5789999999999853  3344  33445667766543 379999999999999999


Q ss_pred             HHHHHH
Q 005908          169 YYAQKA  174 (670)
Q Consensus       169 ~~i~~~  174 (670)
                      +.+.+.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            988764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04176 Rap2 Rap2 subgroup

Probab=99.92  E-value=2.2e-24  Score=202.73  Aligned_cols=159  Identities=23%  Similarity=0.314  Sum_probs=128.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++||+++|++|||||||+++++.+.+.....++.. .......+.+..+.+.||||||++++..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            47999999999999999999999998776544333 22234444555678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |++++.+++++.. |...+.+..  .++|+++|+||+|+.....+ . ......++..++  .++++|||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04176          81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREV-S-SAEGRALAEEWG--CPFMETSAKSKTMVNELF  155 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCcc-C-HHHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence            9999999999985 877776542  58999999999999765444 2 233456666665  379999999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      .++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd04176         156 AEIVRQM  162 (163)
T ss_pred             HHHHHhc
Confidence            9988653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04109 Rab28 Rab28 subfamily

Probab=99.92  E-value=4.3e-24  Score=209.97  Aligned_cols=165  Identities=22%  Similarity=0.302  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-ceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      +||+++|++|||||||+++|.++.+...+.+|.+.++....+.++++ ...+.+||++|++.+..+  ...+++++|++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~ad~ii   78 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM--LDKYIYGAHAVF   78 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH--HHHHhhcCCEEE
Confidence            58999999999999999999999998888889887777777877753 567889999999888887  778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.||+.+..|+..+.+.......+.|+++|+||+|+.+. ....+..+.+++.+++. ++++||++| |++++
T Consensus        79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~~l  157 (215)
T cd04109          79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVNLL  157 (215)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence            9999999999999999999998775432125789999999999753 34467788899888875 999999999 99999


Q ss_pred             HHHHHHHHhCC
Q 005908          581 FSRIIWAAEHP  591 (670)
Q Consensus       581 ~~~l~~~~~~~  591 (670)
                      |+++.+.+...
T Consensus       158 f~~l~~~l~~~  168 (215)
T cd04109         158 FQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHhc
Confidence            99999988654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.4e-25  Score=189.41  Aligned_cols=162  Identities=20%  Similarity=0.277  Sum_probs=137.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      +--+||++||+.|||||.|+++|+.+-|++....+.+...  +.+.+.+++++++||||+|+++|++.+.++++.|+++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            4458999999999999999999999998877554444433  56778889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|||++...+|+-+-+ |+.+++.+.. .+--|+||||+|+.+.+++  ..+..+++.+....  -|+|+||+...||+.
T Consensus        85 lvydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~drrev--p~qigeefs~~qdm--yfletsakea~nve~  159 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADRREV--PQQIGEEFSEAQDM--YFLETSAKEADNVEK  159 (213)
T ss_pred             EEEecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhhhhh--hHHHHHHHHHhhhh--hhhhhcccchhhHHH
Confidence            9999999999999985 9999988754 4455899999999988776  44555666665433  489999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|..+...+.
T Consensus       160 lf~~~a~rli  169 (213)
T KOG0095|consen  160 LFLDLACRLI  169 (213)
T ss_pred             HHHHHHHHHH
Confidence            9998887765

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.92  E-value=4.4e-24  Score=201.34  Aligned_cols=161  Identities=26%  Similarity=0.441  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+|+|++|||||||++++.++.+...+.+|.+.++....+...|....+.+||++|++.+..+  ...+++.+|+++
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~ii   79 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHGII   79 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhCcCCEEE
Confidence            489999999999999999999999988877788887777777877766678889999999888887  778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||+++++||..+..|+..+......   +.|+++|+||+|+...... .+++..+++.++.+ ++++||++| |++++
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~  155 (166)
T cd01869          80 IVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVEQA  155 (166)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHHHH
Confidence            999999999999999999998876532   5899999999998764433 57788888888875 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |+.|.+.+.
T Consensus       156 ~~~i~~~~~  164 (166)
T cd01869         156 FMTMAREIK  164 (166)
T ss_pred             HHHHHHHHH
Confidence            999998774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04136 Rap_like Rap-like subfamily

Probab=99.92  E-value=2.6e-24  Score=202.15  Aligned_cols=159  Identities=22%  Similarity=0.391  Sum_probs=134.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||++++.++.+...+.+|++.. ....+..++....+.+||++|++++..+  +..+++++|++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il   78 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQIEVDGQQCMLEILDTAGTEQFTAM--RDLYIKNGQGFVL   78 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCccccchH--HHHHhhcCCEEEE
Confidence            799999999999999999999999887777877643 3455667765667889999999998887  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+|+.+..|+..+.......  +.|+++|+||+|+.+.+. ..++...+++.++. +++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~  155 (163)
T cd04136          79 VYSITSQSSFNDLQDLREQILRVKDTE--NVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKINVDEVF  155 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Confidence            999999999999999999988765433  699999999999976433 35566778888774 5999999999 999999


Q ss_pred             HHHHHHH
Q 005908          582 SRIIWAA  588 (670)
Q Consensus       582 ~~l~~~~  588 (670)
                      +++.+.+
T Consensus       156 ~~l~~~~  162 (163)
T cd04136         156 ADLVRQI  162 (163)
T ss_pred             HHHHHhc
Confidence            9998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04127 Rab27A Rab27a subfamily

Probab=99.92  E-value=4.7e-24  Score=204.02  Aligned_cols=163  Identities=13%  Similarity=0.259  Sum_probs=138.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------CCceEEEEEecCChhhHhhhhch
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------GGNKKTLILQEIPEEGVKKILSN  491 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~----------g~~~~~~i~d~~g~~~~~~~~~~  491 (670)
                      +.+||+++|++|||||||++++.++.+...+.+|.+.++....+...          +....+.+||++|++.+..+  +
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~   80 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--T   80 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH--H
Confidence            56899999999999999999999999988877888766665544433          34567889999999998887  7


Q ss_pred             HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEe
Q 005908          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v  570 (670)
                      ..+++++|++++|||++++.||..+..|+..+.......  +.|+++|+||+|+.+.+ ...++++++++.++++ ++++
T Consensus        81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~  157 (180)
T cd04127          81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE--NPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFET  157 (180)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEE
Confidence            889999999999999999999999999999987764332  68999999999997643 3467788999998875 9999


Q ss_pred             ecccC-ChHHHHHHHHHHHh
Q 005908          571 SMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~  589 (670)
                      ||++| |++++|+.+.+.+.
T Consensus       158 Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999 99999999998764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=4.2e-24  Score=201.64  Aligned_cols=163  Identities=18%  Similarity=0.286  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|+++++...+.+|.+.++....+...|....+.+||++|++.+..+  ...+++.+|++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il   78 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV--RNEFYKDTQGVLL   78 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH--HHHHhccCCEEEE
Confidence            58999999999999999999999998888888888887777888877788899999999888877  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      |||++++.+|+.+..|+..+.+.....  ..+.|+++|+||+|+.++ ....++.+.+++..+.+ ++++||++| |+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  157 (168)
T cd04119          79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNE  157 (168)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence            999999999999999999998775420  116999999999999743 33466777788888865 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.|.+.+.
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.92  E-value=3.5e-24  Score=200.86  Aligned_cols=159  Identities=20%  Similarity=0.356  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+|+|+++.+...+.+|++..+ ...+.+++....+.+||++|++++..+  +..+++.+|++++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~~~~~i~   78 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFLC   78 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHH--HHHHHhcCCEEEE
Confidence            7999999999999999999999998887777777654 455566655567778999999999888  7889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      |||++++.+|+.+..|+..+.+.....  +.|+++|+||+|+.+......+..++++.++.+ ++++||++| |++++|+
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~  155 (162)
T cd04138          79 VFAINSRKSFEDIHTYREQIKRVKDSD--DVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEAFY  155 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHHHH
Confidence            999999999999999998888765433  689999999999987555567788888888875 999999999 9999999


Q ss_pred             HHHHHH
Q 005908          583 RIIWAA  588 (670)
Q Consensus       583 ~l~~~~  588 (670)
                      ++++.+
T Consensus       156 ~l~~~~  161 (162)
T cd04138         156 TLVREI  161 (162)
T ss_pred             HHHHHh
Confidence            998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04116 Rab9 Rab9 subfamily

Probab=99.92  E-value=4.9e-24  Score=201.84  Aligned_cols=164  Identities=16%  Similarity=0.291  Sum_probs=141.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|++|||||||+++|+++.+...+.++.+.++....+...+....+.+||++|++++..+  +..+++.+|++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~   81 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL--RTPFYRGSDCC   81 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHh--HHHHhcCCCEE
Confidence            4599999999999999999999999988777777777666666777767778889999999999888  77899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|+.+..|...+....... ..+.|+++|+||+|+.+.....++++++++.++..+++++||++| |+.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999998887654321 126899999999999865556788899999988767999999999 9999


Q ss_pred             HHHHHHHH
Q 005908          580 VFSRIIWA  587 (670)
Q Consensus       580 l~~~l~~~  587 (670)
                      +|+.+++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04127 Rab27A Rab27a subfamily

Probab=99.92  E-value=2.1e-24  Score=206.44  Aligned_cols=161  Identities=17%  Similarity=0.236  Sum_probs=131.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc----------CCceeEEEEeCCCCccchhhhHH
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY----------PDRVPVTIIDTSSSLENKGKLNE   78 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~   78 (670)
                      ..+||+++|++|||||||++++.++.+.....++.+...  ....+.          ...+.+.+|||||++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            458999999999999999999999988776444333221  111111          34588999999999999999999


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEe
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      +++++|++++|||+++++++.++.. |+..+...  .++.|+++|+||+|+.+.+.+  ..+....+++.++  .+++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQV--SEEQAKALADKYG--IPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCcc--CHHHHHHHHHHcC--CeEEEE
Confidence            9999999999999999999999984 99888764  357899999999999876655  3344677788776  379999


Q ss_pred             CcccCCCchHHHHHHHHHHc
Q 005908          157 SATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ||++|.|++++|+.+.+.+.
T Consensus       158 Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988765

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=2.1e-25  Score=192.66  Aligned_cols=170  Identities=15%  Similarity=0.240  Sum_probs=141.6

Q ss_pred             CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (670)
Q Consensus         4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (670)
                      .+-....-.+||+++|..-||||||+-|++.++|....-++.....  ..+.+.+....+.||||+|+++|..+-+.|++
T Consensus         5 ~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR   84 (218)
T KOG0088|consen    5 TNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR   84 (218)
T ss_pred             ccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe
Confidence            3344455689999999999999999999999998776322222111  44555566788999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      +++++|+|||++|++||+.+++ |..+++.. +..+.+++||||+||..++.+  ..+..+.++...|.  .++++||+.
T Consensus        85 gSnGalLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEeeR~V--t~qeAe~YAesvGA--~y~eTSAk~  159 (218)
T KOG0088|consen   85 GSNGALLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEERQV--TRQEAEAYAESVGA--LYMETSAKD  159 (218)
T ss_pred             CCCceEEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHhhhh--hHHHHHHHHHhhch--hheeccccc
Confidence            9999999999999999999996 99999874 446888999999999999988  44556888888886  599999999


Q ss_pred             CCCchHHHHHHHHHHcCC
Q 005908          161 MIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~  178 (670)
                      +.||.++|+.+....+..
T Consensus       160 N~Gi~elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  160 NVGISELFESLTAKMIEH  177 (218)
T ss_pred             ccCHHHHHHHHHHHHHHH
Confidence            999999999988776533

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.92  E-value=2.6e-24  Score=207.19  Aligned_cols=157  Identities=28%  Similarity=0.399  Sum_probs=123.0

Q ss_pred             ceEEEEEcCCCCCHHHHHH-HHHcCCC-----CCCCCCCCC---CeEeC--------CcccCCceeEEEEeCCCCccchh
Q 005908           12 GVRVVVVGDRGTGKSSLIA-AAATESV-----PEKVPPVHA---PTRLP--------PDFYPDRVPVTIIDTSSSLENKG   74 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~-~l~~~~~-----~~~~~~~~~---~~~~~--------~~~~~~~~~~~i~Dt~G~~~~~~   74 (670)
                      .+||+++|++|||||||+. ++.++.|     ...+.++.+   .....        ..+++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999996 6665543     333333331   12111        13456688999999999875  3


Q ss_pred             hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC-------------------CCCccc
Q 005908           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATS  135 (670)
Q Consensus        75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~-------------------~~~~~~  135 (670)
                      ....+++++|++|+|||++++.||+++...|...++...++.|++|||||+|+..                   .+.+  
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V--  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL--  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc--
Confidence            4567899999999999999999999997669999987767899999999999864                   2333  


Q ss_pred             hhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908          136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      ..+..+.++++++.  +|+||||++|.||+++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~--~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGI--PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCC--EEEEcCCCCCCCHHHHHHHHHHh
Confidence            34567888888873  79999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04175 Rap1 Rap1 subgroup

Probab=99.92  E-value=3.6e-24  Score=201.47  Aligned_cols=161  Identities=21%  Similarity=0.386  Sum_probs=136.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      ++||+++|.+|||||||+++++.+.+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i   77 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFV   77 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhH--HHHHHhhCCEEE
Confidence            379999999999999999999998887777788876554 45666656677789999999999988  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||+++..+|+.+..|+..+.......  +.|+++|+||+|+.+.... ....+++++.++.+ ++++||++| |++++
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~  154 (164)
T cd04175          78 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVNEI  154 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHHHH
Confidence            9999999999999999999987654333  7999999999999764433 55677888888865 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |+++.+.+.
T Consensus       155 ~~~l~~~l~  163 (164)
T cd04175         155 FYDLVRQIN  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999988653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04128 Spg1 Spg1p

Probab=99.92  E-value=2.7e-24  Score=205.30  Aligned_cols=160  Identities=19%  Similarity=0.295  Sum_probs=128.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|+++.|...+.++.+...  ....+.+..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999877555444322  33445555788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCC----CCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGD----HNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |++++.+++++.. |+..+++..+ ..| ++||||+|+...    ... ...+....+++.++  .++++|||++|.||+
T Consensus        81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~  155 (182)
T cd04128          81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE-EITKQARKYAKAMK--APLIFCSTSHSINVQ  155 (182)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchhhh-hhHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            9999999999974 9998877543 455 689999999632    111 12244566777766  379999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      ++|+++.+.+..
T Consensus       156 ~lf~~l~~~l~~  167 (182)
T cd04128         156 KIFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.92  E-value=5.4e-24  Score=201.23  Aligned_cols=160  Identities=23%  Similarity=0.330  Sum_probs=138.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+++|++|||||||+++|+++.+...+.+|++.++....+.+.|....+.+||++|++.+..+  +..+++++|++++|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv   79 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI--ASTYYRGAQAIIIV   79 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh--HHHHhcCCCEEEEE
Confidence            7999999999999999999999998888889888887777777766778899999999999888  78889999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc---cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ||++++.+|..+..|+..+.+.....  ..|+++|+||+|+.+...   ..+++..+++.++.+ ++++||++| |++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~~l  156 (170)
T cd04108          80 FDLTDVASLEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVREF  156 (170)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence            99999999999999999886654332  478999999999965432   245667778888765 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |+.|++.+.
T Consensus       157 f~~l~~~~~  165 (170)
T cd04108         157 FFRVAALTF  165 (170)
T ss_pred             HHHHHHHHH
Confidence            999998875

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01864 Rab19 Rab19 subfamily

Probab=99.92  E-value=5.9e-24  Score=200.23  Aligned_cols=161  Identities=22%  Similarity=0.368  Sum_probs=139.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|++|||||||++++.++.+...+.+|.+.++....+..++....+.+||++|++.+..+  +..+++.+|++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~   79 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI--TQSYYRSANGA   79 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEE
Confidence            4589999999999999999999999888777777777777777877755567889999999988887  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+. ..+.+.++++.++..+++++||++| |+++
T Consensus        80 llv~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  156 (165)
T cd01864          80 IIAYDITRRSSFESVPHWIEEVEKYGAS---NVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE  156 (165)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence            9999999999999999999998765432   689999999999976543 3677888999888777999999999 9999


Q ss_pred             HHHHHHHH
Q 005908          580 VFSRIIWA  587 (670)
Q Consensus       580 l~~~l~~~  587 (670)
                      +|+.+.+.
T Consensus       157 ~~~~l~~~  164 (165)
T cd01864         157 AFLLMATE  164 (165)
T ss_pred             HHHHHHHh
Confidence            99999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04111 Rab39 Rab39 subfamily

Probab=99.92  E-value=5.8e-24  Score=207.99  Aligned_cols=164  Identities=20%  Similarity=0.348  Sum_probs=141.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      .+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+. |....+.+||++|++.+..+  ...+++++|++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~i   79 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI--TRSYYRNSVGV   79 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH--HHHHhcCCcEE
Confidence            4899999999999999999999999988888888877777777764 44568889999999998887  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.||+.+..|+..+.......  ..|+++|+||+|+.+.. ...++..++++.+++. ++++||++| |+++
T Consensus        80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~~--~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e  156 (211)
T cd04111          80 LLVFDITNRESFEHVHDWLEEARSHIQPH--RPVFILVGHKCDLESQRQVTREEAEKLAKDLGMK-YIETSARTGDNVEE  156 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEccccccccccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHH
Confidence            99999999999999999999988765433  57899999999997643 3467788899998865 999999999 9999


Q ss_pred             HHHHHHHHHhCC
Q 005908          580 VFSRIIWAAEHP  591 (670)
Q Consensus       580 l~~~l~~~~~~~  591 (670)
                      +|+.|.+.+...
T Consensus       157 ~f~~l~~~~~~~  168 (211)
T cd04111         157 AFELLTQEIYER  168 (211)
T ss_pred             HHHHHHHHHHHH
Confidence            999999876433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.92  E-value=4.3e-24  Score=201.41  Aligned_cols=160  Identities=18%  Similarity=0.283  Sum_probs=130.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+++|++|||||||+++++++.+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999888666433333222  2333445567899999999999988899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||+++++++..+.+ |+..++... ++.|+++|+||+|+.....+ . .+....+++.++  .+++++||++|.||+++|
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~  156 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDKRVV-D-YSEAQEFADELG--IPFLETSAKNATNVEQAF  156 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCcCHHHHH
Confidence            99999999999985 999887754 57999999999998766554 2 344566666665  379999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      +.+.+.+.
T Consensus       157 ~~i~~~~~  164 (166)
T cd01869         157 MTMAREIK  164 (166)
T ss_pred             HHHHHHHH
Confidence            99988764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.92  E-value=4.4e-24  Score=200.82  Aligned_cols=160  Identities=18%  Similarity=0.288  Sum_probs=129.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +.+||+++|++|||||||+++++++.+....+++... ......+.+..+.+.+|||||++++..++..+++.+|++++|
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            3589999999999999999999998887665444433 223344555567899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ||++++.+++.+.. |...+.+.  ..++|+++|+||+|+.....+ . .+....+++.++  .+++++||++|.||+++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l  155 (164)
T cd04145          81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKV-S-REEGQELARKLK--IPYIETSAKDRLNVDKA  155 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccccee-c-HHHHHHHHHHcC--CcEEEeeCCCCCCHHHH
Confidence            99999999999985 77777553  347899999999999765544 2 234556666665  27999999999999999


Q ss_pred             HHHHHHHH
Q 005908          168 FYYAQKAV  175 (670)
Q Consensus       168 ~~~i~~~~  175 (670)
                      |+.+.+.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04145         156 FHDLVRVI  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998753

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.92  E-value=3.4e-24  Score=206.35  Aligned_cols=164  Identities=25%  Similarity=0.364  Sum_probs=132.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|.++.+...+.++... ........ ...+.+.+|||||++++......+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999987664443322 22223333 45678999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC---CccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |++++.+|+++...|+..+....+++|+++|+||+|+....   .. ...+....++..++. .++++|||++|.||+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGA-FAYLECSAKTMENVEEV  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCC-cEEEEccCCCCCCHHHH
Confidence            99999999999767988887766789999999999986542   11 123455667777653 37999999999999999


Q ss_pred             HHHHHHHHcCC
Q 005908          168 FYYAQKAVLHP  178 (670)
Q Consensus       168 ~~~i~~~~~~~  178 (670)
                      |+.+.+.+...
T Consensus       159 f~~l~~~~~~~  169 (187)
T cd04132         159 FDTAIEEALKK  169 (187)
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.92  E-value=7.4e-24  Score=199.55  Aligned_cols=161  Identities=19%  Similarity=0.357  Sum_probs=139.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|++|||||||++++.++.+...+.+|++.++....+..+|....+.+||++|++.+..+  ...+++.++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~   79 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAI--TSAYYRGAVGA   79 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHCCCCEE
Confidence            4589999999999999999999999988888888887777777888865667889999999988887  77888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|..+..|+..+......   +.|+++|+||+|+...+. ..++...++...+.. ++++||++| |+++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  155 (165)
T cd01868          80 LLVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVEE  155 (165)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence            9999999999999999999998876543   589999999999976433 366777888877765 999999999 9999


Q ss_pred             HHHHHHHHH
Q 005908          580 VFSRIIWAA  588 (670)
Q Consensus       580 l~~~l~~~~  588 (670)
                      +|+.+++.+
T Consensus       156 l~~~l~~~i  164 (165)
T cd01868         156 AFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=4.1e-24  Score=201.69  Aligned_cols=159  Identities=22%  Similarity=0.268  Sum_probs=129.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|+++++...+.++.+...  .........+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998776544443322  23445566789999999999998888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC------CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |++++.+++.+. .|...+.+..      .+.|+++|+||+|+.+....  ..+....++...+  .+++++||++|.||
T Consensus        81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG--FKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence            999999999987 4888887643      36899999999999754433  2344455666665  37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+.+.+.++
T Consensus       156 ~~l~~~l~~~l~  167 (168)
T cd04119         156 NEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=4.7e-24  Score=209.75  Aligned_cols=162  Identities=16%  Similarity=0.268  Sum_probs=139.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+++|.+|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..+  +..+++.+|+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~   88 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--RDGYYIHGQC   88 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHcccccE
Confidence            56699999999999999999999999988888888887777666767766778899999999999887  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      +|+|||++++.+|+.+..|+..+.+...    +.|+++|+||+|+.......+.. .+++..++. ++++||++| |+++
T Consensus        89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i~~  162 (219)
T PLN03071         89 AIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ-YYEISAKSNYNFEK  162 (219)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhhhhccCCHHHH-HHHHhcCCE-EEEcCCCCCCCHHH
Confidence            9999999999999999999999987643    69999999999997644444444 667776665 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|++|++.+..
T Consensus       163 ~f~~l~~~~~~  173 (219)
T PLN03071        163 PFLYLARKLAG  173 (219)
T ss_pred             HHHHHHHHHHc
Confidence            99999988754

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=4.5e-24  Score=201.08  Aligned_cols=158  Identities=18%  Similarity=0.282  Sum_probs=127.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++++.+.+.....++.+...  .........+.+.+|||+|++.+......+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998887766444443322  22233455788999999999998888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      |++++.+++.+. .|...+.+...++|+++|+||+|+... .+  ..+ ...+.+...  .+++++||++|.||+++|++
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~-~~--~~~-~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR-KV--KAK-QITFHRKKN--LQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-cC--CHH-HHHHHHHcC--CEEEEEeCCCCCChHHHHHH
Confidence            999999999997 499999887668999999999999732 22  122 233444332  47999999999999999999


Q ss_pred             HHHHHcC
Q 005908          171 AQKAVLH  177 (670)
Q Consensus       171 i~~~~~~  177 (670)
                      +.+.+..
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9988764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04124 RabL2 RabL2 subfamily

Probab=99.92  E-value=4.3e-24  Score=200.28  Aligned_cols=157  Identities=22%  Similarity=0.272  Sum_probs=126.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++++++.|.+...++.....  ....+....+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999988766443322221  23344556788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      |++++.+++++. .|+..+++..+++|+++|+||+|+...     ..+....+....+  .+++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN--LPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh-----HHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence            999999999987 599999877778999999999998532     1222334444443  37999999999999999999


Q ss_pred             HHHHHcC
Q 005908          171 AQKAVLH  177 (670)
Q Consensus       171 i~~~~~~  177 (670)
                      +.+.++.
T Consensus       153 l~~~~~~  159 (161)
T cd04124         153 AIKLAVS  159 (161)
T ss_pred             HHHHHHh
Confidence            9987654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.92  E-value=5.4e-24  Score=199.58  Aligned_cols=158  Identities=20%  Similarity=0.333  Sum_probs=126.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      .+||+++|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||+|++++..++..+++.+|++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            4799999999999999999999998877655444332 233445555677899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |++++.+++++.. |...+.+.  ..++|+++|+||+|+... ..  .......+.+.++  .+++++||++|.||+++|
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~  154 (162)
T cd04138          81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-TV--SSRQGQDLAKSYG--IPYIETSAKTRQGVEEAF  154 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ee--cHHHHHHHHHHhC--CeEEEecCCCCCCHHHHH
Confidence            9999999999875 77766553  247999999999999753 22  2334455666665  379999999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04138         155 YTLVREI  161 (162)
T ss_pred             HHHHHHh
Confidence            9998653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.92  E-value=5e-24  Score=200.46  Aligned_cols=159  Identities=20%  Similarity=0.333  Sum_probs=128.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+|+|++|||||||+++|++..+....+++.. .......+....+.+.+|||||++++...+..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            5899999999999999999999988776444333 233444455567889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ++++++++.+.. |...+.+.  ..++|+++|+||+|+...+..  ..+....+++.++  .+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHH
Confidence            999999999985 77766543  247899999999999765544  2344556666665  3799999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      ++.+.+.
T Consensus       156 ~l~~~~~  162 (164)
T smart00173      156 DLVREIR  162 (164)
T ss_pred             HHHHHHh
Confidence            9987654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04110 Rab35 Rab35 subfamily

Probab=99.92  E-value=8e-24  Score=205.52  Aligned_cols=164  Identities=24%  Similarity=0.374  Sum_probs=142.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+|+|++|||||||+++|.+..+...+.+|.+.++....++++|....+.+||++|++.+..+  +..+++.+|+
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~a~~   81 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI--TSTYYRGTHG   81 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHH--HHHHhCCCcE
Confidence            35799999999999999999999999988777788887787788888866678889999999888887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.+|+.+..|+..+.....    ..|+++|+||+|+.+... ..++...+++.++.. ++++||++| |++
T Consensus        82 iilv~D~~~~~s~~~~~~~~~~i~~~~~----~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi~  156 (199)
T cd04110          82 VIVVYDVTNGESFVNVKRWLQEIEQNCD----DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINVE  156 (199)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCHH
Confidence            9999999999999999999999877543    589999999999986544 357778888888865 999999999 999


Q ss_pred             HHHHHHHHHHhCC
Q 005908          579 NVFSRIIWAAEHP  591 (670)
Q Consensus       579 ~l~~~l~~~~~~~  591 (670)
                      ++|++|.+.+...
T Consensus       157 ~lf~~l~~~~~~~  169 (199)
T cd04110         157 EMFNCITELVLRA  169 (199)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.92  E-value=8.5e-24  Score=206.62  Aligned_cols=162  Identities=16%  Similarity=0.239  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|.+|||||||+++|.++.+...+.||+...+. ..+.++|....+.+||++|++.|..+  ...+++.+|++|+
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l--~~~~~~~~d~ill   78 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNV--RPLAYPDSDAVLI   78 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHH--hHHhccCCCEEEE
Confidence            69999999999999999999999998888899887765 34566766778889999999999888  7889999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCcEE
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~  569 (670)
                      |||+++++||+.+. .|...+.....    +.|++||+||+|+...             ....++.+.++++++..+|++
T Consensus        79 vfdis~~~Sf~~i~~~w~~~~~~~~~----~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E  154 (222)
T cd04173          79 CFDISRPETLDSVLKKWQGETQEFCP----NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE  154 (222)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence            99999999999984 67766655443    6999999999999652             133678999999999766999


Q ss_pred             eecccC-C-hHHHHHHHHHHHhCCC
Q 005908          570 VSMKSK-D-LNNVFSRIIWAAEHPH  592 (670)
Q Consensus       570 vSA~~g-~-v~~l~~~l~~~~~~~~  592 (670)
                      +||+++ | |+++|+.++.....+.
T Consensus       155 ~SAk~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         155 CSSRSSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             cCCCcCCcCHHHHHHHHHHHHHhcc
Confidence            999998 6 9999999999775533

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=2.5e-24  Score=187.23  Aligned_cols=162  Identities=19%  Similarity=0.275  Sum_probs=136.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeC--Cccc-CCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ...++++++|++-||||||+..++.++|.+-..++.+.....  ++.. +..+++++|||+|+++|.+.+.+|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            357899999999999999999999999988755544443311  1222 4478999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc--CCCCCE-EEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPI-IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pv-ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      ++|||++|++||+.+.+ |..+...+  .|+++| .|||+|+|+...+++  ..++.+.+++.++.  .|+|+||++|.|
T Consensus        86 llvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa~hgM--~FVETSak~g~N  160 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAASHGM--AFVETSAKNGCN  160 (213)
T ss_pred             EEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccc--cHHHHHHHHHhcCc--eEEEecccCCCc
Confidence            99999999999999996 98888654  356665 479999999999998  45667999999986  699999999999


Q ss_pred             chHHHHHHHHHHc
Q 005908          164 VPDVFYYAQKAVL  176 (670)
Q Consensus       164 i~~l~~~i~~~~~  176 (670)
                      |++.|+.+.+.+.
T Consensus       161 VeEAF~mlaqeIf  173 (213)
T KOG0091|consen  161 VEEAFDMLAQEIF  173 (213)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888765

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=2.4e-25  Score=186.71  Aligned_cols=164  Identities=20%  Similarity=0.340  Sum_probs=147.8

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEE
Q 005908          428 LFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD  506 (670)
Q Consensus       428 ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D  506 (670)
                      ++|++++|||+|+-++..+.|....- .|.+.++..++++.++...++.+||++|+++++++  +..|++++|+.+++||
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsv--t~ayyrda~allllyd   79 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV--THAYYRDADALLLLYD   79 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhh--hHhhhcccceeeeeee
Confidence            68999999999999999888765543 68889999999999988999999999999999999  9999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHH
Q 005908          507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRI  584 (670)
Q Consensus       507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l  584 (670)
                      ++++.||++...|+.++.++...   ...+++++||+|+..++ +..++.+.+++.+++| ++++||||| ||+..|-.|
T Consensus        80 iankasfdn~~~wlsei~ey~k~---~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~~i  155 (192)
T KOG0083|consen   80 IANKASFDNCQAWLSEIHEYAKE---AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFLAI  155 (192)
T ss_pred             cccchhHHHHHHHHHHHHHHHHh---hHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHHHH
Confidence            99999999999999999998776   48899999999997754 4478899999999998 999999999 999999999


Q ss_pred             HHHHhCCCCCCCC
Q 005908          585 IWAAEHPHLNIPE  597 (670)
Q Consensus       585 ~~~~~~~~~~~~~  597 (670)
                      .+.+.+.+...|.
T Consensus       156 a~~l~k~~~~~~~  168 (192)
T KOG0083|consen  156 AEELKKLKMGAPP  168 (192)
T ss_pred             HHHHHHhccCCCC
Confidence            9998776665443

>cd04110 Rab35 Rab35 subfamily

Probab=99.92  E-value=7.5e-24  Score=205.71  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=133.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+|+|++|||||||+++|.+..|...+.++.+...  ....+.+..+.+.+|||||++.+...+..+++++|++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            468999999999999999999999988765444333222  233344556789999999999998899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |||++++++++.+. .|+..+....+..|+++|+||+|+.....+  ..+....+...++  .+++++||++|.||+++|
T Consensus        85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110          85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMF  159 (199)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence            99999999999998 499999887778999999999999865544  3344556666665  479999999999999999


Q ss_pred             HHHHHHHcCC
Q 005908          169 YYAQKAVLHP  178 (670)
Q Consensus       169 ~~i~~~~~~~  178 (670)
                      +++.+.++..
T Consensus       160 ~~l~~~~~~~  169 (199)
T cd04110         160 NCITELVLRA  169 (199)
T ss_pred             HHHHHHHHHh
Confidence            9999988654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.92  E-value=6e-24  Score=200.93  Aligned_cols=160  Identities=17%  Similarity=0.232  Sum_probs=128.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      ||+++|++|||||||+++++++.|...+.++.+...  ....+.+..+.+.+|||||++++..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            899999999999999999999998877544443322  233444556889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           92 CNQQSTLSRLSSYWLPELRRL-EI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~-~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ++++.+++.+.. |++.+.+. .+ +.|+++|+||+|+.........++....++++++.  +++++||++|.||+++|+
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~g~~v~~lf~  158 (170)
T cd04108          82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA--EYWSVSALSGENVREFFF  158 (170)
T ss_pred             CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC--eEEEEECCCCCCHHHHHH
Confidence            999999999984 98887543 33 57899999999996554321234445566666653  799999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      .+.+.+.
T Consensus       159 ~l~~~~~  165 (170)
T cd04108         159 RVAALTF  165 (170)
T ss_pred             HHHHHHH
Confidence            9988764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=8.8e-25  Score=188.84  Aligned_cols=163  Identities=17%  Similarity=0.278  Sum_probs=146.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+++|..-||||||+-|++...|......|....+..+.+.+.+....+.||||+|+++|.++  -+-||++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHAL--GPIYYRgSn   87 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHAL--GPIYYRGSN   87 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhcc--CceEEeCCC
Confidence            346699999999999999999999999998877677777787788888877778999999999999998  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++|++||+.++.|..++......   .+.+++|+||+||.+++.. .++++.+++..+.. ++++||+.+ ||
T Consensus        88 GalLVyDITDrdSFqKVKnWV~Elr~mlGn---ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~Gi  163 (218)
T KOG0088|consen   88 GALLVYDITDRDSFQKVKNWVLELRTMLGN---EIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVGI  163 (218)
T ss_pred             ceEEEEeccchHHHHHHHHHHHHHHHHhCC---eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccCH
Confidence            999999999999999999999999988765   4889999999999886555 78899999999987 999999999 99


Q ss_pred             HHHHHHHHHHH
Q 005908          578 NNVFSRIIWAA  588 (670)
Q Consensus       578 ~~l~~~l~~~~  588 (670)
                      .++|+.+...+
T Consensus       164 ~elFe~Lt~~M  174 (218)
T KOG0088|consen  164 SELFESLTAKM  174 (218)
T ss_pred             HHHHHHHHHHH
Confidence            99999887755

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.92  E-value=5e-24  Score=200.00  Aligned_cols=157  Identities=17%  Similarity=0.269  Sum_probs=128.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc--CCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      +||+++|++|||||||+++++++.+.....++.+...  ....+.  ...+++.+|||||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999988766443332222  222333  557889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |||++++++++.+.. |...+....+++|+++|+||+|+..+..+ . .+....+++.++  .+++++||++|.|++++|
T Consensus        81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (162)
T cd04106          81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQAVI-T-NEEAEALAKRLQ--LPLFRTSVKDDFNVTELF  155 (162)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCCCHHHHH
Confidence            999999999999874 99888877778999999999999876555 3 344566777766  379999999999999999


Q ss_pred             HHHHHH
Q 005908          169 YYAQKA  174 (670)
Q Consensus       169 ~~i~~~  174 (670)
                      +++...
T Consensus       156 ~~l~~~  161 (162)
T cd04106         156 EYLAEK  161 (162)
T ss_pred             HHHHHh
Confidence            988753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04109 Rab28 Rab28 subfamily

Probab=99.92  E-value=5.9e-24  Score=209.01  Aligned_cols=161  Identities=20%  Similarity=0.215  Sum_probs=131.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +||+++|++|||||||+++|+++.|...+.++.+...  ....+.. ..+.+.||||+|++.+...+..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999988777555443222  2233332 468899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      ||++++++|+.+. .|...+.+..    .++|+++|+||+|+.+.+.+  ..+....+++.++  .++++|||++|.||+
T Consensus        81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~--~~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQANG--MESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCCCHH
Confidence            9999999999997 4999887653    24689999999999766655  3445667777776  379999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 005908          166 DVFYYAQKAVLHP  178 (670)
Q Consensus       166 ~l~~~i~~~~~~~  178 (670)
                      ++|+++.+.+...
T Consensus       156 ~lf~~l~~~l~~~  168 (215)
T cd04109         156 LLFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.92  E-value=8.6e-24  Score=200.59  Aligned_cols=157  Identities=21%  Similarity=0.353  Sum_probs=132.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|.+|||||||+.++.++.+...+.+|....+. ..+..++....+.+||++|++.+..+  +..+++++|++|+
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il   78 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVFLI   78 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhcCCCCEEEE
Confidence            69999999999999999999999998887788765443 34556666678889999999998887  7778999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEE
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (670)
                      |||+++++||+.+. .|+..+.....    +.|+++|+||+|+.+.+             ...++++++++.++..++++
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  154 (174)
T cd01871          79 CFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  154 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence            99999999999986 68887766532    69999999999996432             34678888999998656999


Q ss_pred             eecccC-ChHHHHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~  587 (670)
                      +||++| |++++|+.+++.
T Consensus       155 ~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         155 CSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             ecccccCCHHHHHHHHHHh
Confidence            999999 999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04135 Tc10 TC10 subfamily

Probab=99.91  E-value=6.2e-24  Score=201.95  Aligned_cols=160  Identities=23%  Similarity=0.361  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+++|++|||||||+++|.++.|.....++.. .......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            5899999999999999999999998766444332 222334445556778999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++++.+|+.+...|...++...+++|+++|+||+|+.+..            .+  ..+....+++.++. .++++|||+
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa~  157 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPV--TVEQGQKLAKEIGA-HCYVECSAL  157 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCC--CHHHHHHHHHHcCC-CEEEEecCC
Confidence            9999999999877999988767789999999999986532            22  23445667777764 369999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQKAV  175 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~  175 (670)
                      +|.||+++|+.+++.+
T Consensus       158 ~~~gi~~~f~~~~~~~  173 (174)
T cd04135         158 TQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            9999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=1e-23  Score=198.63  Aligned_cols=159  Identities=16%  Similarity=0.265  Sum_probs=133.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..+  ...++..+|++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   78 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--RDGYYIGGQCAII   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc--cHHHhcCCCEEEE
Confidence            58999999999999999999988887777778776666555666666778889999999888777  6778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      |||++++.+|+.+..|+..+.....    +.|+++|+||+|+..... .....++++..+.. ++++||++| |++++|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~  152 (166)
T cd00877          79 MFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKV-KAKQITFHRKKNLQ-YYEISAKSNYNFEKPFL  152 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccC-CHHHHHHHHHcCCE-EEEEeCCCCCChHHHHH
Confidence            9999999999999999999988754    599999999999985333 33345566655544 999999999 9999999


Q ss_pred             HHHHHHhC
Q 005908          583 RIIWAAEH  590 (670)
Q Consensus       583 ~l~~~~~~  590 (670)
                      +|++.+.+
T Consensus       153 ~l~~~~~~  160 (166)
T cd00877         153 WLARKLLG  160 (166)
T ss_pred             HHHHHHHh
Confidence            99988754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.91  E-value=5.2e-24  Score=199.92  Aligned_cols=158  Identities=25%  Similarity=0.382  Sum_probs=136.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      ||+++|++|||||||+++|.++.|.....++.+...  ....+....+.+.+||++|++.+......+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999999999999998887555442222  455566778899999999999998888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908           92 CNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      +++++|++.+. .|++.+....+ +.|++|||||+|+.+.+.+  ..+..+.++++++  .+|++|||+++.||.++|..
T Consensus        81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen   81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHH
T ss_pred             ccccccccccc-cccccccccccccccceeeeccccccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHH
Confidence            99999999999 69999988776 6999999999999876665  3345688888887  48999999999999999999


Q ss_pred             HHHHHc
Q 005908          171 AQKAVL  176 (670)
Q Consensus       171 i~~~~~  176 (670)
                      +++.+.
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04112 Rab26 Rab26 subfamily

Probab=99.91  E-value=1.8e-23  Score=201.74  Aligned_cols=167  Identities=22%  Similarity=0.410  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      +||+|+|++|||||||+++|.++.+.. .+.+|++.++....+...|....+.+||++|++.+..+  ...+++.+|+++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~i   78 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV--THAYYRDAHALL   78 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh--hHHHccCCCEEE
Confidence            589999999999999999999998864 45567777776667777766778889999999988887  678899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.+|+++..|+..+......   ++|+++|+||+|+...+ ...++.+.+++.++.+ ++++||++| |++++
T Consensus        79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~~l  154 (191)
T cd04112          79 LLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELA  154 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            999999999999999999998876543   58999999999997533 3466788888888865 999999999 99999


Q ss_pred             HHHHHHHHhCCCCCCC
Q 005908          581 FSRIIWAAEHPHLNIP  596 (670)
Q Consensus       581 ~~~l~~~~~~~~~~~~  596 (670)
                      |++|.+.+.......+
T Consensus       155 ~~~l~~~~~~~~~~~~  170 (191)
T cd04112         155 FTAVAKELKHRKYEQP  170 (191)
T ss_pred             HHHHHHHHHHhccccC
Confidence            9999998866544333

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.91  E-value=1e-23  Score=198.12  Aligned_cols=159  Identities=23%  Similarity=0.365  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||++++.++.+...+.+|.+ .+....+.++|....+.+||++|++++..+  +..+++++|++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~i~   78 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFIV   78 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccch--HHHHHhhCCEEEE
Confidence            7999999999999999999999999887777765 345566777766667889999999998888  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.||+++..|+..+.+.....  ++|+++|+||+|+..... ...+...+++.++. +++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~  155 (163)
T cd04176          79 VYSLVNQQTFQDIKPMRDQIVRVKGYE--KVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKTMVNELF  155 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHH
Confidence            999999999999999999888764333  799999999999965433 34567778877776 4999999999 999999


Q ss_pred             HHHHHHH
Q 005908          582 SRIIWAA  588 (670)
Q Consensus       582 ~~l~~~~  588 (670)
                      +++++.+
T Consensus       156 ~~l~~~l  162 (163)
T cd04176         156 AEIVRQM  162 (163)
T ss_pred             HHHHHhc
Confidence            9998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01864 Rab19 Rab19 subfamily

Probab=99.91  E-value=9.3e-24  Score=198.92  Aligned_cols=160  Identities=17%  Similarity=0.275  Sum_probs=128.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+++|++|||||||++++.++.+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999888776444333222  233344445789999999999888888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.+  ..+....+++.++. ..++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  157 (165)
T cd01864          82 AYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKNGM-LAVLETSAKESQNVEEA  157 (165)
T ss_pred             EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC-cEEEEEECCCCCCHHHH
Confidence            99999999999987 498888764 357999999999999876554  33445666666653 36899999999999999


Q ss_pred             HHHHHHH
Q 005908          168 FYYAQKA  174 (670)
Q Consensus       168 ~~~i~~~  174 (670)
                      |+.+.+.
T Consensus       158 ~~~l~~~  164 (165)
T cd01864         158 FLLMATE  164 (165)
T ss_pred             HHHHHHh
Confidence            9998864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00369 Ras-like protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=202.65  Aligned_cols=163  Identities=18%  Similarity=0.337  Sum_probs=138.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+|+|.+|||||||++++.++.+...+.+|++..+. ..+.++++...+.+||++|++.+..+  +..+++.+|++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~i   80 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEEYSAM--RDQYMRTGQGF   80 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCccchhh--HHHHhhcCCEE
Confidence            3589999999999999999999999988777788776553 55666766677889999999999888  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|+.+..|+..+.+.....  +.|+++|+||+|+.+... ...+...+++.++.+ ++++||++| |+++
T Consensus        81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi~~  157 (189)
T PTZ00369         81 LCVYSITSRSSFEEIASFREQILRVKDKD--RVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNVDE  157 (189)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCHHH
Confidence            99999999999999999999987765433  689999999999865432 355677788888765 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|+++++.+..
T Consensus       158 ~~~~l~~~l~~  168 (189)
T PTZ00369        158 AFYELVREIRK  168 (189)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>cd04124 RabL2 RabL2 subfamily

Probab=99.91  E-value=1.5e-23  Score=196.60  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=132.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||++++.++.+...+.++....+....+.+.+....+.+||++|++.+..+  +..+++.+|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   78 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM--HASYYHKAHACIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhCCCCEEEE
Confidence            58999999999999999999999888776666665555556666656667889999999999888  7889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      |||++++.+++.+..|+..+.+...    +.|+++|+||+|+...  ...+...+++..+++ ++++||++| |++++|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~  151 (161)
T cd04124          79 VFDVTRKITYKNLSKWYEELREYRP----EIPCIVVANKIDLDPS--VTQKKFNFAEKHNLP-LYYVSAADGTNVVKLFQ  151 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEECccCchh--HHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHH
Confidence            9999999999999999999876543    6899999999998542  234455666666664 999999999 9999999


Q ss_pred             HHHHHHhCC
Q 005908          583 RIIWAAEHP  591 (670)
Q Consensus       583 ~l~~~~~~~  591 (670)
                      .+++.+..+
T Consensus       152 ~l~~~~~~~  160 (161)
T cd04124         152 DAIKLAVSY  160 (161)
T ss_pred             HHHHHHHhc
Confidence            999887643

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01866 Rab2 Rab2 subfamily

Probab=99.91  E-value=2.2e-23  Score=197.01  Aligned_cols=162  Identities=19%  Similarity=0.325  Sum_probs=140.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|++|||||||++++.+..+...+.+|.+.++....+...+....+.+||++|++++..+  ...+++.+|++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~i   80 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAAGA   80 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEE
Confidence            4589999999999999999999999988887788777777777777766678889999999988887  77888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.. ...++...++...++. ++++||++| |+++
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~  156 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNS---NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVEE  156 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            9999999999999999999998776432   69999999999998543 3466778888888876 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.+.+.+.
T Consensus       157 ~~~~~~~~~~  166 (168)
T cd01866         157 AFINTAKEIY  166 (168)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04142 RRP22 RRP22 subfamily

Probab=99.91  E-value=2e-23  Score=201.82  Aligned_cols=170  Identities=19%  Similarity=0.218  Sum_probs=132.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh------hchHhhccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALAS  497 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~~  497 (670)
                      +||+|+|++|||||||+++|+++++...+.||++.++....+..+|....+.+||++|.+.+...      .....+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999998888888876666556666765677889999885432211      013456789


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHH-HhCCCCcEEeecccC
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQ-ELGIEPPIPVSMKSK  575 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~-~~~~~~~~~vSA~~g  575 (670)
                      +|++|+|||++++.||+.+..|+..+.+.......++|+++|+||+|+...+.. .+..+.++. ..++ +++++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEEEecCCCC
Confidence            999999999999999999999999887764211116999999999999664433 455666654 4455 4999999999


Q ss_pred             -ChHHHHHHHHHHHhCCCCC
Q 005908          576 -DLNNVFSRIIWAAEHPHLN  594 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~~~~  594 (670)
                       |++++|+.+++.+..+...
T Consensus       160 ~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         160 WHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCHHHHHHHHHHHhhccCCC
Confidence             9999999999988765443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN03110 Rab GTPase; Provisional

Probab=99.91  E-value=1.3e-23  Score=206.41  Aligned_cols=172  Identities=20%  Similarity=0.234  Sum_probs=137.8

Q ss_pred             CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (670)
Q Consensus         1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (670)
                      |...+.......+||+++|++|||||||+++|++..+.....++.+...  ..+.+....+.+.||||+|++++...+..
T Consensus         1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~   80 (216)
T PLN03110          1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA   80 (216)
T ss_pred             CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence            3344445555679999999999999999999999988765433333222  33445556789999999999999999999


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      +++.++++|+|||++++.+++.+. .|+..++... .++|+++|+||+|+...+.+  ..+....+...++  .+++++|
T Consensus        81 ~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~S  155 (216)
T PLN03110         81 YYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHLRSV--AEEDGQALAEKEG--LSFLETS  155 (216)
T ss_pred             HhCCCCEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccccCC--CHHHHHHHHHHcC--CEEEEEe
Confidence            999999999999999999999987 4988887654 47999999999999766554  3344566666664  4799999


Q ss_pred             cccCCCchHHHHHHHHHHcC
Q 005908          158 ATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~  177 (670)
                      |++|.||+++|+.+.+.+..
T Consensus       156 A~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        156 ALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988754

>cd04134 Rho3 Rho3 subfamily

Probab=99.91  E-value=1.3e-23  Score=202.33  Aligned_cols=162  Identities=21%  Similarity=0.293  Sum_probs=135.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+|+|++|||||||+++|.++.+...+.+|....+. ..+..++....+.+||++|++.+..+  +..+++.+|++++|
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~a~~~ilv   78 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRL--RSLSYADTDVIMLC   78 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhcccc--ccccccCCCEEEEE
Confidence            8999999999999999999999998887788776654 44556656678889999999988887  67789999999999


Q ss_pred             EECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-------------cHHHHHHHHHHhCCCCcEEe
Q 005908          505 YDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       505 ~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~v  570 (670)
                      ||++++.||+.+. .|+..+.....    +.|+++|+||+|+.+...             ..++..++++..+..+++++
T Consensus        79 ~dv~~~~sf~~~~~~~~~~i~~~~~----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (189)
T cd04134          79 FSVDSPDSLENVESKWLGEIREHCP----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC  154 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence            9999999999886 58888876543    699999999999976432             24456677777775569999


Q ss_pred             ecccC-ChHHHHHHHHHHHhCCCC
Q 005908          571 SMKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      ||++| |++++|+++++.+..+..
T Consensus       155 SAk~~~~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         155 SAKLNRGVNEAFTEAARVALNVRP  178 (189)
T ss_pred             cCCcCCCHHHHHHHHHHHHhcccc
Confidence            99999 999999999999876543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=99.91  E-value=1.2e-23  Score=202.91  Aligned_cols=162  Identities=21%  Similarity=0.313  Sum_probs=131.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +||+++|++|||||||+++|.++.+.. ..+++.+ ... ....+....+.+.||||||++.+......+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998754 3333332 222 2234555678899999999999888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||++++.+++++.. |+..+.... .++|+++|+||+|+...+.+  ..+....+...++  .+++++||++|.|++++|
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~Sa~~~~~v~~l~  155 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGERVV--KREDGERLAKEYG--VPFMETSAKTGLNVELAF  155 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhcccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence            99999999999985 888887765 37899999999999765544  2344566667665  379999999999999999


Q ss_pred             HHHHHHHcCCC
Q 005908          169 YYAQKAVLHPT  179 (670)
Q Consensus       169 ~~i~~~~~~~~  179 (670)
                      +++.+.+....
T Consensus       156 ~~l~~~~~~~~  166 (191)
T cd04112         156 TAVAKELKHRK  166 (191)
T ss_pred             HHHHHHHHHhc
Confidence            99999886553

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.91  E-value=1.3e-23  Score=202.53  Aligned_cols=162  Identities=21%  Similarity=0.343  Sum_probs=135.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+|+|.+|||||||+++|.++.+...+.+|++..+. ..+.++|....+.+||++|++++..+  +..+++.+|++|+|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv   77 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTAL--RDQWIREGEGFILV   77 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHHhCCEEEEE
Confidence            5899999999999999999999988877788776554 34556655567889999999998887  77899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      ||++++.||+.+..|+..+.........+.|+++|+||+|+...+. ...+..++++.++.. ++++||++| |++++|+
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l~~  156 (190)
T cd04144          78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERAFY  156 (190)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHHH
Confidence            9999999999999999888765432112689999999999975433 355677888888875 999999999 9999999


Q ss_pred             HHHHHHhC
Q 005908          583 RIIWAAEH  590 (670)
Q Consensus       583 ~l~~~~~~  590 (670)
                      ++.+.+..
T Consensus       157 ~l~~~l~~  164 (190)
T cd04144         157 TLVRALRQ  164 (190)
T ss_pred             HHHHHHHH
Confidence            99988753

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.91  E-value=1.3e-23  Score=197.89  Aligned_cols=159  Identities=20%  Similarity=0.258  Sum_probs=128.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe--EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+++|++|||||||+++|.++.+.....++.+..  ..........+.+.+|||||++.+...+..+++.++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            4799999999999999999999998876543333322  23334445567899999999999888899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||++++.+++++. +|+..++...+ ++|+++|+||+|+...+.+  ..+....+....+  .+++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  157 (165)
T cd01868          83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAEKNG--LSFIETSALDGTNVEEAF  157 (165)
T ss_pred             EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            9999999999998 49888877554 5999999999999876554  2334455665554  379999999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      +.+...+
T Consensus       158 ~~l~~~i  164 (165)
T cd01868         158 KQLLTEI  164 (165)
T ss_pred             HHHHHHh
Confidence            9998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04142 RRP22 RRP22 subfamily

Probab=99.91  E-value=1.4e-23  Score=202.95  Aligned_cols=164  Identities=19%  Similarity=0.246  Sum_probs=123.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhh--------hHHHhcc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKR   82 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~   82 (670)
                      +||+|+|++|||||||+++|+++.|...+.++.+...  ....+.+..+.+.+|||||...+...        ...+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999998776443332211  22334455688999999997643211        2345789


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +|++|+|||++++.|++.+.. |.+.+...    .+++|+++|+||+|+...+.+ . .+....++.+... .++++|||
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~-~-~~~~~~~~~~~~~-~~~~e~Sa  156 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA-P-RHVLSVLVRKSWK-CGYLECSA  156 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccc-c-HHHHHHHHHHhcC-CcEEEecC
Confidence            999999999999999999874 77777543    357999999999999765544 2 3344555433222 47999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~  180 (670)
                      ++|.||+++|+.+++.++....
T Consensus       157 k~g~~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         157 KYNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             CCCCCHHHHHHHHHHHhhccCC
Confidence            9999999999999998875543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01866 Rab2 Rab2 subfamily

Probab=99.91  E-value=1.6e-23  Score=197.97  Aligned_cols=160  Identities=20%  Similarity=0.268  Sum_probs=130.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+|+|++|||||||++++++.++....+++.+...  ...........+.+|||+|++++......+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999987776444333322  2334445567899999999998888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||++++.+++.+.. |+..++.. .+++|+++|+||+|+.....+  ..+....++...+  .+++++||++|.||+++|
T Consensus        84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~~  158 (168)
T cd01866          84 YDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEHG--LIFMETSAKTASNVEEAF  158 (168)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence            99999999999985 99888764 468999999999999865544  2334556666665  379999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      ..+.+.++
T Consensus       159 ~~~~~~~~  166 (168)
T cd01866         159 INTAKEIY  166 (168)
T ss_pred             HHHHHHHH
Confidence            99988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.91  E-value=7.8e-24  Score=201.06  Aligned_cols=158  Identities=26%  Similarity=0.369  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+++|++|||||||++++.++.|...++++.. .......+....+.+.+|||||++++...+..+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            6899999999999999999999888877555432 222334455556889999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++++.+|+.+.+.|+..++...++.|+++|+||+|+...            +.+  ..+....++++.+. .++++|||+
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~e~Sa~  157 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPV--SQSRAKALAEKIGA-CEYIECSAL  157 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCc--CHHHHHHHHHHhCC-CeEEEEeCC
Confidence            999999999876799888876668999999999998643            222  23445667776653 479999999


Q ss_pred             cCCCchHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQK  173 (670)
Q Consensus       160 ~~~gi~~l~~~i~~  173 (670)
                      +|.||+++|+.++-
T Consensus       158 ~~~~v~~lf~~~~~  171 (173)
T cd04130         158 TQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999997764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins

Probab=99.91  E-value=7.1e-25  Score=175.28  Aligned_cols=89  Identities=63%  Similarity=1.017  Sum_probs=84.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCC
Q 005908          227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ  306 (670)
Q Consensus       227 ~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~  306 (670)
                      +.+|...+++++++++++..|+++.+.|+|++||++|+++|+++||+||+|+|||+|||+|+|.|.+++++..++++|+|
T Consensus         1 n~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p~l~v~~~~   80 (89)
T PF08356_consen    1 NKPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYPKLDVPPDQ   80 (89)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCCCccCCCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999993289999999


Q ss_pred             ceecchhHH
Q 005908          307 SVELASEAV  315 (670)
Q Consensus       307 ~~~ls~~~~  315 (670)
                      ++|||+.|+
T Consensus        81 svELS~~gy   89 (89)
T PF08356_consen   81 SVELSPEGY   89 (89)
T ss_pred             eeecCcCcC
Confidence            999999873

It is found in all three eukaryotic kingdoms.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.2e-24  Score=183.50  Aligned_cols=168  Identities=20%  Similarity=0.282  Sum_probs=139.2

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      ++....-+|++++|+.|+|||.|+.+|+.++|..+...+.+...  .-+.+..+.++++||||+|+++|.+....|+++|
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            34455678999999999999999999999998887554444333  2234556789999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      -+.++|||++++++|+.+.+ |+..++... +++-+|++|||.||..++++ ...++ ..++++..  ..+.|+||++|+
T Consensus        83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tflEA-s~FaqEne--l~flETSa~TGe  157 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEA-SRFAQENE--LMFLETSALTGE  157 (214)
T ss_pred             cceEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChhhhh-hHHHH-Hhhhcccc--eeeeeecccccc
Confidence            99999999999999999996 999998764 57888999999999999988 55444 45555443  258999999999


Q ss_pred             CchHHHHHHHHHHcCC
Q 005908          163 QVPDVFYYAQKAVLHP  178 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~  178 (670)
                      ||+|.|-...+.++..
T Consensus       158 NVEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  158 NVEEAFLKCARTILNK  173 (214)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999888877644

>cd04125 RabA_like RabA-like subfamily

Probab=99.91  E-value=2.4e-23  Score=200.56  Aligned_cols=162  Identities=23%  Similarity=0.322  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|.++.+...+.+|.+.++....+..+|....+.+||++|++.+..+  +..+++++|++++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--~~~~~~~~d~iil   78 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL--NNSYYRGAHGYLL   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh--HHHHccCCCEEEE
Confidence            58999999999999999999999998777788887777777777766677889999999888877  7889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+|..+..|+..+......   +.|+++|+||+|+.+... .......+++..+++ ++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~i~~~~~~i~~~~~~---~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~~f  154 (188)
T cd04125          79 VYDVTDQESFENLKFWINEINRYARE---NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEEAF  154 (188)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence            99999999999999999998876543   589999999999985443 356777788888874 999999999 999999


Q ss_pred             HHHHHHHhCC
Q 005908          582 SRIIWAAEHP  591 (670)
Q Consensus       582 ~~l~~~~~~~  591 (670)
                      +++.+.+...
T Consensus       155 ~~l~~~~~~~  164 (188)
T cd04125         155 ILLVKLIIKR  164 (188)
T ss_pred             HHHHHHHHHH
Confidence            9999987643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.91  E-value=1.9e-23  Score=196.52  Aligned_cols=160  Identities=20%  Similarity=0.406  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|++|||||||+++|+++.+...+.+|+++.+. ..+..++....+.+||++|++++..+  ...+++.+|++++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~~~~~i~   77 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQEEFSAM--RDQYMRTGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE-EEEEECCEEEEEEEEECCCcccchHH--HHHHHhhCCEEEE
Confidence            48999999999999999999999988877777775543 44556656678889999999988887  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+|+.+..|+..+.+.....  +.|+++|+||+|+.+.+. ..+.+..+++.++.+ ++++||++| |++++|
T Consensus        78 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~  154 (164)
T smart00173       78 VYSITDRQSFEEIKKFREQILRVKDRD--DVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETSAKERVNVDEAF  154 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEeecCCCCCHHHHH
Confidence            999999999999999998887665433  689999999999976443 356777888888854 999999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      ++|.+.+.
T Consensus       155 ~~l~~~~~  162 (164)
T smart00173      155 YDLVREIR  162 (164)
T ss_pred             HHHHHHHh
Confidence            99998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.91  E-value=1.2e-24  Score=202.01  Aligned_cols=169  Identities=27%  Similarity=0.407  Sum_probs=149.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+|++|||+.+||||+|+..+..+.|... .|++.+.+...+.++ +..+.+.+|||+|+++|..+++..++++|+||
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            3568999999999999999999999999988 677776777777784 88899999999999999998889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC-----------CccchhhhhhHHHHHhccCCeEEEe
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      +||++.+++||+++.++|+.+++.++++.|+||||+|.||.++.           .. ...+....++++.|.. .|+||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~-Vt~~~g~~lA~~iga~-~y~Ec  159 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEP-VTYEQGLELAKEIGAV-KYLEC  159 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCc-ccHHHHHHHHHHhCcc-eeeee
Confidence            99999999999999999999999999999999999999998531           11 2345667888998864 79999


Q ss_pred             CcccCCCchHHHHHHHHHHcCCCC
Q 005908          157 SATTMIQVPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~~~~~  180 (670)
                      ||++..|+.++|+.+++..+.+..
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999999887654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.91  E-value=2.9e-23  Score=194.84  Aligned_cols=157  Identities=17%  Similarity=0.336  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC--CCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~--g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +||+++|++|||||||+++++++.+...+.+|.+.++....+.++  +....+.+||++|++.+..+  +..+++.+|++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~   78 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQAC   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh--HHHHhcCCCEE
Confidence            589999999999999999999998887777888776655555555  56678889999999999888  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++++|+.+..|+..+.....    +.|+++|+||+|+..+.. ..+++..+++.++++ ++++||++| |+++
T Consensus        79 v~v~d~~~~~s~~~l~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  153 (162)
T cd04106          79 ILVFSTTDRESFEAIESWKEKVEAECG----DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNVTE  153 (162)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence            999999999999999999998876543    699999999999976443 356788889888875 999999999 9999


Q ss_pred             HHHHHHHH
Q 005908          580 VFSRIIWA  587 (670)
Q Consensus       580 l~~~l~~~  587 (670)
                      +|+.|.+.
T Consensus       154 l~~~l~~~  161 (162)
T cd04106         154 LFEYLAEK  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04113 Rab4 Rab4 subfamily

Probab=99.91  E-value=1.6e-23  Score=196.44  Aligned_cols=157  Identities=21%  Similarity=0.271  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|.+..+....+++.+...  ....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            6999999999999999999999988666444333222  33445555688999999999998888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.++..+.. |+..++.. .+++|+++|+||+|+.....+  ..+....+...++  .+++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  155 (161)
T cd04113          81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFL  155 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence            9999999999884 88877654 468999999999999775544  3344566667666  4799999999999999999


Q ss_pred             HHHHH
Q 005908          170 YAQKA  174 (670)
Q Consensus       170 ~i~~~  174 (670)
                      ++.+.
T Consensus       156 ~~~~~  160 (161)
T cd04113         156 KCARS  160 (161)
T ss_pred             HHHHh
Confidence            98875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.91  E-value=3e-23  Score=195.06  Aligned_cols=160  Identities=20%  Similarity=0.398  Sum_probs=134.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++++++.+...+.+|++..+ ...+.+.|....+.+||++|++++..+  ...+++.+|+++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~i   78 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAM--REQYMRTGEGFL   78 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHH--HHHHHhhCCEEE
Confidence            47999999999999999999999888777667776544 344556655667889999999998887  778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.+|+.+..|+..+.+.....  +.|+++|+||+|+...+. ..++..++++.++. +++++||++| |++++
T Consensus        79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l  155 (164)
T cd04145          79 LVFSVTDRGSFEEVDKFHTQILRVKDRD--EFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAKDRLNVDKA  155 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCC--CCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCCCCCCHHHH
Confidence            9999999999999999998887754333  689999999999976443 35567788888887 4999999999 99999


Q ss_pred             HHHHHHHH
Q 005908          581 FSRIIWAA  588 (670)
Q Consensus       581 ~~~l~~~~  588 (670)
                      |+.+++.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04145         156 FHDLVRVI  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04140 ARHI_like ARHI subfamily

Probab=99.91  E-value=3e-23  Score=195.43  Aligned_cols=160  Identities=19%  Similarity=0.334  Sum_probs=131.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++++++.+...+.+|....+ ...+...++...+.+||++|++++..+  ...+++.+|++++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il   78 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAM--QRLSISKGHAFIL   78 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHH--HHHHhhcCCEEEE
Confidence            7999999999999999999999998777767766544 344455545667889999999988887  6778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+|+.+..|+..+.........+.|+++|+||+|+.+. ....++...++...+.. ++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~~f  157 (165)
T cd04140          79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQELF  157 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHHHH
Confidence            999999999999999988877654322126999999999999763 33355667778777764 999999999 999999


Q ss_pred             HHHHHH
Q 005908          582 SRIIWA  587 (670)
Q Consensus       582 ~~l~~~  587 (670)
                      ++|++.
T Consensus       158 ~~l~~~  163 (165)
T cd04140         158 QELLNL  163 (165)
T ss_pred             HHHHhc
Confidence            999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04116 Rab9 Rab9 subfamily

Probab=99.91  E-value=2e-23  Score=197.62  Aligned_cols=160  Identities=21%  Similarity=0.260  Sum_probs=128.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+||+++|++|||||||+++|+++.+.....++.+...  ....+....+.+.+|||||++++..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            3569999999999999999999999888776433333222  33445667788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      +|||++++.+++.+.. |...+...     ..++|+++|+||+|+. .+.+  ..+.+..++++++. .+++++||++|.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~  157 (170)
T cd04116          83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQV--STEEAQAWCRENGD-YPYFETSAKDAT  157 (170)
T ss_pred             EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-cccc--CHHHHHHHHHHCCC-CeEEEEECCCCC
Confidence            9999999999999874 87776542     2468999999999986 3333  33456677777753 379999999999


Q ss_pred             CchHHHHHHHHH
Q 005908          163 QVPDVFYYAQKA  174 (670)
Q Consensus       163 gi~~l~~~i~~~  174 (670)
                      |+.++|+.+++.
T Consensus       158 ~v~~~~~~~~~~  169 (170)
T cd04116         158 NVAAAFEEAVRR  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.91  E-value=2.5e-23  Score=207.39  Aligned_cols=163  Identities=15%  Similarity=0.217  Sum_probs=128.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+++|++|||||||+++|+++.|...+.++... ......+.+..+.+.||||+|++.+..+...++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999988765444433 23334455566889999999999888888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc----------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           92 CNQQSTLSRLSSYWLPELRRL----------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~----------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      ++++++|+++.. |...+...          ..++|+|+|+||+|+...+.+ ..+ .+..+..... ...++++||++|
T Consensus        81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~~-ei~~~~~~~~-~~~~~evSAktg  156 (247)
T cd04143          81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QRD-EVEQLVGGDE-NCAYFEVSAKKN  156 (247)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CHH-HHHHHHHhcC-CCEEEEEeCCCC
Confidence            999999999974 77777532          247999999999999765554 333 3344433222 236999999999


Q ss_pred             CCchHHHHHHHHHHcCCC
Q 005908          162 IQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~  179 (670)
                      .||+++|+.+......+.
T Consensus       157 ~gI~elf~~L~~~~~~p~  174 (247)
T cd04143         157 SNLDEMFRALFSLAKLPN  174 (247)
T ss_pred             CCHHHHHHHHHHHhcccc
Confidence            999999999998775444

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=1.7e-23  Score=201.92  Aligned_cols=154  Identities=16%  Similarity=0.260  Sum_probs=126.3

Q ss_pred             EcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCCh
Q 005908           18 VGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ   95 (670)
Q Consensus        18 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~   95 (670)
                      +|++|||||||+++++.+.|...+.++.+...  ....++...+++.||||+|++++..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888776544443322  3344556679999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908           96 STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus        96 ~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      .+|+.+. .|+..+++..+++|++|||||+|+... .+ .. +. ..+++..+  ..+++|||++|.||.++|+++++.+
T Consensus        81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~~-~~-~~~~~~~~--~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDR-KV-KA-KS-ITFHRKKN--LQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-cC-CH-HH-HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999998 499999887778999999999998642 33 22 22 24555544  3799999999999999999999988


Q ss_pred             cCC
Q 005908          176 LHP  178 (670)
Q Consensus       176 ~~~  178 (670)
                      ...
T Consensus       154 ~~~  156 (200)
T smart00176      154 IGD  156 (200)
T ss_pred             Hhc
Confidence            654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04111 Rab39 Rab39 subfamily

Probab=99.91  E-value=2.6e-23  Score=203.37  Aligned_cols=161  Identities=20%  Similarity=0.276  Sum_probs=129.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .+||+|+|++|||||||+++|+++.+.....++.+...  ....+ ....+.+.+|||+|++.+......+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999988776444333222  22222 2346789999999999998888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++++|+++.+ |+..+....  ..+|++||+||+|+...+.+  ..+....+++.++  .+++++||++|.||++
T Consensus        82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--MKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHH
Confidence            999999999999985 888876542  35778999999999876555  3444677777776  4799999999999999


Q ss_pred             HHHHHHHHHcC
Q 005908          167 VFYYAQKAVLH  177 (670)
Q Consensus       167 l~~~i~~~~~~  177 (670)
                      +|+.+.+.+..
T Consensus       157 ~f~~l~~~~~~  167 (211)
T cd04111         157 AFELLTQEIYE  167 (211)
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.91  E-value=3.9e-23  Score=203.04  Aligned_cols=164  Identities=19%  Similarity=0.338  Sum_probs=143.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+++|++|||||||+++|.+..+...+.+|.+.++....+..+|....+.+||++|++++..+  ...+++.+++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~~~   87 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--TSAYYRGAVG   87 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhCCCCE
Confidence            46799999999999999999999999988777788888887788888866678889999999999888  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+..+.++..++++ ++++||++| |++
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v~  163 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADS---NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNVE  163 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCC---CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999988776532   6999999999999764433 66778888887765 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|+.+++.+.+
T Consensus       164 ~lf~~l~~~i~~  175 (216)
T PLN03110        164 KAFQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>cd04113 Rab4 Rab4 subfamily

Probab=99.91  E-value=3.4e-23  Score=194.18  Aligned_cols=158  Identities=21%  Similarity=0.383  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|++|||||||+++|.+..+...+.++.+..+....+.+++....+.+||++|++.+..+  +..+++.+|++++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~~~~~i~   78 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV--TRSYYRGAAGALL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh--HHHHhcCCCEEEE
Confidence            58999999999999999999999988877777777777677777766678889999999988887  7888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+|..+..|+..+......   +.|+++|+||+|+..... ..+++..+++..++. ++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~  154 (161)
T cd04113          79 VYDITNRTSFEALPTWLSDARALASP---NIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEEAF  154 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence            99999999999999999988765433   699999999999976433 367788888888855 999999999 999999


Q ss_pred             HHHHHH
Q 005908          582 SRIIWA  587 (670)
Q Consensus       582 ~~l~~~  587 (670)
                      +++++.
T Consensus       155 ~~~~~~  160 (161)
T cd04113         155 LKCARS  160 (161)
T ss_pred             HHHHHh
Confidence            999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03118 Rab family protein; Provisional

Probab=99.91  E-value=3.7e-23  Score=202.88  Aligned_cols=171  Identities=22%  Similarity=0.332  Sum_probs=134.8

Q ss_pred             CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (670)
Q Consensus         4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (670)
                      .++......+||+|+|++|||||||+++|++..+....++...... ....++...+.+.+|||||++++..++..+++.
T Consensus         6 ~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   85 (211)
T PLN03118          6 GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN   85 (211)
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence            4455566789999999999999999999999887543333222221 233444556889999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      +|++|+|||++++++|+.+.+.|...+....  .+.|+++|+||+|+.....+ . .+....+....+  .++++|||++
T Consensus        86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~SAk~  161 (211)
T PLN03118         86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-S-REEGMALAKEHG--CLFLECSAKT  161 (211)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-C-HHHHHHHHHHcC--CEEEEEeCCC
Confidence            9999999999999999999877887776542  36899999999999866554 2 333455556655  3699999999


Q ss_pred             CCCchHHHHHHHHHHcCC
Q 005908          161 MIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~  178 (670)
                      |.|++++|+.+.+.+...
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        162 RENVEQCFEELALKIMEV  179 (211)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999988653

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=1.1e-23  Score=198.59  Aligned_cols=157  Identities=10%  Similarity=0.072  Sum_probs=118.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||+++|..+.+....|++. ....  .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g-~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG-FNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcc-cceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            467999999999999999999999877765444432 2221  2334678999999999999988899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH--Hhc-cCCeEEEeCcccCCCch
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFR-EIETCVECSATTMIQVP  165 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~SA~~~~gi~  165 (670)
                      ||++++.+++++...|.+.+... .+++|++||+||+|+....   .. +.+.....  ... ...++++|||++|.||+
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~-~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KP-HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CH-HHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            99999999999886555555432 3579999999999986531   11 22222221  111 11258999999999999


Q ss_pred             HHHHHHHH
Q 005908          166 DVFYYAQK  173 (670)
Q Consensus       166 ~l~~~i~~  173 (670)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99998864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04148 RGK RGK subfamily

Probab=99.91  E-value=3.2e-23  Score=204.14  Aligned_cols=190  Identities=18%  Similarity=0.304  Sum_probs=145.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcc-cccEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA-SCDVT  501 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~-~ad~v  501 (670)
                      +||+++|++|||||||+++|+++.+. ..+.++.+.++....+.+.+....+.+||++|++.  .+  ...++. .+|++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~--~~~~~~~~ad~i   76 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WT--EDSCMQYQGDAF   76 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HH--HhHHhhcCCCEE
Confidence            58999999999999999999988876 55556665456667777776677888999999972  22  334556 89999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|+.+..|+..+.......  ++|+|+|+||+|+.+.+. ..++...++..+++. ++++||++| |+++
T Consensus        77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv~~  153 (221)
T cd04148          77 VVVYSVTDRSSFERASELRIQLRRNRQLE--DRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNVDE  153 (221)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Confidence            99999999999999999999887764333  699999999999976443 355667788888875 999999999 9999


Q ss_pred             HHHHHHHHHhCCCCCCCCCc---ccccHHHHHHHhhhhhhhhcc
Q 005908          580 VFSRIIWAAEHPHLNIPETE---TGRNRKRYRHLVNSSLVFVSG  620 (670)
Q Consensus       580 l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  620 (670)
                      +|+.+++.+...........   ....+.|+..++.+|...+..
T Consensus       154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~  197 (221)
T cd04148         154 LLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGK  197 (221)
T ss_pred             HHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHH
Confidence            99999998864443332222   234455667677777766553

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.91  E-value=3.4e-23  Score=199.36  Aligned_cols=162  Identities=22%  Similarity=0.351  Sum_probs=135.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      +||+|+|++|||||||+++|.++.+...+.+|++..+.. .+..+ +....+.+||++|++.+..+  ...+++.+|+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii   77 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRL--RPLSYPDVDVLL   77 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHH--HHHhCCCCCEEE
Confidence            589999999999999999999999887777777766543 34454 55668889999999988887  777899999999


Q ss_pred             EEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----MAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +|||++++.||+.+. .|+..+.....    +.|+++|+||+|+....     ....++++++..++..+++++||++| 
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  153 (187)
T cd04132          78 ICYAVDNPTSLDNVEDKWFPEVNHFCP----GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME  153 (187)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence            999999999999986 58777765432    68999999999997532     23678888999998856999999999 


Q ss_pred             ChHHHHHHHHHHHhCCC
Q 005908          576 DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~~~  592 (670)
                      |++++|+.+.+.+....
T Consensus       154 ~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         154 NVEEVFDTAIEEALKKE  170 (187)
T ss_pred             CHHHHHHHHHHHHHhhh
Confidence            99999999999886543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.91  E-value=2.7e-23  Score=197.71  Aligned_cols=163  Identities=24%  Similarity=0.368  Sum_probs=128.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +.||+|+|++|||||||+++|.++.|...+.++... ......+....+.+.+|||+|++.+......+++++|++++||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            368999999999999999999999987664443332 2233445556778999999999988888878899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      |++++++++.+...|...++...+++|+++|+||+|+......          .........+++.++. .++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA-FGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC-cEEEEecccc
Confidence            9999999999977799988876678999999999998653210          0112334555666553 3799999999


Q ss_pred             CCCchHHHHHHHHHH
Q 005908          161 MIQVPDVFYYAQKAV  175 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~  175 (670)
                      |.||+++|+++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04177 RSR1 RSR1 subgroup

Probab=99.91  E-value=3.8e-23  Score=195.38  Aligned_cols=161  Identities=22%  Similarity=0.318  Sum_probs=130.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++||+++|++|||||||+++|.++.+...+.++.+. ......+....+.+.+|||||++++..+++.+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            479999999999999999999999887664443332 2233445566688999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |++++++++.... |...+.+.  ..+.|+++|+||+|+...+..  ..+....+++.++. .+++++||++|.||+++|
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~-~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQV--SREDGVSLSQQWGN-VPFYETSARKRTNVDEVF  156 (168)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHcCC-ceEEEeeCCCCCCHHHHH
Confidence            9999999999985 88877652  347999999999999766554  23334556666653 379999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      +++.+.++
T Consensus       157 ~~i~~~~~  164 (168)
T cd04177         157 IDLVRQII  164 (168)
T ss_pred             HHHHHHHh
Confidence            99988654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04125 RabA_like RabA-like subfamily

Probab=99.91  E-value=3.1e-23  Score=199.73  Aligned_cols=161  Identities=21%  Similarity=0.292  Sum_probs=129.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|.++.|...+.++.+...  ....+....+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999998765433333222  23344455788999999999998889999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.+++.+.. |+..++... .+.|+++|+||+|+.+...+  ..+....++...+  .+++++||++|.||+++|+
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSLN--IPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCcccccC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence            9999999999986 998887653 46899999999999866554  2333455555554  2799999999999999999


Q ss_pred             HHHHHHcCC
Q 005908          170 YAQKAVLHP  178 (670)
Q Consensus       170 ~i~~~~~~~  178 (670)
                      ++.+.+...
T Consensus       156 ~l~~~~~~~  164 (188)
T cd04125         156 LLVKLIIKR  164 (188)
T ss_pred             HHHHHHHHH
Confidence            999987643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.91  E-value=6.4e-23  Score=194.16  Aligned_cols=161  Identities=19%  Similarity=0.330  Sum_probs=138.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh-hhhchHhhcccccEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCDVT  501 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~ad~v  501 (670)
                      .+||+++|++|||||||+++++++.+...+.+|.+.++....+.++|....+.+||++|++.+. .+  ...+++++|++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~d~~   79 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSM--VQHYYRNVHAV   79 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhh--HHHhhcCCCEE
Confidence            4799999999999999999999998887777787777777778888777788999999998876 35  66788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeeccc---C-C
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKS---K-D  576 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~---g-~  576 (670)
                      ++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+..... ..++.+++++..+++ ++++||++   + |
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~  156 (170)
T cd04115          80 VFVYDVTNMASFHSLPSWIEECEQHSLPN--EVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDH  156 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcCCC--CCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCC
Confidence            99999999999999999999988765433  699999999999976543 366778888888765 99999999   7 8


Q ss_pred             hHHHHHHHHHHH
Q 005908          577 LNNVFSRIIWAA  588 (670)
Q Consensus       577 v~~l~~~l~~~~  588 (670)
                      ++++|..+++.+
T Consensus       157 i~~~f~~l~~~~  168 (170)
T cd04115         157 VEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04126 Rab20 Rab20 subfamily

Probab=99.90  E-value=4.9e-23  Score=201.19  Aligned_cols=156  Identities=17%  Similarity=0.302  Sum_probs=129.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|.+|||||||+++|+++.+.. +.+|++..+....+    +...+.+||++|++.+..+  ...+++.+|++|+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~Il   73 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGL--GSMYCRGAAAVIL   73 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhh--HHHHhccCCEEEE
Confidence            589999999999999999999999864 45677655443322    3466889999999998888  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--------------------CcccHHHHHHHHHHhC
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--------------------YTMAVQDSARVTQELG  563 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~--------------------~~~~~~~~~~~~~~~~  563 (670)
                      |||++++.||+.+..|+..+.+....   +.|+|+|+||+|+.+                    +....+++..++++++
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~---~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~  150 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDTANE---DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN  150 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence            99999999999999988887765322   689999999999975                    2333778889998876


Q ss_pred             C-------------CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          564 I-------------EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       564 ~-------------~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      .             .+|+++||++| ||+++|+.+++.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         151 KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            2             35999999999 99999999998764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04148 RGK RGK subfamily

Probab=99.90  E-value=6.6e-23  Score=201.90  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCC--CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc-cCCEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK-RADAVVL   88 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~ii~   88 (670)
                      +||+++|++|||||||+++|+++.+. ..++++.+  .......+......+.+|||+|++  ......+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988875 44444332  223444555677889999999987  233445667 9999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.+|+.+.+ |+..+....  .++|+|+|+||+|+...+.+ . .+....++..++  .+++++||++|.||++
T Consensus        79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREV-S-VQEGRACAVVFD--CKFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccccee-c-HHHHHHHHHHcC--CeEEEecCCCCCCHHH
Confidence            999999999999875 888886643  57999999999999776655 3 333456666665  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+.+.+.+.
T Consensus       154 l~~~l~~~~~  163 (221)
T cd04148         154 LLEGIVRQIR  163 (221)
T ss_pred             HHHHHHHHHH
Confidence            9999998884

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01892 Miro2 Miro2 subfamily

Probab=99.90  E-value=3.4e-23  Score=195.63  Aligned_cols=163  Identities=17%  Similarity=0.180  Sum_probs=128.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCC-eE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ++.+||+++|++|||||||+++|+++.|. ..+.++.+. .. ....+.+..+.+.+||++|++.+..+...+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            56799999999999999999999999987 654444333 22 2334455567899999999999888888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |+|||++++.+++.+.+ |+..+... .++|+++|+||+|+.+...+  .....+.+.+.++. ..++++||++|.|+++
T Consensus        82 llv~d~~~~~s~~~~~~-~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  156 (169)
T cd01892          82 CLVYDSSDPKSFSYCAE-VYKKYFML-GEIPCLFVAAKADLDEQQQR--YEVQPDEFCRKLGL-PPPLHFSSKLGDSSNE  156 (169)
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHhccC-CCCeEEEEEEcccccccccc--cccCHHHHHHHcCC-CCCEEEEeccCccHHH
Confidence            99999999999998864 77766432 37999999999999755433  12234556666653 2469999999999999


Q ss_pred             HHHHHHHHHcC
Q 005908          167 VFYYAQKAVLH  177 (670)
Q Consensus       167 l~~~i~~~~~~  177 (670)
                      +|+.+.+.+..
T Consensus       157 lf~~l~~~~~~  167 (169)
T cd01892         157 LFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHhhC
Confidence            99999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.90  E-value=4.4e-23  Score=194.05  Aligned_cols=158  Identities=16%  Similarity=0.253  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCCCCCeE--eCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      +||+++|++|||||||+++|..+  .+..++.++.+...  ....+ ....+.+.+|||||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  46666544333222  22223 245689999999999988888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|||++++.+++.+. .|+..+....+++|+++|+||+|+.+...+ . ......+...++  .++++|||++|.||+++
T Consensus        81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l  155 (164)
T cd04101          81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADKAEV-T-DAQAQAFAQANQ--LKFFKTSALRGVGYEEP  155 (164)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccccCC-C-HHHHHHHHHHcC--CeEEEEeCCCCCChHHH
Confidence            999999999999887 599888776668999999999999766544 2 222344555554  36999999999999999


Q ss_pred             HHHHHHHH
Q 005908          168 FYYAQKAV  175 (670)
Q Consensus       168 ~~~i~~~~  175 (670)
                      |+.+.+.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04101         156 FESLARAF  163 (164)
T ss_pred             HHHHHHHh
Confidence            99998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.90  E-value=4e-23  Score=199.25  Aligned_cols=155  Identities=16%  Similarity=0.261  Sum_probs=133.9

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC
Q 005908          429 FGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS  508 (670)
Q Consensus       429 vG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s  508 (670)
                      +|.+|||||||+++|+.+.+...+.+|++.++....+.+.+....+.+||++|++.+..+  +..+++++|++|+|||++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~ilV~D~t   78 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL--RDGYYIQGQCAIIMFDVT   78 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhcCCCEEEEEEECC
Confidence            699999999999999998888777788887777777777777788999999999999988  788999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908          509 DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       509 ~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      ++.||+.+..|+.++.+...    +.|+++|+||+|+..+....+. ..+++..++. +++|||++| ||.++|++|++.
T Consensus        79 ~~~S~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       79 ARVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             ChHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCHHH-HHHHHHcCCE-EEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999987653    6999999999999764433333 4677777776 999999999 999999999998


Q ss_pred             HhCC
Q 005908          588 AEHP  591 (670)
Q Consensus       588 ~~~~  591 (670)
                      +...
T Consensus       153 i~~~  156 (200)
T smart00176      153 LIGD  156 (200)
T ss_pred             HHhc
Confidence            7543

Ran is involved in the active transport of proteins through nuclear pores.

>cd01863 Rab18 Rab18 subfamily

Probab=99.90  E-value=7.5e-23  Score=191.84  Aligned_cols=159  Identities=19%  Similarity=0.338  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+...+....+.+||++|++.+..+  ....++.+|++++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~   78 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL--TSSYYRGAQGVIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhCCCCEEEE
Confidence            58999999999999999999999887767788887777676777756678889999999888777  6778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      |+|++++.+|+.+..|+..+.......  +.|+++|+||+|+.......++..++++..+++ ++++||++| |++++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~  155 (161)
T cd01863          79 VYDVTRRDTFTNLETWLNELETYSTNN--DIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSAKTRDGVQQAFE  155 (161)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhCCCC--CCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHHHH
Confidence            999999999999999999988776544  799999999999986555677788888888776 999999999 9999999


Q ss_pred             HHHHH
Q 005908          583 RIIWA  587 (670)
Q Consensus       583 ~l~~~  587 (670)
                      .+.+.
T Consensus       156 ~~~~~  160 (161)
T cd01863         156 ELVEK  160 (161)
T ss_pred             HHHHh
Confidence            98875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.90  E-value=2.9e-23  Score=195.55  Aligned_cols=157  Identities=23%  Similarity=0.321  Sum_probs=124.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCcc-chhhhHHHhccCCEEEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ii~v~d   91 (670)
                      ||+++|++|||||||+++++.+.+...++++. ........++...+.+.+|||||++. +......+++.+|++|+|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            69999999999999999999988876654433 22223344556677899999999885 34557788999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC-CCchHH
Q 005908           92 CNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM-IQVPDV  167 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~-~gi~~l  167 (670)
                      ++++.+|+.+.. |...+...   ..++|+++|+||+|+...+.+  ..+....+++.++  .+++++||++| .||+++
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146          81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQV--STEEGEKLASELG--CLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCcc--CHHHHHHHHHHcC--CEEEEeCCCCCchhHHHH
Confidence            999999999974 88888764   348999999999998765554  2344566777776  37999999999 599999


Q ss_pred             HHHHHHHH
Q 005908          168 FYYAQKAV  175 (670)
Q Consensus       168 ~~~i~~~~  175 (670)
                      |+.+.+.+
T Consensus       156 f~~l~~~~  163 (165)
T cd04146         156 FHELCREV  163 (165)
T ss_pred             HHHHHHHH
Confidence            99998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.90  E-value=4.2e-23  Score=196.23  Aligned_cols=158  Identities=22%  Similarity=0.353  Sum_probs=132.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEE
Q 005908          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY  505 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~  505 (670)
                      |+|+|++|||||||+++|.++.+...+.+|....+. ..+..+|....+.+||++|++.+..+  ...+++.+|++|+||
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ilv~   77 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRL--RPLSYPDTDVFLICF   77 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchh--chhhcCCCCEEEEEE
Confidence            589999999999999999999998877777765544 45566766667889999999988877  677889999999999


Q ss_pred             ECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEEee
Q 005908          506 DSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       506 D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      |++++.||+.+. .|+..+.....    +.|+++|+||+|+....             ...+++.++++.++..+++++|
T Consensus        78 d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  153 (174)
T smart00174       78 SVDSPASFENVKEKWYPEVKHFCP----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS  153 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence            999999999986 58888876543    69999999999997532             2356678899999875699999


Q ss_pred             cccC-ChHHHHHHHHHHHhC
Q 005908          572 MKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~~~~  590 (670)
                      |++| |++++|+.+++.+.+
T Consensus       154 a~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      154 ALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CCCCCCHHHHHHHHHHHhcC
Confidence            9999 999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=5.5e-23  Score=192.99  Aligned_cols=159  Identities=25%  Similarity=0.442  Sum_probs=142.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+++|+++||||||+++|.++.+...+.+|.+.+.....+...+....+.+||++|++.+..+  ....++++|++|+|
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~ii~   78 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL--RDIFYRNSDAIIIV   78 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH--HHHHHTTESEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            7999999999999999999999998888888877777788888877788999999999888887  67789999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      ||++++.||+.+..|+..+......   +.|+++|+||.|+.+ .....+++++++++++ .+++++||+++ |+.++|.
T Consensus        79 fd~~~~~S~~~~~~~~~~i~~~~~~---~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~  154 (162)
T PF00071_consen   79 FDVTDEESFENLKKWLEEIQKYKPE---DIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIFQ  154 (162)
T ss_dssp             EETTBHHHHHTHHHHHHHHHHHSTT---TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHHH
T ss_pred             ccccccccccccccccccccccccc---cccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHHH
Confidence            9999999999999999999988763   589999999999987 4444788999999999 45999999999 9999999


Q ss_pred             HHHHHHh
Q 005908          583 RIIWAAE  589 (670)
Q Consensus       583 ~l~~~~~  589 (670)
                      .+++.+.
T Consensus       155 ~~i~~i~  161 (162)
T PF00071_consen  155 ELIRKIL  161 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04118 Rab24 Rab24 subfamily

Probab=99.90  E-value=8.7e-23  Score=197.55  Aligned_cols=160  Identities=18%  Similarity=0.289  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      +||+|+|++|||||||+++|+++.+.. .+.+|++..+....+.++|....+.+||++|++++..+  ...+++++|+++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~ii   78 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM--SRIYYRGAKAAI   78 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHhhcCCCCEEE
Confidence            489999999999999999999998874 46678887777777888877778889999999888887  677889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----ccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----MAVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      +|||++++.+|+.+..|+..+.....    +.|+++|+||+|+.+..     ....++.+++..++.. ++++||++| |
T Consensus        79 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g  153 (193)
T cd04118          79 VCYDLTDSSSFERAKFWVKELQNLEE----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTGQN  153 (193)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhcCC----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCCCC
Confidence            99999999999999999998876532    68999999999986432     1245667777777765 999999999 9


Q ss_pred             hHHHHHHHHHHHhC
Q 005908          577 LNNVFSRIIWAAEH  590 (670)
Q Consensus       577 v~~l~~~l~~~~~~  590 (670)
                      ++++|+.+.+.+.+
T Consensus       154 v~~l~~~i~~~~~~  167 (193)
T cd04118         154 VDELFQKVAEDFVS  167 (193)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998854

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.90  E-value=5.7e-23  Score=194.50  Aligned_cols=159  Identities=21%  Similarity=0.314  Sum_probs=127.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccch-hhhHHHhccCCEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVL   88 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~ii~   88 (670)
                      .+||+++|++|||||||+++++.+.+.....++.+...  ....+....+.+.+|||+|++++. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999999887665433332221  233445566899999999998876 467888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc---CCC
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MIQ  163 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---~~g  163 (670)
                      |||++++.++..+.. |...+....  .++|+++|+||+|+...+.+  ..+....+++...  .++++|||++   +.|
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~~~  156 (170)
T cd04115          82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQV--PTDLAQRFADAHS--MPLFETSAKDPSENDH  156 (170)
T ss_pred             EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCC--CHHHHHHHHHHcC--CcEEEEeccCCcCCCC
Confidence            999999999999984 998887643  57999999999999876655  2344556666664  4799999999   899


Q ss_pred             chHHHHHHHHHH
Q 005908          164 VPDVFYYAQKAV  175 (670)
Q Consensus       164 i~~l~~~i~~~~  175 (670)
                      |+++|..+.+.+
T Consensus       157 i~~~f~~l~~~~  168 (170)
T cd04115         157 VEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHHh
Confidence            999999888754

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01861 Rab6 Rab6 subfamily

Probab=99.90  E-value=1e-22  Score=190.85  Aligned_cols=158  Identities=19%  Similarity=0.353  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|+++.+...+.++++.++....+..+|....+.+||++|++.+..+  ...+++.+|++++
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--~~~~~~~~~~ii~   78 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL--IPSYIRDSSVAVV   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEEEE
Confidence            48999999999999999999999998877788887777787888866677889999999888887  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+|+.+..|+..+......   +.|+++|+||+|+.... ...++...+++..+.. ++++||++| |+++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~  154 (161)
T cd01861          79 VYDITNRQSFDNTDKWIDDVRDERGN---DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKELF  154 (161)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999988765432   59999999999995433 3467778888888765 999999999 999999


Q ss_pred             HHHHHH
Q 005908          582 SRIIWA  587 (670)
Q Consensus       582 ~~l~~~  587 (670)
                      +++.+.
T Consensus       155 ~~i~~~  160 (161)
T cd01861         155 RKIASA  160 (161)
T ss_pred             HHHHHh
Confidence            999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04118 Rab24 Rab24 subfamily

Probab=99.90  E-value=7.9e-23  Score=197.83  Aligned_cols=162  Identities=20%  Similarity=0.241  Sum_probs=128.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +||+|+|++|||||||+++|+++.|.. .+.++.+...  ....+....+.+.+|||+|++++..+...+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 3443333322  2344555567889999999999888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC--ccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ||++++.+++.+. .|+..++...++.|+++|+||+|+.....  .....+....++..++  .+++++||++|.||+++
T Consensus        81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK--AQHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHH
Confidence            9999999999987 49999987766899999999999864321  1011233455566654  36899999999999999


Q ss_pred             HHHHHHHHcC
Q 005908          168 FYYAQKAVLH  177 (670)
Q Consensus       168 ~~~i~~~~~~  177 (670)
                      |+.+.+.+..
T Consensus       158 ~~~i~~~~~~  167 (193)
T cd04118         158 FQKVAEDFVS  167 (193)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03108 Rab family protein; Provisional

Probab=99.90  E-value=1.6e-22  Score=197.95  Aligned_cols=164  Identities=18%  Similarity=0.307  Sum_probs=141.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+.+....+.+||++|++.+..+  +..+++.+|+
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~--~~~~~~~ad~   81 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--TRSYYRGAAG   81 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCCE
Confidence            35699999999999999999999999988887788887777777777766667889999999888887  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+ ...++.+++++.++++ ++++||++| |++
T Consensus        82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~  157 (210)
T PLN03108         82 ALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVE  157 (210)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999887665432   69999999999997654 3467888899988875 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|+++++.+.+
T Consensus       158 e~f~~l~~~~~~  169 (210)
T PLN03108        158 EAFIKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887743

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.90  E-value=1e-22  Score=191.33  Aligned_cols=159  Identities=21%  Similarity=0.264  Sum_probs=129.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-e-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++||+++|++|||||||+++|+++++.....++.+. . .....++...+.+.+|||||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            489999999999999999999999987643332332 2 23445666778999999999998888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      +|++++++++.... |+..+.... ++.|+++|+||+|+......  ..+....+....+  .+++++||++|.|+.++|
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESKRQV--STEEAQEYADENG--LLFFETSAKTGENVNELF  155 (163)
T ss_pred             EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccCcC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            99999999999884 888886654 67999999999998865443  2234455666665  379999999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      +++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9998865

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=9.1e-23  Score=194.70  Aligned_cols=158  Identities=12%  Similarity=0.132  Sum_probs=120.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||++++..+.+....|++ +....  .+...++.+.+|||||++.+..++..+++++|++|+|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~-g~~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V   91 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCc-ceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            45789999999999999999999988776544443 22222  2445678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------CCeEEEeCcccCC
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTMI  162 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~~  162 (670)
                      ||+++++++......+...+.. ..+++|++||+||+|+.+....       +.+...++-      ...+++|||++|+
T Consensus        92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~l~l~~~~~~~~~~~~~Sa~~g~  164 (181)
T PLN00223         92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH-------HHHHHHhCccccCCCceEEEeccCCCCC
Confidence            9999999999887644444433 2357999999999998754221       222222221      1136689999999


Q ss_pred             CchHHHHHHHHHHcC
Q 005908          163 QVPDVFYYAQKAVLH  177 (670)
Q Consensus       163 gi~~l~~~i~~~~~~  177 (670)
                      ||.++|+++.+.+..
T Consensus       165 gv~e~~~~l~~~~~~  179 (181)
T PLN00223        165 GLYEGLDWLSNNIAN  179 (181)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999887653

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.90  E-value=1.8e-22  Score=189.75  Aligned_cols=160  Identities=23%  Similarity=0.409  Sum_probs=138.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||++|++.+..+  ...+++.+|++++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~il   78 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI--TSSYYRGAVGALL   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhCCCCEEEE
Confidence            58999999999999999999999887777677777777777888766668889999999888877  7888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+++.+..|+..+..+...   ++|+++|+||+|+.+.. ...+.++++++.+++. ++++||++| |+++++
T Consensus        79 v~d~~~~~s~~~~~~~l~~~~~~~~~---~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~l~  154 (164)
T smart00175       79 VYDITNRESFENLKNWLKELREYADP---NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEEAF  154 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence            99999999999999999998876532   69999999999987643 3467788888888876 999999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      +.+.+.+.
T Consensus       155 ~~i~~~~~  162 (164)
T smart00175      155 EELAREIL  162 (164)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab GTPases are implicated in vesicle trafficking.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.90  E-value=2.2e-22  Score=189.31  Aligned_cols=158  Identities=22%  Similarity=0.304  Sum_probs=131.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +||+++|++|||||||++++.+.  .+...+.+|++.++....+.++ +....+.+||++|++.+..+  ...+++++|+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~   78 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM--VSNYWESPSV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH--HHHHhCCCCE
Confidence            58999999999999999999864  5666777888777666666655 35578889999999888887  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.+|..+..|+..+.....    +.|+++|+||+|+.+.... ....+.+...++.+ ++++||++| |++
T Consensus        79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  153 (164)
T cd04101          79 FILVYDVSNKASFENCSRWVNKVRTASK----HMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGYE  153 (164)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCChH
Confidence            9999999999999999999998877642    6999999999999764433 44556677777765 999999999 999


Q ss_pred             HHHHHHHHHH
Q 005908          579 NVFSRIIWAA  588 (670)
Q Consensus       579 ~l~~~l~~~~  588 (670)
                      ++|+.+.+.+
T Consensus       154 ~l~~~l~~~~  163 (164)
T cd04101         154 EPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04129 Rho2 Rho2 subfamily

Probab=99.90  E-value=1.2e-22  Score=195.33  Aligned_cols=165  Identities=26%  Similarity=0.356  Sum_probs=129.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +.||+|+|++|||||||+++|..+.+.....++. ........+....+.+.+|||+|++.+....+.+++.+|++++||
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            3699999999999999999999887765533322 222223334455677999999999888777777889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC---------CccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---------NATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      |+++.++++.+...|...++...+++|+++||||+|+.+..         .. ...+....+++.++. .++++|||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRF-VPIQQGKRVAKEIGA-KKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCc-CCHHHHHHHHHHhCC-cEEEEccCCCC
Confidence            99999999999877999998777789999999999985421         11 112345666777763 37999999999


Q ss_pred             CCchHHHHHHHHHHcCC
Q 005908          162 IQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~  178 (670)
                      .||+++|+.+.+.++..
T Consensus       159 ~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         159 EGVDDVFEAATRAALLV  175 (187)
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999877543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.90  E-value=2.4e-22  Score=188.77  Aligned_cols=159  Identities=24%  Similarity=0.372  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+|+++++++...+.+|.+..+....+...+....+.+||++|++++...  +..+++.+|++++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~   79 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL--APMYYRGAAAAIV   79 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhccCCEEEE
Confidence            79999999999999999999999988766778887777777888876778899999999888877  6778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |+|++++.++.....|+..+......   +.|+++|+||+|+... ....+....++..++.. ++++||++| |+.++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          80 VYDITSEESFEKAKSWVKELQRNASP---NIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVNELF  155 (163)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence            99999999999999999998776532   6999999999998743 33466777888888865 999999999 999999


Q ss_pred             HHHHHHH
Q 005908          582 SRIIWAA  588 (670)
Q Consensus       582 ~~l~~~~  588 (670)
                      +++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.90  E-value=1.6e-22  Score=192.26  Aligned_cols=156  Identities=12%  Similarity=0.114  Sum_probs=117.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||++++..+.+....|++.... .  .+....+.+.+|||||+..+...+..+++++|++|+|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNV-E--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccce-E--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            457999999999999999999998777754344432222 1  2234578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc------cCCeEEEeCcccCC
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------EIETCVECSATTMI  162 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~SA~~~~  162 (670)
                      ||++++.+++...+.|...++.. .+++|++||+||+|+.+....   .    ++...++      ....++++||++|.
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---A----EITEKLGLHSIRDRNWYIQPTCATSGD  160 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---H----HHHHHhCccccCCCcEEEEEeeCCCCC
Confidence            99999999999886455444432 357999999999999654221   1    1111111      11247789999999


Q ss_pred             CchHHHHHHHHHH
Q 005908          163 QVPDVFYYAQKAV  175 (670)
Q Consensus       163 gi~~l~~~i~~~~  175 (670)
                      ||+++|+++.+.+
T Consensus       161 gv~e~~~~l~~~~  173 (175)
T smart00177      161 GLYEGLTWLSNNL  173 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999987764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.90  E-value=1e-22  Score=196.07  Aligned_cols=156  Identities=22%  Similarity=0.343  Sum_probs=123.9

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHhcCC-----CCCCCCCCcc--cceEEE-------EEEcCCCceEEEEEecCChhhHhh
Q 005908          423 VFRCLLFGPQNAGKSALLN-SFLERP-----FSENYAPTTG--EQYAVN-------VVDQPGGNKKTLILQEIPEEGVKK  487 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin-~l~~~~-----~~~~~~~t~~--~~~~~~-------~vd~~g~~~~~~i~d~~g~~~~~~  487 (670)
                      .+||+++|.+|||||||+. ++.++.     +...+.||++  +.+...       .+.++|....+.+||++|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 665543     3445567774  223222       124566677889999999865  2


Q ss_pred             hhchHhhcccccEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------------
Q 005908          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------------  547 (670)
Q Consensus       488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------------  547 (670)
                      +  ...+++++|++|+|||++++.||+.+. .|+..+.....    +.|+++|+||+||.+                   
T Consensus        80 ~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~  153 (195)
T cd01873          80 D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKN  153 (195)
T ss_pred             h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhccccccchhhhccccccccccc
Confidence            3  455889999999999999999999997 58888876643    689999999999864                   


Q ss_pred             -CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908          548 -YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       548 -~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                       ..+..++++++++++++ +|++|||++| ||+++|+.++++
T Consensus       154 ~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         154 ADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence             23347889999999998 4999999999 999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.90  E-value=1.2e-22  Score=190.83  Aligned_cols=159  Identities=23%  Similarity=0.348  Sum_probs=127.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-E-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-R-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|.+..+.....++.+.. . ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            699999999999999999999988765533322222 1 23344444578999999999988888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.+++.+.. |+..+.... +++|+++|+||+|+...+..  ..+....+.+.++  .+++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~l~~  155 (164)
T smart00175       81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHG--LPFFETSAKTNTNVEEAFE  155 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence            9999999999885 888887654 68999999999998765443  2344555666665  3699999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      .+.+.+.
T Consensus       156 ~i~~~~~  162 (164)
T smart00175      156 ELAREIL  162 (164)
T ss_pred             HHHHHHh
Confidence            9998764

Rab GTPases are implicated in vesicle trafficking.

>cd04177 RSR1 RSR1 subgroup

Probab=99.90  E-value=1.8e-22  Score=190.71  Aligned_cols=161  Identities=25%  Similarity=0.398  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+++....+.+||++|++.+..+  ...+++.++++++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~vl   78 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM--RELYIKSGQGFLL   78 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhh--hHHHHhhCCEEEE
Confidence            7899999999999999999999998877777777554 466677766678889999999998888  7888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.+++....|...+.+.....  +.|+++|+||+|+...+. ..++...+++.++..+++++||++| |++++|
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          79 VYSVTSEASLNELGELREQVLRIKDSD--NVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF  156 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCC--CCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHH
Confidence            999999999999999998887654333  699999999999976443 3556677778877556999999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      +++.+.+.
T Consensus       157 ~~i~~~~~  164 (168)
T cd04177         157 IDLVRQII  164 (168)
T ss_pred             HHHHHHHh
Confidence            99987653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.90  E-value=1.4e-22  Score=188.92  Aligned_cols=153  Identities=18%  Similarity=0.273  Sum_probs=123.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++++.+.+...+.++ ...+ ...+.+.|....+.+||++|++.       ..+++.+|++++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il   71 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF   71 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence            48999999999999999999998887665443 4444 35677776666788999999854       235678999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      |||++++.||+.+..|+..+.......  +.|+++|+||.|+..   +....++++++++..+..++++|||++| ||++
T Consensus        72 v~d~~~~~sf~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~  149 (158)
T cd04103          72 VFSLENEASFQTVYNLYHQLSSYRNIS--EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVER  149 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence            999999999999999999998765433  689999999999853   2334667788888775345999999999 9999


Q ss_pred             HHHHHHHH
Q 005908          580 VFSRIIWA  587 (670)
Q Consensus       580 l~~~l~~~  587 (670)
                      +|+.+++.
T Consensus       150 ~f~~~~~~  157 (158)
T cd04103         150 VFQEAAQK  157 (158)
T ss_pred             HHHHHHhh
Confidence            99999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01861 Rab6 Rab6 subfamily

Probab=99.90  E-value=1.5e-22  Score=189.72  Aligned_cols=157  Identities=17%  Similarity=0.260  Sum_probs=124.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||+..+...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988665444333222  22334444578999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.+++.+.. |+..+.... .+.|+++|+||+|+......  ..+....+.+..+  .+++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHH
Confidence            9999999999884 888775533 36999999999999655444  2333455555554  4799999999999999999


Q ss_pred             HHHHH
Q 005908          170 YAQKA  174 (670)
Q Consensus       170 ~i~~~  174 (670)
                      ++.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            98764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03108 Rab family protein; Provisional

Probab=99.90  E-value=2.2e-22  Score=196.93  Aligned_cols=163  Identities=19%  Similarity=0.246  Sum_probs=131.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+||+|+|++|||||||+++|++.++.....++.+...  ....+....+.+.+|||+|++.+..++..+++.+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            3569999999999999999999999988766433333322  22344455678999999999998888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.+  ..+..+.+++.++  .+++++||+++.||++
T Consensus        84 lv~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~e  158 (210)
T PLN03108         84 LVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVEE  158 (210)
T ss_pred             EEEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence            9999999999999875 87777554 357999999999999876555  3344566777765  3799999999999999


Q ss_pred             HHHHHHHHHcC
Q 005908          167 VFYYAQKAVLH  177 (670)
Q Consensus       167 l~~~i~~~~~~  177 (670)
                      +|+++++.+..
T Consensus       159 ~f~~l~~~~~~  169 (210)
T PLN03108        159 AFIKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9.7e-23  Score=172.70  Aligned_cols=163  Identities=19%  Similarity=0.353  Sum_probs=148.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+|.+|+|+-|||||+|+..|...+|...-+.|++..+..+++.+.|...++.|||++|+++++.+  ++.+++.+-+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfrav--trsyyrgaag   86 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG   86 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH--HHHHhccccc
Confidence            46799999999999999999999999998887789999999999999998999999999999999999  8999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      .++|||++.+.++..+..|+........+   +..+++++||.||...+.. .+++.+|+++.++. +++.|||+| ||+
T Consensus        87 almvyditrrstynhlsswl~dar~ltnp---nt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nve  162 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVE  162 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCC---ceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHH
Confidence            99999999999999999999888766543   5789999999999876544 89999999999998 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      +.|-+..+.+-
T Consensus       163 dafle~akkiy  173 (215)
T KOG0097|consen  163 DAFLETAKKIY  173 (215)
T ss_pred             HHHHHHHHHHH
Confidence            99887777653

>cd01862 Rab7 Rab7 subfamily

Probab=99.89  E-value=3.4e-22  Score=189.52  Aligned_cols=165  Identities=19%  Similarity=0.312  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+|++.+..+...+.+|.+.++....+.++|....+.+||++|++.+..+  +..+++.+|++|+
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~i~   78 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL--GVAFYRGADCCVL   78 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH--HHHHhcCCCEEEE
Confidence            58999999999999999999999887777677777777777888876677889999999888887  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      |||++++.+++....|...+...... ...++|+++|+||+|+.. .....+..+.+++..+..+++++||++| |++++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            99999999999998888877655431 112689999999999984 3334667778888887667999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      ++.+.+.+.+
T Consensus       159 ~~~i~~~~~~  168 (172)
T cd01862         159 FETIARKALE  168 (172)
T ss_pred             HHHHHHHHHh
Confidence            9999987764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.89  E-value=1e-22  Score=190.42  Aligned_cols=155  Identities=12%  Similarity=0.124  Sum_probs=114.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +||+++|.+|||||||++++..+.+....|++.....   .+....+.+.+|||||++.+...+..+++++|++|+|||+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~   77 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE---EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence            5899999999999999999988887654444322221   2334578899999999999988999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-Hh-ccCCeEEEeCcccCCCchHHHH
Q 005908           93 NQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QF-REIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      +++.+++.+.+.|...++. ...++|++||+||+|+.+...   ..+....+.. .. .....++++||++|.||+++|+
T Consensus        78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~  154 (159)
T cd04150          78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence            9999999988645555443 224689999999999965321   1122222211 11 1112478999999999999999


Q ss_pred             HHHH
Q 005908          170 YAQK  173 (670)
Q Consensus       170 ~i~~  173 (670)
                      ++.+
T Consensus       155 ~l~~  158 (159)
T cd04150         155 WLSN  158 (159)
T ss_pred             HHhc
Confidence            8853

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.89  E-value=1.3e-22  Score=192.20  Aligned_cols=160  Identities=28%  Similarity=0.427  Sum_probs=128.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+++|++|||||||+++|++..+... .++...............+.+.+|||||++++.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            6899999999999999999999988544 343332333334445667889999999999888888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc---------chhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT---------SLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      ++++.++.....+|...+....+++|+++|+||+|+.......         ...+....+...++. .+++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA-IGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC-eEEEEeecCCCC
Confidence            9999999998888999888776789999999999987654320         123344556666653 379999999999


Q ss_pred             CchHHHHHHHH
Q 005908          163 QVPDVFYYAQK  173 (670)
Q Consensus       163 gi~~l~~~i~~  173 (670)
                      |++++|+.+++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.7e-24  Score=184.48  Aligned_cols=160  Identities=18%  Similarity=0.271  Sum_probs=133.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCccc---------CCceeEEEEeCCCCccchhhhHHHh
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFY---------PDRVPVTIIDTSSSLENKGKLNEEL   80 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~---------~~~~~~~i~Dt~G~~~~~~~~~~~~   80 (670)
                      -+|.+.+|++||||||++.+++.++|... .+++.-..+ +.+.+.         ...+.+++|||+|+++|.+++..++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            46888999999999999999999998877 444333333 222221         1246789999999999999999999


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      ++|-+++++||+++.+||-++.+ |+..++.  ++.+.-||++|||+|+.+.+.+  .++....++.+++  .||||+||
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~V--s~~qa~~La~kyg--lPYfETSA  163 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVV--SEDQAAALADKYG--LPYFETSA  163 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhh--hHHHHHHHHHHhC--CCeeeecc
Confidence            99999999999999999999996 9999976  4678889999999999998887  5566788999998  48999999


Q ss_pred             ccCCCchHHHHHHHHHHc
Q 005908          159 TTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~  176 (670)
                      -+|.||++..+.+...+.
T Consensus       164 ~tg~Nv~kave~LldlvM  181 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVM  181 (219)
T ss_pred             ccCcCHHHHHHHHHHHHH
Confidence            999999998887777654

>cd01862 Rab7 Rab7 subfamily

Probab=99.89  E-value=2.8e-22  Score=190.10  Aligned_cols=162  Identities=21%  Similarity=0.266  Sum_probs=126.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||++++.+..+.....++.+...  ....+....+.+.+|||||++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999987665433322221  22344455678899999999988888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |++++.+++.+. .|...+....     .++|+++|+||+|+..++..  ..+....+....+. .+++++||++|.|++
T Consensus        81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  156 (172)
T cd01862          81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGN-IPYFETSAKEAINVE  156 (172)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC-ceEEEEECCCCCCHH
Confidence            999999998886 4777664432     27999999999999854433  23445566666653 479999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 005908          166 DVFYYAQKAVLHP  178 (670)
Q Consensus       166 ~l~~~i~~~~~~~  178 (670)
                      ++|+.+.+.+...
T Consensus       157 ~l~~~i~~~~~~~  169 (172)
T cd01862         157 QAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877643

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.89  E-value=3.2e-22  Score=187.99  Aligned_cols=159  Identities=21%  Similarity=0.331  Sum_probs=126.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC-CCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   91 (670)
                      +||+++|++|||||||+++++...+.....++ ..........+...+.+.+|||||+..+......+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999998887764443 33333334455567889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ++++.+++.+.. |...+...  ..++|+++|+||+|+......  .......+.+.++  .+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~  155 (164)
T cd04139          81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQV--SSEEAANLARQWG--VPYVETSAKTRQNVEKAFY  155 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEeeCCCCCCHHHHHH
Confidence            999999999986 55555443  348999999999999764333  2233455666665  3799999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      .+.+.+.
T Consensus       156 ~l~~~~~  162 (164)
T cd04139         156 DLVREIR  162 (164)
T ss_pred             HHHHHHH
Confidence            9987653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04158 ARD1 ARD1 subfamily

Probab=99.89  E-value=2.2e-22  Score=190.23  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      ||+++|.+|||||||+++|.+..+....|+ .+....  .+...++.+.+|||||+.++...+..+++++|++++|||++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T-~~~~~~--~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s   77 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPT-IGFNVE--TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS   77 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCc-CceeEE--EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence            689999999999999999999877553333 222111  34456789999999999988888999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHH-hc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc----cCCeEEEeCcccCCCchHH
Q 005908           94 QQSTLSRLSSYWLPELR-RL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----EIETCVECSATTMIQVPDV  167 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~-~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~~~gi~~l  167 (670)
                      ++.+++++.. |+..+. .. ..+.|++||+||+|+...  + .. +.+..+.....    ....+++|||++|.||+++
T Consensus        78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--L-SV-EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--C-CH-HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            9999999886 555553 32 246899999999999643  2 22 22333332111    1125889999999999999


Q ss_pred             HHHHHHHHcCC
Q 005908          168 FYYAQKAVLHP  178 (670)
Q Consensus       168 ~~~i~~~~~~~  178 (670)
                      |+++.+.+...
T Consensus       153 f~~l~~~~~~~  163 (169)
T cd04158         153 LDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHhhc
Confidence            99998876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.89  E-value=2.5e-22  Score=190.71  Aligned_cols=156  Identities=19%  Similarity=0.383  Sum_probs=129.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||++++.++.+...+.+|..+.+. ..+..++....+.+||++|++.+..+  +..+++++|++++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~a~~~i~   77 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS-VVVLVDGKPVRLQLCDTAGQDEFDKL--RPLCYPDTDVFLL   77 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCEEEEEEEEECCCChhhccc--cccccCCCcEEEE
Confidence            58999999999999999999998888777777654443 45666765678889999999888887  6678899999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCcEE
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~  569 (670)
                      |||++++.+|+.+. .|+..+.....    +.|+++|+||+|+...             ....+++..+++..+..++++
T Consensus        78 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e  153 (173)
T cd04130          78 CFSVVNPSSFQNISEKWIPEIRKHNP----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE  153 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence            99999999999885 68877775432    6899999999998642             223667888999999867999


Q ss_pred             eecccC-ChHHHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRIIW  586 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~  586 (670)
                      +||++| |++++|+.++-
T Consensus       154 ~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         154 CSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             EeCCCCCCHHHHHHHHHh
Confidence            999999 99999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.89  E-value=3.3e-22  Score=191.09  Aligned_cols=162  Identities=14%  Similarity=0.151  Sum_probs=120.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||++++..+.+....|++ +....  .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~-~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTI-GFNVE--TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCcc-ccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            45799999999999999999999888776544433 22221  2344678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCchH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD  166 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~~  166 (670)
                      ||++++.+++.....+.+.++. ...++|++||+||.|+.+....   .+....+... .. ....++++||++|.||++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            9999999999887655555443 2247899999999998653221   1111111110 10 011467999999999999


Q ss_pred             HHHHHHHHHcC
Q 005908          167 VFYYAQKAVLH  177 (670)
Q Consensus       167 l~~~i~~~~~~  177 (670)
                      +|+++.+.+.+
T Consensus       169 ~~~~l~~~i~~  179 (182)
T PTZ00133        169 GLDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>PLN03118 Rab family protein; Provisional

Probab=99.89  E-value=5e-22  Score=194.84  Aligned_cols=165  Identities=20%  Similarity=0.303  Sum_probs=135.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|++|||||||+++|++..+. .+.+|.+.++....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~   88 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL--TSSYYRNAQG   88 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhcCCE
Confidence            45699999999999999999999998774 34567777776677777766678889999999998887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          501 TIFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      +++|||++++.+|+.+.. |...+..+....  +.|+++|+||+|+...+.. .++...++..+++. ++++||++| |+
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~v  165 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQ--DCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTRENV  165 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999876 555555443322  5899999999999764433 56677788888765 999999999 99


Q ss_pred             HHHHHHHHHHHhCC
Q 005908          578 NNVFSRIIWAAEHP  591 (670)
Q Consensus       578 ~~l~~~l~~~~~~~  591 (670)
                      +++|+.|.+.+...
T Consensus       166 ~~l~~~l~~~~~~~  179 (211)
T PLN03118        166 EQCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988653

>cd04135 Tc10 TC10 subfamily

Probab=99.89  E-value=2.7e-22  Score=190.69  Aligned_cols=158  Identities=24%  Similarity=0.419  Sum_probs=130.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|.++.+...+.+|....+. ..+..++....+.+||++|++.+..+  ...+++.+|++++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~il   77 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDVFLI   77 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--ccccCCCCCEEEE
Confidence            58999999999999999999999987777677665443 34566655566779999999888877  6678899999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEE
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (670)
                      |||++++.+|+.+. .|...+.....    +.|+++|+||+|+.+..             ...++++.+++.++..++++
T Consensus        78 v~~~~~~~s~~~~~~~~~~~l~~~~~----~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  153 (174)
T cd04135          78 CFSVVNPASFQNVKEEWVPELKEYAP----NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE  153 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999886 57777765422    69999999999986532             22567788888898767999


Q ss_pred             eecccC-ChHHHHHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~  588 (670)
                      +||++| |++++|+.+++.+
T Consensus       154 ~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         154 CSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             ecCCcCCCHHHHHHHHHHHh
Confidence            999999 9999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04123 Rab21 Rab21 subfamily

Probab=99.89  E-value=4.9e-22  Score=186.26  Aligned_cols=158  Identities=19%  Similarity=0.309  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|++..+.....++.....  .........+.+.+|||||++.+...++.+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            6999999999999999999999887665333222222  22333345678999999999988888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.+++.+.. |...++... .++|+++|+||+|+......  ..+....+.+.++  .+++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~gi~~~~~  155 (162)
T cd04123          81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQRVV--SKSEAEEYAKSVG--AKHFETSAKTGKGIEELFL  155 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence            9999999999874 888886653 37899999999999865544  2344455666655  3689999999999999999


Q ss_pred             HHHHHH
Q 005908          170 YAQKAV  175 (670)
Q Consensus       170 ~i~~~~  175 (670)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04123         156 SLAKRM  161 (162)
T ss_pred             HHHHHh
Confidence            998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.89  E-value=1.9e-22  Score=189.46  Aligned_cols=154  Identities=19%  Similarity=0.231  Sum_probs=119.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC
Q 005908           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ   94 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~   94 (670)
                      |+++|++|||||||+++|.++.+...+.++.+...  ..+...++++.+|||||++++..++..+++++|++|+|||+++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~   79 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD   79 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence            79999999999999999999887666444333322  2345668899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch--hhhhhHHHHHhccCCeEEEeCccc------CCCchH
Q 005908           95 QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATT------MIQVPD  166 (670)
Q Consensus        95 ~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SA~~------~~gi~~  166 (670)
                      +.++..... |+..+....+++|+++|+||+|+...+.+...  ......++++.+  ..+++|||++      ++||++
T Consensus        80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR--WILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc--eEEEEeeecCCCChhHHHHHHH
Confidence            999998875 66666544468999999999999766543111  112344444433  3688888888      999999


Q ss_pred             HHHHHHH
Q 005908          167 VFYYAQK  173 (670)
Q Consensus       167 l~~~i~~  173 (670)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04123 Rab21 Rab21 subfamily

Probab=99.89  E-value=1e-21  Score=184.07  Aligned_cols=159  Identities=19%  Similarity=0.354  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+|+|++..+...+.++++..+....+.+.+....+.+||++|++.+..+  +..+++.+|++++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~   78 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL--GPIYYRDADGAIL   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh--hHHHhccCCEEEE
Confidence            58999999999999999999999887766667766666666766655567889999999888887  7778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |+|++++.+++.+..|+..+......   ++|+++|+||+|+..... ..+...++++..+.. ++++||++| |+++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~~~  154 (162)
T cd04123          79 VYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEELF  154 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999998876543   589999999999985433 356677777777766 899999999 999999


Q ss_pred             HHHHHHH
Q 005908          582 SRIIWAA  588 (670)
Q Consensus       582 ~~l~~~~  588 (670)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04123         155 LSLAKRM  161 (162)
T ss_pred             HHHHHHh
Confidence            9998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=99.88  E-value=6.8e-22  Score=185.30  Aligned_cols=156  Identities=21%  Similarity=0.287  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|.+..+.....++.+...  ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            6899999999999999999999887665443333322  22334455688999999999988888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |++++.+++.+.. |...+.+..  .+.|+++|+||+|+.... .  ..+....+....+  .+++++||++|.|+++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~  154 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENRE-V--TREEGLKFARKHN--MLFIETSAKTRDGVQQAF  154 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCcccccc-c--CHHHHHHHHHHcC--CEEEEEecCCCCCHHHHH
Confidence            9999999999885 888887653  579999999999997332 2  2234556666654  379999999999999999


Q ss_pred             HHHHHH
Q 005908          169 YYAQKA  174 (670)
Q Consensus       169 ~~i~~~  174 (670)
                      +.+.+.
T Consensus       155 ~~~~~~  160 (161)
T cd01863         155 EELVEK  160 (161)
T ss_pred             HHHHHh
Confidence            998765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.8e-23  Score=180.86  Aligned_cols=165  Identities=13%  Similarity=0.234  Sum_probs=139.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC--C-------CceEEEEEecCChhhHhhhhch
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--G-------GNKKTLILQEIPEEGVKKILSN  491 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~--g-------~~~~~~i~d~~g~~~~~~~~~~  491 (670)
                      .+-+|...+|++||||||++.++..+.|...-..|.+.++..+.+-..  |       ...-+.+|||+|+++++++  +
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL--T   84 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL--T   84 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH--H
Confidence            345789999999999999999999999987776777776664433221  1       1234568999999999999  8


Q ss_pred             HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEe
Q 005908          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v  570 (670)
                      ..++++|-+++++||.++..||-+++.|+.++..+.--.  ++-||+++||+||.+.++. ..++.+++.++++| ||++
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfET  161 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFET  161 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeee
Confidence            999999999999999999999999999999987665444  6889999999999987655 78899999999998 9999


Q ss_pred             ecccC-ChHHHHHHHHHHHhC
Q 005908          571 SMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ||-+| ||++.++.+...+.+
T Consensus       162 SA~tg~Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  162 SACTGTNVEKAVELLLDLVMK  182 (219)
T ss_pred             ccccCcCHHHHHHHHHHHHHH
Confidence            99999 999988888777653

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.88  E-value=1e-23  Score=176.87  Aligned_cols=156  Identities=21%  Similarity=0.287  Sum_probs=133.4

Q ss_pred             EEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        17 ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      ++|++++|||.|+-|+..+.|...  .+++.-.++ +-++.+..++++++|||+|+++|.+.+..++++||+.+++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999999987776544  444443444 45567778999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHH
Q 005908           94 QQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~  172 (670)
                      ++.||++.+. |+.++.++.. .+.++++|||+|+..++.+  ..+..+.+++.++  .|+.|+||++|.||+-.|-.|.
T Consensus        82 nkasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~er~v--~~ddg~kla~~y~--ipfmetsaktg~nvd~af~~ia  156 (192)
T KOG0083|consen   82 NKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHERAV--KRDDGEKLAEAYG--IPFMETSAKTGFNVDLAFLAIA  156 (192)
T ss_pred             cchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchhhcc--ccchHHHHHHHHC--CCceeccccccccHhHHHHHHH
Confidence            9999999996 9999988753 6778999999999887776  4566788999998  4899999999999999999998


Q ss_pred             HHHcC
Q 005908          173 KAVLH  177 (670)
Q Consensus       173 ~~~~~  177 (670)
                      +.+.+
T Consensus       157 ~~l~k  161 (192)
T KOG0083|consen  157 EELKK  161 (192)
T ss_pred             HHHHH
Confidence            87753

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.88  E-value=1.6e-21  Score=183.24  Aligned_cols=160  Identities=24%  Similarity=0.428  Sum_probs=134.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||++++++..+...+.+++...+. .....++....+.+||++|++.+..+  ...+++.+|++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i~   77 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAI--RDNYHRSGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHH--HHHHhhcCCEEEE
Confidence            58999999999999999999999888777777765544 44556656678889999999888887  7789999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |+|++++.+|.....|+..+.......  ++|+++|+||+|+... .........+++.++.+ ++++||++| |++++|
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~  154 (164)
T cd04139          78 VFSITDMESFTATAEFREQILRVKDDD--NVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEKAF  154 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHHHH
Confidence            999999999999999998888764433  6999999999999763 33456667778888765 999999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      +.+.+.+.
T Consensus       155 ~~l~~~~~  162 (164)
T cd04139         155 YDLVREIR  162 (164)
T ss_pred             HHHHHHHH
Confidence            99988764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.88  E-value=4.9e-22  Score=189.95  Aligned_cols=163  Identities=25%  Similarity=0.325  Sum_probs=140.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-CCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ..+||+++|.+|||||+|..+++.+.|...+.+ +...++....+++..+.+.|+||+|++++..+...+++.+|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            568999999999999999999999999999544 4455667777888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHH-HhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQSTLSRLSSYWLPEL-RRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l-~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |+++++.||+.+.. +...+ +... ..+|+++||||+|+...+.+  ..+....++..++.  +|+|+||+.+.||+++
T Consensus        82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V--~~eeg~~la~~~~~--~f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQV--SEEEGKALARSWGC--AFIETSAKLNYNVDEV  156 (196)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhcccc--CHHHHHHHHHhcCC--cEEEeeccCCcCHHHH
Confidence            99999999999996 55555 3333 46899999999999988887  44556777888873  6999999999999999


Q ss_pred             HHHHHHHHcCC
Q 005908          168 FYYAQKAVLHP  178 (670)
Q Consensus       168 ~~~i~~~~~~~  178 (670)
                      |..+.+.+..+
T Consensus       157 F~~L~r~~~~~  167 (196)
T KOG0395|consen  157 FYELVREIRLP  167 (196)
T ss_pred             HHHHHHHHHhh
Confidence            99999987653

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.8e-22  Score=169.86  Aligned_cols=163  Identities=23%  Similarity=0.316  Sum_probs=139.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .-+|.+|+|+-|||||.|+.+|...+|..+-|.+.+...  .-+++.+.+++++||||+|+++|.....+++++|.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            458999999999999999999999999888665444322  234667889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||++.+.++..+.. |+...+.. +|+..++++|||.|+..++.+ ..++ .+.++.+.+-  .++++||++|.||++.
T Consensus        90 vyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~qrdv-~yee-ak~faeengl--~fle~saktg~nveda  164 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQRDV-TYEE-AKEFAEENGL--MFLEASAKTGQNVEDA  164 (215)
T ss_pred             EEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhcccC-cHHH-HHHHHhhcCe--EEEEecccccCcHHHH
Confidence            999999999999986 88888765 578889999999999999888 5544 5777777763  6999999999999999


Q ss_pred             HHHHHHHHcCC
Q 005908          168 FYYAQKAVLHP  178 (670)
Q Consensus       168 ~~~i~~~~~~~  178 (670)
                      |-+..+.+..+
T Consensus       165 fle~akkiyqn  175 (215)
T KOG0097|consen  165 FLETAKKIYQN  175 (215)
T ss_pred             HHHHHHHHHHh
Confidence            98888877643

>cd04154 Arl2 Arl2 subfamily

Probab=99.88  E-value=9.7e-22  Score=186.64  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=116.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ....+||+++|++|||||||+++|.+..+....++ .+.....  +..+++.+.+|||||++.+...+..+++.+|++++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t-~g~~~~~--~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPT-LGFQIKT--LEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCc-cccceEE--EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            34578999999999999999999998765433333 2222222  22346889999999999888888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH-Hh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh---ccCCeEEEeCcccCCC
Q 005908           89 TYACNQQSTLSRLSSYWLPEL-RR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---REIETCVECSATTMIQ  163 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l-~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~g  163 (670)
                      |||++++.+++.... |+..+ +. ...++|+++|+||+|+.+...    .+.+..+.+..   ....+++++||++|.|
T Consensus        88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGALS----EEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCCC----HHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            999999999998875 55444 32 235899999999999975432    12223332211   1123799999999999


Q ss_pred             chHHHHHHHH
Q 005908          164 VPDVFYYAQK  173 (670)
Q Consensus       164 i~~l~~~i~~  173 (670)
                      ++++|+++..
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999998763

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.88  E-value=7.7e-22  Score=185.83  Aligned_cols=159  Identities=23%  Similarity=0.396  Sum_probs=128.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH-hhhhchHhhcccccEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIF  503 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ad~vll  503 (670)
                      ||+++|++|||||||+++++++.+...+.+++...+. ..+.+.+....+.+||++|++.+ ...  ...+++.+|++++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~i~   77 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTIDGEQVSLEILDTAGQQQADTEQ--LERSIRWADGFVL   77 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEECCEEEEEEEEECCCCcccccch--HHHHHHhCCEEEE
Confidence            5899999999999999999998887777677655443 44566656667889999998742 233  5678899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC--ChHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK--DLNN  579 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g--~v~~  579 (670)
                      |||++++.||+.+..|+..+..... ..  +.|+++|+||+|+...+ ...++...+++.++.+ ++++||++|  |+++
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~~  154 (165)
T cd04146          78 VYSITDRSSFDEISQLKQLIREIKKRDR--EIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVHS  154 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHHH
Confidence            9999999999999999988877543 22  69999999999986543 3366778888888864 999999998  6999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.+++.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999988653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.88  E-value=4.8e-21  Score=188.55  Aligned_cols=169  Identities=14%  Similarity=0.238  Sum_probs=133.5

Q ss_pred             CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (670)
Q Consensus         5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (670)
                      +.+.....+||+++|++|||||||+++++.+.+...+.++.+...  .......+.+.+.+|||+|++.+...+..+++.
T Consensus         2 ~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~   81 (215)
T PTZ00132          2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIK   81 (215)
T ss_pred             ccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhcc
Confidence            346677789999999999999999999988887666444444333  222335667899999999999888888899999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      ++++++|||+++..++..+. .|+..+.....++|+++|+||+|+.+.. + . .+. ..+....+  ..++++||++|.
T Consensus        82 ~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~-~-~~~-~~~~~~~~--~~~~e~Sa~~~~  154 (215)
T PTZ00132         82 GQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDRQ-V-K-ARQ-ITFHRKKN--LQYYDISAKSNY  154 (215)
T ss_pred             CCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCcccc-C-C-HHH-HHHHHHcC--CEEEEEeCCCCC
Confidence            99999999999999999998 4888887766789999999999986432 2 1 122 23444443  369999999999


Q ss_pred             CchHHHHHHHHHHcCCCC
Q 005908          163 QVPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~~~  180 (670)
                      |++++|.++.+.+.....
T Consensus       155 ~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        155 NFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             CHHHHHHHHHHHHhhccc
Confidence            999999999998875543

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.88  E-value=6.8e-22  Score=189.33  Aligned_cols=162  Identities=12%  Similarity=0.165  Sum_probs=120.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      +.+||+++|++|||||||++++..+.+....|+...... ..... ...++.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999888765544322221 22222 2357899999999999888889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH--Hhcc--CCeEEEeCcccCC
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFRE--IETCVECSATTMI  162 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~SA~~~~  162 (670)
                      |||++++.+++.+.. |+..+...  ..++|+++|+||+|+......    +....+..  ....  ..++++|||++|.
T Consensus        82 v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  156 (183)
T cd04152          82 VVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNALSV----SEVEKLLALHELSASTPWHVQPACAIIGE  156 (183)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccccCCH----HHHHHHhCccccCCCCceEEEEeecccCC
Confidence            999999999888774 66555432  247999999999998643211    11222221  1111  1258899999999


Q ss_pred             CchHHHHHHHHHHcC
Q 005908          163 QVPDVFYYAQKAVLH  177 (670)
Q Consensus       163 gi~~l~~~i~~~~~~  177 (670)
                      ||+++++++.+.+..
T Consensus       157 gi~~l~~~l~~~l~~  171 (183)
T cd04152         157 GLQEGLEKLYEMILK  171 (183)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988753

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.88  E-value=1.9e-21  Score=185.07  Aligned_cols=158  Identities=22%  Similarity=0.340  Sum_probs=129.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      .||+|+|++|||||||+++|.++.+...+.+|....+. ..+...+....+.+||++|++.+..+  ...++.++|++++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   78 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDVILM   78 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhc--cccccCCCCEEEE
Confidence            58999999999999999999999988777777776554 34566655667889999999888877  5668899999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEE
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (670)
                      |||++++++|+.+. .|...+.....    +.|+++|+||+|+.+..             ......+++++.++..++++
T Consensus        79 v~~~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~  154 (175)
T cd01870          79 CFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYME  154 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEE
Confidence            99999999998885 57777765432    68999999999986532             11456777888887767999


Q ss_pred             eecccC-ChHHHHHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~  588 (670)
                      +||++| |++++|+++.+.+
T Consensus       155 ~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         155 CSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             eccccCcCHHHHHHHHHHHh
Confidence            999999 9999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04114 Rab30 Rab30 subfamily

Probab=99.88  E-value=2.4e-21  Score=183.14  Aligned_cols=161  Identities=19%  Similarity=0.259  Sum_probs=125.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+||+++|++|||||||++++.++.+.....++.+...  ....+.+..+.+.+|||||+..+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999998776654333222111  22334455578999999999988888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|||+++..+++.+. .|...++... .+.|+++|+||+|+.+.+.+  ..+....+.....  .++++|||++|.|+++
T Consensus        85 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~  159 (169)
T cd04114          85 LTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAERREV--SQQRAEEFSDAQD--MYYLETSAKESDNVEK  159 (169)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHH
Confidence            999999999999887 4888887644 37999999999999766554  2233344444443  3799999999999999


Q ss_pred             HHHHHHHHH
Q 005908          167 VFYYAQKAV  175 (670)
Q Consensus       167 l~~~i~~~~  175 (670)
                      +|+.+.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04149 Arf6 Arf6 subfamily

Probab=99.87  E-value=1.8e-21  Score=183.57  Aligned_cols=155  Identities=19%  Similarity=0.154  Sum_probs=118.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|.+|||||||+++|..+.+.. +.||++.++.  .+..  ....+.+||++|++.+..+  +..+++++|++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~a~~i   80 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL   80 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence            45899999999999999999999877653 3466665443  3332  4577889999999998887  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC---C-CCcEEeecccC-C
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG---I-EPPIPVSMKSK-D  576 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~---~-~~~~~vSA~~g-~  576 (670)
                      ++|||++++.+|.....|+.++.......  ++|+++|+||+|+.+. ...++++++.+...   . .+++++||++| |
T Consensus        81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g  157 (168)
T cd04149          81 IFVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG  157 (168)
T ss_pred             EEEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCccC-CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC
Confidence            99999999999998888887775432212  5899999999998752 23444444432111   1 14799999999 9


Q ss_pred             hHHHHHHHHH
Q 005908          577 LNNVFSRIIW  586 (670)
Q Consensus       577 v~~l~~~l~~  586 (670)
                      ++++|++|.+
T Consensus       158 v~~~~~~l~~  167 (168)
T cd04149         158 LYEGLTWLSS  167 (168)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.87  E-value=1.5e-21  Score=186.64  Aligned_cols=166  Identities=23%  Similarity=0.387  Sum_probs=146.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||+|..+|.+..|...++||+.+.+. +.+.++|+...+.|+|++|++++..+  ...+++.+|+++
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~-k~~~v~~~~~~l~ilDt~g~~~~~~~--~~~~~~~~~gF~   79 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYR-KELTVDGEVCMLEILDTAGQEEFSAM--RDLYIRNGDGFL   79 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCccccce-EEEEECCEEEEEEEEcCCCcccChHH--HHHhhccCcEEE
Confidence            589999999999999999999999999999999986554 55666677888889999999888888  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +||+++++.||+.+..+...+.+.....  ..|+++||||+|+.. +.+..++++.++..++++ ++++||+.+ |++++
T Consensus        80 lVysitd~~SF~~~~~l~~~I~r~~~~~--~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen   80 LVYSITDRSSFEEAKQLREQILRVKGRD--DVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVDEV  156 (196)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHHHH
Confidence            9999999999999999999996554444  689999999999998 455588899999999998 999999999 99999


Q ss_pred             HHHHHHHHhCCCCC
Q 005908          581 FSRIIWAAEHPHLN  594 (670)
Q Consensus       581 ~~~l~~~~~~~~~~  594 (670)
                      |..+.+.+..+...
T Consensus       157 F~~L~r~~~~~~~~  170 (196)
T KOG0395|consen  157 FYELVREIRLPREG  170 (196)
T ss_pred             HHHHHHHHHhhhcc
Confidence            99999988764443

>cd04114 Rab30 Rab30 subfamily

Probab=99.87  E-value=5.9e-21  Score=180.50  Aligned_cols=161  Identities=21%  Similarity=0.328  Sum_probs=132.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|++|||||||++++.++.+...+.+|.+.++....+...|....+.+||++|++.+...  ...+++.+|++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~   83 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI--TQSYYRSANAL   83 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence            4589999999999999999999988777666667666666666777755667889999999888876  67889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+.. ....+.+.+.... +++++||++| |+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~  159 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDM-YYLETSAKESDNVEK  159 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEeeCCCCCCHHH
Confidence            9999999999999999999888765432   5899999999999754433 4445666666664 4999999999 9999


Q ss_pred             HHHHHHHHH
Q 005908          580 VFSRIIWAA  588 (670)
Q Consensus       580 l~~~l~~~~  588 (670)
                      +|+.+.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.87  E-value=2.6e-21  Score=180.78  Aligned_cols=154  Identities=12%  Similarity=0.126  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      ||+++|++|||||||++++..+.+....|+..... .  .+...++.+.+|||||+..+...+..+++.+|++|+|+|++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~   77 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNV-E--TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST   77 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCe-E--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence            69999999999999999998877765444322221 1  23345789999999999999888999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCchHHHHH
Q 005908           94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      ++.++....+.|...++.. ..++|+++|+||+|+.+....   .+....+... .. ...++++|||++|.||+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  154 (158)
T cd04151          78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW  154 (158)
T ss_pred             CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence            9988877665555555432 247999999999998653211   1111111111 00 0126999999999999999998


Q ss_pred             HHH
Q 005908          171 AQK  173 (670)
Q Consensus       171 i~~  173 (670)
                      +.+
T Consensus       155 l~~  157 (158)
T cd04151         155 LVN  157 (158)
T ss_pred             Hhc
Confidence            864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.87  E-value=2.8e-21  Score=184.78  Aligned_cols=163  Identities=20%  Similarity=0.213  Sum_probs=126.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ..||+|+|++|||||||++++.+..+.....++. ............++.+.+|||||+.++......++..+|++++||
T Consensus         1 ~~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           1 QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            3689999999999999999999988866543333 223333344445678899999999998888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |+++..+++.+...|...++.. ..+.|+++|+||+|+...+.. . .+....+...++  .+++++||++|.|+.++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~  156 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV-S-TEEGKELAESWG--AAFLESSARENENVEEAFE  156 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc-C-HHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence            9999999999986444444433 247899999999999765443 2 233455566665  3799999999999999999


Q ss_pred             HHHHHHcCC
Q 005908          170 YAQKAVLHP  178 (670)
Q Consensus       170 ~i~~~~~~~  178 (670)
                      ++.+.+...
T Consensus       157 ~l~~~~~~~  165 (180)
T cd04137         157 LLIEEIEKV  165 (180)
T ss_pred             HHHHHHHHh
Confidence            999877543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.87  E-value=2.5e-21  Score=187.87  Aligned_cols=160  Identities=21%  Similarity=0.264  Sum_probs=122.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      ||+++|++|||||||+++|+++.+...+.++..... ....+....+.+.+|||+|+..+..++..+++.+|++|+|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            699999999999999999999988776444332222 2233334457899999999999888888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCC-CCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGD-HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      +++.+++.+.. |...+....  .++|+++|+||+|+... ..+ ......+.....++  .+++++||++|.||+++|+
T Consensus        81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v-~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQV-PAKDALSTVELDWN--CGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccc-cHHHHHHHHHhhcC--CcEEEecCCCCCCHHHHHH
Confidence            99999999874 777665532  47999999999999763 333 22222222212222  3689999999999999999


Q ss_pred             HHHHHHcC
Q 005908          170 YAQKAVLH  177 (670)
Q Consensus       170 ~i~~~~~~  177 (670)
                      ++.+.+..
T Consensus       157 ~l~~~~~~  164 (198)
T cd04147         157 ELLRQANL  164 (198)
T ss_pred             HHHHHhhc
Confidence            99987753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00876 Ras Ras family

Probab=99.87  E-value=2.2e-21  Score=181.39  Aligned_cols=156  Identities=20%  Similarity=0.340  Sum_probs=124.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      ||+|+|++|||||||++++++..+.....++..... ....+....+.+.+||+||+..+......+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            699999999999999999998887776544433222 2233334468899999999998888889999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      ++++++.++.. |...+....  ..+|+++|+||+|+......  ..+....+...++  .+++++||++|.|++++|+.
T Consensus        81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG--CPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccccee--cHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHH
Confidence            99999999886 655554433  48999999999999875444  2344566666665  47999999999999999999


Q ss_pred             HHHH
Q 005908          171 AQKA  174 (670)
Q Consensus       171 i~~~  174 (670)
                      +.+.
T Consensus       156 l~~~  159 (160)
T cd00876         156 LVRE  159 (160)
T ss_pred             HHhh
Confidence            8864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.87  E-value=3.3e-21  Score=183.96  Aligned_cols=157  Identities=20%  Similarity=0.226  Sum_probs=122.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+++|.+|||||||++++..+++.. +.||++..+  ..++.  ....+.+||++|++.+..+  +..+++++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~--~~~~~~~a~~   87 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQG   87 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCE
Confidence            345899999999999999999999877753 456666443  33443  4567889999999999888  8889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~  573 (670)
                      +|+|||+++++++.....++..+.......  ++|++||+||+|+.+..    ..+++.+.+++.       .++++||+
T Consensus        88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~--~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~  161 (181)
T PLN00223         88 LIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHhcCHhhC--CCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCC
Confidence            999999999999988887776664322112  68999999999987632    234555555543       24579999


Q ss_pred             cC-ChHHHHHHHHHHHhC
Q 005908          574 SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~  590 (670)
                      +| |+.++|++|.+.+..
T Consensus       162 ~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        162 SGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            99 999999999988764

>cd04157 Arl6 Arl6 subfamily

Probab=99.87  E-value=1.4e-21  Score=183.37  Aligned_cols=153  Identities=18%  Similarity=0.199  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +|+++|++|||||||+++|.+..+ ...+.++.+....  .+...++.+.+|||||++++...+..+++.+|++|+|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~   78 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS   78 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence            589999999999999999998763 4333333332221  2335678999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH--H-hccCCeEEEeCcccCCCch
Q 005908           93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--Q-FREIETCVECSATTMIQVP  165 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~SA~~~~gi~  165 (670)
                      +++.++..... |+..+...    ..++|+++|+||+|+......    +.+.....  . .....++++|||++|.|++
T Consensus        79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALTA----VKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCCH----HHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            99999887764 55555332    247999999999999754221    11111111  1 0111258999999999999


Q ss_pred             HHHHHHHH
Q 005908          166 DVFYYAQK  173 (670)
Q Consensus       166 ~l~~~i~~  173 (670)
                      ++|+++.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99998754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.87  E-value=2e-21  Score=184.61  Aligned_cols=158  Identities=18%  Similarity=0.215  Sum_probs=117.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||++++..+.+....|+.... .  ..+...++.+.+|||||++.+...+..+++++|++++|
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~-~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN-V--EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc-e--EEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            35689999999999999999999988876544433222 2  13334578999999999998888899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCchH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD  166 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~~  166 (670)
                      +|+++++++....+.|...++.. ..++|+++++||+|+.....   .++..+.+... .. ...++++|||++|.||++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999999988876555555432 24799999999999865321   12211222100 00 112689999999999999


Q ss_pred             HHHHHHH
Q 005908          167 VFYYAQK  173 (670)
Q Consensus       167 l~~~i~~  173 (670)
                      +|+++.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9998864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00154 Rab Rab family

Probab=99.87  E-value=4.7e-21  Score=178.51  Aligned_cols=156  Identities=23%  Similarity=0.440  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+|++.+..+...+.+|.+.++....+..++....+.+||++|+..+...  ...+++++|++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~ii~   78 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI--TPSYYRGAHGAIL   78 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH--HHHHhcCCCEEEE
Confidence            58999999999999999999999998887778887777777777765677889999999888877  7888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |+|+++++++..+..|+..+......   +.|+++|+||+|+. ......++..+++...+.+ ++++||++| |+++++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~  154 (159)
T cd00154          79 VYDITNRESFENLDKWLKELKEYAPE---NIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEELF  154 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHHHH
Confidence            99999999999999999988877532   59999999999997 4444577788888887665 999999999 999999


Q ss_pred             HHHH
Q 005908          582 SRII  585 (670)
Q Consensus       582 ~~l~  585 (670)
                      +.|.
T Consensus       155 ~~i~  158 (159)
T cd00154         155 QSLA  158 (159)
T ss_pred             HHHh
Confidence            9886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.87  E-value=4.6e-21  Score=182.16  Aligned_cols=154  Identities=21%  Similarity=0.227  Sum_probs=118.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|.+|||||||++++..+.+. .+.||++..+.  .+..  ....+.+||++|++.+..+  +..+++++|++
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~--~~~~~~~ad~i   84 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPL--WRHYYTNTQGL   84 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHH--HHHHhCCCCEE
Confidence            4589999999999999999999877764 34567665443  2333  3467889999999998887  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeeccc
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS  574 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~~  574 (670)
                      |+|||++++.+++....|+..+.......  +.|+++|+||+|+.+.. .   .+++.+.++..       .++++||++
T Consensus        85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~-~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~  158 (175)
T smart00177       85 IFVVDSNDRDRIDEAREELHRMLNEDELR--DAVILVFANKQDLPDAM-K---AAEITEKLGLHSIRDRNWYIQPTCATS  158 (175)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhhCHhhc--CCcEEEEEeCcCcccCC-C---HHHHHHHhCccccCCCcEEEEEeeCCC
Confidence            99999999999999888888775432212  58999999999997532 1   22333333322       256899999


Q ss_pred             C-ChHHHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIWAA  588 (670)
Q Consensus       575 g-~v~~l~~~l~~~~  588 (670)
                      | |++++|++|.+.+
T Consensus       159 g~gv~e~~~~l~~~~  173 (175)
T smart00177      159 GDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            9 9999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.87  E-value=2.8e-21  Score=180.59  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||++++..+.+. .+.||++..+.  .+..  ....+.+||++|++++..+  +..+++++|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~~i~   73 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF   73 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEEEE
Confidence            48999999999999999999887776 35577665443  3332  4577889999999988887  7889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH----HhCCCCcEEeecccC-ChH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ----ELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~vSA~~g-~v~  578 (670)
                      |||++++.+|.....++..+.......  ++|+++|+||+|+.+.....+....+..    ..++ .++++||++| |++
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~  150 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLY  150 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHH
Confidence            999999999999988887775432222  5899999999999753221122222211    0011 3679999999 999


Q ss_pred             HHHHHHHH
Q 005908          579 NVFSRIIW  586 (670)
Q Consensus       579 ~l~~~l~~  586 (670)
                      ++|++|.+
T Consensus       151 ~~~~~l~~  158 (159)
T cd04150         151 EGLDWLSN  158 (159)
T ss_pred             HHHHHHhc
Confidence            99998864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04129 Rho2 Rho2 subfamily

Probab=99.87  E-value=5.9e-21  Score=183.54  Aligned_cols=166  Identities=22%  Similarity=0.341  Sum_probs=132.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      .||+|+|++|||||||+++|..+.+...+.+|....+. ..+...+....+.+||++|++.+...  ....+..+|++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~a~~~ll   78 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERL--RPLSYSKAHVILI   78 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhcccc--chhhcCCCCEEEE
Confidence            48999999999999999999988877666666655443 34555655567789999999877765  4557899999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-----------cccHHHHHHHHHHhCCCCcEEee
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-----------TMAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      |||+++.++|+.+. .|+..+.....    +.|+++|+||+|+.+.           ....+....+++.++..+++++|
T Consensus        79 v~~i~~~~s~~~~~~~~~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S  154 (187)
T cd04129          79 GFAVDTPDSLENVRTKWIEEVRRYCP----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS  154 (187)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc
Confidence            99999999999986 58888876543    5999999999998542           12246678888999876799999


Q ss_pred             cccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908          572 MKSK-DLNNVFSRIIWAAEHPHLNIP  596 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~~~~~~~~~~  596 (670)
                      |++| |++++|+.+.+.+..-+.+.|
T Consensus       155 a~~~~~v~~~f~~l~~~~~~~~~~~~  180 (187)
T cd04129         155 ALTGEGVDDVFEAATRAALLVRKSEP  180 (187)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccCccc
Confidence            9999 999999999988765554433

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00154 Rab Rab family

Probab=99.87  E-value=3.6e-21  Score=179.31  Aligned_cols=155  Identities=23%  Similarity=0.325  Sum_probs=124.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||++++.+..+.....++.+...  .........+.+.+||+||+..+......+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988776333333222  22333345688999999999988888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++++++.+.. |+..+.... .++|+++|+||+|+......  ..+....+....+  .+++++||++|.|++++++
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~  155 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKENG--LLFFETSAKTGENVEELFQ  155 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Confidence            9999999999885 888887764 57999999999999744443  3344566666644  4799999999999999999


Q ss_pred             HHH
Q 005908          170 YAQ  172 (670)
Q Consensus       170 ~i~  172 (670)
                      ++.
T Consensus       156 ~i~  158 (159)
T cd00154         156 SLA  158 (159)
T ss_pred             HHh
Confidence            875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01893 Miro1 Miro1 subfamily

Probab=99.86  E-value=8.6e-21  Score=178.83  Aligned_cols=159  Identities=23%  Similarity=0.312  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+++|.++.+...+. ++...+. ......+....+.+||++|.+.+...  ...+++.+|++++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~il   76 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEIT-IPADVTPERVPTTIVDTSSRPQDRAN--LAAEIRKANVICL   76 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCC-CcccceE-eeeeecCCeEEEEEEeCCCchhhhHH--HhhhcccCCEEEE
Confidence            489999999999999999999998866543 3333333 22344556678889999998777665  5667899999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC-CCCcEEeecccC-Ch
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG-IEPPIPVSMKSK-DL  577 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~vSA~~g-~v  577 (670)
                      |||++++.+|+.+. .|+..+.....    +.|+++|+||+|+.+....   .+....+++.+. ..+++++||++| |+
T Consensus        77 v~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  152 (166)
T cd01893          77 VYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV  152 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence            99999999999875 57777766543    6999999999999775432   233444444443 346999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|+.+.+.+.+
T Consensus       153 ~~lf~~~~~~~~~  165 (166)
T cd01893         153 SEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999987753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.86  E-value=8.6e-21  Score=184.15  Aligned_cols=160  Identities=22%  Similarity=0.314  Sum_probs=128.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+++|.+|||||||+++|+++.+...+.+|+.. .....+.+.|....+.+||++|+..+..+  ...++..+|++++|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~ad~vilv   77 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAM--RKLSIQNSDAFALV   77 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHH--HHHHhhcCCEEEEE
Confidence            6899999999999999999999888776666653 44455666755567889999999888877  67788999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-c-ccHHHHHHHHH-HhCCCCcEEeecccC-ChHHH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-T-MAVQDSARVTQ-ELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~-~~~~~~~~~~~-~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ||++++.+|+.+..|+..+.......  ++|+++|+||+|+... . ...+...+... ..+. +++++||++| |++++
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l  154 (198)
T cd04147          78 YAVDDPESFEEVERLREEILEVKEDK--FVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSAKDNENVLEV  154 (198)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecCCCCCCHHHH
Confidence            99999999999999998888765543  6999999999999753 2 22323333332 2333 4899999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      |+++++.+..
T Consensus       155 ~~~l~~~~~~  164 (198)
T cd04147         155 FKELLRQANL  164 (198)
T ss_pred             HHHHHHHhhc
Confidence            9999998753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.86  E-value=1.5e-20  Score=179.75  Aligned_cols=165  Identities=18%  Similarity=0.311  Sum_probs=134.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      .||+++|.+|||||||++++.+..+...+.+|+...+ ...+..++....+.+||++|++++..+  ...++..+|++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~   78 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSIL--PQKYSIGIHGYIL   78 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHH--HHHHHhhCCEEEE
Confidence            5899999999999999999999888776667776544 344556655566789999999888877  6778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||+++..+++.+..|+..+.+.....  +.|+++|+||+|+...+.. ......+++.++.+ ++++||++| |+.+++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~  155 (180)
T cd04137          79 VYSVTSRKSFEVVKVIYDKILDMLGKE--SVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEEAF  155 (180)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence            999999999999999988887754333  6899999999999754332 44567777777754 999999999 999999


Q ss_pred             HHHHHHHhCCCCC
Q 005908          582 SRIIWAAEHPHLN  594 (670)
Q Consensus       582 ~~l~~~~~~~~~~  594 (670)
                      +++.+.+......
T Consensus       156 ~~l~~~~~~~~~~  168 (180)
T cd04137         156 ELLIEEIEKVENP  168 (180)
T ss_pred             HHHHHHHHHhcCC
Confidence            9999988655443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=99.86  E-value=1.1e-20  Score=176.55  Aligned_cols=157  Identities=24%  Similarity=0.395  Sum_probs=131.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+|+|++|||||||++++++..+...+.+++.. .....+...+....+.+||++|++.+..+  ....++.+|++++|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v   77 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTIVVDGETYTLDILDTAGQEEFSAM--RDLYIRQGDGFILV   77 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHHhcCCEEEEE
Confidence            6899999999999999999998877777677663 44455666644567889999999888877  67888999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      ||+++++++..+..|...+.......  +.|+++|+||+|+.+. ....+.+.++++.++. +++++||++| |++++++
T Consensus        78 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~l~~  154 (160)
T cd00876          78 YSITDRESFEEIKGYREQILRVKDDE--DIPIVLVGNKCDLENERQVSKEEGKALAKEWGC-PFIETSAKDNINIDEVFK  154 (160)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCcccccceecHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHH
Confidence            99999999999999998887765433  6999999999999873 3346778888888775 4999999999 9999999


Q ss_pred             HHHHH
Q 005908          583 RIIWA  587 (670)
Q Consensus       583 ~l~~~  587 (670)
                      +|.+.
T Consensus       155 ~l~~~  159 (160)
T cd00876         155 LLVRE  159 (160)
T ss_pred             HHHhh
Confidence            99875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.86  E-value=2.8e-21  Score=180.90  Aligned_cols=155  Identities=18%  Similarity=0.213  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      +|+++|++|||||||+++|.+..+....|+.... ...... ...+.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~   78 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN-VEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS   78 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc-eEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence            6899999999999999999999876554443222 111122 34688999999999988888889999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHH-HHhc--cCCeEEEeCcccCCCchHHHH
Q 005908           94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR--EIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ++.++......+...++.. ..+.|+++|+||+|+.....   ..+....+. ..+.  ...++++|||++|.||+++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  155 (160)
T cd04156          79 DEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFR  155 (160)
T ss_pred             cHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHH
Confidence            9998888875343333332 24899999999999864321   111111110 1111  112589999999999999999


Q ss_pred             HHHH
Q 005908          170 YAQK  173 (670)
Q Consensus       170 ~i~~  173 (670)
                      +|.+
T Consensus       156 ~i~~  159 (160)
T cd04156         156 KLAS  159 (160)
T ss_pred             HHhc
Confidence            8854

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04158 ARD1 ARD1 subfamily

Probab=99.86  E-value=7.1e-21  Score=179.93  Aligned_cols=155  Identities=19%  Similarity=0.175  Sum_probs=120.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+++|.+|||||||+++|.+..+.. +.+|++..+.  .++.  ....+.+||++|++.+..+  +..+++.+|++++|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~--~~~~~~~ad~ii~V   73 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPL--WKHYYLNTQAVVFV   73 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchH--HHHHhccCCEEEEE
Confidence            68999999999999999999987653 4566654442  3333  4567889999999888777  77889999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-----CCcEEeecccC-ChH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK-DLN  578 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSA~~g-~v~  578 (670)
                      +|++++.++.....|+..+.+.....  +.|+++|+||+|+... ...++++++++..+.     .+++++||++| |++
T Consensus        74 ~D~s~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  150 (169)
T cd04158          74 VDSSHRDRVSEAHSELAKLLTEKELR--DALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY  150 (169)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcChhhC--CCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence            99999999999999988887543222  5899999999999752 344555555543221     14789999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|++|.+.+.
T Consensus       151 ~~f~~l~~~~~  161 (169)
T cd04158         151 EGLDWLSRQLV  161 (169)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=1e-20  Score=180.81  Aligned_cols=156  Identities=21%  Similarity=0.212  Sum_probs=119.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+++|++|||||||++++..+.+.. +.||++..+.  .++.  ....+.+||++|++.++.+  +..+++++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~   87 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPL--WRHYYQNTNG   87 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence            345899999999999999999998877754 4567664443  3443  4567889999999988887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~  573 (670)
                      +|+|+|++++.++.....++..+.......  ++|+++|+||.|+.+.. ..+   ++...++..       +++++||+
T Consensus        88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~-~~~---~i~~~l~~~~~~~~~~~~~~~Sa~  161 (182)
T PTZ00133         88 LIFVVDSNDRERIGDAREELERMLSEDELR--DAVLLVFANKQDLPNAM-STT---EVTEKLGLHSVRQRNWYIQGCCAT  161 (182)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhCHhhc--CCCEEEEEeCCCCCCCC-CHH---HHHHHhCCCcccCCcEEEEeeeCC
Confidence            999999999999998887777664432112  58999999999986522 122   233333332       35689999


Q ss_pred             cC-ChHHHHHHHHHHHh
Q 005908          574 SK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~  589 (670)
                      +| |++++|++|.+.+.
T Consensus       162 tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        162 TAQGLYEGLDWLSANIK  178 (182)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99 99999999988764

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.86  E-value=9.4e-21  Score=181.42  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=123.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      .+||+++|.+|||||||++++.+..+... .+|.+.......+.. ++....+.+||++|++.+..+  +..+++++|++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~i   79 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL--WKSYTRCTDGI   79 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH--HHHHhccCCEE
Confidence            48999999999999999999998887644 466554444333333 334567889999999888887  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-----CCcEEeecccC-
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK-  575 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSA~~g-  575 (670)
                      ++|+|++++.++.....|+.++.......  ++|+++|+||+|+.+. ......+.+......     .+++++||++| 
T Consensus        80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  156 (183)
T cd04152          80 VFVVDSVDVERMEEAKTELHKITRFSENQ--GVPVLVLANKQDLPNA-LSVSEVEKLLALHELSASTPWHVQPACAIIGE  156 (183)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhhhhcC--CCcEEEEEECcCcccc-CCHHHHHHHhCccccCCCCceEEEEeecccCC
Confidence            99999999988888888888777654333  6999999999998652 223334433321111     24789999999 


Q ss_pred             ChHHHHHHHHHHHhC
Q 005908          576 DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~  590 (670)
                      |+++++++|.+.+..
T Consensus       157 gi~~l~~~l~~~l~~  171 (183)
T cd04152         157 GLQEGLEKLYEMILK  171 (183)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988753

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.86  E-value=3.5e-20  Score=182.40  Aligned_cols=163  Identities=17%  Similarity=0.279  Sum_probs=137.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+++|++|||||||+++++.+.+...+.+|.+..+....+...++...+.+||++|++.+..+  ...++..++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~--~~~~~~~~~   83 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL--RDGYYIKGQ   83 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHhccCC
Confidence            345699999999999999999999988888777788887777666766767788999999999888877  677889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      ++++|||++++.+|..+..|+..+.....    +.|+++|+||+|+.+..... ....+++..++. ++++||++| |++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~i~lv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~e~Sa~~~~~v~  157 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE----NIPIVLVGNKVDVKDRQVKA-RQITFHRKKNLQ-YYDISAKSNYNFE  157 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccCccccCCH-HHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999999876643    69999999999987643333 334566777765 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|.+|++.+..
T Consensus       158 ~~f~~ia~~l~~  169 (215)
T PTZ00132        158 KPFLWLARRLTN  169 (215)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.86  E-value=3.8e-21  Score=181.28  Aligned_cols=156  Identities=20%  Similarity=0.267  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      +|+++|.+|||||||+++|.+. +...+.++.+....  .+...++.+.+|||||+..+..++..+++++|++|+|||++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s   77 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS   77 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence            5899999999999999999977 54443333333332  34456789999999999999899999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhh--hhhHHHHHhccCCeEEEeCcccC------CC
Q 005908           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEE--VMGPIMQQFREIETCVECSATTM------IQ  163 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SA~~~------~g  163 (670)
                      +..+++.+.. |+..+...  ..++|+++|+||+|+.+........+  .+..++++.+....+++|||++|      .|
T Consensus        78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g  156 (167)
T cd04161          78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS  156 (167)
T ss_pred             chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence            9999998875 66666443  24799999999999977543201111  11222222222236788999998      89


Q ss_pred             chHHHHHHHH
Q 005908          164 VPDVFYYAQK  173 (670)
Q Consensus       164 i~~l~~~i~~  173 (670)
                      +.+.|+|+..
T Consensus       157 ~~~~~~wl~~  166 (167)
T cd04161         157 IVEGLRWLLA  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00157 Rho Rho (Ras homology) family

Probab=99.86  E-value=8.1e-21  Score=179.85  Aligned_cols=156  Identities=20%  Similarity=0.357  Sum_probs=126.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|+++.+...+.++...... ..+..++....+.+||++|++.+...  ....++.+|++++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~~~~i~   77 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRL--RPLSYPNTDVFLI   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--chhhcCCCCEEEE
Confidence            58999999999999999999999886666566654443 44566666778899999999887766  5667899999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc------------cHHHHHHHHHHhCCCCcEEe
Q 005908          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------AVQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~v  570 (670)
                      |||++++.+|.... .|+..+.....    +.|+++|+||+|+.+...            ..+...+++..++..+++++
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  153 (171)
T cd00157          78 CFSVDSPSSFENVKTKWIPEIRHYCP----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC  153 (171)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence            99999998988765 46666665543    699999999999976542            25567778888887569999


Q ss_pred             ecccC-ChHHHHHHHHH
Q 005908          571 SMKSK-DLNNVFSRIIW  586 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~  586 (670)
                      ||++| |++++++.+++
T Consensus       154 Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         154 SALTQEGVKEVFEEAIR  170 (171)
T ss_pred             ecCCCCCHHHHHHHHhh
Confidence            99999 99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.85  E-value=4.2e-21  Score=180.41  Aligned_cols=151  Identities=23%  Similarity=0.270  Sum_probs=119.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      +|+++|.+|||||||+++|.++.+...+.||.+...    +.++++...+.+||++|++.+..+  +..+++++|++++|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii~V   74 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKY--WKRYLSGSQGLIFV   74 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHH--HHHHHhhCCEEEEE
Confidence            489999999999999999999887766667776432    223445678889999999988887  78899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccH-----HHHHHHHHHhCCCCcEEeeccc-----
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-----QDSARVTQELGIEPPIPVSMKS-----  574 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~vSA~~-----  574 (670)
                      ||++++.++.....|+..+.....    ++|+++|+||+|+.......     ..+..++++.++. ++++||++     
T Consensus        75 ~D~t~~~s~~~~~~~l~~~~~~~~----~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s~~  149 (164)
T cd04162          75 VDSADSERLPLARQELHQLLQHPP----DLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGSPS  149 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCCC----CCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCChh
Confidence            999999999988888888765432    69999999999987644322     1234455555554 88999998     


Q ss_pred             -C-ChHHHHHHHHH
Q 005908          575 -K-DLNNVFSRIIW  586 (670)
Q Consensus       575 -g-~v~~l~~~l~~  586 (670)
                       + ||.++|+.++.
T Consensus       150 ~~~~v~~~~~~~~~  163 (164)
T cd04162         150 RMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHHhc
Confidence             8 99999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04154 Arl2 Arl2 subfamily

Probab=99.85  E-value=1.9e-20  Score=177.77  Aligned_cols=156  Identities=22%  Similarity=0.260  Sum_probs=118.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+++|++|||||||+++|.+..+. .+.+|.+  +....+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~--~~~~~~~~d~   84 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPY--WRNYFESTDA   84 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence            45689999999999999999999988553 3345555  333444444  467789999999888877  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh----CCCCcEEeecccC-
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----GIEPPIPVSMKSK-  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g-  575 (670)
                      +++|+|++++.+|.....|+..+.......  ++|+++|+||+|+.+.. ..++++++....    ...+++++||++| 
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            999999999999998888887775432222  69999999999997633 333444443221    1125999999999 


Q ss_pred             ChHHHHHHHHH
Q 005908          576 DLNNVFSRIIW  586 (670)
Q Consensus       576 ~v~~l~~~l~~  586 (670)
                      |++++|+++..
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.85  E-value=1.5e-20  Score=180.17  Aligned_cols=159  Identities=13%  Similarity=0.184  Sum_probs=116.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+.++|+++|.+|||||||++++.++.+....|+. +.+.  ..+..+++++.+|||||+..+...+..+++++|++++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQ-HPTS--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc-ccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            56799999999999999999999998765433332 2222  12334578899999999998888899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh---------ccCCeEEEeCcc
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---------REIETCVECSAT  159 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~SA~  159 (670)
                      +|++++.++......+...++. ...++|+++|+||+|+....   +.++..+.+....         .....+++|||+
T Consensus        92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~  168 (184)
T smart00178       92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV  168 (184)
T ss_pred             EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence            9999999998887544444432 22479999999999986432   1222111110000         012359999999


Q ss_pred             cCCCchHHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQKA  174 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~  174 (670)
                      +|.|++++++++.+.
T Consensus       169 ~~~g~~~~~~wl~~~  183 (184)
T smart00178      169 RRMGYGEGFKWLSQY  183 (184)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00879 Sar1 Sar1 subfamily

Probab=99.85  E-value=1.6e-20  Score=181.28  Aligned_cols=158  Identities=15%  Similarity=0.265  Sum_probs=116.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+..||+++|++|||||||++++.++.+....|+. +...  ..+...++.+.+|||||+..+...+..+++++|++++|
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~-~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTL-HPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc-Ccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            56799999999999999999999988775433332 2222  22334568899999999988888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--------------ccCCeEE
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--------------REIETCV  154 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  154 (670)
                      +|+++..+++.....+...++.. ..+.|+++|+||+|+...  +  ..+.+.......              ....+++
T Consensus        94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--V--SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--c--CHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999887775333333322 247999999999998642  2  123333333221              1112589


Q ss_pred             EeCcccCCCchHHHHHHHHH
Q 005908          155 ECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~  174 (670)
                      +|||++|.|++++|+++.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.85  E-value=5.3e-22  Score=175.34  Aligned_cols=161  Identities=17%  Similarity=0.327  Sum_probs=147.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+|++|+|..+|||||++++++.+-|...+..|++.++..+.+.+.+......+||++|++++..+  +..|+++|.+.
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaI--tkAyyrgaqa~   96 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI--TKAYYRGAQAS   96 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHH--HHHHhccccce
Confidence            4599999999999999999999999999999999999888887877777777788999999999999  99999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++||..+|+.||+....|+..+.....    .+|.++|-||+|+.+..+. ..+++.+++.+... ++.+|++.. ||..
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~e~~----~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~NV~~  171 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQKETE----RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFNVMH  171 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHHHhc----cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhhhHH
Confidence            999999999999999999999988776    6999999999999986655 77888999999987 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|.++++.+.
T Consensus       172 vF~YLaeK~~  181 (246)
T KOG4252|consen  172 VFAYLAEKLT  181 (246)
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.85  E-value=1.6e-20  Score=181.05  Aligned_cols=148  Identities=22%  Similarity=0.233  Sum_probs=115.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcc-----cCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-----YPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      +||+++|++|||||||+++|+++.|...+.++.+...  ....+     ....+.+.||||+|++++..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999998877554443222  11222     1356889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCCCCCCCccchhh---hhhH
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRL--------------------EIKVPIIVAGCKLDLRGDHNATSLEE---VMGP  142 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~--------------------~~~~pvilv~NK~Dl~~~~~~~~~~~---~~~~  142 (670)
                      +|+|||++++.|++++. .|+..+...                    ..++|++|||||+|+.+.+.+ +...   ....
T Consensus        81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~-~~~~~~~~~~~  158 (202)
T cd04102          81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES-SGNLVLTARGF  158 (202)
T ss_pred             EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc-chHHHhhHhhh
Confidence            99999999999999998 599988652                    236899999999999776544 2222   2345


Q ss_pred             HHHHhccCCeEEEeCcccCCCc
Q 005908          143 IMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus       143 ~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      ++++++.  +.++.++++...+
T Consensus       159 ia~~~~~--~~i~~~c~~~~~~  178 (202)
T cd04102         159 VAEQGNA--EEINLNCTNGRLL  178 (202)
T ss_pred             HHHhcCC--ceEEEecCCcccc
Confidence            6777773  6888888866544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.85  E-value=8.5e-22  Score=174.05  Aligned_cols=169  Identities=16%  Similarity=0.226  Sum_probs=145.4

Q ss_pred             CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (670)
Q Consensus         4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (670)
                      |........+|++|+|..+|||||++.|++.+-|..++..+.+...  ....+....+++.+|||+|+++|...+..+++
T Consensus        12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            4445566789999999999999999999999999888666555544  23445566788999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +|.+.++||+.+|+.||+...+ |.+.+.+....+|.++|-||+|+.++..+  .....+.+++.+..  .++.+|++..
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds~~--~~~evE~lak~l~~--RlyRtSvked  166 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDSQM--DKGEVEGLAKKLHK--RLYRTSVKED  166 (246)
T ss_pred             cccceEEEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhhhc--chHHHHHHHHHhhh--hhhhhhhhhh
Confidence            9999999999999999999996 99999998889999999999999988776  45566778887763  6999999999


Q ss_pred             CCchHHHHHHHHHHcC
Q 005908          162 IQVPDVFYYAQKAVLH  177 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~  177 (670)
                      .||..+|..++..+..
T Consensus       167 ~NV~~vF~YLaeK~~q  182 (246)
T KOG4252|consen  167 FNVMHVFAYLAEKLTQ  182 (246)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            9999999999887653

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.85  E-value=2.5e-20  Score=174.13  Aligned_cols=154  Identities=14%  Similarity=0.185  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      ||+++|.+|||||||++++++..+....++ .+....  .+......+.+|||||+..+...+..+++.+|++++|||++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~   77 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPT-IGFNVE--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS   77 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-cCcceE--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence            699999999999999999999885433333 222221  23334688999999999998888999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH--hccCCeEEEeCcccCCCchHHHHH
Q 005908           94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      ++.++......+...++.. ..+.|+++|+||+|+......   ++....+...  .....+++++||++|.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  154 (158)
T cd00878          78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDW  154 (158)
T ss_pred             CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHH
Confidence            9999998876333333422 348999999999998764321   1211221111  112237999999999999999998


Q ss_pred             HHH
Q 005908          171 AQK  173 (670)
Q Consensus       171 i~~  173 (670)
                      +..
T Consensus       155 l~~  157 (158)
T cd00878         155 LLQ  157 (158)
T ss_pred             Hhh
Confidence            864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04157 Arl6 Arl6 subfamily

Probab=99.85  E-value=3.2e-20  Score=174.11  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +|+++|++|||||||+++|.+..+ ...+.+|.+...  ..+..  +...+.+||++|++.+..+  +..+++.+|++++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ii~   74 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK--GNLSFTAFDMSGQGKYRGL--WEHYYKNIQGIIF   74 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE--CCEEEEEEECCCCHhhHHH--HHHHHccCCEEEE
Confidence            589999999999999999998764 344446665432  23332  4567889999999988887  7888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH--H-hCCC-CcEEeecccC-ChH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ--E-LGIE-PPIPVSMKSK-DLN  578 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~-~~~~-~~~~vSA~~g-~v~  578 (670)
                      |+|++++.++.....|+..+.+.......++|+++|+||+|+.+... ..+..+...  . ...+ +++++||++| |++
T Consensus        75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            99999999998888888777653211112699999999999976322 222221111  0 1111 3799999999 999


Q ss_pred             HHHHHHHH
Q 005908          579 NVFSRIIW  586 (670)
Q Consensus       579 ~l~~~l~~  586 (670)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.84  E-value=4.4e-20  Score=175.38  Aligned_cols=155  Identities=21%  Similarity=0.218  Sum_probs=115.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|.+|||||||++++.++.+.. +.+|.+..+.  .+..  ....+.+||++|++.+...  +..+++.+|++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~v   86 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSS--WNTYYTNTDAV   86 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHH--HHHHhhcCCEE
Confidence            35899999999999999999999887765 3466665443  2333  3467888999999888777  77889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH----HHhCCCCcEEeecccC-C
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g-~  576 (670)
                      ++|+|++++.++.....++..+.+.....  ++|+++++||+|+.......+..+.+.    +..++ +++++||++| |
T Consensus        87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~--~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~g  163 (174)
T cd04153          87 ILVIDSTDRERLPLTKEELYKMLAHEDLR--KAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW-HIQGCCALTGEG  163 (174)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce-EEEecccCCCCC
Confidence            99999999988888887777765443222  699999999999876221111122221    11122 4899999999 9


Q ss_pred             hHHHHHHHHH
Q 005908          577 LNNVFSRIIW  586 (670)
Q Consensus       577 v~~l~~~l~~  586 (670)
                      ++++|++|.+
T Consensus       164 i~e~~~~l~~  173 (174)
T cd04153         164 LPEGLDWIAS  173 (174)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.84  E-value=6.2e-20  Score=176.87  Aligned_cols=149  Identities=19%  Similarity=0.148  Sum_probs=122.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-----CCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-----GGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-----g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      +||+++|.++||||||+++|+++.+...+.+|++.++..+.+.++     +....+.+||++|++.+..+  +..+++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l--~~~~yr~a   78 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST--RAVFYNQV   78 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH--HHHHhCcC
Confidence            489999999999999999999999988887888877777766654     34567889999999999988  78899999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcC----------------CCCCCCcEEEEEeCCCCCCCccc-----HHHHHH
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGE----------------DSGYGVPCLLIASKDDLKPYTMA-----VQDSAR  557 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~----------------~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~  557 (670)
                      |++|+|||++++.||+.+..|+.++.....                ....+.|++|||||+|+.+++..     ......
T Consensus        79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~  158 (202)
T cd04102          79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF  158 (202)
T ss_pred             CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence            999999999999999999999999976421                01126899999999999765422     234556


Q ss_pred             HHHHhCCCCcEEeecccC
Q 005908          558 VTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       558 ~~~~~~~~~~~~vSA~~g  575 (670)
                      ++++.+.+ .++.+++.+
T Consensus       159 ia~~~~~~-~i~~~c~~~  175 (202)
T cd04102         159 VAEQGNAE-EINLNCTNG  175 (202)
T ss_pred             HHHhcCCc-eEEEecCCc
Confidence            78888887 788888753

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.84  E-value=2.8e-20  Score=175.50  Aligned_cols=153  Identities=15%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC------CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVP------EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      +|+++|++|||||||+++|.+....      ....++.+...  ..+...+..+.+|||||+..+...+..+++.+|+++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v   78 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII   78 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            5899999999999999999864321      11111111111  123345789999999999998888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh----c-cCCeEEEeCccc
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----R-EIETCVECSATT  160 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~SA~~  160 (670)
                      +|+|+++..+++.... |+..+.+.  ..++|+++|+||+|+.....   ..+ +..+....    + ...+++++||++
T Consensus        79 ~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          79 YVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDALS---VEE-IKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccCCC---HHH-HHHHhccccccccCCceEEEEeeCCC
Confidence            9999999988888775 44444332  24799999999999865422   122 22222221    1 113799999999


Q ss_pred             CCCchHHHHHHHH
Q 005908          161 MIQVPDVFYYAQK  173 (670)
Q Consensus       161 ~~gi~~l~~~i~~  173 (670)
                      |.|+++++++|.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999998864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.83  E-value=7.2e-20  Score=171.38  Aligned_cols=152  Identities=24%  Similarity=0.312  Sum_probs=115.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      +|+++|++|||||||+++|.++.+... .+|.+..  ...+..+ +...+.+||++|++.+..+  +..++..+|++++|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~--~~~~~~~~~~iv~v   74 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTV--WKCYLENTDGLVYV   74 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHH--HHHHhccCCEEEEE
Confidence            589999999999999999999887643 4565533  3455555 5678889999999888777  67789999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH------HHhCCCCcEEeecccC-Ch
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT------QELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~vSA~~g-~v  577 (670)
                      +|++++.++.....|+..+.+.....  +.|+++|+||+|+.... ..+++....      ...+. +++++||++| |+
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv  150 (160)
T cd04156          75 VDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLPGAL-TAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGL  150 (160)
T ss_pred             EECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccccCc-CHHHHHHHcCCcccCCCCcE-EEEecccccCCCh
Confidence            99999988888888888776543222  69999999999986522 122222111      11112 4889999999 99


Q ss_pred             HHHHHHHHH
Q 005908          578 NNVFSRIIW  586 (670)
Q Consensus       578 ~~l~~~l~~  586 (670)
                      +++|++|.+
T Consensus       151 ~~~~~~i~~  159 (160)
T cd04156         151 AEAFRKLAS  159 (160)
T ss_pred             HHHHHHHhc
Confidence            999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK15494 era GTPase Era; Provisional

Probab=99.83  E-value=1.2e-19  Score=189.55  Aligned_cols=175  Identities=20%  Similarity=0.231  Sum_probs=119.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccc-hhhh-------HHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLEN-KGKL-------NEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-~~~~-------~~~   79 (670)
                      .+.++|+++|++|||||||+|+|++.++....+. ..+++  +...+..++..+.+|||||+.+. ..+.       ..+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k-~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPK-VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCC-CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            4567999999999999999999999886532121 11111  22334456678999999998532 2111       135


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++++|++++|+|.++  ++......|+..++..  +.|+++|+||+|+.+.    ...+ +............++++||+
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~----~~~~-~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK----YLND-IKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc----cHHH-HHHHHHhcCCCcEEEEEecc
Confidence            789999999999654  4555544577777665  6788899999998643    1222 23333333322469999999


Q ss_pred             cCCCchHHHHHHHHHHcCCCCCCCccccccccHHHH
Q 005908          160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCV  195 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  195 (670)
                      +|.|++++++++.+.+. +.+++|+.+.....+...
T Consensus       200 tg~gv~eL~~~L~~~l~-~~~~~~~~~~~td~~~~~  234 (339)
T PRK15494        200 SGKNIDGLLEYITSKAK-ISPWLYAEDDITDLPMRF  234 (339)
T ss_pred             CccCHHHHHHHHHHhCC-CCCCCCCCCCCCCCCHHH
Confidence            99999999999987654 456777777666554443

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=1.3e-19  Score=176.72  Aligned_cols=184  Identities=16%  Similarity=0.206  Sum_probs=131.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh-----Hhhh-hchHhhcc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-----VKKI-LSNKEALA  496 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-----~~~~-~~~~~~~~  496 (670)
                      .--|+|+|+||||||||+|+++|...+++++...+++..+.-+-+. +...+.++||+|-.+     .+.+ ......+.
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            3569999999999999999999999999998544445555555555 466777789988311     1111 12567889


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC
Q 005908          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      ++|+++||+|++++.. ......+..+...      +.|+++++||+|+...... ....+.+...+.+..++++||++|
T Consensus        85 dvDlilfvvd~~~~~~-~~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          85 DVDLILFVVDADEGWG-PGDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             cCcEEEEEEeccccCC-ccHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            9999999999998644 2334444555442      5899999999999886653 555666666677778999999999


Q ss_pred             -ChHHHHHHHHHHHhCCCCCCC-CCcccccHH-HHHHHhhhh
Q 005908          576 -DLNNVFSRIIWAAEHPHLNIP-ETETGRNRK-RYRHLVNSS  614 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~  614 (670)
                       |++.|.+.+...+..-...-| +..+..+.+ ...+++++.
T Consensus       158 ~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk  199 (298)
T COG1159         158 DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREK  199 (298)
T ss_pred             CCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHH
Confidence             999999999998855444444 444443333 444555443

>TIGR00436 era GTP-binding protein Era

Probab=99.83  E-value=2.1e-19  Score=182.61  Aligned_cols=179  Identities=16%  Similarity=0.174  Sum_probs=122.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhhH-----hhh-hchHhhcc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKI-LSNKEALA  496 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-----~~~-~~~~~~~~  496 (670)
                      +|+++|+||||||||+|+|++..+..+++  .||+.  .+..+... +...+.++||+|....     +.+ .....++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~--~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN--RISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC--cEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999998876665  34443  23334344 2345788999996321     111 11456789


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      .+|++++|+|+++..+..  ..+...+...      +.|+++|+||+|+.+..........++...++.+++++||++| 
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~  150 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGD  150 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence            999999999999886654  3344444432      6899999999999764433445556666666657999999999 


Q ss_pred             ChHHHHHHHHHHHhCCCCC-CCCCcccccHH-HHHHHhhhh
Q 005908          576 DLNNVFSRIIWAAEHPHLN-IPETETGRNRK-RYRHLVNSS  614 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~  614 (670)
                      |++++++.+.+.+...... +++.....+.+ ...+.+++.
T Consensus       151 gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~  191 (270)
T TIGR00436       151 NTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREK  191 (270)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence            9999999999988654443 33333333332 334444443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.83  E-value=1.1e-19  Score=171.52  Aligned_cols=154  Identities=20%  Similarity=0.180  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch---------hhhHHHhccC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELKRA   83 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~a   83 (670)
                      +|+++|++|||||||+|+|.+..+... .+.+.... ....+..+++++.+|||||+.+..         .........+
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL-FVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce-eEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            799999999999999999999876432 22211111 111233456899999999984211         0111112336


Q ss_pred             CEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           84 DAVVLTYACNQQSTL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        84 d~ii~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      |++|+|+|+++..++  +... .|+..++....++|+++|+||+|+...... .  + ...+... +. .++++|||++|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~--~-~~~~~~~-~~-~~~~~~Sa~~~  153 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFEDL-S--E-IEEEEEL-EG-EEVLKISTLTE  153 (168)
T ss_pred             CcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchhhH-H--H-HHHhhhh-cc-CceEEEEeccc
Confidence            899999999987653  4444 478888765568999999999999765433 1  1 2333332 22 36999999999


Q ss_pred             CCchHHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKAV  175 (670)
Q Consensus       162 ~gi~~l~~~i~~~~  175 (670)
                      .|++++++++.+.+
T Consensus       154 ~gi~~l~~~l~~~~  167 (168)
T cd01897         154 EGVDEVKNKACELL  167 (168)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.83  E-value=3.2e-20  Score=172.63  Aligned_cols=165  Identities=22%  Similarity=0.392  Sum_probs=145.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ..+|++|||+.++|||+|+..+..+.|...+.||.-+.+... +.+ +|....+-+|||+|+++|..+  +...+.++|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrl--RplsY~~tdv   79 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRL--RPLSYPQTDV   79 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccc--cccCCCCCCE
Confidence            358999999999999999999999999999999988766644 555 477788899999999999987  5679999999


Q ss_pred             EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  566 (670)
                      ++++|++.++.||+++ .+|+.++..+++    +.|+|+||+|.||.+.             ....++..++++++|...
T Consensus        80 fl~cfsv~~p~S~~nv~~kW~pEi~~~cp----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~  155 (198)
T KOG0393|consen   80 FLLCFSVVSPESFENVKSKWIPEIKHHCP----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVK  155 (198)
T ss_pred             EEEEEEcCChhhHHHHHhhhhHHHHhhCC----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcce
Confidence            9999999999999996 589999999986    7999999999999842             223788999999999888


Q ss_pred             cEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      |+++||++. |+.++|+..++.+..+..
T Consensus       156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  156 YLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999 999999999998876543

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.83  E-value=9.9e-20  Score=169.68  Aligned_cols=155  Identities=17%  Similarity=0.224  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      .|+|+|++|||||||+++|.+..+.....++.+....  .+..+.+.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            3899999999999999999999887764443332222  22334588999999999998888999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-H-hccCCeEEEeCcccCCCchHHHHH
Q 005908           94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-Q-FREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      +..++......+...++.. ..++|+++|+||+|+.+....   .+....+.. . .....+++++||++|.|+++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            9988887765344444321 247899999999998754322   111111110 0 111136899999999999999998


Q ss_pred             HHH
Q 005908          171 AQK  173 (670)
Q Consensus       171 i~~  173 (670)
                      +.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04151 Arl1 Arl1 subfamily

Probab=99.82  E-value=2.3e-19  Score=167.59  Aligned_cols=149  Identities=22%  Similarity=0.241  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+++|++|||||||++++..+.+.. +.+|++.++.  .++.  ....+.+||++|++.+..+  +..++..+|++++|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ii~v   73 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPY--WRCYYSNTDAIIYV   73 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHH--HHHHhcCCCEEEEE
Confidence            68999999999999999998877653 3456554432  3333  3467889999999888887  78889999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecccC-C
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK-D  576 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~~g-~  576 (670)
                      +|++++.++.....++..+.+.....  ++|+++|+||+|+.+... ..   ++.+.++.       .+++++||++| |
T Consensus        74 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~-~~---~i~~~~~~~~~~~~~~~~~~~Sa~~~~g  147 (158)
T cd04151          74 VDSTDRDRLGTAKEELHAMLEEEELK--GAVLLVFANKQDMPGALS-EA---EISEKLGLSELKDRTWSIFKTSAIKGEG  147 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhc--CCcEEEEEeCCCCCCCCC-HH---HHHHHhCccccCCCcEEEEEeeccCCCC
Confidence            99999888777666665544322212  699999999999975321 11   22222221       14999999999 9


Q ss_pred             hHHHHHHHHH
Q 005908          577 LNNVFSRIIW  586 (670)
Q Consensus       577 v~~l~~~l~~  586 (670)
                      ++++|++|++
T Consensus       148 i~~l~~~l~~  157 (158)
T cd04151         148 LDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHhc
Confidence            9999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00879 Sar1 Sar1 subfamily

Probab=99.82  E-value=3.8e-19  Score=171.56  Aligned_cols=157  Identities=20%  Similarity=0.239  Sum_probs=119.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+++|++|||||||++++.+..+. .+.+|.+...  ..+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~--~~~~~~~ad~   89 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRL--WKDYFPEVDG   89 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHH--HHHHhccCCE
Confidence            34689999999999999999999988764 3445554432  334444  356778999999888776  7788899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC---------------CC
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG---------------IE  565 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~---------------~~  565 (670)
                      +++|+|+++..++.....++..+.+.....  +.|+++|+||+|+.. ....++++.+.....               ..
T Consensus        90 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (190)
T cd00879          90 IVFLVDAADPERFQESKEELDSLLSDEELA--NVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRPI  166 (190)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHcCcccc--CCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCceeE
Confidence            999999999988988888888876543333  699999999999875 333445555443211               11


Q ss_pred             CcEEeecccC-ChHHHHHHHHHH
Q 005908          566 PPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       566 ~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      +++++||++| |++++|++|.+.
T Consensus       167 ~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         167 EVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEEeEecCCCChHHHHHHHHhh
Confidence            4899999999 999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01890 LepA LepA subfamily

Probab=99.82  E-value=2.2e-19  Score=171.42  Aligned_cols=155  Identities=19%  Similarity=0.178  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--C-----CCCCCCCC------CCeE----eCCcc---cCCceeEEEEeCCCCccch
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES--V-----PEKVPPVH------APTR----LPPDF---YPDRVPVTIIDTSSSLENK   73 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~--~-----~~~~~~~~------~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~   73 (670)
                      +|+++|++|||||||+++|++..  +     ...+.++.      +.+.    ....+   ...++.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998743  1     11111100      1111    11112   4567889999999999999


Q ss_pred             hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-Ce
Q 005908           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET  152 (670)
Q Consensus        74 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~  152 (670)
                      ..+..+++.+|++|+|||+++..++.... .|.... .  .++|+++|+||+|+.+..    ..+....+.+.++.. ..
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~-~--~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLAL-E--NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHH-H--cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCCCccc
Confidence            99999999999999999999877766654 244332 2  378999999999986432    222234455554421 24


Q ss_pred             EEEeCcccCCCchHHHHHHHHHHc
Q 005908          153 CVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       153 ~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ++++||++|.||+++|+++.+.+.
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhCC
Confidence            899999999999999999988753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.82  E-value=4.1e-19  Score=170.21  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=115.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..++|+++|.+|||||||++++.++.+... .||.+...  ..+..  +...+.+||++|++.++.+  +..+++++|+
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~--~~~~~~~ad~   87 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRL--WKDYFPEVNG   87 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccce--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence            3458999999999999999999999876543 34544322  23333  3467788999999888877  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--------------CCC
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--------------IEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------~~~  566 (670)
                      +++|+|++++.++.....++..+.+.....  ++|+++|+||+|+... ...+++   .+.++              ...
T Consensus        88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~-~~~~~i---~~~l~l~~~~~~~~~~~~~~~~  161 (184)
T smart00178       88 IVYLVDAYDKERFAESKRELDALLSDEELA--TVPFLILGNKIDAPYA-ASEDEL---RYALGLTNTTGSKGKVGVRPLE  161 (184)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCC-CCHHHH---HHHcCCCcccccccccCCceeE
Confidence            999999999988888888877765432222  6999999999998642 222222   22322              124


Q ss_pred             cEEeecccC-ChHHHHHHHHHH
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      ++++||++| |+++++++|.+.
T Consensus       162 i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      162 VFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEEeecccCCChHHHHHHHHhh
Confidence            899999999 999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR00436 era GTP-binding protein Era

Probab=99.82  E-value=4.1e-19  Score=180.57  Aligned_cols=169  Identities=18%  Similarity=0.189  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHhccC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRA   83 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~a   83 (670)
                      +|+++|+||||||||+|+|++.++.  ...++++.. .+......++..+.+|||||......        ....+++++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6999999999999999999998753  333333222 12222334456799999999764311        123567899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      |++++|+|+++..+.+   ..+...++..  ++|+++|+||+|+.....   ..+....+....+ ..+++++||++|.|
T Consensus        81 Dvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~v~~iSA~~g~g  151 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK---LLPLIDKYAILED-FKDIVPISALTGDN  151 (270)
T ss_pred             CEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH---HHHHHHHHHhhcC-CCceEEEecCCCCC
Confidence            9999999999877665   2466667665  799999999999964321   2222333333332 23699999999999


Q ss_pred             chHHHHHHHHHHcCCCCCCCccccccccHH
Q 005908          164 VPDVFYYAQKAVLHPTAPLFDHDEQTLKPR  193 (670)
Q Consensus       164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  193 (670)
                      ++++++.+.+.+ ++.++.|+.+.....+.
T Consensus       152 i~~L~~~l~~~l-~~~~~~~~~~~~t~~~~  180 (270)
T TIGR00436       152 TSFLAAFIEVHL-PEGPFRYPEDYVTDQPD  180 (270)
T ss_pred             HHHHHHHHHHhC-CCCCCCCCCcccCCCCH
Confidence            999999998776 44455666665554443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04155 Arl3 Arl3 subfamily

Probab=99.81  E-value=2.5e-19  Score=170.02  Aligned_cols=155  Identities=17%  Similarity=0.214  Sum_probs=113.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+.++|+++|++|||||||++++.+..+....++ .+....  .+...+..+.+|||||+..+...+..+++.+|++++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g~~~~--~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPT-QGFNIK--TVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CCcceE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            34579999999999999999999998766443332 222211  223346889999999998888888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------CCeEEEeCcccC
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM  161 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~  161 (670)
                      |+|+++..++......+...++.. ..++|+++++||+|+......       ..+...++.      ..+++++||++|
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA-------EEIAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH-------HHHHHHcCCcccCCCeEEEEEeECCCC
Confidence            999999888887765444444332 247999999999998654321       122222221      114789999999


Q ss_pred             CCchHHHHHHHH
Q 005908          162 IQVPDVFYYAQK  173 (670)
Q Consensus       162 ~gi~~l~~~i~~  173 (670)
                      +|++++|+++.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.81  E-value=3.4e-19  Score=179.24  Aligned_cols=147  Identities=20%  Similarity=0.213  Sum_probs=122.0

Q ss_pred             cccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-------------CceEEEEEecCChh
Q 005908          417 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------GNKKTLILQEIPEE  483 (670)
Q Consensus       417 ~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g-------------~~~~~~i~d~~g~~  483 (670)
                      +......+||+|+|..|||||||+++|+++.+...+.+|++.++.++.+.+++             ....+.|||++|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            34456679999999999999999999999998887778988877766666542             34568899999999


Q ss_pred             hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCC---------CCCCCcEEEEEeCCCCCCCc-----
Q 005908          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED---------SGYGVPCLLIASKDDLKPYT-----  549 (670)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~NK~Dl~~~~-----  549 (670)
                      .+..+  +..+++++|++|+|||++++.+|+.+..|+..+......         ...++|++||+||+||.+++     
T Consensus        95 rfrsL--~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~  172 (334)
T PLN00023         95 RYKDC--RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS  172 (334)
T ss_pred             hhhhh--hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence            99998  888999999999999999999999999999999876320         01258999999999997642     


Q ss_pred             --ccHHHHHHHHHHhCCC
Q 005908          550 --MAVQDSARVTQELGIE  565 (670)
Q Consensus       550 --~~~~~~~~~~~~~~~~  565 (670)
                        ...+++++++++.++.
T Consensus       173 s~~~~e~a~~~A~~~g~l  190 (334)
T PLN00023        173 SGNLVDAARQWVEKQGLL  190 (334)
T ss_pred             ccccHHHHHHHHHHcCCC
Confidence              1378899999998865

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.81  E-value=4.6e-19  Score=165.54  Aligned_cols=152  Identities=23%  Similarity=0.228  Sum_probs=114.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+++|.+|||||||++++++.... .+.+|.+...  ..+..  ....+.+||++|++.+...  +..+++.+|++++|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v   73 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPL--WKHYYENTNGIIFV   73 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEE--CCEEEEEEECCCChhhHHH--HHHHhccCCEEEEE
Confidence            6899999999999999999998743 2334544332  33333  3467888999999888877  77888999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh----CCCCcEEeecccC-ChHH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----GIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g-~v~~  579 (670)
                      ||++++.++.....++..+.......  +.|+++|+||+|+...... ++..+.....    ...+++++||++| |+++
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  150 (158)
T cd00878          74 VDSSDRERIEEAKEELHKLLNEEELK--GVPLLIFANKQDLPGALSV-SELIEKLGLEKILGRRWHIQPCSAVTGDGLDE  150 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEeeccCCccccCH-HHHHHhhChhhccCCcEEEEEeeCCCCCCHHH
Confidence            99999999999988888876654333  6999999999999864322 2222222211    1125999999999 9999


Q ss_pred             HHHHHHH
Q 005908          580 VFSRIIW  586 (670)
Q Consensus       580 l~~~l~~  586 (670)
                      +|+.|..
T Consensus       151 ~~~~l~~  157 (158)
T cd00878         151 GLDWLLQ  157 (158)
T ss_pred             HHHHHhh
Confidence            9999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.81  E-value=2.3e-19  Score=169.19  Aligned_cols=153  Identities=23%  Similarity=0.238  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      +|+++|.+|||||||+++|.+. +...+.+|.+..  ...+..  +...+.+||++|++.+..+  +..+++++|++++|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~a~~ii~V   73 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGI--WVNYYAEAHGLVFV   73 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHH--HHHHHcCCCEEEEE
Confidence            4899999999999999999987 555555676643  233443  3467889999999888887  78899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH-----HHHHHHhCCC-CcEEeecccC---
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-----ARVTQELGIE-PPIPVSMKSK---  575 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~-----~~~~~~~~~~-~~~~vSA~~g---  575 (670)
                      ||++++.+++.+..|+..+.......  ++|+++|+||+|+.......+..     +.++++.+.. +++++||++|   
T Consensus        74 ~D~s~~~s~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~  151 (167)
T cd04161          74 VDSSDDDRVQEVKEILRELLQHPRVS--GKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK  151 (167)
T ss_pred             EECCchhHHHHHHHHHHHHHcCcccc--CCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence            99999999999999998887653322  69999999999997744222222     2233222322 4788999995   


Q ss_pred             ----ChHHHHHHHHH
Q 005908          576 ----DLNNVFSRIIW  586 (670)
Q Consensus       576 ----~v~~l~~~l~~  586 (670)
                          |+.+.|++|.+
T Consensus       152 ~~~~g~~~~~~wl~~  166 (167)
T cd04161         152 KIDPSIVEGLRWLLA  166 (167)
T ss_pred             ccccCHHHHHHHHhc
Confidence                69999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG1159 Era GTPase [General function prediction only]

Probab=99.81  E-value=7.4e-19  Score=171.56  Aligned_cols=182  Identities=18%  Similarity=0.220  Sum_probs=129.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~   79 (670)
                      ++.-.|+|+|+||||||||+|++++.+....  .|.+ +...+...+..++..+.++||||...-...        ....
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT-TR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch-hhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            4556799999999999999999999995443  3331 122255666677889999999998654322        2267


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      +.++|+++||+|++..-.-.+  +..++.++..  +.|+++++||+|...+...  .....+.+..... +..++++||+
T Consensus        83 l~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~-f~~ivpiSA~  155 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLP-FKEIVPISAL  155 (298)
T ss_pred             hccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHHH--HHHHHHHHHhhCC-cceEEEeecc
Confidence            889999999999887543322  3466777763  7899999999998876442  2233344444443 3479999999


Q ss_pred             cCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKR  200 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~r  200 (670)
                      +|.|++.+.+.+... ++..++.|+.+.....+....+.+-
T Consensus       156 ~g~n~~~L~~~i~~~-Lpeg~~~yp~d~itD~~~rf~~aEi  195 (298)
T COG1159         156 KGDNVDTLLEIIKEY-LPEGPWYYPEDQITDRPERFLAAEI  195 (298)
T ss_pred             ccCCHHHHHHHHHHh-CCCCCCcCChhhccCChHHHHHHHH
Confidence            999999999877665 4455667777777766665544443

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.81  E-value=1.2e-19  Score=166.21  Aligned_cols=134  Identities=18%  Similarity=0.208  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh-----hhHhhhhchHhhccccc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKILSNKEALASCD  499 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----~~~~~~~~~~~~~~~ad  499 (670)
                      ||+++|++|||||||+|+|.+..+.  +.+|.+.++..            .+||++|.     ..+..+   ...++++|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~~------------~~iDt~G~~~~~~~~~~~~---~~~~~~ad   64 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYND------------GAIDTPGEYVENRRLYSAL---IVTAADAD   64 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEcC------------eeecCchhhhhhHHHHHHH---HHHhhcCC
Confidence            7999999999999999999988753  23444333322            34677765     223333   23589999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      ++++|||++++.++.. ..|...    .     ..|+++|+||+|+.+.....+..+++++..+..+++++||++| |++
T Consensus        65 ~vilv~d~~~~~s~~~-~~~~~~----~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  134 (142)
T TIGR02528        65 VIALVQSATDPESRFP-PGFASI----F-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLE  134 (142)
T ss_pred             EEEEEecCCCCCcCCC-hhHHHh----c-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence            9999999999988754 233322    1     3599999999999764444566777888877767999999999 999


Q ss_pred             HHHHHHH
Q 005908          579 NVFSRII  585 (670)
Q Consensus       579 ~l~~~l~  585 (670)
                      ++|+++.
T Consensus       135 ~l~~~l~  141 (142)
T TIGR02528       135 ALVDYLN  141 (142)
T ss_pred             HHHHHHh
Confidence            9999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.81  E-value=3.7e-19  Score=167.79  Aligned_cols=153  Identities=25%  Similarity=0.353  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC------CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFS------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~------~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      +|+++|++|||||||+++|.+....      ..+.+|.+..+  ..+..+  ...+.+||++|++.+..+  +..+++.+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~~   74 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSL--WDKYYAEC   74 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHH--HHHHhCCC
Confidence            5899999999999999999864322      12223444333  234443  467788999999888877  77889999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh----C--CCCcEEeec
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----G--IEPPIPVSM  572 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~--~~~~~~vSA  572 (670)
                      |++++|+|++++.++.....++..+.+.....  +.|+++|+||+|+... ....+..++.+..    +  ..+++++||
T Consensus        75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  151 (167)
T cd04160          75 HAIIYVIDSTDRERFEESKSALEKVLRNEALE--GVPLLILANKQDLPDA-LSVEEIKEVFQDKAEEIGRRDCLVLPVSA  151 (167)
T ss_pred             CEEEEEEECchHHHHHHHHHHHHHHHhChhhc--CCCEEEEEEccccccC-CCHHHHHHHhccccccccCCceEEEEeeC
Confidence            99999999999888888888888776543322  6999999999998763 2233333333321    1  125999999


Q ss_pred             ccC-ChHHHHHHHHH
Q 005908          573 KSK-DLNNVFSRIIW  586 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~  586 (670)
                      ++| |+++++++|.+
T Consensus       152 ~~g~gv~e~~~~l~~  166 (167)
T cd04160         152 LEGTGVREGIEWLVE  166 (167)
T ss_pred             CCCcCHHHHHHHHhc
Confidence            999 99999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01890 LepA LepA subfamily

Probab=99.81  E-value=6.6e-19  Score=168.16  Aligned_cols=155  Identities=15%  Similarity=0.215  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-------CCCCCCc------ccceEEEE--EEc---CCCceEEEEEecCChhhHh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFS-------ENYAPTT------GEQYAVNV--VDQ---PGGNKKTLILQEIPEEGVK  486 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~-------~~~~~t~------~~~~~~~~--vd~---~g~~~~~~i~d~~g~~~~~  486 (670)
                      +|+++|.+|||||||+++|++....       ..+.++.      +..+....  +.+   ++....+.+||++|++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            6899999999999999999974321       1111211      12222222  112   4456678899999999888


Q ss_pred             hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-
Q 005908          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-  565 (670)
Q Consensus       487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-  565 (670)
                      ..  +..+++.+|++|+|+|++++.+++....|.... ..      ++|+++|+||+|+.+.. .....+++++.+++. 
T Consensus        82 ~~--~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~------~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~  151 (179)
T cd01890          82 YE--VSRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN------NLEIIPVINKIDLPSAD-PERVKQQIEDVLGLDP  151 (179)
T ss_pred             HH--HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc------CCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCCc
Confidence            77  778899999999999999987776666654332 21      68999999999986522 233445677777764 


Q ss_pred             -CcEEeecccC-ChHHHHHHHHHHHh
Q 005908          566 -PPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       566 -~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                       +++++||++| |++++++++.+.+.
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence             4899999999 99999999988764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.81  E-value=1.1e-19  Score=172.24  Aligned_cols=160  Identities=16%  Similarity=0.256  Sum_probs=122.5

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+.+||+++|.+|+|||||++++..+.+....|+.. ...  ..+...++.+.+||.+|+..+...|+.+++++|++||
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g-~~~--~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG-FNI--EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS-EEE--EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccccCcccc-ccc--ceeeeCcEEEEEEeccccccccccceeeccccceeEE
Confidence            3788999999999999999999999876554344322 222  2344477899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH--HHhc--cCCeEEEeCcccCCC
Q 005908           89 TYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR--EIETCVECSATTMIQ  163 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~SA~~~~g  163 (670)
                      |+|.++.+.+.+..+.+...+.. ...++|+++++||+|+.+....    +.+....  ..+.  ....++.|||.+|+|
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~----~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE----EEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH----HHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh----hHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            99999999998888766666653 2247999999999998764322    1122111  1221  223689999999999


Q ss_pred             chHHHHHHHHHH
Q 005908          164 VPDVFYYAQKAV  175 (670)
Q Consensus       164 i~~l~~~i~~~~  175 (670)
                      +.+.++++.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01898 Obg Obg subfamily

Probab=99.81  E-value=6.2e-19  Score=166.76  Aligned_cols=161  Identities=18%  Similarity=0.123  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChh----hHhhh-hchHhhccccc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----GVKKI-LSNKEALASCD  499 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----~~~~~-~~~~~~~~~ad  499 (670)
                      +|+++|++|||||||+|+|.+........+.++....+..+..+ +...+.+||++|..    ..+.+ ......+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            58999999999999999999876532222222222222334444 33467889999952    11111 11233456799


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|+|++++ .+++.+..|.+.+...... ..++|+++|+||+|+.+.....+....+.......+++++||++| |+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE-LLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc-ccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 7899999998888765421 115899999999999775555555555655542345999999999 99


Q ss_pred             HHHHHHHHHH
Q 005908          578 NNVFSRIIWA  587 (670)
Q Consensus       578 ~~l~~~l~~~  587 (670)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01898 Obg Obg subfamily

Probab=99.81  E-value=4.4e-19  Score=167.79  Aligned_cols=155  Identities=17%  Similarity=0.166  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeEeCCcccCCc-eeEEEEeCCCCcc----chhhhHH---HhccCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLE----NKGKLNE---ELKRAD   84 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~---~~~~ad   84 (670)
                      .|+|+|++|||||||+|+|.+..... ..+++.... ....+...+ ..+.+|||||+.+    ...+...   .+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVP-NLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCC-cceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            58999999999999999999766421 122211111 111222333 4899999999742    1122333   345699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           85 AVVLTYACNQQ-STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        85 ~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      ++++|+|++++ ++++.+. .|.+.+....   .++|+++|+||+|+.+....   .+....+..... ..+++++||++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa~~  155 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKELW-GKPVFPISALT  155 (170)
T ss_pred             EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhCC-CCCEEEEecCC
Confidence            99999999999 7888876 4888887653   36899999999998765432   222333333321 13699999999


Q ss_pred             CCCchHHHHHHHHH
Q 005908          161 MIQVPDVFYYAQKA  174 (670)
Q Consensus       161 ~~gi~~l~~~i~~~  174 (670)
                      +.|++++|+++.+.
T Consensus       156 ~~gi~~l~~~i~~~  169 (170)
T cd01898         156 GEGLDELLRKLAEL  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999988764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.81  E-value=1.8e-19  Score=163.91  Aligned_cols=147  Identities=21%  Similarity=0.317  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh------hhHhhhhchHhhc--
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EGVKKILSNKEAL--  495 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~------~~~~~~~~~~~~~--  495 (670)
                      ++|+++|.||||||||+|+|+|.+......|.++.+.....+.+.+  ..+.++|++|.      ...+.+  +..++  
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~   76 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERV--ARDYLLS   76 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHH--HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHH--HHHHHhh
Confidence            5899999999999999999999986554445555455555555543  56667888873      122334  34444  


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      ...|+++.|+|+++.   +.......++.+.      ++|+++|+||+|+..++......+.+.+.++++ ++++||+++
T Consensus        77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~sa~~~  146 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL---ERNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVSARTG  146 (156)
T ss_dssp             TSSSEEEEEEEGGGH---HHHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTT
T ss_pred             cCCCEEEEECCCCCH---HHHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEEeCCC
Confidence            689999999999874   3344555666655      799999999999988776666788999999987 999999999


Q ss_pred             -ChHHHHHHH
Q 005908          576 -DLNNVFSRI  584 (670)
Q Consensus       576 -~v~~l~~~l  584 (670)
                       |+++++++|
T Consensus       147 ~g~~~L~~~I  156 (156)
T PF02421_consen  147 EGIDELKDAI  156 (156)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHhhC
Confidence             999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=7.7e-19  Score=181.48  Aligned_cols=189  Identities=19%  Similarity=0.178  Sum_probs=137.5

Q ss_pred             HhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChh----hHh--
Q 005908          415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEE----GVK--  486 (670)
Q Consensus       415 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----~~~--  486 (670)
                      ++++..+..+|++|+|+||||||||+|+|++.+..++++  +||++ +-...+++.|  ..+.++||+|-.    ..+  
T Consensus       209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-viee~i~i~G--~pv~l~DTAGiRet~d~VE~i  285 (454)
T COG0486         209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-VIEEDINLNG--IPVRLVDTAGIRETDDVVERI  285 (454)
T ss_pred             hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-eEEEEEEECC--EEEEEEecCCcccCccHHHHH
Confidence            455667889999999999999999999999999999988  46655 4445566764  556679999942    222  


Q ss_pred             hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCC
Q 005908          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEP  566 (670)
Q Consensus       487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  566 (670)
                      .+.++...+.+||.+++|+|++.+.+-.+ ...+..+    . .  ++|+++|.||+||..+....    .+ +..+-.+
T Consensus       286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d-~~~~~~~----~-~--~~~~i~v~NK~DL~~~~~~~----~~-~~~~~~~  352 (454)
T COG0486         286 GIERAKKAIEEADLVLFVLDASQPLDKED-LALIELL----P-K--KKPIIVVLNKADLVSKIELE----SE-KLANGDA  352 (454)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCchhh-HHHHHhc----c-c--CCCEEEEEechhcccccccc----hh-hccCCCc
Confidence            25668889999999999999998633222 2222211    1 1  69999999999999843321    11 1112225


Q ss_pred             cEEeecccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcch
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGV  621 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (670)
                      ++.+||++| |++.|.++|.+.+...  .........++.||.++++++..++..+
T Consensus       353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~--~~~~~~~~i~~~Rh~~~L~~a~~~l~~a  406 (454)
T COG0486         353 IISISAKTGEGLDALREAIKQLFGKG--LGNQEGLFLSNLRHIQLLEQAAEHLEDA  406 (454)
T ss_pred             eEEEEecCccCHHHHHHHHHHHHhhc--ccccccceeecHHHHHHHHHHHHHHHHH
Confidence            899999999 9999999999988764  2233344667789999999988887643

>cd04171 SelB SelB subfamily

Probab=99.81  E-value=3.2e-19  Score=167.52  Aligned_cols=154  Identities=19%  Similarity=0.113  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      +.|+++|++|||||||+++|++..   +... .+++. ........+. .+..+.+|||||++++......+++++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            468999999999999999999743   2222 11111 1111111111 2678999999999888777778889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcccCCC
Q 005908           88 LTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQ  163 (670)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~g  163 (670)
                      +|+|+++   .++.+.     +..++.. ..+|+++|+||+|+..........+.........+ ...+++++||++|.|
T Consensus        80 ~V~d~~~~~~~~~~~~-----~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREH-----LEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHH-----HHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   333332     2223333 13499999999999754211001122222222210 124799999999999


Q ss_pred             chHHHHHHHH
Q 005908          164 VPDVFYYAQK  173 (670)
Q Consensus       164 i~~l~~~i~~  173 (670)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PLN00023 GTP-binding protein; Provisional

Probab=99.81  E-value=4.6e-19  Score=178.28  Aligned_cols=142  Identities=25%  Similarity=0.289  Sum_probs=111.6

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc-------------CCceeEEEEeCCCCc
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-------------PDRVPVTIIDTSSSL   70 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~i~Dt~G~~   70 (670)
                      .......+||+|+|+.|||||||+++|+++.|.....++.+...  ..+.+.             ...+.+.||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            44566789999999999999999999999988776544443322  222222             235789999999999


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-------------CCCCEEEEEeCCCCCCCCC--cc-
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-------------IKVPIIVAGCKLDLRGDHN--AT-  134 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~pvilv~NK~Dl~~~~~--~~-  134 (670)
                      .+..++..+++++|++|+|||++++.+++++. .|++.+....             .++|++|||||+|+...+.  .. 
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s  173 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS  173 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence            99999999999999999999999999999998 5999997642             2589999999999976532  10 


Q ss_pred             -chhhhhhHHHHHhc
Q 005908          135 -SLEEVMGPIMQQFR  148 (670)
Q Consensus       135 -~~~~~~~~~~~~~~  148 (670)
                       ...+..+.++++.+
T Consensus       174 ~~~~e~a~~~A~~~g  188 (334)
T PLN00023        174 GNLVDAARQWVEKQG  188 (334)
T ss_pred             cccHHHHHHHHHHcC
Confidence             13456677887776

>cd01878 HflX HflX subfamily

Probab=99.80  E-value=1.5e-18  Score=169.46  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=111.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH------hhhhchHh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKE  493 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~------~~~~~~~~  493 (670)
                      .++.++|+|+|++|||||||+|++++..+.....+.++.......+.++ +...+.+||++|....      +.......
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLE  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence            4566899999999999999999999987543332222222333445555 3346788999996211      11111233


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                      .+..+|++++|+|++++.++.....|...+......   ++|+++|+||+|+.+.....    ......+ .+++++||+
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~---~~~viiV~NK~Dl~~~~~~~----~~~~~~~-~~~~~~Sa~  188 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE---DIPMILVLNKIDLLDDEELE----ERLEAGR-PDAVFISAK  188 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC---CCCEEEEEEccccCChHHHH----HHhhcCC-CceEEEEcC
Confidence            467899999999999998888777776666554322   58999999999997643211    2333333 359999999


Q ss_pred             cC-ChHHHHHHHHHH
Q 005908          574 SK-DLNNVFSRIIWA  587 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~  587 (670)
                      +| |+++++++|.+.
T Consensus       189 ~~~gi~~l~~~L~~~  203 (204)
T cd01878         189 TGEGLDELLEAIEEL  203 (204)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            99 999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.80  E-value=1e-18  Score=162.72  Aligned_cols=153  Identities=21%  Similarity=0.264  Sum_probs=116.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEE
Q 005908          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY  505 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~  505 (670)
                      |+++|++|||||||+|+|.+.++...+.+|++..+.  .++.+  ...+.+||++|+..+..+  +..+++.+|++++|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~--~~~~~~~~d~ii~v~   75 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSM--WERYCRGVNAIVYVV   75 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHH--HHHHHhcCCEEEEEE
Confidence            899999999999999999999988777777765543  23333  367889999999888877  778899999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH-Hh--CCCCcEEeecccC-ChHHHH
Q 005908          506 DSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-EL--GIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       506 D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~--~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |+++..++.....++..+.......  ++|+++|+||+|+.+.....+....+.. ..  ...+++++||++| |+++++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (159)
T cd04159          76 DAADRTALEAAKNELHDLLEKPSLE--GIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL  153 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence            9999888888877777765432222  6899999999998764322211111110 00  1125799999999 999999


Q ss_pred             HHHHH
Q 005908          582 SRIIW  586 (670)
Q Consensus       582 ~~l~~  586 (670)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04159         154 DWLIK  158 (159)
T ss_pred             HHHhh
Confidence            99875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.80  E-value=2e-18  Score=180.43  Aligned_cols=157  Identities=23%  Similarity=0.256  Sum_probs=112.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------HhhhhchHhh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEA  494 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~~~~~~~~~~  494 (670)
                      ...++|+++|.||||||||+|+|++........+.++.+.....+.++++ ..+.+|||+|..+      .+.+..+...
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle~  265 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLEE  265 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            45699999999999999999999998754333332333445566777633 4778899999611      1223334567


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      +.+||++++|+|++++.+++....|...+......   ++|+++|+||+|+.+..    ....+..  +..+++++||++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~---~~piIlV~NK~Dl~~~~----~v~~~~~--~~~~~i~iSAkt  336 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAE---DIPQLLVYNKIDLLDEP----RIERLEE--GYPEAVFVSAKT  336 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC---CCCEEEEEEeecCCChH----hHHHHHh--CCCCEEEEEccC
Confidence            88999999999999998877776665555544321   58999999999997532    1222211  223589999999


Q ss_pred             C-ChHHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIWA  587 (670)
Q Consensus       575 g-~v~~l~~~l~~~  587 (670)
                      | |++++++.|.+.
T Consensus       337 g~GI~eL~~~I~~~  350 (351)
T TIGR03156       337 GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCHHHHHHHHHhh
Confidence            9 999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.80  E-value=2e-18  Score=185.54  Aligned_cols=186  Identities=16%  Similarity=0.149  Sum_probs=132.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK  492 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~  492 (670)
                      .+..++|+++|+||||||||+|+|++..+..++. ++++.+.....+.++|  ..+.+|||+|......      +.+..
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            3566899999999999999999999987654433 3333445455566664  4467899999743322      22346


Q ss_pred             hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      .+++.+|++++|+|++++.+++..  |+..+...      ++|+++|+||+|+...     ....+++.++.+ ++++||
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~-~~~vSa  343 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFILVLNKIDLKIN-----SLEFFVSSKVLN-SSNLSA  343 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEEEEEECccCCCc-----chhhhhhhcCCc-eEEEEE
Confidence            788999999999999998887654  66555432      6899999999999753     224455666655 899999


Q ss_pred             ccCChHHHHHHHHHHHhCCCCC-CC-CCcccccHHHHHHHhhhhhhhhcch
Q 005908          573 KSKDLNNVFSRIIWAAEHPHLN-IP-ETETGRNRKRYRHLVNSSLVFVSGV  621 (670)
Q Consensus       573 ~~g~v~~l~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~  621 (670)
                      +++|++++|+.+.+.+...-.. .. .........||.++++++..++...
T Consensus       344 k~~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~  394 (442)
T TIGR00450       344 KQLKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQF  394 (442)
T ss_pred             ecCCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHH
Confidence            9889999999998877543211 11 1223445678889999888887643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.80  E-value=6.8e-19  Score=166.08  Aligned_cols=157  Identities=17%  Similarity=0.108  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccC---CceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP---DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      .|+|+|++|||||||+++|.+.++.....+..........+..   .+..+.+|||||+..+...+..+++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            5999999999999999999988866542211111111111222   4678999999999888888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH----HhccCCeEEEeCcccCCCchH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ----QFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |+++....+...  .+..++..  ++|+++|+||+|+...... ........+..    ..+...+++++||++|.|+++
T Consensus        82 d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T cd01887          82 AADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD  156 (168)
T ss_pred             ECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence            998754322221  33344444  7899999999998753211 11122222211    122224799999999999999


Q ss_pred             HHHHHHHHH
Q 005908          167 VFYYAQKAV  175 (670)
Q Consensus       167 l~~~i~~~~  175 (670)
                      +++++.+..
T Consensus       157 l~~~l~~~~  165 (168)
T cd01887         157 LLEAILLLA  165 (168)
T ss_pred             HHHHHHHhh
Confidence            999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.79  E-value=1.3e-18  Score=179.70  Aligned_cols=204  Identities=21%  Similarity=0.233  Sum_probs=147.0

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH------
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN------   77 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------   77 (670)
                      ....+..+||+|+|+||||||||+|.|++..  ++.+.|+++.. .+...+..+++.+.++||+|..+.....+      
T Consensus       211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-viee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeR  289 (454)
T COG0486         211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-VIEEDINLNGIPVRLVDTAGIRETDDVVERIGIER  289 (454)
T ss_pred             hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-eEEEEEEECCEEEEEEecCCcccCccHHHHHHHHH
Confidence            4456788999999999999999999999988  66667774332 26777888999999999999986655444      


Q ss_pred             --HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEE
Q 005908           78 --EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        78 --~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                        ..+++||.+++|+|.+.+.+-.+..  .+.   ....++|+++|.||+|+......    .   ..  +...-.+++.
T Consensus       290 s~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~----~---~~--~~~~~~~~i~  355 (454)
T COG0486         290 AKKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL----E---SE--KLANGDAIIS  355 (454)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc----c---hh--hccCCCceEE
Confidence              6789999999999998863333322  222   23347999999999999875332    1   11  1111125899


Q ss_pred             eCcccCCCchHHHHHHHHHHcCC-CC--CCC--ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhh
Q 005908          156 CSATTMIQVPDVFYYAQKAVLHP-TA--PLF--DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK  224 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~~-~~--~~~--~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~  224 (670)
                      +||++|+|++.+.+.+.+.+... ..  ..+  ..+.......+..++++.....+......+..++++..+..
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~  429 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEA  429 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHH
Confidence            99999999999999999887655 11  112  23333466777788877777666544667777777766554

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.79  E-value=5.3e-19  Score=161.97  Aligned_cols=135  Identities=18%  Similarity=0.193  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc-----cchhhhHHHhccCCEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----ENKGKLNEELKRADAVVL   88 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~ii~   88 (670)
                      ||+++|++|||||||+|+|++..+..  .++     ....+.     -.+|||||+.     .+.... ..++++|++++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~t-----~~~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil   68 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEILY--KKT-----QAVEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIAL   68 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcccc--ccc-----eeEEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence            89999999999999999999887532  211     111121     1689999973     222222 35889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |||++++.++...  .|...+     ..|+++|+||+|+.+. ..  ..+....+.+..+. .+++++||++|.|++++|
T Consensus        69 v~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        69 VQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-DV--DIERAKELLETAGA-EPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-cc--CHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHH
Confidence            9999999987652  254432     3499999999998652 22  22334555555542 369999999999999999


Q ss_pred             HHHH
Q 005908          169 YYAQ  172 (670)
Q Consensus       169 ~~i~  172 (670)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            8764

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04155 Arl3 Arl3 subfamily

Probab=99.79  E-value=3.1e-18  Score=162.48  Aligned_cols=153  Identities=24%  Similarity=0.352  Sum_probs=116.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...++|+|+|++|||||||++++.+..+.. ..+|.+  +....++..|  ..+.+||++|+..+...  +..+++.+|+
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~--~~~~~~~~~~   84 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPY--WRNYFENTDC   84 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHH--HHHHhcCCCE
Confidence            346999999999999999999999986643 234544  3334455553  56778999999877766  6778899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~  573 (670)
                      +++|+|+++..++.....++..+.......  ++|+++++||+|+....    ..+++.+.+++.       +++++||+
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAK  158 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECC
Confidence            999999999888888777777665543322  69999999999987632    233444444442       36899999


Q ss_pred             cC-ChHHHHHHHHH
Q 005908          574 SK-DLNNVFSRIIW  586 (670)
Q Consensus       574 ~g-~v~~l~~~l~~  586 (670)
                      +| |++++|++|.+
T Consensus       159 ~~~gi~~~~~~l~~  172 (173)
T cd04155         159 TGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99 99999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=1.9e-18  Score=178.94  Aligned_cols=159  Identities=18%  Similarity=0.163  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCccc-CCceeEEEEeCCCCccch----h---hhHHHhccC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----G---KLNEELKRA   83 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~a   83 (670)
                      ..|+|||.||||||||+|+|++.+.. .++|.++..... ..+. .+..++.+|||||+.+..    .   .+-.+++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~-G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL-GVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE-EEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            46999999999999999999986532 223332111111 1222 245679999999975321    1   223456789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcCC---CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      +++|+|+|+++.++++++. .|..++..+.+   ++|+++|+||+|+.+....  ..+....+....+  .++++|||++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~--~~i~~iSAkt  312 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG--GPVFLISAVT  312 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC--CCEEEEEcCC
Confidence            9999999999888888887 48888877643   7899999999999764432  2222333333333  3699999999


Q ss_pred             CCCchHHHHHHHHHHcC
Q 005908          161 MIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~  177 (670)
                      +.||+++++.+.+.+..
T Consensus       313 g~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        313 GEGLDELLRALWELLEE  329 (335)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999887643

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.79  E-value=1.9e-18  Score=170.74  Aligned_cols=166  Identities=25%  Similarity=0.393  Sum_probs=128.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCccc--CCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+++|++|||||||+++|.++.+...++++...........  ...+++.+|||+|++++...+..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            349999999999999999999999999887655433333222222  227889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCc-----------cchhhhhhHHHHHh--ccCCeEE
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNA-----------TSLEEVMGPIMQQF--REIETCV  154 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~--~~~~~~~  154 (670)
                      |+|.++..++.++...|...++...+ +.|+++|+||+|+......           ..... ........  ... .++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~  161 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLV-LAPKAVLPEVANP-ALL  161 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhh-hHhHHhhhhhccc-cee
Confidence            99999988888887789999988763 7999999999999886421           01111 11111111  122 389


Q ss_pred             EeCcc--cCCCchHHHHHHHHHHcCC
Q 005908          155 ECSAT--TMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       155 ~~SA~--~~~gi~~l~~~i~~~~~~~  178 (670)
                      ++||+  .+.+|.++|..+.+.+...
T Consensus       162 ~~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         162 ETSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             EeecccCCCcCHHHHHHHHHHHHHHh
Confidence            99999  9999999999999887644

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.79  E-value=1.5e-18  Score=187.70  Aligned_cols=196  Identities=20%  Similarity=0.217  Sum_probs=132.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHH
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNE   78 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~   78 (670)
                      .+..++|+++|.+|||||||+|+|++...  +.+.+++.... ....+..++..+.+|||||+.++...        ...
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~  290 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDV-IEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE  290 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccccc-EEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence            34568999999999999999999998763  44455433222 22334446788999999998765432        224


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +++.+|++++|+|++++.++++.. .|..     ..++|+++|+||+|+...... .         ...+  .+++++||
T Consensus       291 ~~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~~~-~---------~~~~--~~~i~iSA  352 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEIDL-E---------EENG--KPVIRISA  352 (449)
T ss_pred             HHHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccchh-h---------hccC--CceEEEEe
Confidence            688999999999999988877543 2332     347899999999999754322 1         1111  36899999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC-----CCCC-ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhh
Q 005908          159 TTMIQVPDVFYYAQKAVLHPT-----APLF-DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV  223 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~  223 (670)
                      ++|.|++++++.+.+.+....     .... ..+......++.++|.+..........-.+..++++....
T Consensus       353 ktg~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~  423 (449)
T PRK05291        353 KTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALE  423 (449)
T ss_pred             eCCCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            999999999999998875311     1111 1222335556666676655554433444555666655544

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.79  E-value=4.3e-18  Score=160.71  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----h-hchHhh-cc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEA-LA  496 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~-~~  496 (670)
                      .+|+++|.+|||||||+|+|.+..+.....+.++.......+...  ...+.+||++|......     + ...... ..
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999987653322222222333334332  35788899999732100     0 001111 12


Q ss_pred             cccEEEEEEECCCcccH--HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          497 SCDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      .+|++++|+|+++..++  +....|+..+.....    +.|+++|+||+|+.......+ .+++.+..+. +++++||++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~----~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~-~~~~~Sa~~  152 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK----NKPVIVVLNKIDLLTFEDLSE-IEEEEELEGE-EVLKISTLT  152 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC----cCCeEEEEEccccCchhhHHH-HHHhhhhccC-ceEEEEecc
Confidence            36899999999987653  556677777765432    589999999999976433222 4444444333 599999999


Q ss_pred             C-ChHHHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIWAA  588 (670)
Q Consensus       575 g-~v~~l~~~l~~~~  588 (670)
                      | |++++++++.+.+
T Consensus       153 ~~gi~~l~~~l~~~~  167 (168)
T cd01897         153 EEGVDEVKNKACELL  167 (168)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            9 9999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04171 SelB SelB subfamily

Probab=99.78  E-value=4.6e-18  Score=159.63  Aligned_cols=154  Identities=15%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~---~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +.|+++|++|||||||+|+|.+.....   ...++++.......+..++ ...+.+||++|++.+...  ...++..+|+
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~--~~~~~~~ad~   77 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKN--MLAGAGGIDL   77 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHH--HHhhhhcCCE
Confidence            368999999999999999999753222   2223333333334455542 457888999999887654  5677889999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHh--CCCCcEEeecccC
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL--GIEPPIPVSMKSK  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~--~~~~~~~vSA~~g  575 (670)
                      +++|+|++++.. ......+..+... .    ..|+++|+||+|+.+....   ..+..+..+..  ...+++++||++|
T Consensus        78 ii~V~d~~~~~~-~~~~~~~~~~~~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (164)
T cd04171          78 VLLVVAADEGIM-PQTREHLEILELL-G----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG  151 (164)
T ss_pred             EEEEEECCCCcc-HhHHHHHHHHHHh-C----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence            999999987422 1122222222222 1    2499999999999764211   23333333332  2236999999999


Q ss_pred             -ChHHHHHHHHH
Q 005908          576 -DLNNVFSRIIW  586 (670)
Q Consensus       576 -~v~~l~~~l~~  586 (670)
                       |++++++.+.+
T Consensus       152 ~~v~~l~~~l~~  163 (164)
T cd04171         152 EGIEELKEYLDE  163 (164)
T ss_pred             cCHHHHHHHHhh
Confidence             99999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.78  E-value=5e-19  Score=161.02  Aligned_cols=147  Identities=16%  Similarity=0.216  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh------hhHHHh--ccC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--KRA   83 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~a   83 (670)
                      ++|+++|.||||||||+|+|++.+. ..++|+++.. .....+...+..+.++|+||......      ....++  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~-~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVE-KKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSE-EEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCee-eeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            5899999999999999999999983 3447775433 34445565678999999999654322      222333  689


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      |+++.|+|+++.+.  + . ++..++.+.  ++|+++|.||+|+...... ..  ..+.+.+.++  .+++++||+++.|
T Consensus        80 D~ii~VvDa~~l~r--~-l-~l~~ql~e~--g~P~vvvlN~~D~a~~~g~-~i--d~~~Ls~~Lg--~pvi~~sa~~~~g  148 (156)
T PF02421_consen   80 DLIIVVVDATNLER--N-L-YLTLQLLEL--GIPVVVVLNKMDEAERKGI-EI--DAEKLSERLG--VPVIPVSARTGEG  148 (156)
T ss_dssp             SEEEEEEEGGGHHH--H-H-HHHHHHHHT--TSSEEEEEETHHHHHHTTE-EE---HHHHHHHHT--S-EEEEBTTTTBT
T ss_pred             CEEEEECCCCCHHH--H-H-HHHHHHHHc--CCCEEEEEeCHHHHHHcCC-EE--CHHHHHHHhC--CCEEEEEeCCCcC
Confidence            99999999887432  2 2 366666666  8999999999998776554 22  2466777777  3899999999999


Q ss_pred             chHHHHHH
Q 005908          164 VPDVFYYA  171 (670)
Q Consensus       164 i~~l~~~i  171 (670)
                      ++++++.|
T Consensus       149 ~~~L~~~I  156 (156)
T PF02421_consen  149 IDELKDAI  156 (156)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhC
Confidence            99999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK15494 era GTPase Era; Provisional

Probab=99.78  E-value=9.5e-18  Score=175.19  Aligned_cols=181  Identities=17%  Similarity=0.213  Sum_probs=121.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhh-Hhhh-----hchH
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKI-----LSNK  492 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-~~~~-----~~~~  492 (670)
                      .+.++|+++|++|||||||+|+|+++.+..+++  .||. ......+..++  ..+.+|||+|... +..+     ....
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr-~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR-SIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc-CcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            455899999999999999999999998876544  2333 33334455553  4578899999732 2221     1123


Q ss_pred             hhcccccEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC-CCCcEEe
Q 005908          493 EALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIPV  570 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v  570 (670)
                      .++..+|++++|+|+++.  +.... .|+..+...      +.|.++|+||+|+.+.  ......+++.... ..+++++
T Consensus       127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~i  196 (339)
T PRK15494        127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPI  196 (339)
T ss_pred             HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEE
Confidence            457899999999998764  44443 444555433      4678899999999753  2334444544443 3468999


Q ss_pred             ecccC-ChHHHHHHHHHHHh-CCCCCCCCCcccccHH-HHHHHhhhh
Q 005908          571 SMKSK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSS  614 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~  614 (670)
                      ||++| |++++++++.+.+. .+...+++..+..+.+ ...+++++.
T Consensus       197 SAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~  243 (339)
T PRK15494        197 SALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQ  243 (339)
T ss_pred             eccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            99999 99999999999774 4444445555554444 345555543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.78  E-value=4.3e-18  Score=158.25  Aligned_cols=155  Identities=18%  Similarity=0.252  Sum_probs=115.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCc--eeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR--VPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+++|.+|+|||||++++.+..+.....++.+.......+..++  +.+.+|||||+.++...+....+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999885544332222222222222333  8899999999999888888899999999999


Q ss_pred             EECCCh-hhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQ-STLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|+... .++......|...+..... +.|+++|+||+|+....    ............+. .+++++||++|.|+.++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~-~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNG-EPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccC-CceEEeecCCCCCHHHH
Confidence            999887 7776665456666665444 88999999999997643    12333344444443 36999999999999999


Q ss_pred             HHHH
Q 005908          168 FYYA  171 (670)
Q Consensus       168 ~~~i  171 (670)
                      ++.+
T Consensus       156 ~~~l  159 (161)
T TIGR00231       156 FKIV  159 (161)
T ss_pred             HHHh
Confidence            9875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.78  E-value=4.2e-18  Score=183.06  Aligned_cols=199  Identities=18%  Similarity=0.213  Sum_probs=132.4

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hH
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LN   77 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~   77 (670)
                      ..++.+||+++|+||||||||+|+|++..  ++...|++... .....+..++..+.+|||||+.++...        ..
T Consensus       199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd-~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRD-VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEE-EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            34567999999999999999999999875  44555554322 233344556788999999998655432        23


Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      .+++.+|++++|||++++.+++..   |+..+...  ++|+++|+||+|+... .       ...+.+.++  .+++++|
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~-~-------~~~~~~~~~--~~~~~vS  342 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN-S-------LEFFVSSKV--LNSSNLS  342 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc-c-------hhhhhhhcC--CceEEEE
Confidence            678999999999999998887753   66655543  7899999999998643 1       123334443  2589999


Q ss_pred             cccCCCchHHHHHHHHHHcCCCC--------CCCc-cccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhh
Q 005908          158 ATTMIQVPDVFYYAQKAVLHPTA--------PLFD-HDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV  223 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~~~~--------~~~~-~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~  223 (670)
                      |++ .||+++|+.+.+.+.....        .... .+......++..+|.+............+..++++....
T Consensus       343 ak~-~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~  416 (442)
T TIGR00450       343 AKQ-LKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAIN  416 (442)
T ss_pred             Eec-CCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            998 6999999888887643211        1111 112234455666666555544433344555566655544

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=8.3e-18  Score=174.19  Aligned_cols=165  Identities=18%  Similarity=0.097  Sum_probs=118.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh----Hhhh-hchHhhccc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALAS  497 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~  497 (670)
                      ...|+|||.||||||||+|+|.+........+.++.....-.+..+ ....+.+||++|..+    ...+ .+....+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            3579999999999999999999876443333433333444455554 345678899998521    1111 114556788


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      ++++++|+|+++.++++....|..++..+... ..++|+++|+||+|+.+.... ....+.+.+..+. +++++||+++ 
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~-L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i~~iSAktg~  314 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE-LADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PVFLISAVTGE  314 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh-cccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CEEEEEcCCCC
Confidence            99999999999888899999999999876432 115899999999999764432 2334444455554 4999999999 


Q ss_pred             ChHHHHHHHHHHHhC
Q 005908          576 DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~  590 (670)
                      |+++++++|.+.+..
T Consensus       315 GI~eL~~~L~~~l~~  329 (335)
T PRK12299        315 GLDELLRALWELLEE  329 (335)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.78  E-value=7.7e-18  Score=182.26  Aligned_cols=181  Identities=18%  Similarity=0.169  Sum_probs=127.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK  492 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~  492 (670)
                      .+..++|+++|.+|||||||+|+|++.++..+++ +.++.++....+.++|  ..+.+|||+|...+..      +.++.
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~  289 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSR  289 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence            3456899999999999999999999987654433 3333334445556653  4577899999743322      22345


Q ss_pred             hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      .+++.+|++++|+|++++.+++....|..     .  .  +.|+++|+||+|+.+.....        .....+++++||
T Consensus       290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~--~--~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSA  352 (449)
T PRK05291        290 EAIEEADLVLLVLDASEPLTEEDDEILEE-----L--K--DKPVIVVLNKADLTGEIDLE--------EENGKPVIRISA  352 (449)
T ss_pred             HHHHhCCEEEEEecCCCCCChhHHHHHHh-----c--C--CCCcEEEEEhhhccccchhh--------hccCCceEEEEe
Confidence            67899999999999999988765444332     1  1  68999999999997632211        222235899999


Q ss_pred             ccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcc
Q 005908          573 KSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSG  620 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (670)
                      ++| |++++++++.+.+...... ..........||.++++++..++..
T Consensus       353 ktg~GI~~L~~~L~~~l~~~~~~-~~~~~~~~~~R~~~~l~~a~~~l~~  400 (449)
T PRK05291        353 KTGEGIDELREAIKELAFGGFGG-NQEGVFLTNARHLEALERALEHLER  400 (449)
T ss_pred             eCCCCHHHHHHHHHHHHhhcccc-ccccceehHHHHHHHHHHHHHHHHH
Confidence            999 9999999999988642111 1222344567888888888877753

>PRK04213 GTP-binding protein; Provisional

Probab=99.77  E-value=1.6e-18  Score=168.86  Aligned_cols=157  Identities=21%  Similarity=0.216  Sum_probs=102.8

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCC-----------ccchhh
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSS-----------LENKGK   75 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~   75 (670)
                      ...+.++|+++|++|||||||+|+|++..+... .++   .+.....+...  .+.+|||||.           +.+...
T Consensus         5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~---~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG---VTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc---eeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHH
Confidence            345678999999999999999999998876543 333   22212222222  5899999994           344444


Q ss_pred             hHHHhc----cCCEEEEEEECCChhhHHH---------HHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhH
Q 005908           76 LNEELK----RADAVVLTYACNQQSTLSR---------LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP  142 (670)
Q Consensus        76 ~~~~~~----~ad~ii~v~d~~~~~s~~~---------~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~  142 (670)
                      +..+++    .++++++|+|.++...+..         ....+...+...  ++|+++|+||+|+.+..     .+....
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-----~~~~~~  152 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-----DEVLDE  152 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-----HHHHHH
Confidence            444443    4578888888765322200         111234444443  79999999999986532     223445


Q ss_pred             HHHHhccC-------CeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          143 IMQQFREI-------ETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       143 ~~~~~~~~-------~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      +.+.++..       .+++++||++| ||+++++++.+.+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            55555421       14899999999 999999999987643

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.77  E-value=8.2e-18  Score=147.54  Aligned_cols=163  Identities=13%  Similarity=0.168  Sum_probs=123.4

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..++++|.|+|..|+||||++++|.+.......|+ .+....  ....+++++++||.+|+......|..|+..+|++|+
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt-~gf~Ik--tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPT-LGFQIK--TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCCccccCCc-cceeeE--EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            34589999999999999999999988773332333 222111  344678999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccch--hhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           89 TYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|.+++..+++....+...+.. .-.+.|+++++||.|+...-.....  .-.++.+++...  .+.+.|||.+|+++.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~--~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH--WRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC--ceEEEEeccccccHH
Confidence            99999999888887766666643 2247999999999999854222111  122344443332  379999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      +-++++...+.
T Consensus       168 ~gidWL~~~l~  178 (185)
T KOG0073|consen  168 EGIDWLCDDLM  178 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>cd01878 HflX HflX subfamily

Probab=99.77  E-value=3.3e-18  Score=166.94  Aligned_cols=154  Identities=21%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCC-CCCCCeEeCCcccCCceeEEEEeCCCCccch--hh------hHHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GK------LNEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~   79 (670)
                      .+.++|+|+|++|||||||+|++++..+.. +.+ ++.........+ .+...+.+|||||+....  ..      ....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL-PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe-cCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987432 222 111112112222 223489999999973211  11      1123


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +..+|++++|+|++++.++.... .|.+.++... .++|+++|+||+|+......    .   ......  ..+++++||
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~----~---~~~~~~--~~~~~~~Sa  187 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEEL----E---ERLEAG--RPDAVFISA  187 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHHH----H---HHhhcC--CCceEEEEc
Confidence            67899999999999998887765 3777776643 36899999999999754322    1   222222  237999999


Q ss_pred             ccCCCchHHHHHHHHH
Q 005908          159 TTMIQVPDVFYYAQKA  174 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~  174 (670)
                      ++|.|++++++++.+.
T Consensus       188 ~~~~gi~~l~~~L~~~  203 (204)
T cd01878         188 KTGEGLDELLEAIEEL  203 (204)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999988764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.77  E-value=6.2e-19  Score=151.12  Aligned_cols=162  Identities=20%  Similarity=0.257  Sum_probs=127.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      +.++.+.++|-.++|||||+|.+..+.+.++ .|++....+   .+..+.+.+.+||.||+..|..+|+.|+++++++++
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            4578899999999999999999999888777 666554444   566788999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |+|+.+++..+...+++...+.+. -.++|+++.|||.|+...-....+.+.+.-..-.-.+ ..+|.+||++..||+.+
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE-vcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE-VCCFSISCKEKVNIDIT  173 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce-EEEEEEEEcCCccHHHH
Confidence            999999999888888888888653 3589999999999998753220111111100011112 25899999999999999


Q ss_pred             HHHHHHHH
Q 005908          168 FYYAQKAV  175 (670)
Q Consensus       168 ~~~i~~~~  175 (670)
                      .+++++..
T Consensus       174 ~~Wli~hs  181 (186)
T KOG0075|consen  174 LDWLIEHS  181 (186)
T ss_pred             HHHHHHHh
Confidence            99998764

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.77  E-value=5e-18  Score=163.38  Aligned_cols=159  Identities=19%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC--------------CeE--eCCcccCCceeEEEEeCCCCccchhhhH
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--------------PTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN   77 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (670)
                      +|+|+|.+|+|||||+|+|++............              .+.  ....+...+..+.+|||||+.++...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999998876544322110              000  1112234467899999999988888888


Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc---------
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------  148 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------  148 (670)
                      .+++.+|++++|+|+++..+....  .++..+...  ++|+++|+||+|+..........+.+....+..+         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            999999999999999877655433  255555553  8999999999999863222012222333333322         


Q ss_pred             ---cCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          149 ---EIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       149 ---~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                         ...+++++||++|.|++++++.+.+.+.
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence               2357999999999999999999988764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.77  E-value=3.6e-18  Score=178.48  Aligned_cols=152  Identities=20%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCC-CCCCCeEeCCcccCCceeEEEEeCCCCcc--chhh------hHHHh
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE--NKGK------LNEEL   80 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~------~~~~~   80 (670)
                      ..++|+++|.+|||||||+|+|++..+ ..+.+ ++.+.......+ .++..+.+|||+|+.+  ....      ....+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~-~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL-PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe-CCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence            348999999999999999999999874 23333 223333322233 2456899999999732  1111      12357


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      .+||++|+|+|++++.+.+.... |...++... .++|+++|+||+|+......       ......   ..+++++||+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-------~~~~~~---~~~~i~iSAk  335 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRI-------ERLEEG---YPEAVFVSAK  335 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhH-------HHHHhC---CCCEEEEEcc
Confidence            89999999999999988877653 666666543 37899999999998643211       111111   1258999999


Q ss_pred             cCCCchHHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQKA  174 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~  174 (670)
                      +|.|++++++.+.+.
T Consensus       336 tg~GI~eL~~~I~~~  350 (351)
T TIGR03156       336 TGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999988654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.77  E-value=7.5e-18  Score=173.77  Aligned_cols=152  Identities=18%  Similarity=0.260  Sum_probs=112.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChh-----hHhh--hhchHhh
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKK--ILSNKEA  494 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-----~~~~--~~~~~~~  494 (670)
                      +.|+|+|+||||||||+|||++...+.+++  ++|+++.+ ....+.|  ..+.++||.|-+     .+..  ..++..+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y-~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIY-GDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcc-ceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            579999999999999999999999988877  46665544 3333432  236667777733     2222  2236778


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      +..||++|||+|+..+.+ .......+.+...      ++|+++|+||+|-.+    .+....-...+|+..++.+||.+
T Consensus        81 i~eADvilfvVD~~~Git-~~D~~ia~~Lr~~------~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~H  149 (444)
T COG1160          81 IEEADVILFVVDGREGIT-PADEEIAKILRRS------KKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEH  149 (444)
T ss_pred             HHhCCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhh
Confidence            899999999999998766 3344444444432      699999999999764    22222334567888899999999


Q ss_pred             C-ChHHHHHHHHHHHh
Q 005908          575 K-DLNNVFSRIIWAAE  589 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~  589 (670)
                      | |+.+|++++.+.+.
T Consensus       150 g~Gi~dLld~v~~~l~  165 (444)
T COG1160         150 GRGIGDLLDAVLELLP  165 (444)
T ss_pred             ccCHHHHHHHHHhhcC
Confidence            9 99999999999984

>PRK11058 GTPase HflX; Provisional

Probab=99.77  E-value=1.8e-17  Score=177.13  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=112.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------HhhhhchHhhc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEAL  495 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~~~~~~~~~~~  495 (670)
                      ..++|+|+|.||||||||+|+|++.++.....+.++.+.....+.+++ ...+.+|||+|..+      .+.+.++...+
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~  274 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQET  274 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999876643333333334445566663 33567899999622      12233356678


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      +.||++|+|+|++++.++..+..|...+......   ++|+++|+||+|+.+....  ...  ....+.+.++++||++|
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~---~~pvIiV~NKiDL~~~~~~--~~~--~~~~~~~~~v~ISAktG  347 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH---EIPTLLVMNKIDMLDDFEP--RID--RDEENKPIRVWLSAQTG  347 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC---CCCEEEEEEcccCCCchhH--HHH--HHhcCCCceEEEeCCCC
Confidence            9999999999999998777765544444433221   5899999999999753211  111  11234443589999999


Q ss_pred             -ChHHHHHHHHHHHhC
Q 005908          576 -DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~  590 (670)
                       |++++++.|.+.+..
T Consensus       348 ~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        348 AGIPLLFQALTERLSG  363 (426)
T ss_pred             CCHHHHHHHHHHHhhh
Confidence             999999999998743

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.76  E-value=9e-18  Score=156.65  Aligned_cols=146  Identities=16%  Similarity=0.150  Sum_probs=103.3

Q ss_pred             EEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh------hhHHHhc--cCCEEE
Q 005908           17 VVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEELK--RADAVV   87 (670)
Q Consensus        17 ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~ad~ii   87 (670)
                      |+|++|||||||+|++++..+... .+++.... ....+...+..+.+|||||+..+..      +...++.  .+|+++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEK-KEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV   79 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCccccc-ceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence            589999999999999998863332 33322211 1122333457899999999876553      2455564  999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|+|+++.....    .|...+...  ++|+++|+||+|+.+....   ......+...++  .+++++||++|.|++++
T Consensus        80 ~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~iSa~~~~~~~~l  148 (158)
T cd01879          80 NVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRGI---KIDLDKLSELLG--VPVVPTSARKGEGIDEL  148 (158)
T ss_pred             EEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccccc---hhhHHHHHHhhC--CCeEEEEccCCCCHHHH
Confidence            999998765432    255555554  7999999999999765433   122345555555  37999999999999999


Q ss_pred             HHHHHHH
Q 005908          168 FYYAQKA  174 (670)
Q Consensus       168 ~~~i~~~  174 (670)
                      ++.+.+.
T Consensus       149 ~~~l~~~  155 (158)
T cd01879         149 KDAIAEL  155 (158)
T ss_pred             HHHHHHH
Confidence            9988775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.76  E-value=1.1e-17  Score=161.77  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc--CCCCCCCC---C---------CCCCeE--eCCcccCCceeEEEEeCCCCccchhhh
Q 005908           13 VRVVVVGDRGTGKSSLIAAAAT--ESVPEKVP---P---------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKL   76 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~--~~~~~~~~---~---------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~   76 (670)
                      -+|+++|++|||||||+++|++  +.|.....   .         ..+.+.  ....+..+++.+.+|||||++++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  44543321   0         011111  222344567899999999999999999


Q ss_pred             HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-----CC
Q 005908           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IE  151 (670)
Q Consensus        77 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~  151 (670)
                      ..+++.+|++++|||+++.. +.... .++..+...  ++|+++|+||+|+...+.. ...+.+..+...++.     -.
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  157 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTR-FVLKKALEL--GLKPIVVINKIDRPDARPE-EVVDEVFDLFIELGATEEQLDF  157 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHhCCccccCcc
Confidence            99999999999999998743 22222 244444444  7899999999999754322 122233333322210     13


Q ss_pred             eEEEeCcccCCCchHH
Q 005908          152 TCVECSATTMIQVPDV  167 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l  167 (670)
                      +++++||++|.|+.++
T Consensus       158 ~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         158 PVLYASAKNGWASLNL  173 (194)
T ss_pred             CEEEeehhcccccccc
Confidence            7999999999888543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PTZ00099 rab6; Provisional

Probab=99.76  E-value=2.3e-17  Score=156.09  Aligned_cols=141  Identities=17%  Similarity=0.259  Sum_probs=119.6

Q ss_pred             CCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHH
Q 005908          446 RPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR  525 (670)
Q Consensus       446 ~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~  525 (670)
                      +.|...+.+|++.++..+.+.++|+...+.+||++|++.+..+  +..++++||++|+|||++++.||+.+..|+..+..
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~--~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~   80 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL--IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN   80 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhc--cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3566677789988888788888877888999999999999988  78899999999999999999999999999998876


Q ss_pred             hcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          526 LGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       526 ~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      ....   +.|+++|+||+|+... ....+++..+++.++.. ++++||++| ||+++|++|++.+....
T Consensus        81 ~~~~---~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         81 ERGK---DVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             hcCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            5432   6899999999999753 33466777888888775 899999999 99999999999886543

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.76  E-value=1.9e-17  Score=171.52  Aligned_cols=163  Identities=16%  Similarity=0.086  Sum_probs=118.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh----hh-hchHhhccc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALAS  497 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~~  497 (670)
                      ...|+|||.||||||||+|+|.+........+.++.......+.++ ....+.+||++|..+..    .+ ....+.+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            4689999999999999999999876443333333333444455555 44677889999863211    11 113455678


Q ss_pred             ccEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       498 ad~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      +|++++|+|+++.   .+++.+..|..++..+... ..++|+++|+||+|+.......+..+++++.++.. ++++||++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~-l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iSAkt  313 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE-LAEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPISALT  313 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh-hccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEEccC
Confidence            9999999999976   6778888888888766421 11689999999999987544445556666666654 99999999


Q ss_pred             C-ChHHHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIWAA  588 (670)
Q Consensus       575 g-~v~~l~~~l~~~~  588 (670)
                      + |++++++.|.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            9 9999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1.5e-17  Score=159.75  Aligned_cols=224  Identities=14%  Similarity=0.197  Sum_probs=155.8

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh-------Hhhhhch
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILSN  491 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~~  491 (670)
                      ....+++|.++|.+|+|||||||+|++++...+..-..+.+........- ....+.+||++|-++       ++..  .
T Consensus        35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~--~  111 (296)
T COG3596          35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQL--Y  111 (296)
T ss_pred             cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHH--H
Confidence            35677999999999999999999999877776654222222222222222 225677899998433       4444  6


Q ss_pred             HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--------cc--------HHHH
Q 005908          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--------MA--------VQDS  555 (670)
Q Consensus       492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--------~~--------~~~~  555 (670)
                      ..++.+.|++++++|+.++.- .-..+++..+.....    +.++++++|.+|...+.        ..        .+.+
T Consensus       112 ~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~  186 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGL----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA  186 (296)
T ss_pred             HHHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhcc----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence            788999999999999999742 334455555554433    48999999999986531        11        1122


Q ss_pred             HHHHHHhC-CCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCC----------CCcccccHHHHHHH-hhhhhhhhcchh
Q 005908          556 ARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP----------ETETGRNRKRYRHL-VNSSLVFVSGVP  622 (670)
Q Consensus       556 ~~~~~~~~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~  622 (670)
                      +.+.+... ..|++.+|+..+ |++++..++++.+......+-          .....+.+.++.+. +.+.+..++.++
T Consensus       187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~~~~~~~~~q~~~~~~~s~v~~~~~ti~~~s  266 (296)
T COG3596         187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARLQDELRTQSARTQARTQFLESPVDRIFDTIQTVS  266 (296)
T ss_pred             HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhhhhHHHHHHHHHHHHHHhhcchHHHHHHHHhhch
Confidence            22222221 347999999999 999999999999875444321          11123333344444 566777788777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 005908          623 VLLLLYFLHMHTWTCIVLITILHIYSWG  650 (670)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (670)
                      .++.++..++...+.+|+.+++++|+|+
T Consensus       267 ~i~~~~~tI~~~~~~~V~~va~av~~~f  294 (296)
T COG3596         267 LIYSVARTIIRAVRPTVVSVARAVWDLF  294 (296)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            8999999999999999999999999986

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.76  E-value=1.8e-17  Score=154.65  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=108.7

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhh----chHhhc--ccccEE
Q 005908          428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL--ASCDVT  501 (670)
Q Consensus       428 ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~--~~ad~v  501 (670)
                      |+|.+|||||||+|++.+........++++.......+.++|  ..+.+||++|...+....    ....++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999864443334444444445566664  467889999986554310    023444  499999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ++|+|+++..+   ...+...+...      ++|+++|+||+|+.+........+.+++.++.+ ++++||++| |+.++
T Consensus        79 i~v~d~~~~~~---~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa~~~~~~~~l  148 (158)
T cd01879          79 VNVVDATNLER---NLYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSARKGEGIDEL  148 (158)
T ss_pred             EEEeeCCcchh---HHHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEccCCCCHHHH
Confidence            99999988644   23444444443      699999999999977544444556777777765 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      ++.+.+.++
T Consensus       149 ~~~l~~~~~  157 (158)
T cd01879         149 KDAIAELAE  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999988643

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK00089 era GTPase Era; Reviewed

Probab=99.76  E-value=4e-17  Score=168.43  Aligned_cols=182  Identities=14%  Similarity=0.189  Sum_probs=119.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHhhccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALAS  497 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~~~  497 (670)
                      -.|+|+|+||||||||+|+|++.....++..+.++......+... +...+.++||+|......      .......+..
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~   84 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD   84 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence            569999999999999999999998876665322222223333333 336778899999532111      1114557789


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +|++++|+|++++.+ .........+...      +.|+++|+||+|+... .......+.+.+..+..+++++||++| 
T Consensus        85 ~D~il~vvd~~~~~~-~~~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         85 VDLVLFVVDADEKIG-PGDEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             CCEEEEEEeCCCCCC-hhHHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            999999999998433 2223333333322      5899999999999843 334556666666667677999999999 


Q ss_pred             ChHHHHHHHHHHHhCCC-CCCCCCcccccHH-HHHHHhhh
Q 005908          576 DLNNVFSRIIWAAEHPH-LNIPETETGRNRK-RYRHLVNS  613 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~  613 (670)
                      |++++++.+.+.+.... ..+++.......+ ...+.+++
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe  197 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIRE  197 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999875433 3333333333322 33444443

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=6.4e-18  Score=185.01  Aligned_cols=159  Identities=18%  Similarity=0.115  Sum_probs=111.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhh-hH
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGK-LN   77 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~   77 (670)
                      ..+||+|+|++|||||||+|+|++..+  ....+++.... ....+..++..+.+|||||+.+          +... ..
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~-~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDP-VDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCc-ceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence            468999999999999999999999874  33344433221 2223334566789999999632          1111 12


Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEE
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVE  155 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  155 (670)
                      .+++.+|++++|+|++++.++.+..  ++..+...  ++|+|+|+||+|+......   ......+...+.  ...++++
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~~--~~piIiV~NK~Dl~~~~~~---~~~~~~i~~~l~~~~~~~~~~  361 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR--VLSMVIEA--GRALVLAFNKWDLVDEDRR---YYLEREIDRELAQVPWAPRVN  361 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChhHH---HHHHHHHHHhcccCCCCCEEE
Confidence            4678999999999999998888764  66666554  7999999999999753211   111122222222  1247899


Q ss_pred             eCcccCCCchHHHHHHHHHHcC
Q 005908          156 CSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      +||++|.||+++|+.+.+.+..
T Consensus       362 ~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        362 ISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887653

>PRK00089 era GTPase Era; Reviewed

Probab=99.76  E-value=2.7e-17  Score=169.68  Aligned_cols=172  Identities=21%  Similarity=0.280  Sum_probs=116.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHh
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEEL   80 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~   80 (670)
                      +.-.|+|+|+||||||||+|+|++.++...  .+.+.. ..+......++..+.+|||||......        .....+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-ccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            456799999999999999999999885432  222211 112222333557899999999765332        223567


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      ..+|++++|+|+++..+..  ...+...++..  +.|+++|+||+|+.....  ........+...++ ..+++++||++
T Consensus        83 ~~~D~il~vvd~~~~~~~~--~~~i~~~l~~~--~~pvilVlNKiDl~~~~~--~l~~~~~~l~~~~~-~~~i~~iSA~~  155 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGPG--DEFILEKLKKV--KTPVILVLNKIDLVKDKE--ELLPLLEELSELMD-FAEIVPISALK  155 (292)
T ss_pred             hcCCEEEEEEeCCCCCChh--HHHHHHHHhhc--CCCEEEEEECCcCCCCHH--HHHHHHHHHHhhCC-CCeEEEecCCC
Confidence            8999999999998832222  22355555543  789999999999974322  13344455555444 34799999999


Q ss_pred             CCCchHHHHHHHHHHcCCCCCCCcccccccc
Q 005908          161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLK  191 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~  191 (670)
                      |.|++++++.+.+.+.. .++.|+.+.....
T Consensus       156 ~~gv~~L~~~L~~~l~~-~~~~y~~~~~td~  185 (292)
T PRK00089        156 GDNVDELLDVIAKYLPE-GPPYYPEDQITDR  185 (292)
T ss_pred             CCCHHHHHHHHHHhCCC-CCCCCCCCCCCCC
Confidence            99999999999887654 3356665544433

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=5.8e-18  Score=153.26  Aligned_cols=166  Identities=12%  Similarity=0.175  Sum_probs=131.3

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....++++|+++|-.|+||||++++|..+++....|++.....   .+...++.+.+||.+|++.++..|..|+++.+++
T Consensus        12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEE
Confidence            3467889999999999999999999999988887776544433   3445589999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcccCCCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQV  164 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~gi  164 (670)
                      |||+|.+|++.+.+..+.+...+.... .+.|+++.+||.|+...-......+.+ .+ ..+. ..-.+..|+|.+|+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L-~l-~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKL-GL-HSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHh-hh-hccCCCCcEEeeccccccccH
Confidence            999999999999999988888886543 589999999999998764431111111 01 1111 1125788999999999


Q ss_pred             hHHHHHHHHHHcC
Q 005908          165 PDVFYYAQKAVLH  177 (670)
Q Consensus       165 ~~l~~~i~~~~~~  177 (670)
                      .|-++++...+..
T Consensus       167 ~egl~wl~~~~~~  179 (181)
T KOG0070|consen  167 YEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

>cd01895 EngA2 EngA2 subfamily

Probab=99.76  E-value=2.2e-17  Score=156.40  Aligned_cols=157  Identities=21%  Similarity=0.214  Sum_probs=108.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-----------hhHH
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-----------KLNE   78 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~   78 (670)
                      .++|+++|++|+|||||+|+|++..+.  ...+++.... ....+..++..+.+|||||..+...           ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS-IDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc-eeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            579999999999999999999987632  2233222111 1223334556789999999754311           1124


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEEEe
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVEC  156 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  156 (670)
                      +++.+|++++|+|++++.+.....  +...+...  ++|+++|+||+|+...... ........+.+.++.  ..+++++
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLR--IAGLILEE--GKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHH--HHHHHHhc--CCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEEE
Confidence            568999999999999887766543  45555444  7899999999999765322 233333444444431  2479999


Q ss_pred             CcccCCCchHHHHHHHHH
Q 005908          157 SATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~  174 (670)
                      ||+++.|++++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.75  E-value=1.8e-17  Score=157.10  Aligned_cols=158  Identities=24%  Similarity=0.298  Sum_probs=121.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+++|..|+|||||++++..+.... ..||.+  +.+..+...  ...+.+||..|+..++.+  +..++.++|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~--~~~~~~~d~gG~~~~~~~--w~~y~~~~~~   84 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYK--GYSLTIWDLGGQESFRPL--WKSYFQNADG   84 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEET--TEEEEEEEESSSGGGGGG--GGGGHTTESE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeC--cEEEEEEecccccccccc--ceeeccccce
Confidence            677999999999999999999999875443 335554  444555554  467788999999888888  8899999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH--hC--CC-CcEEeecccC
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE--LG--IE-PPIPVSMKSK  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--~~--~~-~~~~vSA~~g  575 (670)
                      +|+|+|+++...+.+....+..+.......  +.|+++++||.|+.+.- ..+++.+....  +.  .+ .++.+||++|
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~--~~piLIl~NK~D~~~~~-~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g  161 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDPELK--DIPILILANKQDLPDAM-SEEEIKEYLGLEKLKNKRPWSVFSCSAKTG  161 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSGGGT--TSEEEEEEESTTSTTSS-THHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred             eEEEEecccceeecccccchhhhcchhhcc--cceEEEEeccccccCcc-hhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence            999999999988988888888877654333  69999999999987632 23333332211  11  11 4789999999


Q ss_pred             -ChHHHHHHHHHHH
Q 005908          576 -DLNNVFSRIIWAA  588 (670)
Q Consensus       576 -~v~~l~~~l~~~~  588 (670)
                       |+.+.+++|.+.+
T Consensus       162 ~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  162 EGVDEGLEWLIEQI  175 (175)
T ss_dssp             BTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcC
Confidence             9999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.75  E-value=3.9e-17  Score=154.06  Aligned_cols=156  Identities=16%  Similarity=0.173  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      .|+|+|.+|||||||+|+|.+.++...+.++++.......++.. +....+.+||++|++.+..+  +...+..+|++++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~--~~~~~~~~d~il~   79 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM--RARGASLTDIAIL   79 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH--HHHHHhhcCEEEE
Confidence            59999999999999999999988776544443333333444443 13567788999999888776  6677899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHH----hC-CCCcEEeecccC-
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQE----LG-IEPPIPVSMKSK-  575 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~----~~-~~~~~~vSA~~g-  575 (670)
                      |+|++++...+ ....+..+...      ++|+++|+||+|+......  ......+...    .+ ..+++++||++| 
T Consensus        80 v~d~~~~~~~~-~~~~~~~~~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (168)
T cd01887          80 VVAADDGVMPQ-TIEAIKLAKAA------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE  152 (168)
T ss_pred             EEECCCCccHH-HHHHHHHHHHc------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence            99999864322 22223333332      6999999999998753211  1112222111    11 136999999999 


Q ss_pred             ChHHHHHHHHHHHh
Q 005908          576 DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 ~v~~l~~~l~~~~~  589 (670)
                      |+++++++|.+...
T Consensus       153 gi~~l~~~l~~~~~  166 (168)
T cd01887         153 GIDDLLEAILLLAE  166 (168)
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=5.2e-17  Score=171.55  Aligned_cols=191  Identities=17%  Similarity=0.144  Sum_probs=128.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh----hh-hchHhhcccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALASC  498 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~~a  498 (670)
                      ..|+|||.||||||||+|+|++........|.|+.....-.+..+ ....+.++|++|..+-.    .+ .+....+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            479999999999999999999876533323433323333444444 34457789999853211    01 1134568899


Q ss_pred             cEEEEEEECC---CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-CcEEeeccc
Q 005908          499 DVTIFVYDSS---DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSMKS  574 (670)
Q Consensus       499 d~vllv~D~s---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSA~~  574 (670)
                      |++++|+|++   +...++....|.+++..+...- .++|+++|+||+|+.......+..+++.+.++.. +++++||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L-~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKL-AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhh-cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999998   4556777788888887653210 1589999999999976444445556666665543 689999999


Q ss_pred             C-ChHHHHHHHHHHHhCCCC-CCCCCccccc-HHHHHHHhhhhhh
Q 005908          575 K-DLNNVFSRIIWAAEHPHL-NIPETETGRN-RKRYRHLVNSSLV  616 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~  616 (670)
                      + |++++++.|.+.+..... .+++...... +-...+++++.+.
T Consensus       318 g~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~  362 (390)
T PRK12298        318 GLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE  362 (390)
T ss_pred             CcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence            9 999999999998855333 3334333333 2355566655553

>PTZ00099 rab6; Provisional

Probab=99.75  E-value=2.2e-17  Score=156.28  Aligned_cols=140  Identities=13%  Similarity=0.141  Sum_probs=109.9

Q ss_pred             CCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 005908           35 ESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL  112 (670)
Q Consensus        35 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~  112 (670)
                      +.|.+.+.++.+...  ....+....+.+.||||+|++.+...+..++++||++|+|||++++.+|+.+. .|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence            346666544444322  33455667899999999999999999999999999999999999999999997 488877553


Q ss_pred             -CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          113 -EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       113 -~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                       .++.|++||+||+|+...+.+ .. +....++..++.  .+++|||++|.||+++|+++.+.+....
T Consensus        82 ~~~~~piilVgNK~DL~~~~~v-~~-~e~~~~~~~~~~--~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRKV-TY-EEGMQKAQEYNT--MFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cCCCCeEEEEEECcccccccCC-CH-HHHHHHHHHcCC--EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence             357899999999999765555 33 334556666653  6899999999999999999999886543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=4.4e-17  Score=172.12  Aligned_cols=173  Identities=14%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccC-CceeEEEEeCCCCccch-------hhhHHHhccCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENK-------GKLNEELKRAD   84 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad   84 (670)
                      .|+|||.||||||||+|+|++.+. +..+|.++.... ...+.. +...+.++||||..+..       .....+++.+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~-~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPN-LGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcE-EEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999998763 222443222211 122222 34569999999986421       12235688999


Q ss_pred             EEEEEEECC---ChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           85 AVVLTYACN---QQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        85 ~ii~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      ++++|+|++   +...++... .|.+.+..+.   .++|+++|+||+|+.....   ..+.+..+.+.++...+++++||
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e---l~~~l~~l~~~~~~~~~Vi~ISA  315 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEE---AEERAKAIVEALGWEGPVYLISA  315 (390)
T ss_pred             EEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHH---HHHHHHHHHHHhCCCCCEEEEEC
Confidence            999999988   445666655 4777777653   3689999999999865322   22334445444432225899999


Q ss_pred             ccCCCchHHHHHHHHHHcCCCCCCCccccccccH
Q 005908          159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKP  192 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~  192 (670)
                      +++.||+++++.+.+.+.. .++.|+.+.....+
T Consensus       316 ~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~td~~  348 (390)
T PRK12298        316 ASGLGVKELCWDLMTFIEE-NPREEAEEAEAPEK  348 (390)
T ss_pred             CCCcCHHHHHHHHHHHhhh-CcccCCcccccCcc
Confidence            9999999999999987754 34555555554433

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.75  E-value=2.1e-17  Score=171.09  Aligned_cols=156  Identities=20%  Similarity=0.243  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCccc-CCceeEEEEeCCCCccch----hhhH---HHhccC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----GKLN---EELKRA   83 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~----~~~~---~~~~~a   83 (670)
                      ..|+|||.||||||||+|+|++.+.. .++|.++....+. .+. .+...+.+|||||+.+..    .+..   ..++.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            57999999999999999999987632 2233322111111 122 234789999999985322    2223   445679


Q ss_pred             CEEEEEEECCCh---hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           84 DAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        84 d~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      +++++|+|+++.   ++++.+. .|.+++..+.   .++|+++|+||+|+.....   ..+..+.+.+.++  .+++++|
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~---~~~~~~~l~~~~~--~~vi~iS  310 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEEE---LAELLKELKKALG--KPVFPIS  310 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChHH---HHHHHHHHHHHcC--CcEEEEE
Confidence            999999999976   6677776 4877776653   3799999999999975422   2334445555554  3699999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 005908          158 ATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~  175 (670)
                      |+++.||+++++.+.+.+
T Consensus       311 Aktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       311 ALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCcCHHHHHHHHHHHh
Confidence            999999999999988753

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.74  E-value=7.9e-17  Score=141.40  Aligned_cols=160  Identities=21%  Similarity=0.247  Sum_probs=125.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +.+++|.|+|..|+||||++++|.+...... .||.+  +.++.+..+  ...+.+||..|+...++.  +..|+..+|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i-~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~--W~nYfestdg   86 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDTI-SPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSY--WKNYFESTDG   86 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCcccc-CCccc--eeeEEEEec--ceEEEEEEcCCcchhHHH--HHHhhhccCe
Confidence            3479999999999999999999999873333 35544  666666665  367888999999999998  9999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-----HHHHHHHHHHhCCCCcEEeecccC
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-----VQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      +|||+|++|+..+++....+..+.....-.  +.|+++++||.|+...-..     .-..+++++...++ ++.+||.+|
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eerla--G~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~tg  163 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEERLA--GAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR-LVKCSAVTG  163 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhhhc--CCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce-EEEEecccc
Confidence            999999999988888887777765432222  7899999999999842111     22344555555665 999999999


Q ss_pred             -ChHHHHHHHHHHHhC
Q 005908          576 -DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~  590 (670)
                       ++.+-++++...+..
T Consensus       164 e~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence             999999999987764

>cd01894 EngA1 EngA1 subfamily

Probab=99.74  E-value=1.5e-17  Score=154.81  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=103.1

Q ss_pred             EEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHhccCCE
Q 005908           16 VVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRADA   85 (670)
Q Consensus        16 ~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad~   85 (670)
                      +++|.+|||||||+|+|++..  +....+++... .........+..+.+|||||+..+..        .....++.+|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            589999999999999999876  33333332211 12223334567899999999887543        33467889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      +++|+|..+..+....  .+...++..  +.|+++|+||+|+......       ......++ ..+++++||++|.|++
T Consensus        80 ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~~-------~~~~~~~~-~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          80 ILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEEDE-------AAEFYSLG-FGEPIPISAEHGRGIG  147 (157)
T ss_pred             EEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHHH-------HHHHHhcC-CCCeEEEecccCCCHH
Confidence            9999998876554443  255556655  6999999999999754221       12223333 2368999999999999


Q ss_pred             HHHHHHHHH
Q 005908          166 DVFYYAQKA  174 (670)
Q Consensus       166 ~l~~~i~~~  174 (670)
                      ++++++.+.
T Consensus       148 ~l~~~l~~~  156 (157)
T cd01894         148 DLLDAILEL  156 (157)
T ss_pred             HHHHHHHhh
Confidence            999998864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.74  E-value=6.7e-17  Score=150.16  Aligned_cols=156  Identities=24%  Similarity=0.379  Sum_probs=119.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|+|||||+|++.+..+...+.++++.++....+..++....+.+||++|+..+..+  .....+.++.++.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i~   79 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI--RRLYYRAVESSLR   79 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH--HHHHHhhhhEEEE
Confidence            79999999999999999999999866555567766666655666543467788999998888776  6667788999999


Q ss_pred             EEECCCc-ccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          504 VYDSSDE-YSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       504 v~D~s~~-~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ++|.... .++.... .+...+......   +.|+++|+||+|+.... ............+..+++++||++| |+.++
T Consensus        80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        80 VFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHH
Confidence            9999877 6666655 666666655432   58999999999998744 3333444444555556999999999 99999


Q ss_pred             HHHHH
Q 005908          581 FSRII  585 (670)
Q Consensus       581 ~~~l~  585 (670)
                      ++.|-
T Consensus       156 ~~~l~  160 (161)
T TIGR00231       156 FKIVE  160 (161)
T ss_pred             HHHhh
Confidence            98863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.74  E-value=1.8e-17  Score=154.36  Aligned_cols=141  Identities=17%  Similarity=0.157  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch----hhhHHHhccCCEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK----GKLNEELKRADAVVLT   89 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~ad~ii~v   89 (670)
                      +|+++|++|||||||+|+|.+..... . .     .....+...    .+|||||+....    ......++++|++++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~-~-----~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v   71 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA-R-K-----TQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV   71 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC-c-c-----ceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence            79999999999999999987653211 1 1     111122222    269999974222    2223457899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      +|+++..++..   .|+..+   ..++|+++++||+|+.+..     .+....+.++.+...+++++||++|.||+++|+
T Consensus        72 ~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         72 HGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDAD-----VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCccc-----HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            99998876533   233332   2378999999999986421     233455555665434899999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      .+.+.+.
T Consensus       141 ~l~~~~~  147 (158)
T PRK15467        141 YLASLTK  147 (158)
T ss_pred             HHHHhch
Confidence            9887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.74  E-value=2.2e-17  Score=157.47  Aligned_cols=153  Identities=17%  Similarity=0.143  Sum_probs=98.0

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhhhH
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLN   77 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~   77 (670)
                      +....++|+|+|++|||||||+|+|++..+.....+..+.+.....+..+ -.+.+|||||...          +.....
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            34678899999999999999999999986443322222222211111111 2699999999642          222333


Q ss_pred             HHhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908           78 EELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV  154 (670)
Q Consensus        78 ~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (670)
                      .+++.   +|++++|+|++++.+..+..  +...+...  ++|+++|+||+|+..........+.++......+...+++
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~  168 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ  168 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence            45553   58999999998866655543  45666555  7999999999998753221011222333333332123699


Q ss_pred             EeCcccCCCch
Q 005908          155 ECSATTMIQVP  165 (670)
Q Consensus       155 ~~SA~~~~gi~  165 (670)
                      ++||++|+||+
T Consensus       169 ~~Sa~~g~gi~  179 (179)
T TIGR03598       169 LFSSLKKTGID  179 (179)
T ss_pred             EEECCCCCCCC
Confidence            99999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.73  E-value=5e-17  Score=151.24  Aligned_cols=145  Identities=23%  Similarity=0.236  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHHhcc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKR   82 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~   82 (670)
                      ++|+++|++|+|||||++++.+..+.  ...+++.... ....+...+.++.+|||||..++...        ....+..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999988743  2233332221 12234445778999999998655322        2356789


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      +|++++|+|++++.+...... +..     ..++|+++|+||+|+.+....         ....  ...+++++||+++.
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~~---------~~~~--~~~~~~~~Sa~~~~  143 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSEL---------LSLL--AGKPIIAISAKTGE  143 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCcccc---------cccc--CCCceEEEECCCCC
Confidence            999999999998887776542 222     347999999999998754221         1111  12479999999999


Q ss_pred             CchHHHHHHHHHH
Q 005908          163 QVPDVFYYAQKAV  175 (670)
Q Consensus       163 gi~~l~~~i~~~~  175 (670)
                      |++++++++.+.+
T Consensus       144 ~v~~l~~~l~~~~  156 (157)
T cd04164         144 GLDELKEALLELA  156 (157)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999887643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.73  E-value=1.6e-17  Score=147.17  Aligned_cols=113  Identities=31%  Similarity=0.427  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC-CC-CCCCCCC-eE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVP-EK-VPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~-~~-~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ||+|+|++|||||||+++|++..+. .. .....+. .. ...........+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876 11 1111111 11 1223334455699999999988888778889999999999


Q ss_pred             EECCChhhHHHHHHH--HHHHHHhcCCCCCEEEEEeCCC
Q 005908           90 YACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLD  126 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~--~~~~l~~~~~~~pvilv~NK~D  126 (670)
                      ||++++.+++.+.+.  |+..++...+++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999998643  6666666667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.73  E-value=4.8e-17  Score=157.32  Aligned_cols=145  Identities=19%  Similarity=0.199  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------CCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLE--RPFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~--~~~~~~~------------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~  490 (670)
                      +|+++|.+|||||||+++|++  +.+...+            ..+.+..+......+.++...+.+||++|++.+...  
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--   81 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE--   81 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH--
Confidence            799999999999999999997  4443322            012223333333344445678889999999998887  


Q ss_pred             hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHh------
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL------  562 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~------  562 (670)
                      ...+++.+|++++|+|++++. +.....++..+...      ++|+++|+||+|+......  .++..++...+      
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ  154 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence            788999999999999999853 34444444444332      6899999999999753321  33344443332      


Q ss_pred             -CCCCcEEeecccC-ChHH
Q 005908          563 -GIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       563 -~~~~~~~vSA~~g-~v~~  579 (670)
                       +. +++++||++| |+.+
T Consensus       155 ~~~-~iv~~Sa~~g~~~~~  172 (194)
T cd01891         155 LDF-PVLYASAKNGWASLN  172 (194)
T ss_pred             Ccc-CEEEeehhccccccc
Confidence             33 5999999999 8743

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01889 SelB_euk SelB subfamily

Probab=99.73  E-value=3.2e-17  Score=158.34  Aligned_cols=162  Identities=15%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC----CCCCC----CCCC-CCCeEeCCcc------------cCCceeEEEEeCCCCcc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE----SVPEK----VPPV-HAPTRLPPDF------------YPDRVPVTIIDTSSSLE   71 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~----~~~~~----~~~~-~~~~~~~~~~------------~~~~~~~~i~Dt~G~~~   71 (670)
                      ++|+++|++|||||||+++|++.    .+...    .+++ .........+            ...++.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    11111    1111 1111111111            13377899999999865


Q ss_pred             chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc-chhhhhhHHHHHh---
Q 005908           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF---  147 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~---  147 (670)
                      +........+.+|++++|+|+++......... +. .....  ++|+++|+||+|+....... ...+..+.+...+   
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            54444455677899999999987554443321 22 22333  67999999999987432210 1111112121111   


Q ss_pred             c-cCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       148 ~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      + ...+++++||++|.|++++++.+...+..|
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            1 123799999999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.73  E-value=1.9e-16  Score=156.42  Aligned_cols=163  Identities=25%  Similarity=0.331  Sum_probs=130.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+++|.++.+...+.+|.+..+........+...++.+||++|+++++.+  +..++.++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~--~~~y~~~~~~~l   82 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSL--RPEYYRGANGIL   82 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHH--HHHHhcCCCEEE
Confidence            389999999999999999999999999998888887777666666545677889999999999998  889999999999


Q ss_pred             EEEECCC-cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-------------HHHHHHHHHHh--CCCC
Q 005908          503 FVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQDSARVTQEL--GIEP  566 (670)
Q Consensus       503 lv~D~s~-~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-------------~~~~~~~~~~~--~~~~  566 (670)
                      +|+|.++ ..+++....|...+......   ..|+++|+||+|+......             ...........  ....
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAPD---DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA  159 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCCC---CceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc
Confidence            9999998 55666677888888877642   5899999999999886421             11112222222  1223


Q ss_pred             cEEeecc--cC-ChHHHHHHHHHHHhC
Q 005908          567 PIPVSMK--SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       567 ~~~vSA~--~g-~v~~l~~~l~~~~~~  590 (670)
                      ++++||+  ++ ++.++|..+.+.+..
T Consensus       160 ~~~~s~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         160 LLETSAKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             eeEeecccCCCcCHHHHHHHHHHHHHH
Confidence            8999999  99 999999999998854

>cd04163 Era Era subfamily

Probab=99.73  E-value=6.1e-17  Score=152.04  Aligned_cols=157  Identities=20%  Similarity=0.228  Sum_probs=108.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-CCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHhc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELK   81 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~   81 (670)
                      ...+|+++|.+|+|||||+|++.+.......+. ..........+...+..+.+|||||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998874332111 1111112223445568899999999865432        2235688


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      .+|++++|+|+++..+..  ...+...+...  +.|+++|+||+|+......  ..+....+....+ ..+++++|++++
T Consensus        82 ~~d~i~~v~d~~~~~~~~--~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~s~~~~  154 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG--DEFILELLKKS--KTPVILVLNKIDLVKDKED--LLPLLEKLKELGP-FAEIFPISALKG  154 (168)
T ss_pred             hCCEEEEEEECCCccCch--HHHHHHHHHHh--CCCEEEEEEchhccccHHH--HHHHHHHHHhccC-CCceEEEEeccC
Confidence            899999999998873222  22355556555  7899999999999743222  3344444544443 247999999999


Q ss_pred             CCchHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKA  174 (670)
Q Consensus       162 ~gi~~l~~~i~~~  174 (670)
                      .|++++++.+.+.
T Consensus       155 ~~~~~l~~~l~~~  167 (168)
T cd04163         155 ENVDELLEEIVKY  167 (168)
T ss_pred             CChHHHHHHHHhh
Confidence            9999999988754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.72  E-value=6.5e-17  Score=176.36  Aligned_cols=161  Identities=18%  Similarity=0.173  Sum_probs=113.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh-----------h
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-----------L   76 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~   76 (670)
                      ...++|+++|++|||||||+|+|++...  ....+++.... ....+..++..+.+|||||+.+....           .
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS-IDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc-EeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4568999999999999999999998763  33344422221 22233345568999999997543321           1


Q ss_pred             HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEE
Q 005908           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV  154 (670)
Q Consensus        77 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (670)
                      ..+++.+|++|+|+|++++.+..+..  +...+...  ++|+++|+||+|+... .. ...+....+...+..  ..+++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKD-EK-TREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCC-HH-HHHHHHHHHHHhcccCCCCceE
Confidence            24789999999999999887777653  66666555  7999999999999721 11 122333333333332  24799


Q ss_pred             EeCcccCCCchHHHHHHHHHHcC
Q 005908          155 ECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      ++||++|.|++++|+.+.+....
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999886543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.72  E-value=7.1e-17  Score=156.52  Aligned_cols=165  Identities=15%  Similarity=0.141  Sum_probs=107.2

Q ss_pred             CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc----------cchh
Q 005908            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKG   74 (670)
Q Consensus         5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~   74 (670)
                      +.......++|+++|++|||||||+|+|++.++.....++.+.+.. ..+...+..+.+|||||..          .+..
T Consensus        17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL-INFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE-EEEEecCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            3445556789999999999999999999998754443333333321 1111224689999999953          2223


Q ss_pred             hhHHHhccC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC
Q 005908           75 KLNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE  151 (670)
Q Consensus        75 ~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (670)
                      ....+++.+   +++++|+|.+++.+....  .+...+...  ++|+++++||+|+.+........+.+.......  ..
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~~  169 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--DD  169 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--CC
Confidence            334455544   678899998776554432  244455544  789999999999875432201112222232222  23


Q ss_pred             eEEEeCcccCCCchHHHHHHHHHHc
Q 005908          152 TCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      +++++||++|.|++++++.+.+.+.
T Consensus       170 ~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        170 EVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            6999999999999999998876643

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.72  E-value=4.5e-17  Score=154.86  Aligned_cols=152  Identities=20%  Similarity=0.221  Sum_probs=101.7

Q ss_pred             EEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCccc----hhh---hHHHhccCCEEE
Q 005908           17 VVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN----KGK---LNEELKRADAVV   87 (670)
Q Consensus        17 ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~----~~~---~~~~~~~ad~ii   87 (670)
                      |+|++|||||||+|+|.+..+ ....+++.... ....+... +..+.+|||||+.+.    ...   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEP-NLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecC-cceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999874 22232211111 11223344 788999999997431    122   234578899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHHhcC--------CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeE
Q 005908           88 LTYACNQQ------STLSRLSSYWLPELRRLE--------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (670)
Q Consensus        88 ~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (670)
                      +|+|+++.      .+++.... |...+....        .++|+++|+||+|+...... . .........  ....++
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~-~~~~~~~~~--~~~~~~  154 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL-E-EELVRELAL--EEGAEV  154 (176)
T ss_pred             EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH-H-HHHHHHHhc--CCCCCE
Confidence            99999988      46766653 666665432        37999999999999765433 1 110111111  122469


Q ss_pred             EEeCcccCCCchHHHHHHHHH
Q 005908          154 VECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       154 ~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      +++||+++.|++++++.+...
T Consensus       155 ~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         155 VPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEehhhhcCHHHHHHHHHhh
Confidence            999999999999999988653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=1.2e-16  Score=169.40  Aligned_cols=155  Identities=18%  Similarity=0.204  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccC-CceeEEEEeCCCCccc----hhhhH---HHhccCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLEN----KGKLN---EELKRAD   84 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~----~~~~~---~~~~~ad   84 (670)
                      .|+|||.||||||||+|+|++.+.. .++|.++...... .+.. ++..+.+|||||..+.    ..+..   ..++.++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            7999999999999999999987632 2233321111111 1222 2678999999997532    12233   3456699


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        85 ~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      ++|+|+|+++.   +.+++.. .|..++..+.   .++|++||+||+|+...      .+..+.+.+.++  .+++++||
T Consensus       239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~iSA  309 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPISA  309 (424)
T ss_pred             EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEEeC
Confidence            99999999864   5666665 4888887754   37999999999998431      233455556655  36999999


Q ss_pred             ccCCCchHHHHHHHHHHcCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~  178 (670)
                      ++++|++++++.+.+.+...
T Consensus       310 ~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        310 LTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CCCCCHHHHHHHHHHHHHhC
Confidence            99999999999998877543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.72  E-value=1.9e-16  Score=152.42  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCc--------------ccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTT--------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~--------------~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~  490 (670)
                      +|+|+|.+|+|||||+|+|++.........+.              +............+...+.+||++|...+...  
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE--   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH--
Confidence            48999999999999999999887765442211              01111112222223467788999998777666  


Q ss_pred             hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC----
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG----  563 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~----  563 (670)
                      +..+++.+|++++|+|++++.+.. ...++..+...      +.|+++|+||+|+......   .+.+++..+..+    
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~------~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREG------GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST  151 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHC------CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence            677889999999999999876543 33444444432      6999999999999863322   233333333322    


Q ss_pred             ---------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          564 ---------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       564 ---------~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                               ..+++++||++| |++++++.+.+.+.
T Consensus       152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                     246899999999 99999999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK04213 GTP-binding protein; Provisional

Probab=99.72  E-value=1.1e-16  Score=155.94  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=103.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC-----------hhhHhhhhc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILS  490 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g-----------~~~~~~~~~  490 (670)
                      ..++|+++|++|||||||+|+|.+..+.....++++  +....+...    .+.+||++|           ++.++.+  
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~--   79 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE--   79 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH--
Confidence            458999999999999999999999876543334332  222233322    467899999           4555554  


Q ss_pred             hHhhc----ccccEEEEEEECCCcccH----------HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHH
Q 005908          491 NKEAL----ASCDVTIFVYDSSDEYSW----------KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA  556 (670)
Q Consensus       491 ~~~~~----~~ad~vllv~D~s~~~s~----------~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~  556 (670)
                      +..++    ..++++++|+|.++...+          .........+...      ++|+++|+||+|+.+..  .+..+
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~p~iiv~NK~Dl~~~~--~~~~~  151 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL------GIPPIVAVNKMDKIKNR--DEVLD  151 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc------CCCeEEEEECccccCcH--HHHHH
Confidence            33333    456889999998653221          0111222222222      69999999999997633  34566


Q ss_pred             HHHHHhCCC--------CcEEeecccCChHHHHHHHHHHHhC
Q 005908          557 RVTQELGIE--------PPIPVSMKSKDLNNVFSRIIWAAEH  590 (670)
Q Consensus       557 ~~~~~~~~~--------~~~~vSA~~g~v~~l~~~l~~~~~~  590 (670)
                      ++++.++..        +++++||++||+++++++|.+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~SA~~ggi~~l~~~l~~~~~~  193 (201)
T PRK04213        152 EIAERLGLYPPWRQWQDIIAPISAKKGGIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHHhcCCccccccCCcEEEEecccCCHHHHHHHHHHhhcC
Confidence            777777751        4799999999999999999987653

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.72  E-value=5.7e-17  Score=150.96  Aligned_cols=139  Identities=18%  Similarity=0.197  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh-----hhHhhhhchHhhccccc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKILSNKEALASCD  499 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----~~~~~~~~~~~~~~~ad  499 (670)
                      +|+++|++|||||||+|++.+....  ...+.+       +...+.    .+||++|.     +.+..   ....++.+|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~---~~~~~~~ad   66 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHA---LITTLQDVD   66 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHH---HHHHHhcCC
Confidence            7999999999999999998875421  111221       112211    14888885     22222   234578999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSA~~g-~v  577 (670)
                      ++++|+|++++.++.  ..|+..+.   .    ++|+++++||+|+.+.  ..+...++++++++ .|++++||++| |+
T Consensus        67 ~il~v~d~~~~~s~~--~~~~~~~~---~----~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi  135 (158)
T PRK15467         67 MLIYVHGANDPESRL--PAGLLDIG---V----SKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDPQSV  135 (158)
T ss_pred             EEEEEEeCCCccccc--CHHHHhcc---C----CCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence            999999999887653  33433321   1    5899999999998652  34556677777776 37999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|+++.+.+.+
T Consensus       136 ~~l~~~l~~~~~~  148 (158)
T PRK15467        136 QQLVDYLASLTKQ  148 (158)
T ss_pred             HHHHHHHHHhchh
Confidence            9999999888754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=2e-17  Score=168.26  Aligned_cols=228  Identities=12%  Similarity=0.089  Sum_probs=147.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCC-----CCC--C--------CeE---eCCcccCCceeEEEEeCCCCccchhh
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVP-----PVH--A--------PTR---LPPDFYPDRVPVTIIDTSSSLENKGK   75 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-----~~~--~--------~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (670)
                      +|+|+|.+|+|||||+++|+.........     +..  +        ...   ....+.++++.+.+|||||..++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999998643211111     100  0        000   11123356788999999999888788


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEE
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      +..+++.+|++++|+|+++........  .+..+...  ++|+++++||+|+...    ...+....+...++...-.+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEK--LWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCCCeEEEE
Confidence            889999999999999998875554332  44455555  7899999999998754    244556667677765334567


Q ss_pred             eCcccCCCchHHHHHHHHHHcCCCC-CCC-----ccccccccHHHHHHH-HHHHHHhCCCCCCC-----CChHHHHHHhh
Q 005908          156 CSATTMIQVPDVFYYAQKAVLHPTA-PLF-----DHDEQTLKPRCVRAL-KRIFIICDHDMDGA-----LNDAELNEFQV  223 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~~~~-~~~-----~~~~~~~~~~~~~~l-~ri~~~~d~~~~~~-----l~~~el~~~q~  223 (670)
                      ++..+|.|+..+.+.+......... ..+     .........+++..| +.+....|..++.+     +..+++...-+
T Consensus       153 ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~  232 (268)
T cd04170         153 LPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR  232 (268)
T ss_pred             ecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence            7789999998888777655442211 000     001111112233333 44444444444444     44444433333


Q ss_pred             h----------hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908          224 K----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (670)
Q Consensus       224 ~----------~~~~~l~~~~~~~l~~~l~~~~~~~  249 (670)
                      +          +|+++....+++.+.+.+.+++|+|
T Consensus       233 ~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p  268 (268)
T cd04170         233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP  268 (268)
T ss_pred             HHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence            2          7889999999999999999998874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK11058 GTPase HflX; Provisional

Probab=99.71  E-value=1.4e-16  Score=170.19  Aligned_cols=155  Identities=17%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCC-CCCeEeCCcccCCceeEEEEeCCCCccc--hhhhH------HHhcc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLEN--KGKLN------EELKR   82 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~~~   82 (670)
                      .+|+|+|.||||||||+|+|++..+. .+.+++ .+.+.....+ .+...+.+|||+|....  ...+.      ..++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l-~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV-ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe-CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987743 233332 2222212222 22337899999998432  22222      44688


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      ||++|+|+|++++.+++.+.. |...+.... .++|+++|+||+|+......     ....  ...+ ...++++||++|
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~-~~~~v~ISAktG  347 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEEN-KPIRVWLSAQTG  347 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcC-CCceEEEeCCCC
Confidence            999999999999988877652 555554432 37999999999998643111     1111  1122 112589999999


Q ss_pred             CCchHHHHHHHHHHcC
Q 005908          162 IQVPDVFYYAQKAVLH  177 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~  177 (670)
                      .|++++++.+.+.+..
T Consensus       348 ~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        348 AGIPLLFQALTERLSG  363 (426)
T ss_pred             CCHHHHHHHHHHHhhh
Confidence            9999999999988743

>cd01894 EngA1 EngA1 subfamily

Probab=99.71  E-value=1.6e-16  Score=147.83  Aligned_cols=147  Identities=20%  Similarity=0.249  Sum_probs=101.4

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCC--CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----h-hchHhhcccc
Q 005908          427 LLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEALASC  498 (670)
Q Consensus       427 ~ivG~~~vGKSSLin~l~~~~~~~--~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~~~a  498 (670)
                      +++|.+|||||||+|+|++.....  ...+++. +.....+...  ...+.+||++|...+..     + ......++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~-~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTR-DRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCcee-CceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            589999999999999999876332  2223333 2333444444  25678899999765432     1 0134567899


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      |++++|+|+.++.+.... .....+...      +.|+++|+||+|+.+....    ......++..+++++||++| |+
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv  146 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGI  146 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCH
Confidence            999999999886554332 233333332      6999999999999874322    23334566656899999999 99


Q ss_pred             HHHHHHHHHH
Q 005908          578 NNVFSRIIWA  587 (670)
Q Consensus       578 ~~l~~~l~~~  587 (670)
                      +++++++.+.
T Consensus       147 ~~l~~~l~~~  156 (157)
T cd01894         147 GDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.71  E-value=2.1e-16  Score=169.42  Aligned_cols=169  Identities=18%  Similarity=0.110  Sum_probs=114.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChh----hHhhh-hchHhhcc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----GVKKI-LSNKEALA  496 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----~~~~~-~~~~~~~~  496 (670)
                      ....|+|||.||||||||+|+|.+........+.++.....-.++..+  ..+.++|++|..    ....+ ......+.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            347899999999999999999998765543334333334444555553  467889999942    11111 11345678


Q ss_pred             cccEEEEEEECCC----cccHHHHHHHHHHHHHhcCC--------CCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC
Q 005908          497 SCDVTIFVYDSSD----EYSWKRTKELLVEVARLGED--------SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI  564 (670)
Q Consensus       497 ~ad~vllv~D~s~----~~s~~~~~~~~~~i~~~~~~--------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  564 (670)
                      .+|++|+|+|+++    ++.+.++..+..++..+...        ...++|+|+|+||+|+.+.....+.........++
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~  315 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW  315 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence            8999999999985    23555666666666655421        11168999999999997643333333333344455


Q ss_pred             CCcEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908          565 EPPIPVSMKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       565 ~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      + ++++||+++ |+++++++|.+.+...+.
T Consensus       316 ~-Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        316 P-VFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             e-EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            4 999999999 999999999998865443

>cd04163 Era Era subfamily

Probab=99.70  E-value=4.2e-16  Score=146.32  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=106.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh------hchHhhcc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA  496 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~  496 (670)
                      ..+|+++|.+|+|||||+|++.+...................+... ....+.+||++|.......      ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999987654443222222222222222 3456778999995322211      01345678


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      .+|++++|+|++++.+ +....+...+...      +.|+++|+||+|+.. .....+....+....+..+++++|++++
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  154 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG  154 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence            9999999999998732 2223334444433      589999999999984 3333445555655555567999999999


Q ss_pred             -ChHHHHHHHHHH
Q 005908          576 -DLNNVFSRIIWA  587 (670)
Q Consensus       576 -~v~~l~~~l~~~  587 (670)
                       |++++++.|.+.
T Consensus       155 ~~~~~l~~~l~~~  167 (168)
T cd04163         155 ENVDELLEEIVKY  167 (168)
T ss_pred             CChHHHHHHHHhh
Confidence             999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.70  E-value=4.4e-16  Score=165.25  Aligned_cols=162  Identities=17%  Similarity=0.122  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh----Hhhh-hchHhhcccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALASC  498 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~a  498 (670)
                      ..|+++|.||||||||+|+|++........+.++.....-.+.++ ....+.++|++|..+    ...+ ......+..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            579999999999999999999877544333333322333344444 245677899998522    1112 1134556779


Q ss_pred             cEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          499 DVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       499 d~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      +++++|+|+++.   +++++...|..++..+.... .++|+++|+||+|+..   ..+..+.+.+.++. +++++||+++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L-~~kP~IVV~NK~DL~~---~~e~l~~l~~~l~~-~i~~iSA~tg  312 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL-LERPQIVVANKMDLPE---AEENLEEFKEKLGP-KVFPISALTG  312 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc-cCCcEEEEEeCCCCcC---CHHHHHHHHHHhCC-cEEEEeCCCC
Confidence            999999999864   67778888888887764321 1689999999999853   23455667777774 5999999999


Q ss_pred             -ChHHHHHHHHHHHhCC
Q 005908          576 -DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~  591 (670)
                       |++++++.|.+.+...
T Consensus       313 eGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        313 QGLDELLYAVAELLEET  329 (424)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence             9999999999887543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.70  E-value=1.1e-16  Score=158.71  Aligned_cols=204  Identities=15%  Similarity=0.173  Sum_probs=131.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC-------CCCCCC-----------eEeCCcccCCceeEEEEeCCCCccchhh
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKV-------PPVHAP-----------TRLPPDFYPDRVPVTIIDTSSSLENKGK   75 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~-------~~~~~~-----------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (670)
                      +|+++|++|+|||||+++|+...-....       .+..+.           ......+.+++.++.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999864311110       000000           0012234467889999999999999888


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEE
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      +..+++.+|++++|+|+++......  +.++..+++.  ++|+++++||+|+...    ...+.+..+...++..  ++.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~i~~~~~~~--~~~  150 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGA----DLEKVYQEIKEKLSSD--IVP  150 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCC----CHHHHHHHHHHHHCCC--eEE
Confidence            8999999999999999988654432  2467777766  7999999999998754    3456677777777642  333


Q ss_pred             eCcccCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCC-----CCCCChHHHHHHhhh------
Q 005908          156 CSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDM-----DGALNDAELNEFQVK------  224 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~-----~~~l~~~el~~~q~~------  224 (670)
                      +.--   ++...+        .        ......   ...++.+....|..+     ++.++.+|+...-++      
T Consensus       151 ~~~p---~~~~~~--------~--------~~~~~~---~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~  208 (237)
T cd04168         151 MQKV---GLAPNI--------C--------ETNEID---DEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK  208 (237)
T ss_pred             EECC---cEeeee--------e--------eeeecc---HHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence            2211   000000        0        000011   122233333333333     334555555444333      


Q ss_pred             ----hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908          225 ----CFNAPLQPAEIVGVKRVVQEKQHDG  249 (670)
Q Consensus       225 ----~~~~~l~~~~~~~l~~~l~~~~~~~  249 (670)
                          +|++++...++..|++.+.+.+|+|
T Consensus       209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~  237 (237)
T cd04168         209 VFPVYHGSALKGIGIEELLEGITKLFPTS  237 (237)
T ss_pred             eEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence                7999999999999999999999875

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.70  E-value=2e-16  Score=145.53  Aligned_cols=153  Identities=23%  Similarity=0.278  Sum_probs=110.3

Q ss_pred             EEcCCCCCHHHHHHHHHcCCC-CCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC
Q 005908           17 VVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ   94 (670)
Q Consensus        17 ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~   94 (670)
                      |+|++|+|||||++++.+... .....++. ...............+.+||+||+..+.......++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998876 33322222 2222333333457889999999998887777889999999999999999


Q ss_pred             hhhHHHHHHHH-HHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHH
Q 005908           95 QSTLSRLSSYW-LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (670)
Q Consensus        95 ~~s~~~~~~~~-~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~  172 (670)
                      +.++......+ .........++|+++|+||+|+...... .. ........... ..+++++||+++.|+.++++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-SE-EELAEQLAKEL-GVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-HH-HHHHHHHHhhc-CCcEEEEecCCCCChHHHHHHHh
Confidence            99988887531 2222334558999999999998765433 11 11012222222 24799999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01889 SelB_euk SelB subfamily

Probab=99.70  E-value=2.8e-16  Score=151.72  Aligned_cols=159  Identities=18%  Similarity=0.177  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC----CCCCC---C--CCcccceEEEEEEc----------CCCceEEEEEecCChhh
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP----FSENY---A--PTTGEQYAVNVVDQ----------PGGNKKTLILQEIPEEG  484 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~----~~~~~---~--~t~~~~~~~~~vd~----------~g~~~~~~i~d~~g~~~  484 (670)
                      ++|+++|++|||||||+++|++..    +....   .  .|....+....+..          .+....+.+||++|+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999999731    11111   1  12222222222321          12356788899999865


Q ss_pred             HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHH-HHH
Q 005908          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSAR-VTQ  560 (670)
Q Consensus       485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~-~~~  560 (670)
                      +...  .......+|++++|+|++++.+......+. .....      +.|+++|+||+|+......   .++..+ +..
T Consensus        81 ~~~~--~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~  151 (192)
T cd01889          81 LIRT--IIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQK  151 (192)
T ss_pred             HHHH--HHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence            5332  345567789999999999875544433222 11111      5899999999999753322   122222 111


Q ss_pred             Hh-----CCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          561 EL-----GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       561 ~~-----~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      .+     ...+++++||++| |++++++++...+.-|
T Consensus       152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            11     1235999999999 9999999999987644

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01895 EngA2 EngA2 subfamily

Probab=99.70  E-value=5.5e-16  Score=146.70  Aligned_cols=156  Identities=18%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhH-------h--hhhchH
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------K--KILSNK  492 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-------~--~~~~~~  492 (670)
                      +++|+++|.+|+|||||+|+|++........ +++........+...+  ..+.+||++|....       +  ...+..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999999987544333 2222222223333332  34678999995322       1  111234


Q ss_pred             hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--ccHHHHHHHHHHhC---CCCc
Q 005908          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELG---IEPP  567 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~---~~~~  567 (670)
                      ..+..+|++++|+|++++.+.... .+...+...      +.|+++|+||+|+.+..  ......+.+.+.++   ..++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILEE------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPI  152 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhc------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCce
Confidence            567899999999999998775443 333333332      68999999999998752  22222333444443   3469


Q ss_pred             EEeecccC-ChHHHHHHHHHH
Q 005908          568 IPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       568 ~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      +++||+++ |++++++.+.+.
T Consensus       153 ~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         153 VFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEEeccCCCCHHHHHHHHHHh
Confidence            99999999 999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.70  E-value=2e-16  Score=150.38  Aligned_cols=158  Identities=21%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhH----hhhh-chHhhcccccEE
Q 005908          428 LFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKIL-SNKEALASCDVT  501 (670)
Q Consensus       428 ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~~~-~~~~~~~~ad~v  501 (670)
                      |+|++|||||||+|+|.+.+... .+..++.. .....+..+ ....+.+||++|....    +.+. .....++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLE-PNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeec-CcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999987522 22223322 222234444 2456788999996321    1121 124567889999


Q ss_pred             EEEEECCCc------ccHHHHHHHHHHHHHhcCC----CCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908          502 IFVYDSSDE------YSWKRTKELLVEVARLGED----SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       502 llv~D~s~~------~s~~~~~~~~~~i~~~~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      ++|+|++++      .++.....|...+......    ...+.|+++|+||+|+....................+++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999988      4677777777777654321    001699999999999986433322211112222233599999


Q ss_pred             cccC-ChHHHHHHHHHH
Q 005908          572 MKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~  587 (670)
                      |+++ |++++++.+.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            9999 999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.69  E-value=2.6e-16  Score=174.26  Aligned_cols=156  Identities=19%  Similarity=0.158  Sum_probs=107.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+..+|+++|++|+|||||+++|.+.++.... +++...... ..+.. ++..+.||||||++.|..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~-~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGA-YHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceE-EEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            446689999999999999999999988876543 221111111 11222 233899999999999999998999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHH------HHHhccCCeEEEeCccc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSATT  160 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SA~~  160 (670)
                      ++|+|+++....+...  .+...+..  ++|+++++||+|+....    .++....+      ...++...+++++||++
T Consensus       163 ILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt  234 (587)
T TIGR00487       163 VLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEAN----PDRVKQELSEYGLVPEDWGGDTIFVPVSALT  234 (587)
T ss_pred             EEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCC----HHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence            9999988743322222  22333433  79999999999986532    11111111      12222223699999999


Q ss_pred             CCCchHHHHHHHH
Q 005908          161 MIQVPDVFYYAQK  173 (670)
Q Consensus       161 ~~gi~~l~~~i~~  173 (670)
                      |.||+++++.+..
T Consensus       235 GeGI~eLl~~I~~  247 (587)
T TIGR00487       235 GDGIDELLDMILL  247 (587)
T ss_pred             CCChHHHHHhhhh
Confidence            9999999998764

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.69  E-value=5.1e-16  Score=150.18  Aligned_cols=168  Identities=14%  Similarity=0.128  Sum_probs=118.1

Q ss_pred             ccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------H----hh
Q 005908          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------V----KK  487 (670)
Q Consensus       418 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~----~~  487 (670)
                      ....+.++|+|+|.||||||||.|.++|.....++..+.+++..+.-+-+. +...+.++||+|--.      +    .-
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence            335677999999999999999999999999999988655555665666666 567788899999311      1    11


Q ss_pred             hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-------------HHH
Q 005908          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQD  554 (670)
Q Consensus       488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-------------~~~  554 (670)
                      +.....++..||++++|+|+++.... --...+..+..+.     ++|-++|.||+|....+..             ...
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~-l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~  219 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTP-LHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL  219 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCc-cChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence            22346678899999999999964221 1123344455553     6999999999998763321             111


Q ss_pred             HHHHHHHhCCC----------------CcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          555 SARVTQELGIE----------------PPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       555 ~~~~~~~~~~~----------------~~~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      ..++.+++...                .+|.+||++| |++++-++|+.++....
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            22333333222                3899999999 99999999999885433

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.2e-16  Score=161.17  Aligned_cols=225  Identities=13%  Similarity=0.085  Sum_probs=140.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC-------CCCC---------CCeE--eCCcccCCceeEEEEeCCCCccchhh
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKV-------PPVH---------APTR--LPPDFYPDRVPVTIIDTSSSLENKGK   75 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~-------~~~~---------~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (670)
                      +|+|+|++|+|||||+++|+...-....       ..+.         +.+.  ....+.+.+.++.+|||||+.++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            5899999999999999999742211000       0000         0000  11233456889999999999888888


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeE
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (670)
                      +..+++.+|++|+|+|+.+...-..  ..++..++..  ++|+++++||+|+.+..    .......+...++.  +...
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~a~----~~~~~~~l~~~l~~~~~~~~  152 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTGAD----FFRVVEQIREKLGANPVPLQ  152 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceEEE
Confidence            8899999999999999887543332  2356666665  78999999999987532    23344555555543  2346


Q ss_pred             EEeCcccC-CCchHHHHHHHHHHcCC-C--CCC-----CccccccccHHHHHHH-HHHHHHhCCCCCCC-----CChHHH
Q 005908          154 VECSATTM-IQVPDVFYYAQKAVLHP-T--APL-----FDHDEQTLKPRCVRAL-KRIFIICDHDMDGA-----LNDAEL  218 (670)
Q Consensus       154 ~~~SA~~~-~gi~~l~~~i~~~~~~~-~--~~~-----~~~~~~~~~~~~~~~l-~ri~~~~d~~~~~~-----l~~~el  218 (670)
                      +++|+..+ .|+-+++.   ..++.. .  ...     .+........+++..| +.+....|..++.|     ++.+++
T Consensus       153 ~Pisa~~~f~g~vd~~~---~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el  229 (270)
T cd01886         153 LPIGEEDDFRGVVDLIE---MKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEI  229 (270)
T ss_pred             eccccCCCceEEEEccc---cEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence            88998844 45555443   222211 1  000     0011112223444444 55555555544444     444554


Q ss_pred             HHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908          219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (670)
Q Consensus       219 ~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~  249 (670)
                      ...-+.          +|++++...++..+++.+.+++|+|
T Consensus       230 ~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p  270 (270)
T cd01886         230 KAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP  270 (270)
T ss_pred             HHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence            433332          7899999999999999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.69  E-value=5e-16  Score=148.14  Aligned_cols=147  Identities=17%  Similarity=0.159  Sum_probs=96.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh----------hhHhhhh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL  489 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~----------~~~~~~~  489 (670)
                      .+..++|+|+|.+|||||||+|++++..+.....++.+.......+..++   .+.+||++|.          +.+..+ 
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~-   90 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL-   90 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH-
Confidence            35678999999999999999999999864333333333333334444442   5778999993          223322 


Q ss_pred             chHhhcc---cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC
Q 005908          490 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG  563 (670)
Q Consensus       490 ~~~~~~~---~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~  563 (670)
                       ...+++   .+|++++|+|++++.+.... .++..+...      +.|+++|+||+|+......   .+++++..+..+
T Consensus        91 -~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~  162 (179)
T TIGR03598        91 -IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA  162 (179)
T ss_pred             -HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence             223443   46899999999987664443 333334332      6899999999999764322   333444444443


Q ss_pred             C-CCcEEeecccC-ChH
Q 005908          564 I-EPPIPVSMKSK-DLN  578 (670)
Q Consensus       564 ~-~~~~~vSA~~g-~v~  578 (670)
                      . .+++++||++| |++
T Consensus       163 ~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       163 DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCCceEEEECCCCCCCC
Confidence            2 26999999999 873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.68  E-value=2.7e-16  Score=151.16  Aligned_cols=157  Identities=22%  Similarity=0.253  Sum_probs=111.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------------CCCCCCeEeCCccc--CCceeEEEEeCCCC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-------------------PPVHAPTRLPPDFY--PDRVPVTIIDTSSS   69 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~   69 (670)
                      +..+|+++|+.++|||||+++|+........                   .+..... ....+.  .....+.++||||+
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~-~~~~~~~~~~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL-SFISFEKNENNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS-EEEEEEBTESSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc-ccccccccccccceeecccccc
Confidence            5678999999999999999999855421110                   0100000 111222  56789999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH----H
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM----Q  145 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~----~  145 (670)
                      .+|...+...++.+|++|+|+|+.+.......  ..+..++..  ++|+++|+||+|+...    ...+..+++.    +
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLK  152 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHH----HHHHHHHHHHHHHHH
T ss_pred             cceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhh----hHHHHHHHHHHHhcc
Confidence            99988888999999999999999876544432  366667766  8999999999999832    2333333333    3


Q ss_pred             Hhcc----CCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          146 QFRE----IETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       146 ~~~~----~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ..+.    ..+++++||++|.|+++|++.+.+.+.
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            3322    347999999999999999999887653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04169 RF3 RF3 subfamily

Probab=99.68  E-value=1.5e-16  Score=160.43  Aligned_cols=223  Identities=13%  Similarity=0.052  Sum_probs=128.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC----------CC------------eEeCCcccCCceeEEEEeCCCCc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----------AP------------TRLPPDFYPDRVPVTIIDTSSSL   70 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~----------~~------------~~~~~~~~~~~~~~~i~Dt~G~~   70 (670)
                      -+|+|+|++|+|||||+++|+...-.....+..          ..            ......+.+.++++++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            369999999999999999998543111111100          00            00112455678999999999999


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (670)
                      +|......+++.+|++|+|+|+++......  ..++......  ++|+++++||+|+....    ..+.+..+...++..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~~~  154 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGRD----PLELLDEIEEELGID  154 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCCC----HHHHHHHHHHHHCCC
Confidence            888778888999999999999987543222  2355555554  79999999999986542    223345555666532


Q ss_pred             CeEEEeCcccCCCchHHHHHHHHHHcCC-CC--C-CC-----ccccccccHHHH-HHHHHHHHHhCCCCCCCCChHHHHH
Q 005908          151 ETCVECSATTMIQVPDVFYYAQKAVLHP-TA--P-LF-----DHDEQTLKPRCV-RALKRIFIICDHDMDGALNDAELNE  220 (670)
Q Consensus       151 ~~~~~~SA~~~~gi~~l~~~i~~~~~~~-~~--~-~~-----~~~~~~~~~~~~-~~l~ri~~~~d~~~~~~l~~~el~~  220 (670)
                      .-.+......+.++..+.+.+...+... ..  . ..     .....+...+.. ..+++.+...+      ...+++..
T Consensus       155 ~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~------~~~~~~~~  228 (267)
T cd04169         155 CTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELE------LLEGAGPE  228 (267)
T ss_pred             ceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCc------cchhhhHH
Confidence            2223333334444444444443333211 10  0 00     001011111111 11133222211      12222111


Q ss_pred             H-----hhh-----hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908          221 F-----QVK-----CFNAPLQPAEIVGVKRVVQEKQHDG  249 (670)
Q Consensus       221 ~-----q~~-----~~~~~l~~~~~~~l~~~l~~~~~~~  249 (670)
                      .     +..     +|++++...++..|++.+.+++|+|
T Consensus       229 ~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p  267 (267)
T cd04169         229 FDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP  267 (267)
T ss_pred             HhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence            1     111     7999999999999999999999975

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.68  E-value=9.3e-16  Score=141.10  Aligned_cols=153  Identities=24%  Similarity=0.359  Sum_probs=112.2

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEE
Q 005908          428 LFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD  506 (670)
Q Consensus       428 ivG~~~vGKSSLin~l~~~~~-~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D  506 (670)
                      |+|++|+|||||+|++.+... .....+|. ..........++....+.+||++|...+...  ....++.+|++++|+|
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v~d   77 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSL--RRLYYRGADGIILVYD   77 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhH--HHHHhcCCCEEEEEEE
Confidence            589999999999999999877 33433444 5555555555545677889999998777665  5778899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH-HHHHHHhCCCCcEEeecccC-ChHHHHHHH
Q 005908          507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSK-DLNNVFSRI  584 (670)
Q Consensus       507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l  584 (670)
                      ++++.++.....|...........  +.|+++|+||+|+.......... ..........+++++||+++ |+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882          78 VTDRESFENVKEWLLLILINKEGE--NIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             CcCHHHHHHHHHHHHHHHHhhccC--CCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence            999988888777632222222222  79999999999998754433221 22333334456999999999 999999987


Q ss_pred             H
Q 005908          585 I  585 (670)
Q Consensus       585 ~  585 (670)
                      .
T Consensus       156 ~  156 (157)
T cd00882         156 A  156 (157)
T ss_pred             h
Confidence            5

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=3.4e-16  Score=133.31  Aligned_cols=162  Identities=8%  Similarity=0.076  Sum_probs=126.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .++++|+.+|-.++||||++..|..+......|++.....   .+...+++|++||.+|++..+.+|..|+.+..++|||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            4589999999999999999999998887776666443332   3456789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      +|..+++..++.+++++..+... -.+.|+++.+||.|+..........+ ..++..--+..-.+.++||.+|.|+.|-|
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d-~leLe~~r~~~W~vqp~~a~~gdgL~egl  170 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQD-KLELERIRDRNWYVQPSCALSGDGLKEGL  170 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHH-HhccccccCCccEeeccccccchhHHHHH
Confidence            99999999999988888888543 24789999999999998755411111 11111111111247889999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      .++...+
T Consensus       171 swlsnn~  177 (180)
T KOG0071|consen  171 SWLSNNL  177 (180)
T ss_pred             HHHHhhc
Confidence            9887654

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.68  E-value=1.8e-15  Score=130.83  Aligned_cols=170  Identities=18%  Similarity=0.185  Sum_probs=131.1

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCCCCCeEeCCcccC-CceeEEEEeCCCCccc-hhhhHHHh
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLEN-KGKLNEEL   80 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~-~~~~~~~~   80 (670)
                      +..+.+..||+++|.-+||||+++.+++.++....   .|++.+.+...++.+. -.-.+.++||.|...+ ..+-..++
T Consensus         3 ~~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~   82 (198)
T KOG3883|consen    3 NAKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYF   82 (198)
T ss_pred             chhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHh
Confidence            34556789999999999999999999998775444   3444444433333222 2456899999998877 44555788


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      .-+|++++|||..+++||+.+.. +.++|.+..  ..+||++.+||+|+.+++.+  ..+....+++.-.  ...++++|
T Consensus        83 q~aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v--d~d~A~~Wa~rEk--vkl~eVta  157 (198)
T KOG3883|consen   83 QFADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREV--DMDVAQIWAKREK--VKLWEVTA  157 (198)
T ss_pred             ccCceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhc--CHHHHHHHHhhhh--eeEEEEEe
Confidence            89999999999999999999873 777776643  36899999999999988777  3455566766654  36999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~  180 (670)
                      ++...+-+.|..+...+.++..
T Consensus       158 ~dR~sL~epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  158 MDRPSLYEPFTYLASRLHQPQS  179 (198)
T ss_pred             ccchhhhhHHHHHHHhccCCcc
Confidence            9999999999999998876653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.68  E-value=3.8e-16  Score=174.96  Aligned_cols=158  Identities=14%  Similarity=0.179  Sum_probs=111.6

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CCC---CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVH---APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      ..+..+|+|+|++|+|||||+++|.+..+..... ++.   ..+.........+..+.||||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            4566899999999999999999999887654422 211   111122222235689999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHH------HHHhccCCeEEEeCc
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSA  158 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SA  158 (670)
                      ++|+|+|+++........  .+..+...  ++|+|+|+||+|+....    .......+      ...++...+++++||
T Consensus       321 iaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~----~e~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        321 IAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANAN----TERIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccC----HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence            999999998753333222  22334433  79999999999997532    11111221      223333357999999


Q ss_pred             ccCCCchHHHHHHHHH
Q 005908          159 TTMIQVPDVFYYAQKA  174 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~  174 (670)
                      ++|.||+++++.+...
T Consensus       393 ktG~GIdeLle~I~~l  408 (742)
T CHL00189        393 SQGTNIDKLLETILLL  408 (742)
T ss_pred             CCCCCHHHHHHhhhhh
Confidence            9999999999988764

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.68  E-value=3.5e-16  Score=138.50  Aligned_cols=114  Identities=22%  Similarity=0.322  Sum_probs=85.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      ||+|+|++|||||||+++|++..+.  ....++....+........+....+.+||..|++.+...  ....+..+|+++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~d~~i   78 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ--HQFFLKKADAVI   78 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT--SHHHHHHSCEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc--ccchhhcCcEEE
Confidence            7999999999999999999998877  122244455566556666655556788999999877765  455689999999


Q ss_pred             EEEECCCcccHHHHHHH---HHHHHHhcCCCCCCCcEEEEEeCCC
Q 005908          503 FVYDSSDEYSWKRTKEL---LVEVARLGEDSGYGVPCLLIASKDD  544 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~---~~~i~~~~~~~~~~~piilv~NK~D  544 (670)
                      +|||++++.|++.+..+   +..+.....    +.|+++|+||.|
T Consensus        79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~~----~~piilv~nK~D  119 (119)
T PF08477_consen   79 LVYDLSDPESLEYLSQLLKWLKNIRKRDK----NIPIILVGNKSD  119 (119)
T ss_dssp             EEEECCGHHHHHHHHHHHHHHHHHHHHSS----CSEEEEEEE-TC
T ss_pred             EEEcCCChHHHHHHHHHHHHHHHHHccCC----CCCEEEEEeccC
Confidence            99999999999987655   444444322    699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.68  E-value=5.2e-16  Score=175.55  Aligned_cols=161  Identities=19%  Similarity=0.151  Sum_probs=110.7

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+...|+|+|+.++|||||+++|.+..+.....+......-...+...+..++||||||++.|..++...++.+|++|
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            35677899999999999999999999877655422211111111123344678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh---hHHHHHhccCCeEEEeCcccCCCc
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|||+++...-+...  .+..++..  ++|+|+++||+|+...... .....+   ..+...++...+++++||++|.||
T Consensus       366 LVVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~~e-~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        366 LVVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGANPD-RVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EEEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccCHH-HHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            999998743222221  22333434  7999999999999653211 011111   112233333347999999999999


Q ss_pred             hHHHHHHHH
Q 005908          165 PDVFYYAQK  173 (670)
Q Consensus       165 ~~l~~~i~~  173 (670)
                      +++++.+..
T Consensus       441 ~eLle~I~~  449 (787)
T PRK05306        441 DELLEAILL  449 (787)
T ss_pred             hHHHHhhhh
Confidence            999998764

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.68  E-value=9.2e-17  Score=139.05  Aligned_cols=169  Identities=19%  Similarity=0.244  Sum_probs=132.4

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      .++.-.+||.++|++.+|||||+-.++++.+.+....+.+...  ....+.+..+.+.|||.+|++++..+.+.+..++-
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence            3455579999999999999999999999988765443333333  33445566788999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc---cchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +++|+||++.+.++..+.+ |++..+..+...--|+||+|-|+.-.-..   .........+++-++.  +.+.||+.++
T Consensus        95 aIlFmFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~s  171 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHS  171 (205)
T ss_pred             EEEEEEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeecccc
Confidence            9999999999999999995 99999987655445789999996533222   0222334555666653  7999999999


Q ss_pred             CCchHHHHHHHHHHcCC
Q 005908          162 IQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~  178 (670)
                      .||+.+|..+..+++.-
T Consensus       172 INv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNL  188 (205)
T ss_pred             ccHHHHHHHHHHHHhCC
Confidence            99999999888887644

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.68  E-value=1e-15  Score=142.32  Aligned_cols=147  Identities=22%  Similarity=0.289  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHhhcc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALA  496 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~~  496 (670)
                      ++|+++|++|+|||||+|++.+........ ++++.......+...  ...+.+||++|...+..      ..+....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999887543322 333333333344443  35677899999533221      112446678


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      .+|++++|+|++++.+......+..    .   .  +.|+++|+||+|+......      .. .....+++++||+++ 
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~----~---~--~~~vi~v~nK~D~~~~~~~------~~-~~~~~~~~~~Sa~~~~  143 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL----P---A--DKPIIVVLNKSDLLPDSEL------LS-LLAGKPIIAISAKTGE  143 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh----h---c--CCCEEEEEEchhcCCcccc------cc-ccCCCceEEEECCCCC
Confidence            9999999999998877665544333    1   1  6999999999999874322      12 222346999999999 


Q ss_pred             ChHHHHHHHHHHH
Q 005908          576 DLNNVFSRIIWAA  588 (670)
Q Consensus       576 ~v~~l~~~l~~~~  588 (670)
                      |+++++++|.+.+
T Consensus       144 ~v~~l~~~l~~~~  156 (157)
T cd04164         144 GLDELKEALLELA  156 (157)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.68  E-value=7.3e-16  Score=149.64  Aligned_cols=117  Identities=19%  Similarity=0.285  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccC-CEEEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA-DAVVLTYA   91 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~ii~v~d   91 (670)
                      +|+++|++|||||||+++|..+.+....+++..... ........+..+.+|||||+.++...+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999887666554322221 1111113467899999999999988888999999 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHHh---cCCCCCEEEEEeCCCCCCC
Q 005908           92 CNQQ-STLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        92 ~~~~-~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~Dl~~~  130 (670)
                      +++. .++....++|+..+..   ..+++|+++|+||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9987 6777777656555533   2358999999999998764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.68  E-value=2.1e-15  Score=146.15  Aligned_cols=158  Identities=19%  Similarity=0.189  Sum_probs=103.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh----------hhHhhhh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL  489 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~----------~~~~~~~  489 (670)
                      .+..++|+++|.+|||||||+|+|++.++.....++.+....+.....   ...+.+||++|.          +.+..+ 
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~-   96 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL-   96 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH-
Confidence            446689999999999999999999998654444444443333333333   246778999993          333333 


Q ss_pred             chHhhcc---cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--C
Q 005908          490 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--I  564 (670)
Q Consensus       490 ~~~~~~~---~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~  564 (670)
                       ...+++   .++++++|+|++++.+... ..+...+...      +.|+++++||+|+..........+.+.+.++  .
T Consensus        97 -~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~  168 (196)
T PRK00454         97 -IEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD  168 (196)
T ss_pred             -HHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence             233443   4578999999888655332 1222223222      6899999999999764332222222323222  2


Q ss_pred             CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          565 EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       565 ~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      .+++++||++| |++++++.|.+.+.
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            35999999999 99999999987764

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.68  E-value=4.9e-16  Score=166.64  Aligned_cols=159  Identities=19%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch----h---hhHHHhccC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK----G---KLNEELKRA   83 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~a   83 (670)
                      -..|+|||.||||||||+|+|++.+.. .++|.++... ....+...+..+.+|||||+.+..    .   ..-.+++.+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P-~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVP-NLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccc-eEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            457999999999999999999987632 2244322111 122344456789999999974321    1   122456789


Q ss_pred             CEEEEEEECCCh----hhHHHHHHHHHHHHHhcC------------CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh
Q 005908           84 DAVVLTYACNQQ----STLSRLSSYWLPELRRLE------------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (670)
Q Consensus        84 d~ii~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  147 (670)
                      |++|+|+|+++.    +.++++. .|..++..+.            .++|+|+|+||+|+.+....   .+.........
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el---~e~l~~~l~~~  313 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL---AEFVRPELEAR  313 (500)
T ss_pred             CEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH---HHHHHHHHHHc
Confidence            999999999753    3444443 2444454332            26899999999999753321   11222222233


Q ss_pred             ccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          148 REIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       148 ~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      +  .+++++||+++.|++++++++.+.+..
T Consensus       314 g--~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        314 G--WPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             C--CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3  369999999999999999999887643

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.5e-16  Score=143.08  Aligned_cols=160  Identities=17%  Similarity=0.303  Sum_probs=139.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..++++++|+.|.|||+++++...++|...+.+|++....-.+.+++-+..++..||++|++.+..+  ...++-.+.+.
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl--rdgyyI~~qcA   86 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL--RDGYYIQGQCA   86 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--ccccEEeccee
Confidence            4689999999999999999999999999999999998888788888866788999999999988887  77788899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +++||++.+.+..++.+|.+.+.+.+.    ++||+++|||.|...++ .....-.+-+..++. ++++||+++ |.+.-
T Consensus        87 iimFdVtsr~t~~n~~rwhrd~~rv~~----NiPiv~cGNKvDi~~r~-~k~k~v~~~rkknl~-y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   87 IIMFDVTSRFTYKNVPRWHRDLVRVRE----NIPIVLCGNKVDIKARK-VKAKPVSFHRKKNLQ-YYEISAKSNYNFERP  160 (216)
T ss_pred             EEEeeeeehhhhhcchHHHHHHHHHhc----CCCeeeeccceeccccc-cccccceeeecccce-eEEeecccccccccc
Confidence            999999999999999999999998886    79999999999987744 233333455556665 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |.++.+.+.
T Consensus       161 Fl~LarKl~  169 (216)
T KOG0096|consen  161 FLWLARKLT  169 (216)
T ss_pred             hHHHhhhhc
Confidence            999999873

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.7e-16  Score=142.81  Aligned_cols=162  Identities=17%  Similarity=0.297  Sum_probs=131.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCccc-CC-ceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-PD-RVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+|++++|+.|.||||++++.+.++|...++.+.+....+..+. +. .+++..|||.|++.+.....-++-++.+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            5689999999999999999999999999998777666665443333 33 499999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ++||++.+.++.++.. |...+.+.+.++||+++|||.|..... +  ....+...   .+..+.++++||+++.|.+.-
T Consensus        88 imFdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~-~--k~k~v~~~---rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARK-V--KAKPVSFH---RKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EEeeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccc-c--ccccceee---ecccceeEEeecccccccccc
Confidence            9999999999999984 999998888899999999999976532 1  01111111   112246999999999999999


Q ss_pred             HHHHHHHHcCC
Q 005908          168 FYYAQKAVLHP  178 (670)
Q Consensus       168 ~~~i~~~~~~~  178 (670)
                      |-++.+.+.-.
T Consensus       161 Fl~LarKl~G~  171 (216)
T KOG0096|consen  161 FLWLARKLTGD  171 (216)
T ss_pred             hHHHhhhhcCC
Confidence            99999988543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.67  E-value=1.1e-15  Score=170.38  Aligned_cols=159  Identities=19%  Similarity=0.179  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCC------CCCeE----eCCcc---cCCceeEEEEeCCCCccc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES-------VPEKVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLEN   72 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~-------~~~~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~   72 (670)
                      -+|+|+|+.++|||||+++|+...       +...+..+      .+.+.    ....+   +...+.++||||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            379999999999999999998753       11111110      01111    11112   234588999999999999


Q ss_pred             hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-C
Q 005908           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-E  151 (670)
Q Consensus        73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~  151 (670)
                      ...+..+++.+|++|+|+|+++..+.+.... |...+. .  ++|+++|+||+|+....    ..+....+.+.++.. .
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-~--~ipiIiViNKiDl~~~~----~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-N--DLEIIPVINKIDLPSAD----PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-c--CCCEEEEEECcCCCccC----HHHHHHHHHHHhCCCcc
Confidence            9999999999999999999998777766553 544443 2  78999999999986432    223334454544421 2


Q ss_pred             eEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          152 TCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      .++++||++|.||+++|+.+.+.+..+.
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            4899999999999999999998876553

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.67  E-value=6.5e-16  Score=150.26  Aligned_cols=164  Identities=18%  Similarity=0.149  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCC-CCCCC-CCeEeCCcc-------------------------c------C
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV---PEK-VPPVH-APTRLPPDF-------------------------Y------P   56 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~---~~~-~~~~~-~~~~~~~~~-------------------------~------~   56 (670)
                      ++|+++|+.|+|||||+..+.+...   ... ..+.. .........                         .      .
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999976421   111 00000 000000000                         0      0


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~  136 (670)
                      ....+.||||||++++...+...+..+|++++|+|++++.......+ .+..+... ...|+++|+||+|+.........
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIM-GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHc-CCCcEEEEEEchhccCHHHHHHH
Confidence            12679999999998887777788889999999999987311111111 22223333 13579999999999753211011


Q ss_pred             hhhhhHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          137 EEVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       137 ~~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      .+.+..+...+ ....+++++||++|.||+++++.+.+.+..+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            12222222221 1123699999999999999999998876543

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.67  E-value=1.3e-15  Score=166.22  Aligned_cols=152  Identities=20%  Similarity=0.256  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhh----Hhh-h-hchHhhcc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK-I-LSNKEALA  496 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~-~-~~~~~~~~  496 (670)
                      ++|+|+|++|||||||+|+|.+.....+.. +.++.+.....+.+.|  ..+.+|||+|.+.    +.. + .....++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999987644333 3333334444555553  6788899999765    111 1 11456789


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      .+|++|+|+|++++.+.... .....+...      ++|+++|+||+|+.+.   .....++ ..+++..++++||++| 
T Consensus        80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~~------~~piilv~NK~D~~~~---~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE-EIAKILRKS------NKPVILVVNKVDGPDE---EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHHHHHc------CCcEEEEEECccCccc---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            99999999999987553321 222223332      6999999999997652   2222333 3566666899999999 


Q ss_pred             ChHHHHHHHHHHH
Q 005908          576 DLNNVFSRIIWAA  588 (670)
Q Consensus       576 ~v~~l~~~l~~~~  588 (670)
                      |++++++.+.+..
T Consensus       149 gv~~l~~~I~~~~  161 (435)
T PRK00093        149 GIGDLLDAILEEL  161 (435)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998843

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.67  E-value=1.7e-15  Score=167.76  Aligned_cols=156  Identities=16%  Similarity=0.206  Sum_probs=112.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ...+++|+++|.+|+|||||+++|.+..+.....++++.......+.+++ ...+.+||++|++.|..+  +...+..+|
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~--r~rga~~aD  160 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSM--RARGAKVTD  160 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhH--HHhhhccCC
Confidence            45668999999999999999999999887765555444444445566553 337788999999999887  667889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC--------CCcEEee
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVS  571 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS  571 (670)
                      ++++|+|++++..-+.. ..+......      ++|+++++||+|+....  .+........+++        .+++++|
T Consensus       161 iaILVVda~dgv~~qT~-e~i~~~~~~------~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~iS  231 (587)
T TIGR00487       161 IVVLVVAADDGVMPQTI-EAISHAKAA------NVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPVS  231 (587)
T ss_pred             EEEEEEECCCCCCHhHH-HHHHHHHHc------CCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence            99999999986432222 222332222      69999999999996522  2223333333321        2589999


Q ss_pred             cccC-ChHHHHHHHHHH
Q 005908          572 MKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~  587 (670)
                      |++| |++++++.+...
T Consensus       232 AktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       232 ALTGDGIDELLDMILLQ  248 (587)
T ss_pred             CCCCCChHHHHHhhhhh
Confidence            9999 999999998754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.67  E-value=2.2e-15  Score=167.83  Aligned_cols=159  Identities=14%  Similarity=0.202  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-------CCCCC------cccceEEEEE--Ec---CCCceEEEEEecCChhhH
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSE-------NYAPT------TGEQYAVNVV--DQ---PGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~-------~~~~t------~~~~~~~~~v--d~---~g~~~~~~i~d~~g~~~~  485 (670)
                      -+|+|+|.+++|||||+++|+......       .+..+      .+..+....+  .+   +|....+.+|||+|+..|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999998753211       11111      1222322222  22   344568889999999998


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE  565 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  565 (670)
                      ...  ...+++.+|++|+|+|++++.+.+....|...+. .      ++|+++|+||+|+.... ..+..+++.+.+++.
T Consensus        84 ~~~--v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~------~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~~  153 (595)
T TIGR01393        84 SYE--VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N------DLEIIPVINKIDLPSAD-PERVKKEIEEVIGLD  153 (595)
T ss_pred             HHH--HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c------CCCEEEEEECcCCCccC-HHHHHHHHHHHhCCC
Confidence            876  6788999999999999999888777766655442 1      68999999999987532 233445666667764


Q ss_pred             --CcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          566 --PPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       566 --~~~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                        +++++||++| |++++|+.|.+.+..|.
T Consensus       154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       154 ASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             cceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence              4899999999 99999999999887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.66  E-value=6.6e-16  Score=177.10  Aligned_cols=159  Identities=17%  Similarity=0.122  Sum_probs=111.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhh-hH
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGK-LN   77 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~   77 (670)
                      ..+||+|+|++|||||||+|+|++.++  +...+++.... ....+..++..+.+|||||+.+          +... ..
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~-~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDP-VDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCc-ceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            458999999999999999999999874  44455433222 2223334566788999999642          1111 12


Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEE
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVE  155 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  155 (670)
                      .+++.+|++++|+|+++..+..+..  +...+...  ++|+++|+||+|+.+....   ......+...+.  ...++++
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~---~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRR---QRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHH---HHHHHHHHHhccCCCCCCEEE
Confidence            4578999999999999988888764  55666554  7999999999999753221   111112222221  1236799


Q ss_pred             eCcccCCCchHHHHHHHHHHcC
Q 005908          156 CSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      +||++|.||+++++.+.+.+..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.66  E-value=1.6e-15  Score=172.71  Aligned_cols=153  Identities=15%  Similarity=0.157  Sum_probs=113.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh----------hHHH
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----------LNEE   79 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~   79 (670)
                      +.++|+++|+||||||||+|+|++.+. ..+.+++.. ..+...+..++.++.+|||||+.++...          ...+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv-e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV-ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE-eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            468999999999999999999998763 333555322 2234456677889999999998765321          1223


Q ss_pred             h--ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           80 L--KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        80 ~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      +  ..+|++++|+|.++.+...    +|...+.+.  ++|+++|+||+|+.+.+..   ....+.+.+.++  .+++++|
T Consensus        81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~i---~id~~~L~~~LG--~pVvpiS  149 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIDIDALSARLG--CPVIPLV  149 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccCc---HHHHHHHHHHhC--CCEEEEE
Confidence            2  4799999999998765422    355666665  7999999999998755443   234566777777  3799999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 005908          158 ATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~  175 (670)
                      |++|+|++++.+.+.+..
T Consensus       150 A~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        150 STRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             eecCCCHHHHHHHHHHhh
Confidence            999999999999888765

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.66  E-value=7.7e-16  Score=171.46  Aligned_cols=156  Identities=18%  Similarity=0.129  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      +.|+++|++|+|||||+++|++..   +... .+++.... ....+...+..+.+|||||++.|...+...+.++|++++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~-~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL   79 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDL-GFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALL   79 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEe-EEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence            469999999999999999999743   2222 12211111 111233445889999999999988888888999999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEEEeCcccCC
Q 005908           89 TYACNQQ---STLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATTMI  162 (670)
Q Consensus        89 v~d~~~~---~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~SA~~~~  162 (670)
                      |+|+++.   ++.+.+     ..++..  ++| +++|+||+|+.+........+.+..+.+.++.  ..+++++||++|.
T Consensus        80 VVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475        80 VVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             EEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            9999883   444433     334444  677 99999999997643221123344555554431  2479999999999


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++++.+...+.
T Consensus       153 GI~eL~~~L~~l~~  166 (581)
T TIGR00475       153 GIGELKKELKNLLE  166 (581)
T ss_pred             CchhHHHHHHHHHH
Confidence            99999998876553

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.65  E-value=5.6e-15  Score=150.19  Aligned_cols=174  Identities=22%  Similarity=0.235  Sum_probs=119.4

Q ss_pred             hhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC------
Q 005908          408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP------  481 (670)
Q Consensus       408 ~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g------  481 (670)
                      +..+...+.+......+.|+++|.+|+|||||+|+|++...........+-+-..+.+.+++ ....++-||.|      
T Consensus       177 ~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP  255 (411)
T COG2262         177 EKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLP  255 (411)
T ss_pred             HHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCC
Confidence            33333344444456779999999999999999999998765533332222222234456663 45566678877      


Q ss_pred             hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH
Q 005908          482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE  561 (670)
Q Consensus       482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  561 (670)
                      +....++..+......||++++|+|++++...+.+.....-+.+....   .+|+|+|.||+|+.....   ....+...
T Consensus       256 ~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~---~~p~i~v~NKiD~~~~~~---~~~~~~~~  329 (411)
T COG2262         256 HPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD---EIPIILVLNKIDLLEDEE---ILAELERG  329 (411)
T ss_pred             hHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC---CCCEEEEEecccccCchh---hhhhhhhc
Confidence            445555555788889999999999999996655555555545444332   599999999999886433   11222222


Q ss_pred             hCCCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          562 LGIEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       562 ~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      .  ++.+.+||++| |++.|.+.|.+.+..
T Consensus       330 ~--~~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         330 S--PNPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             C--CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            2  24899999999 999999999998864

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.65  E-value=6e-15  Score=127.63  Aligned_cols=167  Identities=18%  Similarity=0.275  Sum_probs=136.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCc-eEEEEEecCChhhH-hhhhchHhhccc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGV-KKILSNKEALAS  497 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~-~~~~i~d~~g~~~~-~~~~~~~~~~~~  497 (670)
                      +..||+++|..+||||+++..++-++......  ||+.+ +++-.++++.+. ..+.+.||+|-... ..+  -..++.-
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eL--prhy~q~   84 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQEL--PRHYFQF   84 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhh--hHhHhcc
Confidence            45899999999999999999999777665444  56655 666777777543 46778999996554 334  6778899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +|++++||+..+++||+.+..+-++|.+.....  .+||++++||+|+.+.... ...++.|++.-... .++++|... 
T Consensus        85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKK--EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR~  161 (198)
T KOG3883|consen   85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKK--EVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDRP  161 (198)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhhccccc--cccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccch
Confidence            999999999999999999988888888765544  7999999999999765433 77788888888877 899999999 


Q ss_pred             ChHHHHHHHHHHHhCCCCC
Q 005908          576 DLNNVFSRIIWAAEHPHLN  594 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~~~~~  594 (670)
                      .+-+.|.++...+..|...
T Consensus       162 sL~epf~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  162 SLYEPFTYLASRLHQPQSK  180 (198)
T ss_pred             hhhhHHHHHHHhccCCccc
Confidence            9999999999988766544

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.65  E-value=7.9e-16  Score=132.20  Aligned_cols=157  Identities=19%  Similarity=0.293  Sum_probs=126.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+.+.++|-.++|||||+|....+.+...-.||.+-+  ...+  ..|...+.+||.+|+..++++  +..+++.+++
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~--tkgnvtiklwD~gGq~rfrsm--WerycR~v~a   91 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKV--TKGNVTIKLWDLGGQPRFRSM--WERYCRGVSA   91 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEe--ccCceEEEEEecCCCccHHHH--HHHHhhcCcE
Confidence            456899999999999999999999888877666676643  3333  226778888999999999999  9999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~  573 (670)
                      +++|+|+++++.....+..++.+.....-.  ++|+++.|||.|+...    -....+..++++.       ..|.+|++
T Consensus        92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~--gip~LVLGnK~d~~~A----L~~~~li~rmgL~sitdREvcC~siSck  165 (186)
T KOG0075|consen   92 IVYVVDAADPDKLEASRSELHDLLDKPSLT--GIPLLVLGNKIDLPGA----LSKIALIERMGLSSITDREVCCFSISCK  165 (186)
T ss_pred             EEEEeecCCcccchhhHHHHHHHhcchhhc--CCcEEEecccccCccc----ccHHHHHHHhCccccccceEEEEEEEEc
Confidence            999999999988888787777776555444  7999999999999872    2234455566653       36899999


Q ss_pred             cC-ChHHHHHHHHHHHh
Q 005908          574 SK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~  589 (670)
                      .. |++-+.+++++.-.
T Consensus       166 e~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  166 EKVNIDITLDWLIEHSK  182 (186)
T ss_pred             CCccHHHHHHHHHHHhh
Confidence            99 99999999988653

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.65  E-value=1.8e-15  Score=145.51  Aligned_cols=158  Identities=20%  Similarity=0.295  Sum_probs=110.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------C-----CCcccceEEEEEEcCCCceEEEEEecCChh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------A-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-------------~-----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~  483 (670)
                      ..++|+++|..++|||||+++|++.......             .     ...+.......+........+.++|++|+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4579999999999999999999965432211             0     011112222223212366788899999998


Q ss_pred             hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHH----HHH
Q 005908          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----RVT  559 (670)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~----~~~  559 (670)
                      .+...  ....+..+|++|+|+|+.++.. ......+..+...      ++|+++|+||+|+... ...+..+    .+.
T Consensus        82 ~f~~~--~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~  151 (188)
T PF00009_consen   82 DFIKE--MIRGLRQADIAILVVDANDGIQ-PQTEEHLKILREL------GIPIIVVLNKMDLIEK-ELEEIIEEIKEKLL  151 (188)
T ss_dssp             HHHHH--HHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHHT------T-SEEEEEETCTSSHH-HHHHHHHHHHHHHH
T ss_pred             ceeec--ccceecccccceeeeecccccc-ccccccccccccc------ccceEEeeeeccchhh-hHHHHHHHHHHHhc
Confidence            87765  6777899999999999998855 3345555555555      7999999999999842 2222222    444


Q ss_pred             HHhCC-----CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          560 QELGI-----EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       560 ~~~~~-----~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      +..+.     .|++++||++| |+++|++.|.+.++
T Consensus       152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            44443     35999999999 99999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.64  E-value=1.6e-15  Score=134.61  Aligned_cols=139  Identities=18%  Similarity=0.283  Sum_probs=103.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||++||+.|+|||||+++|.+.+.  .+..|....+.-..+|+||...     +.  ...+.++   .....+||+|++|
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~IDTPGEyi-----E~--~~~y~aL---i~ta~dad~V~ll   70 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNTIDTPGEYI-----EN--PRFYHAL---IVTAQDADVVLLL   70 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccEEECChhhe-----eC--HHHHHHH---HHHHhhCCEEEEE
Confidence            799999999999999999999765  3345666666667788886322     11  1122232   4455799999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHH
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR  583 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~  583 (670)
                      .|++++.+.- -..+.    ...     ++|+|-|+||+|+.......+.++++.+..|+..+|++|+.+| |+++|.++
T Consensus        71 ~dat~~~~~~-pP~fa----~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   71 QDATEPRSVF-PPGFA----SMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             ecCCCCCccC-Cchhh----ccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999874411 01111    111     6899999999999955556777888888999998999999999 99999998


Q ss_pred             HH
Q 005908          584 II  585 (670)
Q Consensus       584 l~  585 (670)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.64  E-value=2.6e-15  Score=165.89  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=104.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC----CCeEeCCccc--------------CCceeEEEEeCCCCccc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----APTRLPPDFY--------------PDRVPVTIIDTSSSLEN   72 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~   72 (670)
                      +..-|+++|++|+|||||+|+|.+..+....++..    +.+.......              .....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            34569999999999999999999988765543311    1111111110              01123889999999999


Q ss_pred             hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc---cch-----------hh
Q 005908           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSL-----------EE  138 (670)
Q Consensus        73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~---~~~-----------~~  138 (670)
                      ..++..+++.+|++++|+|+++..+.+...  .+..++..  ++|+++++||+|+......   ...           ..
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            998899999999999999998743222221  23334444  7899999999999642100   000           00


Q ss_pred             ----h----hhHHH------------HHhccCCeEEEeCcccCCCchHHHHHHHH
Q 005908          139 ----V----MGPIM------------QQFREIETCVECSATTMIQVPDVFYYAQK  173 (670)
Q Consensus       139 ----~----~~~~~------------~~~~~~~~~~~~SA~~~~gi~~l~~~i~~  173 (670)
                          .    ..++.            ..++...+++++||++|+|++++++.+..
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence                0    00111            12333358999999999999999987754

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.63  E-value=4.7e-15  Score=146.86  Aligned_cols=150  Identities=17%  Similarity=0.179  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch-------hhhHHHhccCCE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRADA   85 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~   85 (670)
                      +|+++|.+|||||||+|+|++... ..+++.+. .......+...+..+++|||||+.+..       .....+++.+|+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~   80 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL   80 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence            799999999999999999998763 22233221 111233344567889999999975432       123467899999


Q ss_pred             EEEEEECCChhh-HHHHHHHH----------------------------------------HHHHHhc------------
Q 005908           86 VVLTYACNQQST-LSRLSSYW----------------------------------------LPELRRL------------  112 (670)
Q Consensus        86 ii~v~d~~~~~s-~~~~~~~~----------------------------------------~~~l~~~------------  112 (670)
                      +++|+|++++.. .+.+.+.+                                        ...++++            
T Consensus        81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~  160 (233)
T cd01896          81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED  160 (233)
T ss_pred             EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence            999999987652 22221111                                        1111111            


Q ss_pred             -------------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          113 -------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       113 -------------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                                   ...+|+++|+||+|+....       ....++..    .+++++||++|.|++++++.+.+.+
T Consensus       161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~-------~~~~~~~~----~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE-------ELDLLARQ----PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCHHHHHHHHhCCceEeeEEEEEECccCCCHH-------HHHHHhcC----CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         1236999999999986432       22233332    2589999999999999999988764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd00880 Era_like Era (E

Probab=99.63  E-value=3.2e-15  Score=138.98  Aligned_cols=152  Identities=21%  Similarity=0.174  Sum_probs=102.1

Q ss_pred             EEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCccc-CCceeEEEEeCCCCccchh-------hhHHHhccCCEE
Q 005908           17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKG-------KLNEELKRADAV   86 (670)
Q Consensus        17 ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~i   86 (670)
                      |+|.+|+|||||++++++..+...  .++...... ..... .....+.+|||||+.....       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPV-EYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCe-EEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            589999999999999998764422  222111111 11112 2267899999999876543       334578999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      ++|+|.++..+.....  +.......  +.|+++|+||+|+...... .................+++++||+++.|+.+
T Consensus        80 l~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          80 LFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEE-EELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhH-HHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            9999999887766653  34444444  8999999999999865433 11100011112222234799999999999999


Q ss_pred             HHHHHHHH
Q 005908          167 VFYYAQKA  174 (670)
Q Consensus       167 l~~~i~~~  174 (670)
                      +++.+.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=4.1e-15  Score=134.82  Aligned_cols=161  Identities=21%  Similarity=0.211  Sum_probs=127.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .....+|+++|-.|+||||++++|.-++.... .||++  +.+..+.+.  ...+.+||..|++.++.+  +..|+++.+
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~l--W~~Y~~~t~   86 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPL--WKHYFQNTQ   86 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccc--hhhhccCCc
Confidence            45679999999999999999999998887766 57776  555666665  577888999999999999  999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC----CcEEeecccC
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE----PPIPVSMKSK  575 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~vSA~~g  575 (670)
                      ++|+|+|.+|++.+.+.+..+..+.......  +.|+++.+||.|+...-. ..++.+......+.    .+..++|.+|
T Consensus        87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~--~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~iq~~~a~~G  163 (181)
T KOG0070|consen   87 GLIFVVDSSDRERIEEAKEELHRMLAEPELR--NAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHIQSTCAISG  163 (181)
T ss_pred             EEEEEEeCCcHHHHHHHHHHHHHHHcCcccC--CceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEEeecccccc
Confidence            9999999999988888887777776655433  799999999999987322 22222222222211    3678999999


Q ss_pred             -ChHHHHHHHHHHHhC
Q 005908          576 -DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~  590 (670)
                       |+.+.++++.+.+..
T Consensus       164 ~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  164 EGLYEGLDWLSNNLKK  179 (181)
T ss_pred             ccHHHHHHHHHHHHhc
Confidence             999999999998764

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.63  E-value=6.8e-15  Score=163.94  Aligned_cols=156  Identities=14%  Similarity=0.108  Sum_probs=112.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP---FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~---~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +.|+++|.+|+|||||+++|++..   +......+++.+.....+++++  ..+.+||++|++.|...  +...+.++|+
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~--~~~g~~~aD~   76 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISN--AIAGGGGIDA   76 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHH--HHhhhccCCE
Confidence            468999999999999999999743   2222233444445555566663  67889999999888766  6778899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc---HHHHHHHHHHhCC---CCcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI---EPPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~---~~~~~~~~~~~~~---~~~~~vSA~  573 (670)
                      +++|+|++++... +..+.+..+...      ++| +++|+||+|+.+....   .+++.++.+..++   .+++++||+
T Consensus        77 aILVVDa~~G~~~-qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        77 ALLVVDADEGVMT-QTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEEEECCCCCcH-HHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            9999999985332 222333333322      577 9999999999864322   3455566665542   369999999


Q ss_pred             cC-ChHHHHHHHHHHHhC
Q 005908          574 SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~  590 (670)
                      +| |++++++.+.+.+..
T Consensus       150 tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       150 TGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCchhHHHHHHHHHHh
Confidence            99 999999999887754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.63  E-value=8.7e-15  Score=142.34  Aligned_cols=161  Identities=17%  Similarity=0.156  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CCcccceEEEEEE-----------------------cC--C----
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVNVVD-----------------------QP--G----  469 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----~t~~~~~~~~~vd-----------------------~~--g----  469 (670)
                      ++|+++|..++|||||+.++.+........     .+....+......                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999997652111100     0111111100000                       00  1    


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      ....+.+||++|++.+...  +...+..+|++++|+|++++.........+..+....     ..|+++|+||+|+....
T Consensus        81 ~~~~i~~iDtPG~~~~~~~--~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          81 LVRHVSFVDCPGHEILMAT--MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             cccEEEEEECCChHHHHHH--HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEEEEchhccCHH
Confidence            1156788999999887665  6777889999999999997421111222222222221     25799999999997633


Q ss_pred             ccH---HHHHHHHHHh--CCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          550 MAV---QDSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       550 ~~~---~~~~~~~~~~--~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ...   +..+++.+.+  ...+++++||++| |++++++.+.+.+..|
T Consensus       154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            222   2333333332  1235999999999 9999999999877643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.62  E-value=1.4e-14  Score=165.15  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=111.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc--------hHhh
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS--------NKEA  494 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~--------~~~~  494 (670)
                      .++|+++|.||||||||+|+|++........+.++.+.....++.  +...+.++|++|...+.....        ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            478999999999999999999987653322232232233233433  345677899999755432100        1223


Q ss_pred             --cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908          495 --LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       495 --~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                        ...+|++++|+|+++.+.   ...+..++.+.      ++|+++|+||+|+.+++......+++.+.++.+ ++++||
T Consensus        81 l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-VvpiSA  150 (772)
T PRK09554         81 ILSGDADLLINVVDASNLER---NLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIPLVS  150 (772)
T ss_pred             HhccCCCEEEEEecCCcchh---hHHHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEEEEe
Confidence              258999999999998643   23344555544      799999999999986555567778888999976 999999


Q ss_pred             ccC-ChHHHHHHHHHHHh
Q 005908          573 KSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~~~  589 (670)
                      ++| |++++.+.+.+...
T Consensus       151 ~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        151 TRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             ecCCCHHHHHHHHHHhhh
Confidence            999 99999999988764

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=2.5e-14  Score=132.63  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=108.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhhhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS  490 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~~~  490 (670)
                      ...+-|+++|++|||||||+|+|+++....-...|.+....+..+.+.++   +.++|.+|          .+.+..+  
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~--   96 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL--   96 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH--
Confidence            45679999999999999999999997643333345554445555555532   44566666          2233333  


Q ss_pred             hHhhc---ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC--
Q 005908          491 NKEAL---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE--  565 (670)
Q Consensus       491 ~~~~~---~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--  565 (670)
                      ...|+   .+..++++++|+..+.. +...+.+.-+...      ++|+++|+||+|+.+...........++.+...  
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~-~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~  169 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPK-DLDREMIEFLLEL------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP  169 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence            33444   34678999999988755 2233445555544      799999999999998666666666677666543  


Q ss_pred             -C--cEEeecccC-ChHHHHHHHHHHHh
Q 005908          566 -P--PIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       566 -~--~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                       .  ++.+|+.++ |++++...|.+.+.
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhh
Confidence             1  788999999 99999999988764

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.62  E-value=3.5e-15  Score=129.36  Aligned_cols=169  Identities=17%  Similarity=0.261  Sum_probs=141.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      -.+||.++|++.+|||||+-.++++++...+..+.+..+.-+.+...|....+.|||-.|++++..+  .+-+.+++-++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~--lPiac~dsvaI   96 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM--LPIACKDSVAI   96 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc--CceeecCcEEE
Confidence            4599999999999999999999999988777678888888888999988889999999999888776  67788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC------CcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP------YTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      +++||.+.+.++..+..|+++.......   .+| |+||+|.|+--      +.....+++.+++.++.. .+++|+..+
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~Nkt---AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts~s  171 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKT---AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTSHS  171 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCc---cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeecccc
Confidence            9999999999999999999998876543   356 56899998632      112256677788888877 999999999


Q ss_pred             -ChHHHHHHHHHHHhCCCCCCCC
Q 005908          576 -DLNNVFSRIIWAAEHPHLNIPE  597 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~~~~~~~  597 (670)
                       ||.++|.-+...+.+....+|+
T Consensus       172 INv~KIFK~vlAklFnL~~ti~~  194 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNLPWTIPE  194 (205)
T ss_pred             ccHHHHHHHHHHHHhCCceeccc
Confidence             9999999998888766655554

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=6.6e-16  Score=137.02  Aligned_cols=167  Identities=15%  Similarity=0.154  Sum_probs=121.6

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCC---CCC----CCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPE----KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (670)
                      .+..+.|+|+|..|+|||||+.++-...   +..    ...++.+-  ....+...+..+.+||.+|++...++|..+|.
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence            4567899999999999999999885332   111    11121211  12233344778999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcc
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSAT  159 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~  159 (670)
                      .+|++|+++|+++++.|+.....+-+.+.. ...+.|+++.+||.|+.+.-.+..++..... +...+ ...++.+|||.
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccCccccchhh
Confidence            999999999999999998887655555533 3458999999999999875433112222221 22222 23479999999


Q ss_pred             cCCCchHHHHHHHHHHcCC
Q 005908          160 TMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~  178 (670)
                      +|+||++-.+++.+.+..+
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999988765

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.62  E-value=2.6e-15  Score=167.36  Aligned_cols=145  Identities=19%  Similarity=0.148  Sum_probs=103.7

Q ss_pred             cCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh------hHHHh--ccCCEEEEE
Q 005908           19 GDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL--KRADAVVLT   89 (670)
Q Consensus        19 G~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~ii~v   89 (670)
                      |+||||||||+|+|++.++ ..+.|++... .....+..++.++.+|||||+.++...      ...++  +.+|++++|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~-~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V   79 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVE-KKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV   79 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEE-EEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence            8999999999999998875 3335543222 122334445677999999999876543      23333  478999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      +|.++.+..   . ++...+.+.  ++|+++|+||+|+.+.... .  ...+.+.+.++  .+++++||++|.|++++++
T Consensus        80 vDat~ler~---l-~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i-~--~d~~~L~~~lg--~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        80 VDASNLERN---L-YLTLQLLEL--GIPMILALNLVDEAEKKGI-R--IDEEKLEERLG--VPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             ecCCcchhh---H-HHHHHHHhc--CCCEEEEEehhHHHHhCCC-h--hhHHHHHHHcC--CCEEEEECCCCCCHHHHHH
Confidence            999875421   1 244444444  7999999999998765443 2  23466677776  3799999999999999999


Q ss_pred             HHHHHH
Q 005908          170 YAQKAV  175 (670)
Q Consensus       170 ~i~~~~  175 (670)
                      .+.+..
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=6.7e-15  Score=151.62  Aligned_cols=215  Identities=22%  Similarity=0.207  Sum_probs=137.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCcc-chhh--------
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLE-NKGK--------   75 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~~--------   75 (670)
                      .+..++|+|+|+||||||||+|.|.+...  +...|+   +|+  +...++.+++++.+.||+|..+ ....        
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G---TTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG---TTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC---cchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHH
Confidence            45679999999999999999999999884  343444   444  6777888999999999999875 2111        


Q ss_pred             hHHHhccCCEEEEEEEC--CChhhHHHHHHHHHHHHHhc-------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-
Q 005908           76 LNEELKRADAVVLTYAC--NQQSTLSRLSSYWLPELRRL-------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-  145 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~--~~~~s~~~~~~~~~~~l~~~-------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-  145 (670)
                      ....++.||++++|+|+  ++.++...+.+ .+......       ....|++++.||+|+...-....... ...... 
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~  419 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAE  419 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccc
Confidence            22668899999999998  44444444332 33333221       12589999999999987522101100 001111 


Q ss_pred             HhccCCeEEEeCcccCCCchHHHHHHHHHHcC----CCCCCC--cccc-ccccHHHHH-HHHHHHHHhCCCCCCCCChHH
Q 005908          146 QFREIETCVECSATTMIQVPDVFYYAQKAVLH----PTAPLF--DHDE-QTLKPRCVR-ALKRIFIICDHDMDGALNDAE  217 (670)
Q Consensus       146 ~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~----~~~~~~--~~~~-~~~~~~~~~-~l~ri~~~~d~~~~~~l~~~e  217 (670)
                      ..+......++|+++++|+++|.+.+.+.+..    +..+.+  ...+ +.....+.. .+.+.+...+...|..+..++
T Consensus       420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~  499 (531)
T KOG1191|consen  420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEP  499 (531)
T ss_pred             cCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccch
Confidence            11122246679999999999999988887632    222222  1111 122222332 567777666666777888888


Q ss_pred             HHHHhhhhcCC
Q 005908          218 LNEFQVKCFNA  228 (670)
Q Consensus       218 l~~~q~~~~~~  228 (670)
                      ++..+...-..
T Consensus       500 lR~a~~~i~r~  510 (531)
T KOG1191|consen  500 LRLAQRSIARI  510 (531)
T ss_pred             HHHHHhhhccc
Confidence            87777654433

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.61  E-value=4.2e-15  Score=165.71  Aligned_cols=147  Identities=19%  Similarity=0.199  Sum_probs=106.9

Q ss_pred             cCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc----hHhh--cccccEEEE
Q 005908          430 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEA--LASCDVTIF  503 (670)
Q Consensus       430 G~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~----~~~~--~~~ad~vll  503 (670)
                      |+||||||||+|++++......+.++++.+.....+..+|  ..+.+||++|+..+.....    ...+  ...+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999876444445555445445555553  3567899999866543200    2222  247999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                      |+|+++.+   ....+..++.+.      ++|+++|+||+|+.+++....+.+.+++.++.+ ++++||++| |++++++
T Consensus        79 VvDat~le---r~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        79 VVDASNLE---RNLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTSATEGRGIERLKD  148 (591)
T ss_pred             EecCCcch---hhHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEECCCCCCHHHHHH
Confidence            99998743   223333444332      699999999999976555555678888888875 999999999 9999999


Q ss_pred             HHHHHH
Q 005908          583 RIIWAA  588 (670)
Q Consensus       583 ~l~~~~  588 (670)
                      .+.+..
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.61  E-value=8e-15  Score=140.81  Aligned_cols=151  Identities=17%  Similarity=0.165  Sum_probs=100.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--------CC---CCCC---CCCCeE--eCCcccCCceeEEEEeCCCCccchh
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESV--------PE---KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG   74 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--------~~---~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~   74 (670)
                      +.++|+++|+.++|||||+++|++...        ..   +...   ..+.+.  ....+..++..+.++||||+..+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            358999999999999999999986410        00   0000   001111  2233445678899999999988877


Q ss_pred             hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhcc---
Q 005908           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE---  149 (670)
Q Consensus        75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~---  149 (670)
                      .....+..+|++++|+|++....-..  ..++..+...  ++| +|+|.||+|+...... ....+.+..+...++.   
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            78888999999999999876533222  2355566665  676 7899999998643221 0122234444444432   


Q ss_pred             CCeEEEeCcccCCCch
Q 005908          150 IETCVECSATTMIQVP  165 (670)
Q Consensus       150 ~~~~~~~SA~~~~gi~  165 (670)
                      ..+++++||++|.|+.
T Consensus       157 ~v~iipiSa~~g~n~~  172 (195)
T cd01884         157 NTPIVRGSALKALEGD  172 (195)
T ss_pred             CCeEEEeeCccccCCC
Confidence            2479999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.61  E-value=1.1e-14  Score=163.24  Aligned_cols=159  Identities=15%  Similarity=0.204  Sum_probs=110.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcc--cceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~--~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (670)
                      ....++|+|+|.+|+|||||+++|.+..+.....++++  .......+...+....+.+||++|++.|..+  +..++..
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~m--r~rg~~~  318 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSM--RSRGANV  318 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHH--HHHHHHH
Confidence            34668999999999999999999998877654333222  2222222333334578889999999999887  6778899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHH------HHHhC-CCCcEEe
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV------TQELG-IEPPIPV  570 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~------~~~~~-~~~~~~v  570 (670)
                      +|++|+|+|++++...+.... +..+...      ++|+|+|+||+|+..... ....+++      ...++ ..+++++
T Consensus       319 aDiaILVVDA~dGv~~QT~E~-I~~~k~~------~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        319 TDIAILIIAADDGVKPQTIEA-INYIQAA------NVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPI  390 (742)
T ss_pred             CCEEEEEEECcCCCChhhHHH-HHHHHhc------CceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEE
Confidence            999999999998644332222 2233222      699999999999976321 1111111      22223 2469999


Q ss_pred             ecccC-ChHHHHHHHHHHH
Q 005908          571 SMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~  588 (670)
                      ||++| |++++++.+....
T Consensus       391 SAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        391 SASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ECCCCCCHHHHHHhhhhhh
Confidence            99999 9999999998765

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.61  E-value=6.7e-15  Score=138.48  Aligned_cols=156  Identities=19%  Similarity=0.137  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccc----------hhhhHHHhc--
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNEELK--   81 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~--   81 (670)
                      .|+++|++|+|||||+|++++..+.....+..+.+.....+... ..+.+|||||....          ......++.  
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            48999999999999999999766544433333332211112222 28999999996432          223334444  


Q ss_pred             -cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           82 -RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        82 -~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                       ..+++++++|.++..+....  .....+...  +.|+++|+||+|+.................+......+++++||++
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~  155 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK  155 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence             35789999998766433322  244555555  6899999999998643222011122222222112224789999999


Q ss_pred             CCCchHHHHHHHHH
Q 005908          161 MIQVPDVFYYAQKA  174 (670)
Q Consensus       161 ~~gi~~l~~~i~~~  174 (670)
                      +.|+.++++.+.+.
T Consensus       156 ~~~~~~l~~~l~~~  169 (170)
T cd01876         156 GQGIDELRALIEKW  169 (170)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.61  E-value=3.9e-15  Score=145.36  Aligned_cols=151  Identities=18%  Similarity=0.051  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC--C------------------C----CC-----CCCeE--eCCcccCCceeEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK--V------------------P----PV-----HAPTR--LPPDFYPDRVPVT   62 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~--~------------------~----~~-----~~~~~--~~~~~~~~~~~~~   62 (670)
                      +|+|+|++|+|||||+++|+...-...  .                  .    ..     .+.+.  ....+...+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999976431111  0                  0    00     00111  1223445677899


Q ss_pred             EEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--cchhhhh
Q 005908           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSLEEVM  140 (670)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~  140 (670)
                      +|||||+.++...+...++.+|++|+|+|+++...-...  .....++.. ...++|+|+||+|+......  ......+
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            999999988776677788999999999999875322221  133334443 12457889999998753211  0112233


Q ss_pred             hHHHHHhcc-CCeEEEeCcccCCCchHH
Q 005908          141 GPIMQQFRE-IETCVECSATTMIQVPDV  167 (670)
Q Consensus       141 ~~~~~~~~~-~~~~~~~SA~~~~gi~~l  167 (670)
                      ..+.+.++. ..+++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            444455542 135899999999999853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.61  E-value=5.4e-17  Score=145.13  Aligned_cols=170  Identities=16%  Similarity=0.287  Sum_probs=145.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-eEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~-~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+-+|+.|+|.-+|||||++.+++...|...+..|++.++..++..++... .++.+||.+|++++..+  +.-+++.++
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m--trVyykea~  100 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM--TRVYYKEAH  100 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce--EEEEecCCc
Confidence            455899999999999999999999999999888999999988887777433 35668999999999988  888999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHhCCCCcEEeecccC-
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +.++|||+++..+|+....|.+++..... ..+...|+|+..||||..+....  .....++++++++...+++|||.+ 
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999998864432 33346889999999999874433  477888999999999999999999 


Q ss_pred             ChHHHHHHHHHHHhCCC
Q 005908          576 DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~~~  592 (670)
                      |++|+.+.+++.+....
T Consensus       181 ni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVND  197 (229)
T ss_pred             ChhHHHHHHHHHHHhhc
Confidence            99999999999875433

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=2.4e-14  Score=132.73  Aligned_cols=163  Identities=17%  Similarity=0.129  Sum_probs=109.4

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhh
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGK   75 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~   75 (670)
                      ..+.....-|+++|++|||||||||+|++.+-....+.+.+.|.....+...+ .+.++|.||...          ...+
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHH
Confidence            33445667899999999999999999999762222233333555333344333 289999999652          2233


Q ss_pred             hHHHhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC-
Q 005908           76 LNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE-  151 (670)
Q Consensus        76 ~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-  151 (670)
                      +..|++.   -.++++++|+..+....+.  ..++++...  ++|+++|+||+|.......   ...+...++.+.... 
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~  169 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPP  169 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCC
Confidence            4456644   3678889997766554443  488888887  8999999999999875432   122233333332111 


Q ss_pred             ---eEEEeCcccCCCchHHHHHHHHHHc
Q 005908          152 ---TCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       152 ---~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                         .++..|+.++.|++++...|...+.
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhh
Confidence               2788999999999999988876653

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.60  E-value=1.4e-14  Score=140.34  Aligned_cols=170  Identities=19%  Similarity=0.202  Sum_probs=115.3

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccch-----------
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENK-----------   73 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   73 (670)
                      .....+-+.|+++|.||||||||.|.+++.+.......+.+++ .+...+..+...+.++||||.-.-.           
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence            3445678999999999999999999999998655422222222 2555666778899999999965211           


Q ss_pred             -hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhH
Q 005908           74 -GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGP  142 (670)
Q Consensus        74 -~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~  142 (670)
                       +....++..||++++|+|+++.-..-+-  ..+..++.+ .++|-++|.||+|.......          ........+
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence             1123678889999999999874333222  255566554 38999999999998754211          000111112


Q ss_pred             HHHHhc---------------cCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          143 IMQQFR---------------EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       143 ~~~~~~---------------~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      +..++.               .+..+|.+||++|+||+++-+++...+.+.
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            222221               133589999999999999999999886543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.60  E-value=1.7e-14  Score=163.43  Aligned_cols=157  Identities=18%  Similarity=0.222  Sum_probs=109.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ...++.|+|+|..|+|||||+++|.+..+.....+.++.......+.+++  ..+.+||++|++.|..+  +...+..+|
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m--~~rga~~aD  362 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAM--RARGAQVTD  362 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhH--HHhhhhhCC
Confidence            45678999999999999999999998776654433333333334455553  56788999999998887  667889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHH---HHHHHhC-CCCcEEeecc
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSA---RVTQELG-IEPPIPVSMK  573 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~---~~~~~~~-~~~~~~vSA~  573 (670)
                      ++|+|+|++++..-+... .+..+...      ++|+|+++||+|+......  ..+..   .++..++ ..+++++||+
T Consensus       363 iaILVVdAddGv~~qT~e-~i~~a~~~------~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        363 IVVLVVAADDGVMPQTIE-AINHAKAA------GVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEEEEEECCCCCCHhHHH-HHHHHHhc------CCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            999999999864322222 22333222      7999999999999653211  11111   1122233 2369999999


Q ss_pred             cC-ChHHHHHHHHHH
Q 005908          574 SK-DLNNVFSRIIWA  587 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~  587 (670)
                      +| |++++++.|...
T Consensus       436 tG~GI~eLle~I~~~  450 (787)
T PRK05306        436 TGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCchHHHHhhhhh
Confidence            99 999999999764

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.59  E-value=8e-15  Score=159.03  Aligned_cols=159  Identities=19%  Similarity=0.139  Sum_probs=103.5

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--------------------------------CCCCCCCeEeCCccc
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------------------------------VPPVHAPTRLPPDFY   55 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~~   55 (670)
                      ..++.++|+++|++++|||||+++|+...-...                                .+++. .......+.
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T-~d~~~~~~~   80 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVT-IDLAHKKFE   80 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcc-ceeeeEEEe
Confidence            456789999999999999999999985431110                                11111 011223355


Q ss_pred             CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--
Q 005908           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--  133 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--  133 (670)
                      .+++.+.+|||||++++...+...++.+|++|+|+|+++..+.......++..++... ..|+++|+||+|+......  
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHH
Confidence            6788999999999988876666778899999999999873222221112333444442 3469999999999753211  


Q ss_pred             cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHHH
Q 005908          134 TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (670)
Q Consensus       134 ~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~  168 (670)
                      ....+.+..+...++.   ..+++++||++|.|++++.
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            0112334444444442   1369999999999998754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.59  E-value=1.7e-14  Score=160.85  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=110.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCC-----CC---------CCC-CCeEeCCcc---cCCceeEEEEeCCCCccc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES--VPEK-----VP---------PVH-APTRLPPDF---YPDRVPVTIIDTSSSLEN   72 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~--~~~~-----~~---------~~~-~~~~~~~~~---~~~~~~~~i~Dt~G~~~~   72 (670)
                      -+|+|+|+.++|||||+.+|+...  +...     ..         +.. ........+   +..++.+++|||||+.+|
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            479999999999999999998642  1110     00         000 000011111   334688999999999999


Q ss_pred             hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-C
Q 005908           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-E  151 (670)
Q Consensus        73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~  151 (670)
                      ...+..+++.+|++|+|+|+++......... |.... ..  ++|+++|+||+|+....    .......+...++.. .
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-~~--~lpiIvViNKiDl~~a~----~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-EN--DLEIIPVLNKIDLPAAD----PERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-HC--CCCEEEEEECCCCCccc----HHHHHHHHHHHhCCCcc
Confidence            9889999999999999999998766555442 44332 23  78999999999986432    222233444444321 2


Q ss_pred             eEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          152 TCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      .++++||++|.||+++++.+.+.+..+.
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            4899999999999999999998876553

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.59  E-value=4.5e-14  Score=135.64  Aligned_cols=146  Identities=18%  Similarity=0.182  Sum_probs=96.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC------CCCCCCC-----C---CcccceEEEEEEcCCCceEEEEEecCChhhHhhh
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER------PFSENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~------~~~~~~~-----~---t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~  488 (670)
                      .++|+++|.+++|||||+++|++.      .....+.     +   ..+.......+....+...+.++|++|...+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            378999999999999999999864      1100000     0   1111122222223324557788999998776654


Q ss_pred             hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHHHhC
Q 005908          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQELG  563 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~~~~  563 (670)
                        ....+..+|++++|+|++.+.. ......+..+...      ++| +|+++||+|+......    .+++.++.+.++
T Consensus        82 --~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g  152 (195)
T cd01884          82 --MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG  152 (195)
T ss_pred             --HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence              5777889999999999988644 3344444555444      576 7789999999743322    334555666666


Q ss_pred             C----CCcEEeecccC-Ch
Q 005908          564 I----EPPIPVSMKSK-DL  577 (670)
Q Consensus       564 ~----~~~~~vSA~~g-~v  577 (670)
                      +    .|++++||++| |+
T Consensus       153 ~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         153 FDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             ccccCCeEEEeeCccccCC
Confidence            5    46999999999 85

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.59  E-value=2.1e-14  Score=155.04  Aligned_cols=157  Identities=20%  Similarity=0.226  Sum_probs=115.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh------hhHhhhhchHhhc-
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EGVKKILSNKEAL-  495 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~------~~~~~~~~~~~~~-  495 (670)
                      ..+|+++|.||||||||+|+++|.+-.....|.++.+...-.+...|+  .+.++|.+|.      ..-+.+  +++++ 
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~V--ar~~ll   78 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKV--ARDFLL   78 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHH--HHHHHh
Confidence            357999999999999999999998766555555544444333333322  2444555552      222334  44444 


Q ss_pred             -ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       496 -~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                       .+.|+++-|+|+++-+   .-.....++.+.      +.|++++.|++|..+++....+.+++.+.+|.+ ++++||++
T Consensus        79 ~~~~D~ivnVvDAtnLe---RnLyltlQLlE~------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-Vv~tvA~~  148 (653)
T COG0370          79 EGKPDLIVNVVDATNLE---RNLYLTLQLLEL------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-VVPTVAKR  148 (653)
T ss_pred             cCCCCEEEEEcccchHH---HHHHHHHHHHHc------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC-EEEEEeec
Confidence             4679999999999853   233334445554      799999999999999888888899999999988 99999999


Q ss_pred             C-ChHHHHHHHHHHHhCCCC
Q 005908          575 K-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~~~~  593 (670)
                      | |++++.+.+.+.......
T Consensus       149 g~G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         149 GEGLEELKRAIIELAESKTT  168 (653)
T ss_pred             CCCHHHHHHHHHHhcccccc
Confidence            9 999999999998765443

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.1e-14  Score=150.14  Aligned_cols=194  Identities=18%  Similarity=0.124  Sum_probs=126.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhh-------Hhhhhc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILS  490 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~  490 (670)
                      .+.+++|+|+|+||||||||+|+|.+.++.++++  +||++.+. ..++++|  ..+.+.||+|-.+       ...+.+
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaie-a~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIE-AQVTVNG--VPVRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhhe-eEeecCC--eEEEEEeccccccccCChhHHHhHHH
Confidence            3456999999999999999999999999999987  56666554 3455553  4566689988432       223556


Q ss_pred             hHhhcccccEEEEEEEC--CCcccHHHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHh--
Q 005908          491 NKEALASCDVTIFVYDS--SDEYSWKRTKELLVEVARLGE---DSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQEL--  562 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~--s~~~s~~~~~~~~~~i~~~~~---~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~--  562 (670)
                      ....++.+|++++|+|+  ++-++-..+.+.+.....-..   ......|++++.||+|+... .........+....  
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~  421 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGR  421 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccC
Confidence            78889999999999999  443333333344443322111   01124789999999999874 11111111111111  


Q ss_pred             -CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhh
Q 005908          563 -GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLV  616 (670)
Q Consensus       563 -~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (670)
                       .++...++|++++ |++.|...+.+.+......+........+.++.+.++....
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~  477 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAA  477 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhh
Confidence             2234566999999 99999999999876554443333334445566666655443

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.58  E-value=1.8e-14  Score=155.66  Aligned_cols=158  Identities=15%  Similarity=0.142  Sum_probs=120.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHh--c
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEEL--K   81 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~--~   81 (670)
                      +..+|+++|+||||||||+|+|++.+ .+.++|+++ ..++...+...+.+++++|.||.....      .....++  .
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            45679999999999999999999987 677788844 333566777778889999999975432      2333444  3


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      .+|+++-|+|+++.+.--    ++.-++.+.  ++|++++.|++|......+ ..  ..+.+.+.+|  .|++++||++|
T Consensus        81 ~~D~ivnVvDAtnLeRnL----yltlQLlE~--g~p~ilaLNm~D~A~~~Gi-~I--D~~~L~~~LG--vPVv~tvA~~g  149 (653)
T COG0370          81 KPDLIVNVVDATNLERNL----YLTLQLLEL--GIPMILALNMIDEAKKRGI-RI--DIEKLSKLLG--VPVVPTVAKRG  149 (653)
T ss_pred             CCCEEEEEcccchHHHHH----HHHHHHHHc--CCCeEEEeccHhhHHhcCC-cc--cHHHHHHHhC--CCEEEEEeecC
Confidence            569999999998865322    244445555  8999999999999877665 32  2467778887  48999999999


Q ss_pred             CCchHHHHHHHHHHcCCCC
Q 005908          162 IQVPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~  180 (670)
                      .|++++.+.+.+....+..
T Consensus       150 ~G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         150 EGLEELKRAIIELAESKTT  168 (653)
T ss_pred             CCHHHHHHHHHHhcccccc
Confidence            9999999999887655543

>cd00880 Era_like Era (E

Probab=99.58  E-value=2.8e-14  Score=132.63  Aligned_cols=152  Identities=25%  Similarity=0.240  Sum_probs=101.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh-----hchHhhcccccEE
Q 005908          428 LFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALASCDVT  501 (670)
Q Consensus       428 ivG~~~vGKSSLin~l~~~~~~~~~-~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~ad~v  501 (670)
                      |+|++|+|||||+|++++....... .+++............ ....+.+||++|.......     ......+..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987665322 2222222333333333 2456778999996443321     1144577899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH---HHHHHHhCCCCcEEeecccC-Ch
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS---ARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++|+|+++..+..... +.......      +.|+++|+||+|+..........   ..........+++++||+++ |+
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~~------~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  152 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRER------GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI  152 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHhc------CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence            9999999987755544 33333332      69999999999998744332221   11222233347999999999 99


Q ss_pred             HHHHHHHHHH
Q 005908          578 NNVFSRIIWA  587 (670)
Q Consensus       578 ~~l~~~l~~~  587 (670)
                      +++++.+.+.
T Consensus       153 ~~l~~~l~~~  162 (163)
T cd00880         153 DELREALIEA  162 (163)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.58  E-value=1.6e-14  Score=143.77  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=70.7

Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (670)
                      +++..+.+.+++++|++++|||++++. +++.+. +|+..+...  ++|++||+||+||.+...+  ..+..+.+. +.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~~--~i~~vIV~NK~DL~~~~~~--~~~~~~~~~-~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEAQ--NIEPIIVLNKIDLLDDEDM--EKEQLDIYR-NIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEECcccCCCHHH--HHHHHHHHH-HCC
Confidence            456677778999999999999999887 888887 588777654  8999999999999754433  223333333 343


Q ss_pred             cCCeEEEeCcccCCCchHHHH
Q 005908          149 EIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       149 ~~~~~~~~SA~~~~gi~~l~~  169 (670)
                        .+++++||++|.||+++|+
T Consensus        98 --~~v~~~SAktg~gi~eLf~  116 (245)
T TIGR00157        98 --YQVLMTSSKNQDGLKELIE  116 (245)
T ss_pred             --CeEEEEecCCchhHHHHHh
Confidence              3799999999999998876

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.58  E-value=1.2e-14  Score=124.08  Aligned_cols=158  Identities=15%  Similarity=0.224  Sum_probs=121.9

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+++||.++|-.|+|||||+..|.+.....-.|+ .+-..+.+.+ .+.+.+++||.+|+...+..|..|+.+.|++|
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT-~GFn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT-NGFNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChhhcccc-CCcceEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            447899999999999999999999988765444443 3333333333 45689999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc------cCCeEEEeCccc
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------EIETCVECSATT  160 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~SA~~  160 (670)
                      +|+|.+|..-|+++.+++.+.+.. .....|+++..||.|+.....+       +.++.+..      ...++-+|||.+
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-------eeia~klnl~~lrdRswhIq~csals  163 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-------EEIALKLNLAGLRDRSWHIQECSALS  163 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-------HHHHHhcchhhhhhceEEeeeCcccc
Confidence            999999999999988877777754 2347999999999998765433       11111111      112688999999


Q ss_pred             CCCchHHHHHHHHH
Q 005908          161 MIQVPDVFYYAQKA  174 (670)
Q Consensus       161 ~~gi~~l~~~i~~~  174 (670)
                      ++|+.+-.++++..
T Consensus       164 ~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  164 LEGSTDGSDWVQSN  177 (185)
T ss_pred             ccCccCcchhhhcC
Confidence            99999988887764

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=8e-14  Score=126.14  Aligned_cols=162  Identities=17%  Similarity=0.133  Sum_probs=120.6

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-------CCCCCCCeEeCCccc----CCceeEEEEeCCCCccchh
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------VPPVHAPTRLPPDFY----PDRVPVTIIDTSSSLENKG   74 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~   74 (670)
                      ........||+|.|+-++||||++.++........       .......++...++.    .++..+.++|||||++|.-
T Consensus         4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF   83 (187)
T ss_pred             ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence            34456789999999999999999999987763111       111111233322322    3457899999999999999


Q ss_pred             hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV  154 (670)
Q Consensus        75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (670)
                      +|+.+.+++.++|+++|.+.+..++. . .+++.+....+ +|+++++||.|+.+....    +.+.++.+.-..-.+.+
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~~~-ip~vVa~NK~DL~~a~pp----e~i~e~l~~~~~~~~vi  156 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSRNP-IPVVVAINKQDLFDALPP----EKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhccC-CCEEEEeeccccCCCCCH----HHHHHHHHhccCCCcee
Confidence            99999999999999999999988833 3 47888877633 999999999999987544    33334333331124799


Q ss_pred             EeCcccCCCchHHHHHHHHH
Q 005908          155 ECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~  174 (670)
                      +++|.++++..+.++.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999999887766

>cd04167 Snu114p Snu114p subfamily

Probab=99.57  E-value=1.8e-14  Score=141.41  Aligned_cols=148  Identities=17%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------CCCC------CCeE--eCCcc-----cCCceeEEEEeCCCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPVH------APTR--LPPDF-----YPDRVPVTIIDTSSS   69 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~-----------~~~~------~~~~--~~~~~-----~~~~~~~~i~Dt~G~   69 (670)
                      +|+|+|+.|+|||||+++|+........           ....      +.+.  ....+     ....+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999976543221           0000      0000  00011     234688999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC-------ccchh---hh
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-------ATSLE---EV  139 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-------~~~~~---~~  139 (670)
                      .++......++..+|++++|+|+++..+....  .++......  ++|+++|+||+|+.....       .....   +.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            99988888999999999999999887665442  355555544  699999999999862110       00111   22


Q ss_pred             hhHHHHHhcc---------CCeEEEeCcccCCCch
Q 005908          140 MGPIMQQFRE---------IETCVECSATTMIQVP  165 (670)
Q Consensus       140 ~~~~~~~~~~---------~~~~~~~SA~~~~gi~  165 (670)
                      +..++..++.         -..+++.||+.+.++.
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            2333333321         0137789999998876

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=9.9e-15  Score=129.61  Aligned_cols=164  Identities=18%  Similarity=0.229  Sum_probs=124.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCC---CC--CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPF---SE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL  495 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~---~~--~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~  495 (670)
                      +..+.|+|+|..|+|||||+.++-....   ..  .+.-+++....+-.+++.  ...+.+||-.|++..+++  +..+|
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSl--w~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSL--WKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHH--HHHHH
Confidence            4568899999999999999998764321   11  111244444555666665  456778999999999999  99999


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHH---HHHhCCC--CcEEe
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV---TQELGIE--PPIPV  570 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~v  570 (670)
                      ..|+++|+++|+++++.|+.....++.+.......  +.|+++.+||-|+.+... ..++...   +...+-+  ++.+|
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le--g~p~L~lankqd~q~~~~-~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE--GAPVLVLANKQDLQNAME-AAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc--CCchhhhcchhhhhhhhh-HHHHHHHhhhhhhcCCccCccccc
Confidence            99999999999999999998888877776654444  899999999999987332 2222222   2333322  68999


Q ss_pred             ecccC-ChHHHHHHHHHHHhCC
Q 005908          571 SMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ||.+| ||++-.+++.+.+...
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            99999 9999999999998765

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=9e-15  Score=125.31  Aligned_cols=160  Identities=13%  Similarity=0.123  Sum_probs=122.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++.+|.++|-.|+||||+..++--.+.+.+.|+.....   ..+..++.++++||.+|+......|+.|+.+.|++|+|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnv---e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV   93 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNV---ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV   93 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCc---cccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence            78999999999999999999998888777766644332   234457899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCc--cchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNA--TSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |.+|+....-....++..+++. -.+..+++++||.|....-..  ....-.+..+.++.   ..+|++||.+|+|+++.
T Consensus        94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~---~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRI---WQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhe---eEEEeeccccccCCcHH
Confidence            9999876665555577777542 236778899999997654211  01111222232222   37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      ++++.+.+.
T Consensus       171 ~DWL~~~l~  179 (182)
T KOG0072|consen  171 MDWLQRPLK  179 (182)
T ss_pred             HHHHHHHHh
Confidence            999998764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.57  E-value=6.7e-14  Score=138.63  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCCcccceEEEEEEcCCCceEEEEEecCChhhHh----h-hhchHhhcccc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----K-ILSNKEALASC  498 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----~-~~~~~~~~~~a  498 (670)
                      +|+++|.+|||||||+|+|.+...... +..|+. ......+...  ...+.+||++|..+..    . ..+....++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~-~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTL-TCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccc-cceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            789999999999999999998764322 222332 2223334444  2467789999963322    1 11135678999


Q ss_pred             cEEEEEEECCCccc-HHHHHHHHHH----------------------------------------HH-Hh----------
Q 005908          499 DVTIFVYDSSDEYS-WKRTKELLVE----------------------------------------VA-RL----------  526 (670)
Q Consensus       499 d~vllv~D~s~~~s-~~~~~~~~~~----------------------------------------i~-~~----------  526 (670)
                      |++++|+|++++.. .+.+.+.+..                                        +. ++          
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            99999999987642 2222222210                                        00 00          


Q ss_pred             -----------cCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          527 -----------GEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       527 -----------~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                                 ......-+|+++|+||+|+..    .++.+.+++.   ++++++||++| |++++++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~----~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS----IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC----HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                       001011369999999999975    3344444432   35899999999 99999999998764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.57  E-value=2.6e-14  Score=140.32  Aligned_cols=152  Identities=21%  Similarity=0.169  Sum_probs=102.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC------------CCCeE------eC--------------------Cccc
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPV------------HAPTR------LP--------------------PDFY   55 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~------------~~~~~------~~--------------------~~~~   55 (670)
                      ||+++|+.++|||||+++|..+.|.......            .+.+.      +.                    ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999976653321100            00000      00                    0011


Q ss_pred             CCceeEEEEeCCCCccchhhhHHHhc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908           56 PDRVPVTIIDTSSSLENKGKLNEELK--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~  133 (670)
                      ..+..+.++||||++++.......+.  .+|++++|+|++....-..  ..++..+...  ++|+++|.||+|+.+... 
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~-  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANI-  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHH-
Confidence            23567999999999888666555554  6899999999876644333  2467777766  789999999999865422 


Q ss_pred             cchhhhhhHHHHHh---------------------------ccCCeEEEeCcccCCCchHHHHHHH
Q 005908          134 TSLEEVMGPIMQQF---------------------------REIETCVECSATTMIQVPDVFYYAQ  172 (670)
Q Consensus       134 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~SA~~~~gi~~l~~~i~  172 (670)
                        .......+.+.+                           +...++|.+||.+|+|++++...+.
T Consensus       156 --~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         156 --LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             --HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence              222233332222                           2234899999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.57  E-value=4.2e-14  Score=156.34  Aligned_cols=156  Identities=14%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC----------------CceEEEEEecCChhhHh
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG----------------GNKKTLILQEIPEEGVK  486 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g----------------~~~~~~i~d~~g~~~~~  486 (670)
                      .+-|+|+|++|+|||||+|+|.+..+.....++++.......+..+.                ....+.+||++|++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            35799999999999999999999877554333222211111121110                01137789999999998


Q ss_pred             hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-------------cHH
Q 005908          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQ  553 (670)
Q Consensus       487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-------------~~~  553 (670)
                      .+  +..+++.+|++++|+|++++.+.+... .+..+...      +.|+++++||+|+.+.-.             ...
T Consensus        84 ~l--~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i~~l~~~------~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        84 NL--RKRGGALADLAILIVDINEGFKPQTQE-ALNILRMY------KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HH--HHHHHhhCCEEEEEEECCcCCCHhHHH-HHHHHHHc------CCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            87  677889999999999999853322221 22222222      689999999999974110             000


Q ss_pred             ----H--------HHHHHH------------Hh-CCCCcEEeecccC-ChHHHHHHHHHH
Q 005908          554 ----D--------SARVTQ------------EL-GIEPPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       554 ----~--------~~~~~~------------~~-~~~~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                          .        ..++.+            .+ +..+++++||++| |+++|++.+...
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                0        011111            11 1236999999999 999999988653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.57  E-value=1.2e-14  Score=157.71  Aligned_cols=159  Identities=18%  Similarity=0.121  Sum_probs=104.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC------------------------------CCCCCCCeEeCCcccC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------------------VPPVHAPTRLPPDFYP   56 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~   56 (670)
                      .++.++|+++|+.++|||||+++|+...  +...                              ..++. .......+..
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~T-id~~~~~~~~   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVT-IDVAHWKFET   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCce-EEEEEEEEcc
Confidence            5677999999999999999999998632  2110                              00100 0011233456


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHH-HHHHHHhcCCCCCEEEEEeCCCCCCCCCc--
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSY-WLPELRRLEIKVPIIVAGCKLDLRGDHNA--  133 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~-~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--  133 (670)
                      +++.+.||||||+++|.......+..+|++++|+|+++.+++...... +....+.. ...|+++|+||+|+.+....  
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHH
Confidence            678999999999988877666778999999999999987543221111 22223333 24579999999999743221  


Q ss_pred             cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHHHH
Q 005908          134 TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       134 ~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ....+.+..+.+..+.   ..+++++||++|.||.+++.
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            0112334455555541   24799999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.57  E-value=4e-14  Score=157.04  Aligned_cols=163  Identities=13%  Similarity=0.118  Sum_probs=112.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCC------------CCCCCeE--eCCcccCCceeEEEEeCCCCccchhh
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVP------------PVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGK   75 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (670)
                      --+|+|+|+.++|||||+++|+..  .|.....            ...+.+.  ....+.++++++++|||||+.+|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            457999999999999999999973  3332211            0011111  22344567899999999999999999


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-----C
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----I  150 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~  150 (670)
                      +..+++.+|++|+|+|+++.......  .++..+...  ++|+++|+||+|+...+.. ...+.+..+...++.     -
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARPD-WVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCchh-HHHHHHHHHHhccCccccccC
Confidence            99999999999999999876433332  244455544  7899999999998764332 111222222211111     1


Q ss_pred             CeEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 005908          151 ETCVECSATTMI----------QVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       151 ~~~~~~SA~~~~----------gi~~l~~~i~~~~~~~~  179 (670)
                      .+++.+||++|.          |+..+++.+...+..|.
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            368999999998          58889998888876553

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.56  E-value=8.4e-14  Score=155.39  Aligned_cols=160  Identities=15%  Similarity=0.207  Sum_probs=113.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCC-------C-C-----CCcccceEEEE--EEc---CCCceEEEEEecCChhh
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSEN-------Y-A-----PTTGEQYAVNV--VDQ---PGGNKKTLILQEIPEEG  484 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~-------~-~-----~t~~~~~~~~~--vd~---~g~~~~~~i~d~~g~~~  484 (670)
                      .-+|+|+|..++|||||+.+|+...-...       . +     .+.+..+....  +.+   +|....+.+|||+|+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            35899999999999999999986321110       0 0     01111122111  111   44567888999999988


Q ss_pred             HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC
Q 005908          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI  564 (670)
Q Consensus       485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  564 (670)
                      +...  +..+++.+|++|+|+|++++...+....|.... ..      ++|+++|+||+|+.... .....+++.+.+++
T Consensus        87 F~~~--v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~~------~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~  156 (600)
T PRK05433         87 FSYE--VSRSLAACEGALLVVDASQGVEAQTLANVYLAL-EN------DLEIIPVLNKIDLPAAD-PERVKQEIEDVIGI  156 (600)
T ss_pred             HHHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC------CCCEEEEEECCCCCccc-HHHHHHHHHHHhCC
Confidence            8776  678899999999999999987766665554432 22      68999999999986532 23334556666665


Q ss_pred             C--CcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          565 E--PPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       565 ~--~~~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      .  .++++||++| |+++++++|.+.+..|.
T Consensus       157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        157 DASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             CcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            4  4899999999 99999999999887654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.56  E-value=3.7e-14  Score=157.62  Aligned_cols=161  Identities=15%  Similarity=0.164  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC--CCCCCCCC------------CCCCe--EeCCcccCCceeEEEEeCCCCccchhhhH
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE--SVPEKVPP------------VHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLN   77 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (670)
                      +|+|+|+.++|||||+++|+..  .+......            ..+.+  .....+.++++++++|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            6999999999999999999863  23221100            00011  12233556789999999999999998899


Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-----CCe
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IET  152 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~  152 (670)
                      .+++.+|++++|+|+++...- ... .|+..+...  ++|+|+|+||+|+.+.+.. ...+.+..+...++.     ..+
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~-qT~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMP-QTR-FVLKKALEL--GLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcH-HHH-HHHHHHHHC--CCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccccccccCc
Confidence            999999999999999864322 222 366666665  7899999999998754322 112222333322211     136


Q ss_pred             EEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 005908          153 CVECSATTMI----------QVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       153 ~~~~SA~~~~----------gi~~l~~~i~~~~~~~~  179 (670)
                      ++.+||++|.          |+..+|+.+.+.+..+.
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence            8999999996          79999999998887653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.56  E-value=1.3e-13  Score=129.63  Aligned_cols=151  Identities=20%  Similarity=0.159  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh----------hhHhhhhchHhh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKILSNKEA  494 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~----------~~~~~~~~~~~~  494 (670)
                      .|+++|.+|||||||+|.+.+..+.....++.+.......+..++   .+.++|++|.          +.+...  ...+
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~--~~~~   75 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKL--IEEY   75 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHH--HHHH
Confidence            489999999999999999997666555555544444444555442   6677888883          222222  2223


Q ss_pred             c---ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHH---HH-HhCCCCc
Q 005908          495 L---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV---TQ-ELGIEPP  567 (670)
Q Consensus       495 ~---~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~-~~~~~~~  567 (670)
                      +   ..++++++++|.++..+... ......+...      +.|+++|+||+|+............+   .+ ....+++
T Consensus        76 ~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  148 (170)
T cd01876          76 LENRENLKGVVLLIDSRHGPTEID-LEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI  148 (170)
T ss_pred             HHhChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce
Confidence            3   45688999999987643222 2223333332      58999999999996543332222222   22 2334579


Q ss_pred             EEeecccC-ChHHHHHHHHHH
Q 005908          568 IPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       568 ~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      +++||+++ |+.++++.|.+.
T Consensus       149 ~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         149 ILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHHh
Confidence            99999999 999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.56  E-value=4.1e-14  Score=138.18  Aligned_cols=146  Identities=22%  Similarity=0.231  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcCCCceE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQPGGNKK  473 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~-------------------------------~t~~~~~~~~~vd~~g~~~~  473 (670)
                      +|+|+|.+|+|||||+++|+.........                               ..++.+.....+...  ...
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence            58999999999999999998654433210                               001111122233333  346


Q ss_pred             EEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc---
Q 005908          474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---  550 (670)
Q Consensus       474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~---  550 (670)
                      +.++|++|++.+...  ....++.+|++++|+|++++.. .........+... .    ..++|+|+||+|+.....   
T Consensus        79 ~~liDTpG~~~~~~~--~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~-~----~~~iIvviNK~D~~~~~~~~~  150 (208)
T cd04166          79 FIIADTPGHEQYTRN--MVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL-G----IRHVVVAVNKMDLVDYSEEVF  150 (208)
T ss_pred             EEEEECCcHHHHHHH--HHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc-C----CCcEEEEEEchhcccCCHHHH
Confidence            778999999877554  4567899999999999998743 2222222222222 1    245788999999975321   


Q ss_pred             --cHHHHHHHHHHhCCC--CcEEeecccC-ChHHH
Q 005908          551 --AVQDSARVTQELGIE--PPIPVSMKSK-DLNNV  580 (670)
Q Consensus       551 --~~~~~~~~~~~~~~~--~~~~vSA~~g-~v~~l  580 (670)
                        ...+.+++.+.+++.  +++++||++| |+.+.
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence              134455666677753  4899999999 98754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.56  E-value=2.7e-14  Score=153.35  Aligned_cols=165  Identities=16%  Similarity=0.122  Sum_probs=104.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CC----------------------eEeCCccc------CCcee
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-AP----------------------TRLPPDFY------PDRVP   60 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~----------------------~~~~~~~~------~~~~~   60 (670)
                      ++.++|+++|.+++|||||+++|.+........... +.                      ++.....+      .....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            578999999999999999999997542111000000 00                      00000000      12467


Q ss_pred             EEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh
Q 005908           61 VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM  140 (670)
Q Consensus        61 ~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~  140 (670)
                      +.+|||||+++|...+...+..+|++++|+|+++........+ .+..+.... ..|+++|+||+|+.+........+.+
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            9999999999988888888889999999999986431111111 223333331 35799999999997542210011222


Q ss_pred             hHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          141 GPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       141 ~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ..+.... ....+++++||++|.|++++++.+...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            2222221 11247999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.55  E-value=4.7e-14  Score=157.65  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCC-CCCCCCeEeCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES---VPEKV-PPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~---~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      +-|+++|+.++|||||+++|++..   +.+.. .++.-... ...+ ..++..+.+|||||+++|...+...+..+|+++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~-~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLG-YAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEee-eEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            358999999999999999998743   22221 11110000 0111 124567899999999988877788899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcccCCCch
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVP  165 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~gi~  165 (670)
                      +|+|+++...-...  ..+..++..  ++| +++|+||+|+.+........+.+..+....+ ...+++++||++|.|++
T Consensus        80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            99998874222221  133444444  456 5799999999754322011223333333332 12479999999999999


Q ss_pred             HHHHHHHHHH
Q 005908          166 DVFYYAQKAV  175 (670)
Q Consensus       166 ~l~~~i~~~~  175 (670)
                      ++++.+....
T Consensus       156 ~L~~~L~~~~  165 (614)
T PRK10512        156 ALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHhh
Confidence            9999987654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.55  E-value=3.2e-16  Score=140.27  Aligned_cols=166  Identities=16%  Similarity=0.171  Sum_probs=131.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      .-+|+.|+|+-||||||++.+++...|...+..+.+..+  .....+. .-+++.+||..|++++..+...+++.|++..
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            357999999999999999999999888777554444433  1112222 2467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      +|||+++..+|+... +|.+.+...     +...|+|+..||||....... .....+..+.++.+ +..++++|+|.+.
T Consensus       104 iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~keng-f~gwtets~Kenk  180 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENG-FEGWTETSAKENK  180 (229)
T ss_pred             EEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccC-ccceeeecccccc
Confidence            999999999999998 599888553     235788999999998765333 22345566666665 4579999999999


Q ss_pred             CchHHHHHHHHHHcCCC
Q 005908          163 QVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~~  179 (670)
                      ||+|....+++.++-+.
T Consensus       181 ni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVND  197 (229)
T ss_pred             ChhHHHHHHHHHHHhhc
Confidence            99999999999887555

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.55  E-value=8.1e-14  Score=154.89  Aligned_cols=157  Identities=24%  Similarity=0.270  Sum_probs=102.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC----CCeEeCCccc----CCc-----e-----eEEEEeCCCCcc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----APTRLPPDFY----PDR-----V-----PVTIIDTSSSLE   71 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~----~~~~~~~~~~----~~~-----~-----~~~i~Dt~G~~~   71 (670)
                      .+...|+|+|++|+|||||+++|.+..+....++..    +.+..+....    ...     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            355679999999999999999998776554444311    1111111100    000     1     278999999999


Q ss_pred             chhhhHHHhccCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc---------------
Q 005908           72 NKGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---------------  133 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~---------------  133 (670)
                      |..++...++.+|++++|+|+++   +++++.+     ..++..  ++|+++++||+|+......               
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            98888888999999999999987   4555443     334444  7999999999998521000               


Q ss_pred             ---cchhhhhhHH---HH-------------HhccCCeEEEeCcccCCCchHHHHHHHH
Q 005908          134 ---TSLEEVMGPI---MQ-------------QFREIETCVECSATTMIQVPDVFYYAQK  173 (670)
Q Consensus       134 ---~~~~~~~~~~---~~-------------~~~~~~~~~~~SA~~~~gi~~l~~~i~~  173 (670)
                         ...++....+   ..             .++...+++++||++|.|++++++.+..
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence               0000001111   11             1223347999999999999999987753

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.54  E-value=5.5e-14  Score=150.78  Aligned_cols=168  Identities=14%  Similarity=0.123  Sum_probs=104.1

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCCCCCeE---eCC----------cc------c------CC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAPTR---LPP----------DF------Y------PD   57 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~----~~~~~~~~~---~~~----------~~------~------~~   57 (670)
                      ...++.++|+++|+.++|||||+.+|.+......    ..+..-...   ...          .+      .      ..
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            3567889999999999999999999965321110    011000000   000          00      0      01


Q ss_pred             ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~  136 (670)
                      ...+.+|||||+++|.......+..+|++++|+|++++. ..+...  .+..++... ..|+++|+||+|+.+.......
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~~~~  160 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERALEN  160 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhHHHH
Confidence            367999999999887666666667789999999998643 222111  222333331 3479999999999764322011


Q ss_pred             hhhhhHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          137 EEVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       137 ~~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      .+.+..+.+.. ....+++++||++|.|++++++.+...+..
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            12223333221 112479999999999999999998876543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.54  E-value=9.9e-14  Score=134.71  Aligned_cols=121  Identities=22%  Similarity=0.310  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc-cEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC-DVTIF  503 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a-d~vll  503 (670)
                      +|+++|++|||||||+++|.++.+.....++ ...........++....+.+||++|+.+++..  ...+++.+ +++|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~--~~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDK--LLETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHH--HHHHHhccCCEEEE
Confidence            6899999999999999999998776554332 22232222222234567889999999988776  67788888 99999


Q ss_pred             EEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908          504 VYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (670)
Q Consensus       504 v~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~  548 (670)
                      |+|+++. .++.....++..+.........++|+++|+||+|+...
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9999987 67777777766554322111116999999999998763

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.54  E-value=1e-13  Score=134.07  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=100.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCC--CCeEeCCccc-CCceeEEEEeCCCCccchhhhHH-----Hhcc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVH--APTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNE-----ELKR   82 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~   82 (670)
                      ++||+++|++|||||||+|+|++..+... ..++.  ..+.....+. .....+.+|||||..........     .+.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            47999999999999999999998664332 11111  1111111111 12346899999998653332222     3677


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhc----
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFR----  148 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~----  148 (670)
                      +|++++|.+  +  ++......|++.++..  ++|+++|+||+|+......          ....+..+.+...++    
T Consensus        81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            899999854  2  2344444588888876  7899999999998542110          001111112222221    


Q ss_pred             cCCeEEEeCcc--cCCCchHHHHHHHHHHcC
Q 005908          149 EIETCVECSAT--TMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       149 ~~~~~~~~SA~--~~~gi~~l~~~i~~~~~~  177 (670)
                      ...++|.+|+.  .+.|+..+.+.++..+..
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            22479999999  679999999988887653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.53  E-value=2.1e-13  Score=152.48  Aligned_cols=155  Identities=15%  Similarity=0.115  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC---CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFS---ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~---~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      -|+++|.+++|||||+++|.+....   ......++.+.....+..+ ....+.+||++|++.|...  ....+..+|++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~--m~~g~~~~D~~   78 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSN--MLAGVGGIDHA   78 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHH--HHHHhhcCCEE
Confidence            5899999999999999999974322   1211122222333344455 2345778999999888665  67778999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc---HHHHHHHHHHhCC--CCcEEeecccC
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI--EPPIPVSMKSK  575 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~---~~~~~~~~~~~~~--~~~~~vSA~~g  575 (670)
                      ++|+|++++.. ....+.+..+...      ++| +++|+||+|+.++...   .+++.++....++  .+++++||++|
T Consensus        79 lLVVda~eg~~-~qT~ehl~il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG  151 (614)
T PRK10512         79 LLVVACDDGVM-AQTREHLAILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG  151 (614)
T ss_pred             EEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence            99999998633 2223333333322      455 5799999999863322   3344455554453  46999999999


Q ss_pred             -ChHHHHHHHHHHHh
Q 005908          576 -DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 -~v~~l~~~l~~~~~  589 (670)
                       |++++++.|.+...
T Consensus       152 ~gI~~L~~~L~~~~~  166 (614)
T PRK10512        152 RGIDALREHLLQLPE  166 (614)
T ss_pred             CCCHHHHHHHHHhhc
Confidence             99999999987654

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.52  E-value=6.3e-14  Score=160.43  Aligned_cols=231  Identities=13%  Similarity=0.052  Sum_probs=138.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCC-----CCCC--C---------CCCe--EeCCcccCCceeEEEEeCCCCccc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-----KVPP--V---------HAPT--RLPPDFYPDRVPVTIIDTSSSLEN   72 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-----~~~~--~---------~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~   72 (670)
                      +--+|+|+|++|+|||||+++|+...-..     ...+  +         .+.+  .....+.+++..+.+|||||+.++
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            34589999999999999999997432111     0110  0         0011  122334457889999999999988


Q ss_pred             hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC--
Q 005908           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--  150 (670)
Q Consensus        73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--  150 (670)
                      ...+..+++.+|++++|+|+++.......  .++..++..  ++|+++|+||+|+....    .....+.+...++..  
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~~----~~~~~~~i~~~l~~~~~  160 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGAN----FLRVVNQIKQRLGANAV  160 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCce
Confidence            88888999999999999999886555443  355566665  79999999999998642    334455665655432  


Q ss_pred             CeEEEeCcccCCCchHHHHHHHHHHc-CCCCCCCccccccc-------cHHHHHHH-HHHHHHhCCCCC-----CCCChH
Q 005908          151 ETCVECSATTMIQVPDVFYYAQKAVL-HPTAPLFDHDEQTL-------KPRCVRAL-KRIFIICDHDMD-----GALNDA  216 (670)
Q Consensus       151 ~~~~~~SA~~~~gi~~l~~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~l-~ri~~~~d~~~~-----~~l~~~  216 (670)
                      ...+++||.++  +..+++.+..... .+............       ..+.+..| +.+....|..++     ..++.+
T Consensus       161 ~~~ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~  238 (689)
T TIGR00484       161 PIQLPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIE  238 (689)
T ss_pred             eEEeccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence            23688898877  3332222221111 11100000000111       11122222 333333332222     234445


Q ss_pred             HHHHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCCcc
Q 005908          217 ELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVN  251 (670)
Q Consensus       217 el~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~~~  251 (670)
                      ++...-..          +++++....++..|++.+.+++|+|.+
T Consensus       239 ~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~  283 (689)
T TIGR00484       239 EIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTD  283 (689)
T ss_pred             HHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchh
Confidence            54322211          478888999999999999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.52  E-value=8.6e-14  Score=123.64  Aligned_cols=136  Identities=21%  Similarity=0.263  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc----cchhhhHHHhccCCEEEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----ENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----~~~~~~~~~~~~ad~ii~v   89 (670)
                      ||+++|+.|+|||||+++|.+.......+.       .+.+     .=.++||||-.    .+...+-....+||++++|
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq-------~i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll   70 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQ-------AIEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL   70 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccc-------eeEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence            799999999999999999988664322111       1111     12459999942    1222233556789999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      .|.+++.+.-.-.  +.   +.+  ++|+|-|+||+|+.....  .. +..+++.+.-|. ..+|++|+.+|+||++|.+
T Consensus        71 ~dat~~~~~~pP~--fa---~~f--~~pvIGVITK~Dl~~~~~--~i-~~a~~~L~~aG~-~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   71 QDATEPRSVFPPG--FA---SMF--NKPVIGVITKIDLPSDDA--NI-ERAKKWLKNAGV-KEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             ecCCCCCccCCch--hh---ccc--CCCEEEEEECccCccchh--hH-HHHHHHHHHcCC-CCeEEEECCCCcCHHHHHH
Confidence            9999875422211  11   112  689999999999983221  12 334455555553 4689999999999999998


Q ss_pred             HHH
Q 005908          170 YAQ  172 (670)
Q Consensus       170 ~i~  172 (670)
                      ++.
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.51  E-value=2.3e-13  Score=133.65  Aligned_cols=151  Identities=21%  Similarity=0.255  Sum_probs=100.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCC------------cccce---------E-----------------EEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPT------------TGEQY---------A-----------------VNVVD  466 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t------------~~~~~---------~-----------------~~~vd  466 (670)
                      ||+++|..++|||||+++|..+.+.......            .+...         .                 ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999976654321100            00000         0                 01111


Q ss_pred             cCCCceEEEEEecCChhhHhhhhchHhhc--ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 005908          467 QPGGNKKTLILQEIPEEGVKKILSNKEAL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD  544 (670)
Q Consensus       467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~--~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~D  544 (670)
                      .  ....+.++|++|++.+...  ....+  ..+|++++|+|++.+.. .....++..+...      ++|+++|+||+|
T Consensus        81 ~--~~~~i~liDtpG~~~~~~~--~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~------~ip~ivvvNK~D  149 (224)
T cd04165          81 K--SSKLVTFIDLAGHERYLKT--TLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL------NIPVFVVVTKID  149 (224)
T ss_pred             e--CCcEEEEEECCCcHHHHHH--HHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEECcc
Confidence            1  2346678999999887654  34444  37999999999988754 3344555555544      799999999999


Q ss_pred             CCCCcccHHHHHHHHHHhC----------------------------CCCcEEeecccC-ChHHHHHHHHH
Q 005908          545 LKPYTMAVQDSARVTQELG----------------------------IEPPIPVSMKSK-DLNNVFSRIIW  586 (670)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~----------------------------~~~~~~vSA~~g-~v~~l~~~l~~  586 (670)
                      +.++.......+++.+.+.                            ..|++.+||.+| |+++|.+.|..
T Consensus       150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            9764444444444443332                            337999999999 99999987754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.51  E-value=7.4e-14  Score=137.45  Aligned_cols=149  Identities=17%  Similarity=0.098  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC--------------------------CCC---CCCCeE--eCCcccCCceeEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VPP---VHAPTR--LPPDFYPDRVPVT   62 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~--------------------------~~~---~~~~~~--~~~~~~~~~~~~~   62 (670)
                      +|+++|+.++|||||+.+|+...-...                          ...   ..+.+.  ....+...+.++.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999964321000                          000   000111  2233446788999


Q ss_pred             EEeCCCCccchhhhHHHhccCCEEEEEEECCChhh-----H-HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC--Ccc
Q 005908           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQST-----L-SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--NAT  134 (670)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s-----~-~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~  134 (670)
                      +|||||+.++...+...++.+|++|+|+|+++...     . ..... ........ ..+|+++|+||+|+....  .. 
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~-  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLARTL-GVKQLIVAVNKMDDVTVNWSEE-  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHHHc-CCCeEEEEEEccccccccccHH-
Confidence            99999988777767777889999999999987421     1 11111 22233333 247899999999997421  11 


Q ss_pred             chhh---hhhHHHHHhcc---CCeEEEeCcccCCCch
Q 005908          135 SLEE---VMGPIMQQFRE---IETCVECSATTMIQVP  165 (670)
Q Consensus       135 ~~~~---~~~~~~~~~~~---~~~~~~~SA~~~~gi~  165 (670)
                      ...+   .+..+...++.   ..++++|||++|.||+
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1222   22223334331   1369999999999997

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12736 elongation factor Tu; Reviewed

Probab=99.51  E-value=2.2e-13  Score=145.76  Aligned_cols=164  Identities=14%  Similarity=0.170  Sum_probs=107.5

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------C------CCCCCCCeEeCCcccCCceeEEEEeCCCCc
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-----------K------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   70 (670)
                      ..++.++|+++|+.++|||||+++|++.....           +      ..++.. ......+..++..+.++||||++
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~-~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITI-NTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccE-EEEeeEecCCCcEEEEEECCCHH
Confidence            46778999999999999999999998631100           0      111110 11223344566789999999998


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCcc-chhhhhhHHHHHhc
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFR  148 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~  148 (670)
                      +|.......+..+|++++|+|++....-...  .++..+...  ++| +|+++||+|+.+..... ...+.+..+...++
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            8877777778899999999998864332222  245556555  678 67899999987432220 11223444444443


Q ss_pred             c---CCeEEEeCcccCC--------CchHHHHHHHHHHc
Q 005908          149 E---IETCVECSATTMI--------QVPDVFYYAQKAVL  176 (670)
Q Consensus       149 ~---~~~~~~~SA~~~~--------gi~~l~~~i~~~~~  176 (670)
                      .   ..+++++||++|.        ++.++++.+.+.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            2   2479999999983        46677776666544

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.50  E-value=1.4e-13  Score=149.22  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP  468 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-------------------------------~~t~~~~~~~~~vd~~  468 (670)
                      .+..++|+++|.+|+|||||+++|+........                               ...++.+.....+.. 
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence            356699999999999999999999854332211                               011111222233333 


Q ss_pred             CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccH-HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW-KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~-~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                       +...+.+||++|++.+...  ....+..+|++++|+|+++...+ .....++..+... .    ..|+++|+||+|+.+
T Consensus        82 -~~~~i~liDtpG~~~~~~~--~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~----~~~iivviNK~Dl~~  153 (425)
T PRK12317         82 -DKYYFTIVDCPGHRDFVKN--MITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G----INQLIVAINKMDAVN  153 (425)
T ss_pred             -CCeEEEEEECCCcccchhh--HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C----CCeEEEEEEcccccc
Confidence             4467888999998776553  45567899999999999972122 1122222223222 1    246999999999975


Q ss_pred             Ccc-----cHHHHHHHHHHhCC----CCcEEeecccC-ChHHH
Q 005908          548 YTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       548 ~~~-----~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l  580 (670)
                      ...     ..+++.++.+..++    .+++++||++| |++++
T Consensus       154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence            221     13455566666665    36899999999 99873

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=4.4e-13  Score=114.46  Aligned_cols=156  Identities=22%  Similarity=0.243  Sum_probs=120.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .++++|+.+|-.++||||++..|.-+....+ .||++  +.+..+...  ..++.+||..|++..+.+  +.+|+....+
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvG--FnvetVtyk--N~kfNvwdvGGqd~iRpl--WrhYy~gtqg   87 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPL--WRHYYTGTQG   87 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCccc-ccccc--eeEEEEEee--eeEEeeeeccCchhhhHH--HHhhccCCce
Confidence            3579999999999999999999987654332 24544  677777664  467888999999999999  9999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~  573 (670)
                      +|||+|+.+++..++.+..+..+.......  +.|+++.+||-|+..... .+++   .+.+.+.       .+.++||.
T Consensus        88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~--~~~~LvlANkQDlp~A~~-pqei---~d~leLe~~r~~~W~vqp~~a~  161 (180)
T KOG0071|consen   88 LIFVVDSADRDRIEEARNELHRIINDREMR--DAIILILANKQDLPDAMK-PQEI---QDKLELERIRDRNWYVQPSCAL  161 (180)
T ss_pred             EEEEEeccchhhHHHHHHHHHHHhCCHhhh--cceEEEEecCcccccccC-HHHH---HHHhccccccCCccEeeccccc
Confidence            999999999888777777766665544433  689999999999987332 2222   2222221       26799999


Q ss_pred             cC-ChHHHHHHHHHHHh
Q 005908          574 SK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~  589 (670)
                      +| |+.+=|.++...+.
T Consensus       162 ~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  162 SGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cchhHHHHHHHHHhhcc
Confidence            99 99999999887654

>PRK12735 elongation factor Tu; Reviewed

Probab=99.49  E-value=3.4e-13  Score=144.40  Aligned_cols=153  Identities=16%  Similarity=0.165  Sum_probs=99.1

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCC-------CCC----CCCC---CCCCeE--eCCcccCCceeEEEEeCCCCc
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE----KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSL   70 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~~----~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~   70 (670)
                      ...++.++|+++|++++|||||+++|++..       +..    +..+   ..+.+.  ....+..++..+.++||||+.
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            345788999999999999999999998621       100    0000   001111  122344556789999999998


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFR  148 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~  148 (670)
                      +|.......+..+|++++|+|+.+.......  .++..+...  ++|.+ +++||+|+.+.... ......+..+...++
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            8877777888899999999998875332221  244555554  68865 57999999743211 012223444555543


Q ss_pred             c---CCeEEEeCcccCCC
Q 005908          149 E---IETCVECSATTMIQ  163 (670)
Q Consensus       149 ~---~~~~~~~SA~~~~g  163 (670)
                      .   ..+++++||++|.|
T Consensus       163 ~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        163 FPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCcCceeEEecchhcccc
Confidence            2   24799999999964

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.49  E-value=3.4e-13  Score=131.68  Aligned_cols=160  Identities=21%  Similarity=0.200  Sum_probs=110.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh-----hchHhhccc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALAS  497 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~  497 (670)
                      ...|.+||-||+|||||+|++...+......+.|+..-.+-++..+ ....+.+-|.+|.-+-..+     ......+..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd-df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD-DFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc-ccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            4568999999999999999999877655444433322222233333 2233444555552111111     113567789


Q ss_pred             ccEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       498 ad~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      |+.+++|+|.+.+   ..++.+.....++..+...- .++|.++|+||+|+.+.+  ...+.++++.+.-+.++++||++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L-~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL-ADRPALIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh-ccCceEEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999988   77788887777777665432 268999999999996422  23357888888876799999999


Q ss_pred             C-ChHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIW  586 (670)
Q Consensus       575 g-~v~~l~~~l~~  586 (670)
                      + |+.++++.|.+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9 99999988765

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.49  E-value=9.7e-14  Score=152.30  Aligned_cols=230  Identities=12%  Similarity=0.060  Sum_probs=130.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----------C-C---------C--CeEeCCcccCCceeEEEEeCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP----------V-H---------A--PTRLPPDFYPDRVPVTIIDTS   67 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~----------~-~---------~--~~~~~~~~~~~~~~~~i~Dt~   67 (670)
                      .+.-+|+|+|++|+|||||+++|+...-.....+          + .         +  .......+.++++.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3556899999999999999999974221111000          0 0         0  000112345678899999999


Q ss_pred             CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh
Q 005908           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (670)
Q Consensus        68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  147 (670)
                      |+.+|......+++.+|++|+|+|+++.....  ...++...+..  ++|+++++||+|+....    ..+.+..+...+
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~iPiiv~iNK~D~~~a~----~~~~l~~i~~~l  159 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ--TRKLMEVCRLR--DTPIFTFINKLDRDGRE----PLELLDEIEEVL  159 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH--HHHHHHHHHhc--CCCEEEEEECCcccccC----HHHHHHHHHHHh
Confidence            99998888888999999999999998754322  22355666555  89999999999987543    234455565666


Q ss_pred             ccCCeEEEeCcccCCCchHHHHHHHHHHcCCCCC------C----CccccccccH-----HHHHHHHHHHHHhCCCCCCC
Q 005908          148 REIETCVECSATTMIQVPDVFYYAQKAVLHPTAP------L----FDHDEQTLKP-----RCVRALKRIFIICDHDMDGA  212 (670)
Q Consensus       148 ~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~~~------~----~~~~~~~~~~-----~~~~~l~ri~~~~d~~~~~~  212 (670)
                      +...-.+....-.|.++..+++.+...+......      .    ...+. .+.+     +....+.....+.+..    
T Consensus       160 ~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd-~lle~~l~~~~~~~l~~~lel~~~~----  234 (526)
T PRK00741        160 GIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDN-PELDELLGEDLAEQLREELELVQGA----  234 (526)
T ss_pred             CCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCH-HHHHHHhcccHHHHHHHHHHhhhhc----
Confidence            5322223333333433333333222222111000      0    00000 0000     0001111111111111    


Q ss_pred             CChHHHHHHhhh-----hcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908          213 LNDAELNEFQVK-----CFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (670)
Q Consensus       213 l~~~el~~~q~~-----~~~~~l~~~~~~~l~~~l~~~~~~~~~~  252 (670)
                      +.+-.....+..     +|++++...+++.+++.+.+++|+|.+.
T Consensus       235 ~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~  279 (526)
T PRK00741        235 SNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPR  279 (526)
T ss_pred             ccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcc
Confidence            111111122222     7999999999999999999999998654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.48  E-value=5.4e-13  Score=129.12  Aligned_cols=157  Identities=17%  Similarity=0.171  Sum_probs=96.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcc---cceEEEEEEcCCCceEEEEEecCChhhHhh----hhchHhhc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG---EQYAVNVVDQPGGNKKTLILQEIPEEGVKK----ILSNKEAL  495 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~---~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----~~~~~~~~  495 (670)
                      ++||+|+|++|||||||+|+|++.........+++   .......+..+ ....+.+||++|......    .. ....+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l-~~~~~   78 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYL-EEMKF   78 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHH-HHhCc
Confidence            37999999999999999999999665432222221   01111122222 233567899998632111    10 22336


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc------------cHHHHHHHH----
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------AVQDSARVT----  559 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~----  559 (670)
                      .++|++++|.|.  +.+ +....+++.+...      +.|+++|+||+|+.....            ..++.++.+    
T Consensus        79 ~~~d~~l~v~~~--~~~-~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  149 (197)
T cd04104          79 SEYDFFIIISST--RFS-SNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL  149 (197)
T ss_pred             cCcCEEEEEeCC--CCC-HHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence            789999998542  222 3344566666654      589999999999853211            111222222    


Q ss_pred             HH--hCCCCcEEeecc--cC-ChHHHHHHHHHHHhC
Q 005908          560 QE--LGIEPPIPVSMK--SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       560 ~~--~~~~~~~~vSA~--~g-~v~~l~~~l~~~~~~  590 (670)
                      +.  ...+++|.+|+.  .+ |+..+.+.|+..+..
T Consensus       150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            22  224579999998  57 999999999998874

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.48  E-value=6.5e-13  Score=131.74  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCCc-----------ccceEEEEEEcCCCceEEEEEecCChhhHhhh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENY-----APTT-----------GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~-----~~t~-----------~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~  488 (670)
                      +|+++|.+|+|||||+++|+........     ..++           +..+.........+..++.+||++|+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999999864322111     1111           11122223333334567889999999887765


Q ss_pred             hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                        +..+++.+|++++|+|++++... ....++..+...      ++|+++++||+|+..
T Consensus        81 --~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~  130 (237)
T cd04168          81 --VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAG  130 (237)
T ss_pred             --HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccC
Confidence              67889999999999999988653 345555555543      699999999999875

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.48  E-value=2.1e-13  Score=143.27  Aligned_cols=191  Identities=20%  Similarity=0.244  Sum_probs=131.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+..+||+++|+.||||||||-+++..++...-++- -..+.+-.--+| ...-..++|+...+..+..  ....+++||
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~r-l~~i~IPadvtP-e~vpt~ivD~ss~~~~~~~--l~~EirkA~   81 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRR-LPRILIPADVTP-ENVPTSIVDTSSDSDDRLC--LRKEIRKAD   81 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhcccccccc-CCccccCCccCc-CcCceEEEecccccchhHH--HHHHHhhcC
Confidence            356799999999999999999999999987654321 111111111122 3333556777544332222  367789999


Q ss_pred             EEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHhC-CCCcEEeecccC
Q 005908          500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELG-IEPPIPVSMKSK  575 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~-~~~~~~vSA~~g  575 (670)
                      ++.++|+++++.+.+.+. .|+-.+.+...+. -++|||+||||+|.......  .....-+..++. +...+++||++-
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~-~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~  160 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDY-HETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTL  160 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccCCC-ccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence            999999999999988875 7888887765332 26999999999999875444  222333444333 235699999999


Q ss_pred             -ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhh
Q 005908          576 -DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSL  615 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (670)
                       |+.++|....+.+..|....-.......+.+...++.|++
T Consensus       161 ~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIF  201 (625)
T KOG1707|consen  161 ANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIF  201 (625)
T ss_pred             hhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHH
Confidence             9999999999998877766544444444555555655544

>PRK00007 elongation factor G; Reviewed

Probab=99.48  E-value=1.1e-13  Score=158.26  Aligned_cols=234  Identities=14%  Similarity=0.102  Sum_probs=142.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCC--CCC---C---------CCCCeE--eCCcccCCceeEEEEeCCCCccc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPE--KVP---P---------VHAPTR--LPPDFYPDRVPVTIIDTSSSLEN   72 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~--~~~---~---------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~   72 (670)
                      +-.+|+|+|++|+|||||+++|+...  ...  ...   .         ..+.+.  ....+.+.+..++++||||+.+|
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            34589999999999999999997421  100  000   0         000111  12234456889999999999888


Q ss_pred             hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC--
Q 005908           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--  150 (670)
Q Consensus        73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--  150 (670)
                      .......++.+|++|+|+|+......+..  ..+..+.+.  ++|+|+++||+|+....    .....+.+...++..  
T Consensus        89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~----~~~~~~~i~~~l~~~~~  160 (693)
T PRK00007         89 TIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD----FYRVVEQIKDRLGANPV  160 (693)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCee
Confidence            77778899999999999998766444443  356666666  78999999999988642    345566666666642  


Q ss_pred             CeEEEeCcccC-CCchHHHHHHHHHHc-CCCCCCCcccc--ccccHH---HHHHH-HHHHHHhCCCCC-----CCCChHH
Q 005908          151 ETCVECSATTM-IQVPDVFYYAQKAVL-HPTAPLFDHDE--QTLKPR---CVRAL-KRIFIICDHDMD-----GALNDAE  217 (670)
Q Consensus       151 ~~~~~~SA~~~-~gi~~l~~~i~~~~~-~~~~~~~~~~~--~~~~~~---~~~~l-~ri~~~~d~~~~-----~~l~~~e  217 (670)
                      ...+++||..+ .|+-+++........ ......+....  ....+.   .+..| +.+....|..++     ..++.++
T Consensus       161 ~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~  240 (693)
T PRK00007        161 PIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEE  240 (693)
T ss_pred             eEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHH
Confidence            34688999887 556555542221110 00000000000  001111   11111 333222222222     3444555


Q ss_pred             HHHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908          218 LNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (670)
Q Consensus       218 l~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~~~~  252 (670)
                      +...-++          +|++++...+++.|++.+.+++|+|.+.
T Consensus       241 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~  285 (693)
T PRK00007        241 IKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV  285 (693)
T ss_pred             HHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhc
Confidence            4443221          5788999999999999999999998653

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.48  E-value=1.5e-12  Score=128.53  Aligned_cols=168  Identities=21%  Similarity=0.218  Sum_probs=121.3

Q ss_pred             HhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh-----hhHhhh-
Q 005908          415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKI-  488 (670)
Q Consensus       415 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----~~~~~~-  488 (670)
                      +........+.|+|.|.||||||||++++.+.+....+.|-|+..+.+-.++.++  ..++++||+|-     ++.+.+ 
T Consensus       160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE  237 (346)
T COG1084         160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIE  237 (346)
T ss_pred             cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHH
Confidence            3444556779999999999999999999999998888778777777777776653  34566888882     122221 


Q ss_pred             hchHhhccc-ccEEEEEEECCC--cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC
Q 005908          489 LSNKEALAS-CDVTIFVYDSSD--EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE  565 (670)
Q Consensus       489 ~~~~~~~~~-ad~vllv~D~s~--~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  565 (670)
                      .++..+++. .++|+|+||.+.  +.+.+...+.+.++....     ..|+++|.||+|........+.... ...-+..
T Consensus       238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~  311 (346)
T COG1084         238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGE  311 (346)
T ss_pred             HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccchhHHHHHHHH-HHhhccc
Confidence            113334433 688999999985  567788888888888775     5899999999999864433333333 3344444


Q ss_pred             CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          566 PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       566 ~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ....+|+..+ +++.+.+.+...+..
T Consensus       312 ~~~~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         312 EPLKISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             cccceeeeehhhHHHHHHHHHHHhhc
Confidence            4689999999 999999888887654

>cd01858 NGP_1 NGP-1

Probab=99.48  E-value=1.3e-12  Score=121.74  Aligned_cols=88  Identities=9%  Similarity=0.032  Sum_probs=57.3

Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      ..++++|++++|+|++++.....  ..+.+.+.....++|+++|.||+|+.+...   ....+..+.+.+..  ..+.+|
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~---~~~~~~~~~~~~~~--~~~~iS   76 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV---TARWVKILSKEYPT--IAFHAS   76 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH---HHHHHHHHhcCCcE--EEEEee
Confidence            56789999999999988743221  135555554444699999999999964321   12222333332221  257899


Q ss_pred             cccCCCchHHHHHHH
Q 005908          158 ATTMIQVPDVFYYAQ  172 (670)
Q Consensus       158 A~~~~gi~~l~~~i~  172 (670)
                      |+++.|++++++.+.
T Consensus        77 a~~~~~~~~L~~~l~   91 (157)
T cd01858          77 INNPFGKGSLIQLLR   91 (157)
T ss_pred             ccccccHHHHHHHHH
Confidence            999999988777553

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.48  E-value=9.2e-13  Score=128.71  Aligned_cols=111  Identities=13%  Similarity=0.200  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCC----------------CCeEeCCccc--------CCceeEEEEeCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVH----------------APTRLPPDFY--------PDRVPVTIIDTS   67 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~----------------~~~~~~~~~~--------~~~~~~~i~Dt~   67 (670)
                      +|+|+|+.++|||||+.+|+...-  .....+..                ....+...+.        ..++.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            699999999999999999985431  11110000                0000111222        237889999999


Q ss_pred             CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                      |+.+|......+++.+|++++|+|+++..+.+...  .+......  ++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~~--~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALKE--RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCcc
Confidence            99999999999999999999999999876665432  44444443  68999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG2262 HflX GTPases [General function prediction only]

Probab=99.47  E-value=7.6e-13  Score=134.81  Aligned_cols=156  Identities=21%  Similarity=0.165  Sum_probs=111.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--hh------HHHh
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--KL------NEEL   80 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~------~~~~   80 (670)
                      .-..|+++|-+|+|||||+|+|++.. +..+ ...+.+.++....+. ++..+.+.||.|.-+.-.  +.      -...
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~-~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG-DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC-CCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            45689999999999999999999876 3333 444454544443443 367899999999753211  11      1446


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ..||+++.|+|++++...+.+.. -.+.+... ..++|+|+|.||+|+..+..      ....+....+   ..+.+||+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~------~~~~~~~~~~---~~v~iSA~  339 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEE------ILAELERGSP---NPVFISAK  339 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchh------hhhhhhhcCC---CeEEEEec
Confidence            77999999999999976666653 56666654 34799999999999875422      1122222222   48999999


Q ss_pred             cCCCchHHHHHHHHHHcC
Q 005908          160 TMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~  177 (670)
                      +|.|++.|.+.|...+..
T Consensus       340 ~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         340 TGEGLDLLRERIIELLSG  357 (411)
T ss_pred             cCcCHHHHHHHHHHHhhh
Confidence            999999999999887753

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.47  E-value=8.6e-13  Score=146.76  Aligned_cols=153  Identities=20%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC------CCc-----e-----EEEEEecCChhhH
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP------GGN-----K-----KTLILQEIPEEGV  485 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~------g~~-----~-----~~~i~d~~g~~~~  485 (670)
                      .++.|+|+|.+|+|||||+++|.+........+.++.......++.+      |..     .     .+.+||++|++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            34679999999999999999998775543333221111111111111      110     0     1578999999999


Q ss_pred             hhhhchHhhcccccEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc------------
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------  550 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~------------  550 (670)
                      ..+  +...+..+|++++|+|++++   .++..+    ..+...      ++|+++++||+|+...-.            
T Consensus        85 ~~~--~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~~------~vpiIvviNK~D~~~~~~~~~~~~~~e~~~  152 (586)
T PRK04004         85 TNL--RKRGGALADIAILVVDINEGFQPQTIEAI----NILKRR------KTPFVVAANKIDRIPGWKSTEDAPFLESIE  152 (586)
T ss_pred             HHH--HHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHHc------CCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence            887  66778899999999999984   333322    222222      699999999999853100            


Q ss_pred             -----cHH-------HHHHHHHHhC--------------CCCcEEeecccC-ChHHHHHHHHH
Q 005908          551 -----AVQ-------DSARVTQELG--------------IEPPIPVSMKSK-DLNNVFSRIIW  586 (670)
Q Consensus       551 -----~~~-------~~~~~~~~~~--------------~~~~~~vSA~~g-~v~~l~~~l~~  586 (670)
                           ...       +........+              ..+++++||++| |++++++.+..
T Consensus       153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                 000       0001111122              236899999999 99999988865

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.47  E-value=4.1e-13  Score=143.90  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCC-------CC-----C----C-CCCCCCCeEeCCcccCCceeEEE
Q 005908            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATES-------VP-----E----K-VPPVHAPTRLPPDFYPDRVPVTI   63 (670)
Q Consensus         1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~-----~----~-~~~~~~~~~~~~~~~~~~~~~~i   63 (670)
                      |++..=...++.++|+++|+.++|||||+++|++..       +.     .    . ..++.- ......+..++..+.+
T Consensus         1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti-~~~~~~~~~~~~~~~l   79 (394)
T TIGR00485         1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITI-NTAHVEYETENRHYAH   79 (394)
T ss_pred             CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcce-eeEEEEEcCCCEEEEE
Confidence            333333456788999999999999999999997431       00     0    0 111111 1122334456778999


Q ss_pred             EeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEeCCCCCCCCCc-cchhhhhh
Q 005908           64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMG  141 (670)
Q Consensus        64 ~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~-~~~~~~~~  141 (670)
                      |||||+++|.......+..+|++++|+|++........  ..+..+...  ++|.+ +|+||+|+.+.... ....+.+.
T Consensus        80 iDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~  155 (394)
T TIGR00485        80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVR  155 (394)
T ss_pred             EECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence            99999998877677777889999999999874332222  244445555  67765 68999998753221 01123345


Q ss_pred             HHHHHhcc---CCeEEEeCcccCC
Q 005908          142 PIMQQFRE---IETCVECSATTMI  162 (670)
Q Consensus       142 ~~~~~~~~---~~~~~~~SA~~~~  162 (670)
                      .+...++.   ..+++++||++|.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            55555542   1479999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04167 Snu114p Snu114p subfamily

Probab=99.47  E-value=5.5e-13  Score=130.84  Aligned_cols=155  Identities=17%  Similarity=0.180  Sum_probs=100.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------CC------cccceEEE--EE---EcCCCceEEEEEecCCh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYA-----------PT------TGEQYAVN--VV---DQPGGNKKTLILQEIPE  482 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----------~t------~~~~~~~~--~v---d~~g~~~~~~i~d~~g~  482 (670)
                      +|+|+|.+|+|||||+++|+.........           .+      .+..+...  .+   ...+....+.+||++|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            58999999999999999999765443210           00      00111111  11   11345577889999999


Q ss_pred             hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc------c------
Q 005908          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT------M------  550 (670)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~------~------  550 (670)
                      ..+...  ...++..+|++++|+|++++.++. ...++......      +.|+++|+||+|+...+      .      
T Consensus        82 ~~f~~~--~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~------~~p~iiviNK~D~~~~~~~l~~~~~~~~l~  152 (213)
T cd04167          82 VNFMDE--VAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILE------GLPIVLVINKIDRLILELKLPPNDAYFKLR  152 (213)
T ss_pred             cchHHH--HHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCEEEEEECcccCcccccCCHHHHHHHHH
Confidence            888665  677889999999999999887654 33444444332      68999999999986211      0      


Q ss_pred             -cHHHHHHHHHHhCC------CC----cEEeecccC-ChH--------HHHHHHHHHH
Q 005908          551 -AVQDSARVTQELGI------EP----PIPVSMKSK-DLN--------NVFSRIIWAA  588 (670)
Q Consensus       551 -~~~~~~~~~~~~~~------~~----~~~vSA~~g-~v~--------~l~~~l~~~~  588 (670)
                       ..+++..+++.++.      .|    +++.||+.+ +..        ++++.|.+.+
T Consensus       153 ~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         153 HIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence             12344444555543      22    788999998 765        5555555443

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK13351 elongation factor G; Reviewed

Probab=99.46  E-value=1.9e-13  Score=157.01  Aligned_cols=234  Identities=14%  Similarity=0.114  Sum_probs=138.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-----C-CC----------CCe--EeCCcccCCceeEEEEeCCCCcc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-----P-VH----------APT--RLPPDFYPDRVPVTIIDTSSSLE   71 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-----~-~~----------~~~--~~~~~~~~~~~~~~i~Dt~G~~~   71 (670)
                      ....+|+|+|+.|+|||||+++|+...-.....     + ..          +.+  .....+.+.++.+++|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            345799999999999999999998532110000     0 00          000  01123445688999999999999


Q ss_pred             chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC
Q 005908           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE  151 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (670)
                      +...+..+++.+|++++|+|+++........  .+..+...  ++|+++|+||+|+...    .....++.+...++...
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~----~~~~~~~~i~~~l~~~~  157 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA----DLFKVLEDIEERFGKRP  157 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCCCe
Confidence            8888999999999999999999877666543  44555555  7999999999998764    34566677777776532


Q ss_pred             eEEEeCcccCCCchHHHHHHHHHHcCCCC----CCCcc-c-cccccH---HHHHHH-HHHHHHhCCC-----CCCCCChH
Q 005908          152 TCVECSATTMIQVPDVFYYAQKAVLHPTA----PLFDH-D-EQTLKP---RCVRAL-KRIFIICDHD-----MDGALNDA  216 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~~----~~~~~-~-~~~~~~---~~~~~l-~ri~~~~d~~-----~~~~l~~~  216 (670)
                      ..+......+.++..+.+.+.........    ..... . ......   +++..| +.+....+..     .+..++.+
T Consensus       158 ~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~  237 (687)
T PRK13351        158 LPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAE  237 (687)
T ss_pred             EEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence            23333334443333222211111100000    00000 0 001111   111111 2211111111     13455666


Q ss_pred             HHHHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCCcc
Q 005908          217 ELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVN  251 (670)
Q Consensus       217 el~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~~~  251 (670)
                      ++...-+.          +|+++....+++.|++.+..++|+|.+
T Consensus       238 ~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~  282 (687)
T PRK13351        238 QLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLE  282 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhh
Confidence            65444332          678899999999999999999999864

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.46  E-value=4.7e-13  Score=130.74  Aligned_cols=154  Identities=16%  Similarity=0.220  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhh-------HHHhccCC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL-------NEELKRAD   84 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~ad   84 (670)
                      ..|.+||-||+|||||+|.|...+- +.+++-|+-.-.+....+.+...+.+-|.||..+...+-       -..++.++
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            4578999999999999999988762 222221111111221122233349999999987544332       26778899


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        85 ~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      ..+||+|++..   .-++.++. +..+++.+.   .+.|.++|+||+|+.+.     ....+.+++..+... .++++||
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~pvsA  349 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVVPVSA  349 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEEEeee
Confidence            99999999988   66777664 666665543   47999999999998632     223346777777642 5899999


Q ss_pred             ccCCCchHHHHHHHH
Q 005908          159 TTMIQVPDVFYYAQK  173 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~  173 (670)
                      ++++|+.++++.+..
T Consensus       350 ~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  350 KSGEGLEELLNGLRE  364 (366)
T ss_pred             ccccchHHHHHHHhh
Confidence            999999999987654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.46  E-value=1.9e-12  Score=138.60  Aligned_cols=161  Identities=16%  Similarity=0.139  Sum_probs=106.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCC------CC---C--C---CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NY---A--P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~------~~---~--~---t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      .+..++|+++|..++|||||+++|++.....      .+   +  +   ..+.......+.+..+...+.++|++|+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            3567999999999999999999998632100      00   0  0   1111122223333334556788999999877


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ  560 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~  560 (670)
                      ...  ....+..+|++++|+|++++.. ......+..+...      ++| +|+++||+|+.+.+..    .+++.++.+
T Consensus        89 ~~~--~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~  159 (394)
T PRK12736         89 VKN--MITGAAQMDGAILVVAATDGPM-PQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            654  5666788999999999988643 2233444444443      677 6788999999753322    235555666


Q ss_pred             HhCC----CCcEEeecccC---------ChHHHHHHHHHHHh
Q 005908          561 ELGI----EPPIPVSMKSK---------DLNNVFSRIIWAAE  589 (670)
Q Consensus       561 ~~~~----~~~~~vSA~~g---------~v~~l~~~l~~~~~  589 (670)
                      ..++    .|++++||++|         ++.++++.+.+.+.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            6665    37999999997         35777777777654

>CHL00071 tufA elongation factor Tu

Probab=99.46  E-value=6.9e-13  Score=142.63  Aligned_cols=154  Identities=15%  Similarity=0.153  Sum_probs=102.0

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--C----C-----C---CCCCeE--eCCcccCCceeEEEEeCCCCc
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--V----P-----P---VHAPTR--LPPDFYPDRVPVTIIDTSSSL   70 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~----~-----~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~   70 (670)
                      ...++.++|+++|++++|||||+++|++..-...  .    .     .   ..+.+.  ....+..++..+.++||||+.
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            3467789999999999999999999987421100  0    0     0   001111  112344566789999999998


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR  148 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~  148 (670)
                      +|...+...+..+|++++|+|+.....-...  ..+..+...  ++| +|++.||+|+.+.... ....+.+..+.+..+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            8877778888999999999998765332222  255556655  678 7789999999753221 012223444444443


Q ss_pred             c---CCeEEEeCcccCCCc
Q 005908          149 E---IETCVECSATTMIQV  164 (670)
Q Consensus       149 ~---~~~~~~~SA~~~~gi  164 (670)
                      .   ..+++++||.+|.|+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence            2   247999999999765

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.46  E-value=3.2e-13  Score=115.41  Aligned_cols=156  Identities=22%  Similarity=0.252  Sum_probs=123.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+.++||.++|-.|+|||||+..|.+......   |.+..+..+.+... +...+.+||..|+...+..  +..|+.+.|
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn~k~v~~~-g~f~LnvwDiGGqr~IRpy--WsNYyenvd   87 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFNTKKVEYD-GTFHLNVWDIGGQRGIRPY--WSNYYENVD   87 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcceEEEeec-CcEEEEEEecCCccccchh--hhhhhhccc
Confidence            46789999999999999999999998765433   44455777888888 6788899999999999988  999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeec
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM  572 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA  572 (670)
                      ++|+|+|.+|...|+++...+-++.....-.  ..|+.+..||-|+.-.    ..+++.+.++++.       .+-++||
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~--~vpvlIfankQdllta----a~~eeia~klnl~~lrdRswhIq~csa  161 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLEEEKLA--EVPVLIFANKQDLLTA----AKVEEIALKLNLAGLRDRSWHIQECSA  161 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhhhhhhh--ccceeehhhhhHHHhh----cchHHHHHhcchhhhhhceEEeeeCcc
Confidence            9999999999988888877777766544433  6999999999998762    3344455555442       4679999


Q ss_pred             ccC-ChHHHHHHHHHH
Q 005908          573 KSK-DLNNVFSRIIWA  587 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~  587 (670)
                      .++ |+..-.+++...
T Consensus       162 ls~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  162 LSLEGSTDGSDWVQSN  177 (185)
T ss_pred             ccccCccCcchhhhcC
Confidence            999 888877777654

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.46  E-value=1.1e-12  Score=140.87  Aligned_cols=163  Identities=17%  Similarity=0.151  Sum_probs=103.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CCcccceEEE------------EEEc----CC------CceEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVN------------VVDQ----PG------GNKKT  474 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----~t~~~~~~~~------------~vd~----~g------~~~~~  474 (670)
                      ..++|+++|.+++|||||+++|.+........     -|....+...            .+.+    .+      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46899999999999999999997642211100     0111110000            0001    00      13567


Q ss_pred             EEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---
Q 005908          475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---  551 (670)
Q Consensus       475 ~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---  551 (670)
                      .++|++|++.|...  +...+..+|++++|+|++++....+..+.+..+....     ..|+++|+||+|+.+....   
T Consensus        83 ~liDtPGh~~f~~~--~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-----i~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        83 SFVDAPGHETLMAT--MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-----IKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             EEEECCCHHHHHHH--HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-----CCeEEEEEEccccCCHHHHHHH
Confidence            88999999888765  6677788999999999997541122233333332221     2578999999999864322   


Q ss_pred             HHHHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          552 VQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       552 ~~~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      .+++.++.+...  -.+++++||++| |++++++.|...+..+
T Consensus       156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~  198 (406)
T TIGR03680       156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP  198 (406)
T ss_pred             HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence            233333333321  125999999999 9999999999876543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10218 GTP-binding protein; Provisional

Probab=99.46  E-value=1.7e-12  Score=144.20  Aligned_cols=161  Identities=13%  Similarity=0.136  Sum_probs=111.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC------------CCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER--PFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~------------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~  488 (670)
                      .-+|+|+|..++|||||+++|+..  .+....            ..+.+..+......+..+...+.+||++|+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            458999999999999999999973  222211            012233344444444445678889999999888876


Q ss_pred             hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHhCC--
Q 005908          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELGI--  564 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~--  564 (670)
                        +..+++.+|++++|+|++++... ....++..+...      ++|+++++||+|+......  .+++.++...++.  
T Consensus        85 --v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~  155 (607)
T PRK10218         85 --VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD  155 (607)
T ss_pred             --HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence              77899999999999999987543 334444444443      6899999999998753221  2333333322121  


Q ss_pred             ----CCcEEeecccC-C----------hHHHHHHHHHHHhCCC
Q 005908          565 ----EPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH  592 (670)
Q Consensus       565 ----~~~~~vSA~~g-~----------v~~l~~~l~~~~~~~~  592 (670)
                          .|++++||++| +          +..+++.|.+.++.|.
T Consensus       156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence                25999999999 6          6788999888887654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.46  E-value=6e-13  Score=144.37  Aligned_cols=152  Identities=14%  Similarity=0.099  Sum_probs=99.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCC------------------------CC-------CCcccceEEEEEEcC
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN------------------------YA-------PTTGEQYAVNVVDQP  468 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------------------------~~-------~t~~~~~~~~~vd~~  468 (670)
                      .+..++|+++|..++|||||+++|+.......                        .+       ..++.+.....+.. 
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence            35669999999999999999999985221110                        00       11112222333433 


Q ss_pred             CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                       +...+.+||++|++.|...  ....+..+|++++|+|++++.++.... .+...+.....    ..|+++|+||+|+.+
T Consensus        83 -~~~~i~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~----~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        83 -DKYEVTIVDCPGHRDFIKN--MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG----INQLIVAINKMDSVN  155 (426)
T ss_pred             -CCeEEEEEECCCHHHHHHH--HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC----CCeEEEEEEChhccC
Confidence             4467889999999887654  556778999999999999985432111 11111222221    357999999999974


Q ss_pred             Ccc-----cHHHHHHHHHHhCC----CCcEEeecccC-ChHH
Q 005908          548 YTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNN  579 (670)
Q Consensus       548 ~~~-----~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~  579 (670)
                      ...     ..++++++++..++    .+++++||++| |+.+
T Consensus       156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            211     14566667777764    35899999999 9986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>CHL00071 tufA elongation factor Tu

Probab=99.45  E-value=2.2e-12  Score=138.69  Aligned_cols=149  Identities=15%  Similarity=0.116  Sum_probs=98.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------CC--------CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY------AP--------TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------~~--------t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      .+..++|+++|.+++|||||+++|++.......      ..        ..+.........+..+...+.++|++|+..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            456699999999999999999999974221100      00        0111111111222224456778999998776


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ  560 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~  560 (670)
                      ...  ....+..+|++++|+|+..+.. ......+..+...      ++| +|+++||+|+.+....    .+++..+.+
T Consensus        89 ~~~--~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~  159 (409)
T CHL00071         89 VKN--MITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVRELLS  159 (409)
T ss_pred             HHH--HHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence            554  5677889999999999987644 3344444444443      688 7789999999864332    235556666


Q ss_pred             HhCC----CCcEEeecccC-Ch
Q 005908          561 ELGI----EPPIPVSMKSK-DL  577 (670)
Q Consensus       561 ~~~~----~~~~~vSA~~g-~v  577 (670)
                      ..++    .|++++||.+| |+
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        160 KYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HhCCCCCcceEEEcchhhcccc
Confidence            6654    46999999998 64

>PRK12735 elongation factor Tu; Reviewed

Probab=99.45  E-value=2.1e-12  Score=138.34  Aligned_cols=161  Identities=14%  Similarity=0.117  Sum_probs=104.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcC------CCC-CC--CCC-----CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFS-EN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~------~~~-~~--~~~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      .+..++|+++|.+++|||||+++|++.      ... ..  .+.     ..+............+...+.++|++|++.|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            456799999999999999999999962      110 00  000     0111111222222223456788999999877


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCCccc----HHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ  560 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~NK~Dl~~~~~~----~~~~~~~~~  560 (670)
                      ...  ....+..+|++++|+|+.++.. ....+.+..+...      ++|.+ +++||+|+.+....    ..++..+.+
T Consensus        89 ~~~--~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~  159 (396)
T PRK12735         89 VKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             HHH--HHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            654  5677789999999999998643 2333444444433      67865 57999999753222    235566666


Q ss_pred             HhCC----CCcEEeecccC-C----------hHHHHHHHHHHHh
Q 005908          561 ELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE  589 (670)
Q Consensus       561 ~~~~----~~~~~vSA~~g-~----------v~~l~~~l~~~~~  589 (670)
                      .+++    .+++++||++| |          +.+|++.|...+.
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            6654    36899999998 4          5677777777654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.45  E-value=1.6e-12  Score=144.55  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC--CCCCCCC------------CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLER--PFSENYA------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~--~~~~~~~------------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~  490 (670)
                      +|+|+|..++|||||+++|+..  .+.....            ...+..+......+.....++.+||++|+..|...  
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e--   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE--   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH--
Confidence            6999999999999999999863  2221110            01112222222222224578889999999888766  


Q ss_pred             hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc--cHHHHHHHHHHhCC----
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQELGI----  564 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~----  564 (670)
                      ...+++.+|++++|+|++++. ......++..+...      ++|+++|+||+|+...+.  ...++..+...++.    
T Consensus        81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~  153 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ  153 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence            678899999999999998864 35556666666654      799999999999875332  13333343332221    


Q ss_pred             --CCcEEeecccC-----------ChHHHHHHHHHHHhCCC
Q 005908          565 --EPPIPVSMKSK-----------DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       565 --~~~~~vSA~~g-----------~v~~l~~~l~~~~~~~~  592 (670)
                        .|++++||++|           |+..+|+.+.+.++.|.
T Consensus       154 l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       154 LDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             ccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence              25999999998           48899999999887664

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01859 MJ1464 MJ1464

Probab=99.45  E-value=1.7e-12  Score=120.84  Aligned_cols=91  Identities=15%  Similarity=0.038  Sum_probs=60.3

Q ss_pred             hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCe
Q 005908           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (670)
Q Consensus        73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (670)
                      ..+....++++|++|+|+|++++......  .+...+...  ++|+++|+||+|+.+...   . .....+....+  .+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~---~-~~~~~~~~~~~--~~   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEV---L-EKWKSIKESEG--IP   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHH---H-HHHHHHHHhCC--Cc
Confidence            34566778889999999999876443321  244444433  789999999999864211   1 11112222222  36


Q ss_pred             EEEeCcccCCCchHHHHHHHH
Q 005908          153 CVECSATTMIQVPDVFYYAQK  173 (670)
Q Consensus       153 ~~~~SA~~~~gi~~l~~~i~~  173 (670)
                      ++.+||++|.|++++++.+.+
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~   93 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKE   93 (156)
T ss_pred             EEEEEccccccHHHHHHHHHH
Confidence            899999999999988876544

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[])

Probab=99.44  E-value=5.5e-14  Score=109.97  Aligned_cols=70  Identities=47%  Similarity=0.877  Sum_probs=66.9

Q ss_pred             CCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCC-----ChHHHHHHhhhhhHHHHhcc
Q 005908          349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG-----DPAAALRVTRKRSVDRKKQQ  418 (670)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~-----~~~~~~~~~~~~~~~~~~~~  418 (670)
                      ||....|+.+++++++|+||++|||++|.+++++|+..++++|.|+||.+     ++.+|+.++++|+.++++++
T Consensus         1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~   75 (76)
T PF08355_consen    1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ   75 (76)
T ss_pred             CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence            89999999999999999999999999999999999999999999999999     89999999999999887654

The EF hand associated region is found in yeast, vertebrates and plants.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.44  E-value=6.5e-13  Score=128.09  Aligned_cols=169  Identities=20%  Similarity=0.207  Sum_probs=115.3

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CC-CCCCCeEeCCcccCCceeEEEEeCCCCcc-------chhh
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGK   75 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~   75 (670)
                      +....++++|.|+|.+|+|||||+|+|+.+...+.  .+ ++...+..  ....++..+.+|||||.++       +...
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~--~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~  110 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL--RLSYDGENLVLWDTPGLGDGKDKDAEHRQL  110 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH--HhhccccceEEecCCCcccchhhhHHHHHH
Confidence            44567889999999999999999999997553332  22 22112222  2223346799999999886       4444


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC--------Cc-----cchhhhhhH
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--------NA-----TSLEEVMGP  142 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--------~~-----~~~~~~~~~  142 (670)
                      ...++...|+++++.+..++.--.+.  +++..+....-+.|+++++|.+|....-        ..     ...++..+.
T Consensus       111 ~~d~l~~~DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~  188 (296)
T COG3596         111 YRDYLPKLDLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA  188 (296)
T ss_pred             HHHHhhhccEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence            56788999999999998887533332  3455554444469999999999976541        00     012223333


Q ss_pred             HHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          143 IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       143 ~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      +.+-+....|++..|...+.|++++...+++.+...
T Consensus       189 ~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         189 LGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            344444455889999999999999999999987643

>TIGR00503 prfC peptide chain release factor 3

Probab=99.44  E-value=1.1e-12  Score=144.00  Aligned_cols=131  Identities=13%  Similarity=0.121  Sum_probs=88.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCC----------CC---------C--eEeCCcccCCceeEEEEeCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV----------HA---------P--TRLPPDFYPDRVPVTIIDTS   67 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~----------~~---------~--~~~~~~~~~~~~~~~i~Dt~   67 (670)
                      .+..+|+|+|++++|||||+++|+... .......+          .+         .  ......+.++++.+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            456799999999999999999986422 11110000          00         0  00112345678999999999


Q ss_pred             CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh
Q 005908           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (670)
Q Consensus        68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  147 (670)
                      |+.+|......+++.+|++|+|+|+++..  +...+.++...+..  ++|+++++||+|+....    ..+....+...+
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~~--~~PiivviNKiD~~~~~----~~~ll~~i~~~l  160 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRLR--DTPIFTFMNKLDRDIRD----PLELLDEVENEL  160 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHhc--CCCEEEEEECccccCCC----HHHHHHHHHHHh
Confidence            99888887888999999999999988742  22223455655554  79999999999986532    233344444444


Q ss_pred             c
Q 005908          148 R  148 (670)
Q Consensus       148 ~  148 (670)
                      +
T Consensus       161 ~  161 (527)
T TIGR00503       161 K  161 (527)
T ss_pred             C
Confidence            4

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.43  E-value=1.8e-12  Score=127.35  Aligned_cols=153  Identities=16%  Similarity=0.187  Sum_probs=108.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-------hhHHHhcc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKR   82 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~   82 (670)
                      -..+|++||.|+||||||++.|++.+-... ++- ++...++..+..++..++++|+||.-+..+       ..-..++.
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~F-TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF-TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCc-eecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            457899999999999999999998773333 332 223336778888999999999999754322       23367899


Q ss_pred             CCEEEEEEECCChhh-HHHHHH----------------------------------------HHHHHHHhc---------
Q 005908           83 ADAVVLTYACNQQST-LSRLSS----------------------------------------YWLPELRRL---------  112 (670)
Q Consensus        83 ad~ii~v~d~~~~~s-~~~~~~----------------------------------------~~~~~l~~~---------  112 (670)
                      ||++++|+|+....+ .+.+..                                        .....++++         
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986554 222221                                        111112211         


Q ss_pred             ----------------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          113 ----------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       113 ----------------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                                      ..-+|.+.|.||+|+...       +....+.+..    ..+.+||+.+.|+++|.+.|.+.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCCCHHHHHHHHHHhh
Confidence                            013789999999998752       3334444444    589999999999999999999987

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.43  E-value=2.8e-12  Score=137.58  Aligned_cols=165  Identities=18%  Similarity=0.157  Sum_probs=102.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CCcccceEEE------------EEEcC------C----Cce
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVN------------VVDQP------G----GNK  472 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----~t~~~~~~~~------------~vd~~------g----~~~  472 (670)
                      .+..++|+++|..++|||||+.+|.+........     .|....+...            .+.+.      +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            3456999999999999999999997632111110     1111111000            00000      1    125


Q ss_pred             EEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-
Q 005908          473 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-  551 (670)
Q Consensus       473 ~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-  551 (670)
                      .+.+||++|++.+...  .......+|++++|+|++++.........+..+....     ..|+++|+||+|+.+.... 
T Consensus        86 ~i~liDtPG~~~f~~~--~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~-----i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         86 RVSFVDAPGHETLMAT--MLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG-----IKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             EEEEEECCCHHHHHHH--HHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEEeeccccchhHH
Confidence            6788999999887654  5566677899999999997631122222222332221     2478999999999864332 


Q ss_pred             --HHHHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          552 --VQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       552 --~~~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                        .+++.++.+...  ..+++++||++| |++++++.|.+.+..+
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~  203 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP  203 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence              233333433321  235899999999 9999999999876543

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.43  E-value=5.4e-12  Score=129.71  Aligned_cols=80  Identities=28%  Similarity=0.347  Sum_probs=53.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeE-----eCC-----------------ccc-CCceeEEEEeCCCC-
Q 005908           15 VVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR-----LPP-----------------DFY-PDRVPVTIIDTSSS-   69 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~-----~~~-----------------~~~-~~~~~~~i~Dt~G~-   69 (670)
                      |+|+|.||||||||+|+|++..... ++|.+.-...     ...                 ..+ ...+.+++|||||+ 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5899999999999999999887432 2332111111     100                 011 13478999999998 


Q ss_pred             ---ccchhhhHH---HhccCCEEEEEEECCC
Q 005908           70 ---LENKGKLNE---ELKRADAVVLTYACNQ   94 (670)
Q Consensus        70 ---~~~~~~~~~---~~~~ad~ii~v~d~~~   94 (670)
                         .++..+...   .+++||++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               334444444   5999999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01855 YqeH YqeH

Probab=99.43  E-value=2.2e-12  Score=124.21  Aligned_cols=93  Identities=17%  Similarity=0.128  Sum_probs=61.5

Q ss_pred             chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH-----HH
Q 005908           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQ  146 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~  146 (670)
                      +..++..+++.+|++++|+|+++....      |...+.....++|+++|+||+|+......   ......+.     ..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~   94 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKDKN---LVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCCCC---HHHHHHHHHHHHHhh
Confidence            467788899999999999999876421      22222222347899999999999753221   11122222     11


Q ss_pred             hc-cCCeEEEeCcccCCCchHHHHHHHH
Q 005908          147 FR-EIETCVECSATTMIQVPDVFYYAQK  173 (670)
Q Consensus       147 ~~-~~~~~~~~SA~~~~gi~~l~~~i~~  173 (670)
                      .+ ...+++++||++|.|++++++.+.+
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~  122 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKK  122 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHH
Confidence            11 1125899999999999998876543

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.43  E-value=2.7e-12  Score=126.86  Aligned_cols=160  Identities=22%  Similarity=0.249  Sum_probs=108.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccc----hhhhH----HHh
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----KGKLN----EEL   80 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----~~~~~----~~~   80 (670)
                      .....|+|.|.||||||||++.+++.+.... +|-++-. ..-+.+..+..+++++||||.-+-    ...++    .++
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~-i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKG-IHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccc-eeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            3567899999999999999999998874333 4432111 133456677789999999997421    11111    233


Q ss_pred             c-cCCEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           81 K-RADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        81 ~-~ad~ii~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      + -+++|+|+||.+..  -+.+... .++..++... +.|+++|.||+|..+....   ++ +......-+. .....++
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f-~~p~v~V~nK~D~~~~e~~---~~-~~~~~~~~~~-~~~~~~~  317 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELF-KAPIVVVINKIDIADEEKL---EE-IEASVLEEGG-EEPLKIS  317 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhc-CCCeEEEEecccccchhHH---HH-HHHHHHhhcc-cccccee
Confidence            3 36899999998754  5566655 4888887765 4999999999998765433   22 2222333332 2478899


Q ss_pred             cccCCCchHHHHHHHHHHcC
Q 005908          158 ATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~  177 (670)
                      +..+.+++.+-+.+.+....
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhc
Confidence            99999999888877776543

>PRK12739 elongation factor G; Reviewed

Probab=99.42  E-value=8e-13  Score=151.28  Aligned_cols=231  Identities=11%  Similarity=0.118  Sum_probs=136.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC-------CC------------CCCCCCCeEeCCcccCCceeEEEEeCCCCcc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVP-------EK------------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE   71 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   71 (670)
                      +-.+|+|+|++|+|||||+++|+...-.       ..            ..++. .......+.+++..+.++||||+.+
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgit-i~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGIT-ITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCC-ccceeEEEEECCEEEEEEcCCCHHH
Confidence            4567999999999999999999753110       00            00000 0001223445788999999999988


Q ss_pred             chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--
Q 005908           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--  149 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--  149 (670)
                      +...+..+++.+|++|+|+|+.+.......  .++..+...  ++|+|+++||+|+....    .......+...++.  
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~~----~~~~~~~i~~~l~~~~  157 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGAD----FFRSVEQIKDRLGANA  157 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCc
Confidence            888888999999999999998876443332  356666665  78999999999998642    34455566565543  


Q ss_pred             CCeEEEeCcccCCC-chHHHHHHHHHHcCCC--CCCCccc--cccccHHHHHH----HHHHHHHhCCCCCCC-----CCh
Q 005908          150 IETCVECSATTMIQ-VPDVFYYAQKAVLHPT--APLFDHD--EQTLKPRCVRA----LKRIFIICDHDMDGA-----LND  215 (670)
Q Consensus       150 ~~~~~~~SA~~~~g-i~~l~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~----l~ri~~~~d~~~~~~-----l~~  215 (670)
                      ....+++|+..+.+ +-++...... +....  ...+...  .....+...++    ++.+....+...+.+     +..
T Consensus       158 ~~~~iPis~~~~f~g~vd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~  236 (691)
T PRK12739        158 VPIQLPIGAEDDFKGVIDLIKMKAI-IWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITE  236 (691)
T ss_pred             eeEEecccccccceEEEEcchhhhh-hccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCH
Confidence            12457888887642 3233321111 11110  0000000  00011111112    222222222222222     334


Q ss_pred             HHHHHHhh----------hhcCCCCCHHHHHHHHHHHhhhcCCCcc
Q 005908          216 AELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVN  251 (670)
Q Consensus       216 ~el~~~q~----------~~~~~~l~~~~~~~l~~~l~~~~~~~~~  251 (670)
                      +++...-.          -+|++++...+++.+++.+.+++|+|.+
T Consensus       237 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~  282 (691)
T PRK12739        237 EEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLD  282 (691)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhh
Confidence            44333222          2678889999999999999999999865

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.42  E-value=1.7e-12  Score=114.33  Aligned_cols=105  Identities=24%  Similarity=0.348  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh---------hhHHHhcc
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEELKR   82 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~   82 (670)
                      +|+|+|.+|||||||+|+|++.+.  ....++..... ....+...+..+.++||||......         .....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK   79 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence            699999999999999999998653  22233332222 2223334667788999999864211         12244588


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK  124 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK  124 (670)
                      +|++++|+|.+++.. +... .++++++   .++|+++|.||
T Consensus        80 ~d~ii~vv~~~~~~~-~~~~-~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   80 SDLIIYVVDASNPIT-EDDK-NILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             ESEEEEEEETTSHSH-HHHH-HHHHHHH---TTSEEEEEEES
T ss_pred             CCEEEEEEECCCCCC-HHHH-HHHHHHh---cCCCEEEEEcC
Confidence            999999999877432 2222 3566664   38999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00049 elongation factor Tu; Reviewed

Probab=99.42  E-value=1.9e-12  Score=138.46  Aligned_cols=151  Identities=15%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCC---C-------------C-CCCCCCCeEeCCcccCCceeEEEEeCCCCc
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP---E-------------K-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~---~-------------~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   70 (670)
                      ..++.++|+++|+.++|||||+++|++....   .             . ..++... .....+..++..+.++||||+.
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~-~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN-TAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe-eeEEEEcCCCeEEEEEECCCHH
Confidence            4577899999999999999999999873100   0             0 1111000 0122344567789999999998


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFR  148 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~  148 (670)
                      +|.......+..+|++++|+|++....-..  ..++..+...  ++|++ +++||+|+.+.... ......+..+...++
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            887777788899999999999876533222  2355666665  68976 58999999742211 011223333444332


Q ss_pred             c---CCeEEEeCcccCCC
Q 005908          149 E---IETCVECSATTMIQ  163 (670)
Q Consensus       149 ~---~~~~~~~SA~~~~g  163 (670)
                      .   ..+++++||++|.+
T Consensus       163 ~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        163 FPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCccCCcEEEeecccccC
Confidence            1   24789999999763

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.41  E-value=1e-12  Score=122.42  Aligned_cols=118  Identities=20%  Similarity=0.291  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcc-cCCceeEEEEeCCCCccchhhhHH---HhccCCEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNE---ELKRADAVV   87 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~---~~~~ad~ii   87 (670)
                      .-.|+|+|++|+|||+|+.+|..+......+.......  ..+ ...+..+.++|+||+.+.......   +...+.+||
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            45699999999999999999999977665555422222  222 244667999999999987765444   488999999


Q ss_pred             EEEECCC-hhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCC
Q 005908           88 LTYACNQ-QSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDH  131 (670)
Q Consensus        88 ~v~d~~~-~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~  131 (670)
                      ||+|.+. .....++.++++..+...   ...+|++|++||.|+....
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            9999874 456777777777777442   3579999999999998654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.41  E-value=1e-11  Score=112.66  Aligned_cols=157  Identities=13%  Similarity=0.149  Sum_probs=113.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------CC--CcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY--------AP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~--------~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~  490 (670)
                      ..+.||+|.|+.++||||++.++.......+.        .+  +++.....-.+... +.....+++++||+++.-+  
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm--   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFM--   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHH--
Confidence            45689999999999999999999987643221        11  11211222222333 4456778999999999998  


Q ss_pred             hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC-CCCcEE
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIP  569 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~  569 (670)
                      +.-..++++++++++|.+.+..+ .....+..+....     .+|+++.+||.||..... .+.++++.+.-. -.|+++
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~~~~~~vi~  157 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-----PIPVVVAINKQDLFDALP-PEKIREALKLELLSVPVIE  157 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-----CCCEEEEeeccccCCCCC-HHHHHHHHHhccCCCceee
Confidence            88889999999999999999887 4555555554432     399999999999988443 444444444331 235999


Q ss_pred             eecccC-ChHHHHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~  587 (670)
                      ++|..+ +..+.++.+...
T Consensus       158 ~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         158 IDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eecccchhHHHHHHHHHhh
Confidence            999999 998888887765

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.41  E-value=3.8e-12  Score=123.20  Aligned_cols=167  Identities=18%  Similarity=0.113  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchh---hh--------HHH
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG---KL--------NEE   79 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~---~~--------~~~   79 (670)
                      ++|+++|.+|||||||+|+|++...........+.+.  ........+..+.++||||..+...   ..        ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999999874322110111111  1222334677899999999865421   11        123


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCC---CCCEEEEEeCCCCCCCCCccc----hhhhhhHHHHHhccCCe
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFREIET  152 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~  152 (670)
                      ..++|++|+|+++.+ .+-.+  ...++.+++...   -.++++|.|+.|.........    ....+..+.+.++..  
T Consensus        81 ~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r--  155 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR--  155 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe--
Confidence            467899999999876 33222  235555655321   368899999999765432101    124456666666643  


Q ss_pred             EEEeC-----cccCCCchHHHHHHHHHHcCCCCCCCc
Q 005908          153 CVECS-----ATTMIQVPDVFYYAQKAVLHPTAPLFD  184 (670)
Q Consensus       153 ~~~~S-----A~~~~gi~~l~~~i~~~~~~~~~~~~~  184 (670)
                      ++..+     +..+.++.+|++.+.+.+..+....|.
T Consensus       156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~  192 (196)
T cd01852         156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYT  192 (196)
T ss_pred             EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            33333     567889999999998888765554443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.41  E-value=1.7e-12  Score=139.27  Aligned_cols=151  Identities=17%  Similarity=0.069  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------CCCC----------C-----------CeEeCCcccCCce
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVH----------A-----------PTRLPPDFYPDRV   59 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~------------~~~~----------~-----------~~~~~~~~~~~~~   59 (670)
                      ++|+++|+.++|||||+++|+...-....            .+..          +           .......+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999754311100            1110          0           0001122335677


Q ss_pred             eEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh--
Q 005908           60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--  137 (670)
Q Consensus        60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~--  137 (670)
                      ++.|+||||+++|...+...+..+|++|+|+|+.....-+..  .....++... ..++++|+||+|+.+.... ..+  
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~~-~~~iivviNK~D~~~~~~~-~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLLG-IRHVVLAVNKMDLVDYDEE-VFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHcC-CCcEEEEEEecccccchHH-HHHHH
Confidence            899999999998877777889999999999998765332221  1233333332 3468999999999753221 111  


Q ss_pred             -hhhhHHHHHhcc-CCeEEEeCcccCCCchHH
Q 005908          138 -EVMGPIMQQFRE-IETCVECSATTMIQVPDV  167 (670)
Q Consensus       138 -~~~~~~~~~~~~-~~~~~~~SA~~~~gi~~l  167 (670)
                       +.+..+...++. ..+++++||++|.|+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence             222333344332 136999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.40  E-value=2.8e-12  Score=139.77  Aligned_cols=155  Identities=16%  Similarity=0.075  Sum_probs=98.5

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------CCCCC-------------------C--eEeCCccc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVHA-------------------P--TRLPPDFY   55 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~------------~~~~~-------------------~--~~~~~~~~   55 (670)
                      .+..++|+++|+.++|||||+++|+...-....            .+...                   .  ......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            467899999999999999999999865311100            11100                   0  00111233


Q ss_pred             CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccc
Q 005908           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS  135 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~  135 (670)
                      .++..+.|+||||+++|...+...+..+|++++|+|++....-....  ....+.... ..|+|+|+||+|+.+.... .
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~l~~~lg-~~~iIvvvNKiD~~~~~~~-~  179 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSFIATLLG-IKHLVVAVNKMDLVDYSEE-V  179 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHHHHHHhC-CCceEEEEEeeccccchhH-H
Confidence            55778999999999888766667789999999999987653221111  122233332 3578999999999753221 1


Q ss_pred             hhhhhh---HHHHHhc--cCCeEEEeCcccCCCchHH
Q 005908          136 LEEVMG---PIMQQFR--EIETCVECSATTMIQVPDV  167 (670)
Q Consensus       136 ~~~~~~---~~~~~~~--~~~~~~~~SA~~~~gi~~l  167 (670)
                      ..+...   .+...++  ...+++++||++|.|+.++
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222222   2233332  1247999999999999864

>PLN03127 Elongation factor Tu; Provisional

Probab=99.40  E-value=3.4e-12  Score=137.76  Aligned_cols=164  Identities=13%  Similarity=0.173  Sum_probs=103.1

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcC------CC--C--------CC-CCCCCCCeEeCCcccCCceeEEEEeCCCC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATE------SV--P--------EK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSS   69 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~------~~--~--------~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~   69 (670)
                      ...++.++|+++|+.++|||||+++|.+.      ..  .        ++ ..++... .....+..++..+.++||||+
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh  134 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGH  134 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCc
Confidence            34567899999999999999999999732      10  0        00 1111111 122334456778999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCcc-chhhhhhHHHHHh
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF  147 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~  147 (670)
                      .+|...+...+..+|++++|+|+++...-+.  ...+..+...  ++| +|++.||+|+.+..... .....+..+...+
T Consensus       135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~  210 (447)
T PLN03127        135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY  210 (447)
T ss_pred             cchHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence            9887777777788999999999876543322  2355566666  788 57899999997532210 0111222333322


Q ss_pred             c---cCCeEEEeCcc---cCCC-------chHHHHHHHHHH
Q 005908          148 R---EIETCVECSAT---TMIQ-------VPDVFYYAQKAV  175 (670)
Q Consensus       148 ~---~~~~~~~~SA~---~~~g-------i~~l~~~i~~~~  175 (670)
                      +   ...+++++||.   +|.|       +.+|++.+...+
T Consensus       211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            2   12478888886   4555       456666555543

>PRK12289 GTPase RsgA; Reviewed

Probab=99.40  E-value=3e-12  Score=133.16  Aligned_cols=86  Identities=19%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             hhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeE
Q 005908           75 KLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (670)
Q Consensus        75 ~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (670)
                      +....+.++|.+++|+|+.++. +...+. +|+......  ++|++||+||+|+.+...   . +........++  .++
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~~--~ip~ILVlNK~DLv~~~~---~-~~~~~~~~~~g--~~v  152 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAEST--GLEIVLCLNKADLVSPTE---Q-QQWQDRLQQWG--YQP  152 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEEchhcCChHH---H-HHHHHHHHhcC--CeE
Confidence            3446789999999999998775 343444 466655443  899999999999964311   1 11112223344  368


Q ss_pred             EEeCcccCCCchHHHH
Q 005908          154 VECSATTMIQVPDVFY  169 (670)
Q Consensus       154 ~~~SA~~~~gi~~l~~  169 (670)
                      +.+||++|.|++++++
T Consensus       153 ~~iSA~tg~GI~eL~~  168 (352)
T PRK12289        153 LFISVETGIGLEALLE  168 (352)
T ss_pred             EEEEcCCCCCHHHHhh
Confidence            9999999999987665

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.39  E-value=8.1e-12  Score=133.91  Aligned_cols=147  Identities=17%  Similarity=0.147  Sum_probs=96.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcC------CCCCCC---C-----CCcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSENY---A-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~------~~~~~~---~-----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      .++.++|+++|..++|||||+++|++.      .....+   +     ...+.......+.++.....+.+||++|++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            356799999999999999999999842      111000   0     00111122233344434567889999999887


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCCccc----HHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ  560 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~NK~Dl~~~~~~----~~~~~~~~~  560 (670)
                      ...  .......+|++++|+|++++..-+ ..+.+..+...      ++|.+ +++||+|+.+....    .++++++.+
T Consensus        89 ~~~--~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        89 VKN--MITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHH--HHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            654  556667899999999999864422 33344444433      57755 68999999864322    235666777


Q ss_pred             HhCC----CCcEEeecccC
Q 005908          561 ELGI----EPPIPVSMKSK  575 (670)
Q Consensus       561 ~~~~----~~~~~vSA~~g  575 (670)
                      .+++    .|++++||++|
T Consensus       160 ~~~~~~~~~~ii~vSa~~g  178 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKA  178 (394)
T ss_pred             hcCCCccCccEEECccccc
Confidence            7764    46999999987

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.39  E-value=1.4e-12  Score=128.33  Aligned_cols=145  Identities=16%  Similarity=0.119  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC------------------------CCC-------CCcccceEEEEEEcCCCceE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSE------------------------NYA-------PTTGEQYAVNVVDQPGGNKK  473 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~------------------------~~~-------~t~~~~~~~~~vd~~g~~~~  473 (670)
                      +|+++|.+++|||||+.+|+...-..                        ..+       ..++.+.....+.+  +...
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence            48999999999999999997421110                        000       00111122223333  3467


Q ss_pred             EEEEecCChhhHhhhhchHhhcccccEEEEEEECCCccc---H---HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      +.+||++|+..+...  ....+..+|++++|+|++++..   |   ............. .    .+|+++|+||+|+..
T Consensus        79 i~liDtpG~~~~~~~--~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~iiivvNK~Dl~~  151 (219)
T cd01883          79 FTILDAPGHRDFVPN--MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G----VKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEEEECCChHHHHHH--HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C----CCeEEEEEEcccccc
Confidence            888999998766554  5667788999999999998521   1   1122222222222 1    368999999999984


Q ss_pred             C---ccc----HHHHHHHHHHhCC----CCcEEeecccC-ChH
Q 005908          548 Y---TMA----VQDSARVTQELGI----EPPIPVSMKSK-DLN  578 (670)
Q Consensus       548 ~---~~~----~~~~~~~~~~~~~----~~~~~vSA~~g-~v~  578 (670)
                      .   +..    .++++.+.+..++    .+++++||++| |++
T Consensus       152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            2   111    2333334555554    35999999999 987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PLN03126 Elongation factor Tu; Provisional

Probab=99.39  E-value=3.4e-12  Score=138.35  Aligned_cols=153  Identities=15%  Similarity=0.196  Sum_probs=101.3

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCC------CCCC-----CC---CCCCeE--eCCcccCCceeEEEEeCCCCcc
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESV------PEKV-----PP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE   71 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~------~~~~-----~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~   71 (670)
                      ..++.++|+++|++++|||||+++|++...      ....     .+   ..+.+.  ....+..++..+.++||||+.+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            457789999999999999999999995321      1000     00   000000  1122445677899999999999


Q ss_pred             chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhc-
Q 005908           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR-  148 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~-  148 (670)
                      |...+...+..+|++++|+|+.+...-..  ..++..+...  ++| +|+++||+|+.+.... ....+.+..+...++ 
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            88888888899999999999886543332  2355556655  778 7789999999753211 012223444444432 


Q ss_pred             --cCCeEEEeCcccCCCc
Q 005908          149 --EIETCVECSATTMIQV  164 (670)
Q Consensus       149 --~~~~~~~~SA~~~~gi  164 (670)
                        ...+++++||.+|.++
T Consensus       233 ~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        233 PGDDIPIISGSALLALEA  250 (478)
T ss_pred             CcCcceEEEEEccccccc
Confidence              1247999999998665

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.38  E-value=5.4e-12  Score=125.14  Aligned_cols=167  Identities=18%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----hhchHhhcccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALASC  498 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~a  498 (670)
                      --|.+||-||+|||||++++...+..+...|-|+-.-..-++.+. ....+.+-|.+|--+-.+     -.+-...+.++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            358899999999999999999887666555533322222333333 445566667766311111     11245677899


Q ss_pred             cEEEEEEECCCcc---cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeeccc
Q 005908          499 DVTIFVYDSSDEY---SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       499 d~vllv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      .++++|+|++..+   -.++...+..++..|...- .++|.++|+||+|+...... ....+.+.+..+....+++||.+
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L-~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL-AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh-ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            9999999998544   3566666677776664321 26999999999996653322 44444555555655444499999


Q ss_pred             C-ChHHHHHHHHHHHhCCC
Q 005908          575 K-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~~~  592 (670)
                      + |+++|...+.+.+....
T Consensus       318 ~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         318 REGLDELLRALAELLEETK  336 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhh
Confidence            9 99999999999886543

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.38  E-value=3.4e-11  Score=123.84  Aligned_cols=162  Identities=19%  Similarity=0.148  Sum_probs=97.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCC-Cc-ccceEEEEEE-------------------cCC-CceEEEEEecCCh-
Q 005908          426 CLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQYAVNVVD-------------------QPG-GNKKTLILQEIPE-  482 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~~~~~~~~~-t~-~~~~~~~~vd-------------------~~g-~~~~~~i~d~~g~-  482 (670)
                      |+++|.||||||||+|+|++........| || ........+.                   .+| ....+.+||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            58999999999999999999875432222 22 2222111110                   122 2246788999996 


Q ss_pred             ---hhHhhh-hchHhhcccccEEEEEEECCCc-------------ccHHHH-------HHH--------HHHHH------
Q 005908          483 ---EGVKKI-LSNKEALASCDVTIFVYDSSDE-------------YSWKRT-------KEL--------LVEVA------  524 (670)
Q Consensus       483 ---~~~~~~-~~~~~~~~~ad~vllv~D~s~~-------------~s~~~~-------~~~--------~~~i~------  524 (670)
                         ++...+ .+....+++||++++|+|++..             +..+++       ..|        +..+.      
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               334433 1234568999999999999731             001111       111        00000      


Q ss_pred             --------------------------HhcC-C------------------CCCCCcEEEEEeCCCCCCCcccHHHHHHHH
Q 005908          525 --------------------------RLGE-D------------------SGYGVPCLLIASKDDLKPYTMAVQDSARVT  559 (670)
Q Consensus       525 --------------------------~~~~-~------------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  559 (670)
                                                +... .                  ....+|+|+|+||+|+.....   ..+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence                                      0000 0                  012579999999999864322   222333


Q ss_pred             HHhCCCCcEEeecccC-ChHHHHH-HHHHHHhC
Q 005908          560 QELGIEPPIPVSMKSK-DLNNVFS-RIIWAAEH  590 (670)
Q Consensus       560 ~~~~~~~~~~vSA~~g-~v~~l~~-~l~~~~~~  590 (670)
                      ......+++++||+.+ ++.++.+ .+.+.++.
T Consensus       238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence            3444556999999999 9999998 58888754

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.38  E-value=1.5e-11  Score=133.43  Aligned_cols=148  Identities=17%  Similarity=0.125  Sum_probs=98.3

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCC------CC---C-----CCcccceE--EEEEEcCCCceEEEEEecCCh
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NY---A-----PTTGEQYA--VNVVDQPGGNKKTLILQEIPE  482 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~------~~---~-----~t~~~~~~--~~~vd~~g~~~~~~i~d~~g~  482 (670)
                      ..+..++|+++|.+++|||||+++|++.....      .+   +     ...+....  ...+.+  ....+.++|++|+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh  154 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH  154 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCH
Confidence            34667999999999999999999999632111      00   0     00111111  222333  3457788999999


Q ss_pred             hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHH
Q 005908          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSAR  557 (670)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~  557 (670)
                      +.|-.-  ....+..+|++++|+|+.++.. ....+++..+...      ++| +|+++||+|+.+.+..    .+++..
T Consensus       155 ~~f~~~--~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~  225 (478)
T PLN03126        155 ADYVKN--MITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV------GVPNMVVFLNKQDQVDDEELLELVELEVRE  225 (478)
T ss_pred             HHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence            887664  5677789999999999998754 3334444444444      678 7889999999863322    234555


Q ss_pred             HHHHhCC----CCcEEeecccC-Ch
Q 005908          558 VTQELGI----EPPIPVSMKSK-DL  577 (670)
Q Consensus       558 ~~~~~~~----~~~~~vSA~~g-~v  577 (670)
                      +.+..++    .|++++||.+| |+
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHhcCCCcCcceEEEEEccccccc
Confidence            5666543    26999999988 54

>PRK09866 hypothetical protein; Provisional

Probab=99.38  E-value=5.6e-11  Score=128.10  Aligned_cols=112  Identities=17%  Similarity=0.125  Sum_probs=78.0

Q ss_pred             eeEEEEeCCCCccc-----hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908           59 VPVTIIDTSSSLEN-----KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (670)
Q Consensus        59 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~  133 (670)
                      ..+.++||||....     ...+...+..+|+|+||+|.+...+..+.  .+.+.+++...+.|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence            35789999998642     22345689999999999999876554442  367777766434699999999998643321


Q ss_pred             cchhhhhhHHHH-H----hccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908          134 TSLEEVMGPIMQ-Q----FREIETCVECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       134 ~~~~~~~~~~~~-~----~~~~~~~~~~SA~~~~gi~~l~~~i~~~  174 (670)
                        ..+.+..+.. .    ......+|++||++|.|++++++.+...
T Consensus       308 --dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        308 --DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             --hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence              1233333322 1    1123469999999999999999988764

>cd04169 RF3 RF3 subfamily

Probab=99.37  E-value=1.5e-11  Score=124.13  Aligned_cols=131  Identities=19%  Similarity=0.216  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------C-Cc----------ccceEEEEEEcCCCceEEEEEecCChhh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYA---------P-TT----------GEQYAVNVVDQPGGNKKTLILQEIPEEG  484 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~---------~-t~----------~~~~~~~~vd~~g~~~~~~i~d~~g~~~  484 (670)
                      +|+|+|.+|+|||||+++|+.........         + |+          +..+......+..+..++.+||++|+..
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            69999999999999999998532221111         1 11          1122333334444567888999999988


Q ss_pred             HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC
Q 005908          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI  564 (670)
Q Consensus       485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  564 (670)
                      |...  ....++.+|++++|+|++++.. .....++......      ++|+++++||+|+.... .....+++...++.
T Consensus        84 f~~~--~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~~------~~P~iivvNK~D~~~a~-~~~~~~~l~~~l~~  153 (267)
T cd04169          84 FSED--TYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRLR------GIPIITFINKLDREGRD-PLELLDEIEEELGI  153 (267)
T ss_pred             HHHH--HHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHhc------CCCEEEEEECCccCCCC-HHHHHHHHHHHHCC
Confidence            7765  5678899999999999998754 2233444443332      69999999999987632 22335566666776


Q ss_pred             C
Q 005908          565 E  565 (670)
Q Consensus       565 ~  565 (670)
                      .
T Consensus       154 ~  154 (267)
T cd04169         154 D  154 (267)
T ss_pred             C
Confidence            5

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK09866 hypothetical protein; Provisional

Probab=99.37  E-value=1.6e-11  Score=132.14  Aligned_cols=109  Identities=16%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             eEEEEEecCChhh-----HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908          472 KKTLILQEIPEEG-----VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (670)
Q Consensus       472 ~~~~i~d~~g~~~-----~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~  546 (670)
                      ..+.++||+|-..     ....  ....+..+|+|++|+|+++..+.. .....+.+.+...    +.|+++|+||+|+.
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~--M~eqL~eADvVLFVVDat~~~s~~-DeeIlk~Lkk~~K----~~PVILVVNKIDl~  302 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKM--LNQQLARASAVLAVLDYTQLKSIS-DEEVREAILAVGQ----SVPLYVLVNKFDQQ  302 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHH--HHHHHhhCCEEEEEEeCCCCCChh-HHHHHHHHHhcCC----CCCEEEEEEcccCC
Confidence            3566799999633     2222  345799999999999998865533 2344455544311    25999999999987


Q ss_pred             CCcc-cHHHHHHHHHH------hCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908          547 PYTM-AVQDSARVTQE------LGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       547 ~~~~-~~~~~~~~~~~------~~~~~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      ++.. ..+.+..+.+.      ..+..+++|||++| |++++++.|.+.
T Consensus       303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            5322 23344444321      12446999999999 999999999873

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.36  E-value=4.7e-12  Score=143.81  Aligned_cols=156  Identities=15%  Similarity=0.061  Sum_probs=99.7

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC------------CCCCC-CC------------------e--EeCCc
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------------VPPVH-AP------------------T--RLPPD   53 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~------------~~~~~-~~------------------~--~~~~~   53 (670)
                      ...++.++|+|+|++|+|||||+++|+...-...            ..++. +.                  +  .....
T Consensus        19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~   98 (632)
T PRK05506         19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY   98 (632)
T ss_pred             ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence            3456789999999999999999999986541111            11110 00                  0  01112


Q ss_pred             ccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908           54 FYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (670)
Q Consensus        54 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~  133 (670)
                      +..++..+.|+||||+++|...+...+..+|++++|+|++....-+..  .....+.... .+|+|+|+||+|+.+....
T Consensus        99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~~-~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506         99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLLG-IRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHhC-CCeEEEEEEecccccchhH
Confidence            335567899999999988776667788999999999998765322211  1233344332 3678999999999752221


Q ss_pred             cchhh---hhhHHHHHhcc-CCeEEEeCcccCCCchH
Q 005908          134 TSLEE---VMGPIMQQFRE-IETCVECSATTMIQVPD  166 (670)
Q Consensus       134 ~~~~~---~~~~~~~~~~~-~~~~~~~SA~~~~gi~~  166 (670)
                       ...+   .+..+...++. ..+++++||++|.|+.+
T Consensus       176 -~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 -VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             -HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence             1222   22233334332 12589999999999984

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=3.8e-12  Score=112.36  Aligned_cols=159  Identities=14%  Similarity=0.195  Sum_probs=116.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.-|++++|-.|+|||||++.|-.++.....|+..+++.   .....+++++.+|.+|+..-...+..++..+|++++.
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE---~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH---HheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            4567999999999999999999999987777776544443   4567789999999999988888899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------------CCeEEEe
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------------IETCVEC  156 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  156 (670)
                      +|+-+.+.|.+.+.++-..+... -.+.|+++.+||+|....... ..-.....+.+..+.            ....+.|
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se-~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE-DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH-HHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            99999999988876555544332 248999999999999876432 111111112222111            1246778


Q ss_pred             CcccCCCchHHHHHHH
Q 005908          157 SATTMIQVPDVFYYAQ  172 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~  172 (670)
                      |...+.|-.+.|.++.
T Consensus       174 si~~~~gy~e~fkwl~  189 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWLS  189 (193)
T ss_pred             EEEccCccceeeeehh
Confidence            8888777666665543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.36  E-value=6.4e-12  Score=124.65  Aligned_cols=160  Identities=18%  Similarity=0.158  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-------hhHHHhccCCE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKRADA   85 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~   85 (670)
                      -|.+||-||+|||||++.+..-+. ..++|-|+-.-.+.+-.......|.+-|.||..+..+       ..-.++..+-+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            367999999999999999987762 2224322111111111114556799999999764322       22366788999


Q ss_pred             EEEEEECCChhh---HHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           86 VVLTYACNQQST---LSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        86 ii~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++.|+|++..+.   .++.. .+..++..+.   .++|.+||+||+|+....+.  .+.....+.+..+....++ +||.
T Consensus       241 L~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~~~~~~~~~~-ISa~  316 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAEALGWEVFYL-ISAL  316 (369)
T ss_pred             eEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHHhcCCCccee-eehh
Confidence            999999986553   55554 3677776654   38999999999996644322  2333344444444322233 9999


Q ss_pred             cCCCchHHHHHHHHHHcC
Q 005908          160 TMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~  177 (670)
                      +++|++++...+.+.+..
T Consensus       317 t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         317 TREGLDELLRALAELLEE  334 (369)
T ss_pred             cccCHHHHHHHHHHHHHH
Confidence            999999999988877653

>PRK00049 elongation factor Tu; Reviewed

Probab=99.35  E-value=2.9e-11  Score=129.44  Aligned_cols=161  Identities=16%  Similarity=0.151  Sum_probs=103.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCC------CCC-----CC---CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENY-----AP---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~------~~~-----~~---t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      .+..++|+++|..++|||||+++|++....      ..+     .+   ..+.......+.+..+...+.++|++|+..|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356799999999999999999999973110      000     00   1111111222223223456778999999776


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCCccc----HHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ  560 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~NK~Dl~~~~~~----~~~~~~~~~  560 (670)
                      ...  ....+..+|++++|+|+.++.. .....++..+...      ++|.+ +++||+|+.+....    ..++.++..
T Consensus        89 ~~~--~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~  159 (396)
T PRK00049         89 VKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             HHH--HHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc------CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence            554  5667889999999999988644 3344444444443      68876 58999999753222    234445555


Q ss_pred             HhCC----CCcEEeecccC-C----------hHHHHHHHHHHHh
Q 005908          561 ELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE  589 (670)
Q Consensus       561 ~~~~----~~~~~vSA~~g-~----------v~~l~~~l~~~~~  589 (670)
                      ..++    .|++++||++| +          +..+++.|...+.
T Consensus       160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            5554    36899999986 4          4577777776544

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.35  E-value=5e-12  Score=136.60  Aligned_cols=154  Identities=14%  Similarity=0.091  Sum_probs=100.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCC--------------------------CCCCCC--CCeE---eCCcccCC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE--------------------------KVPPVH--APTR---LPPDFYPD   57 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--------------------------~~~~~~--~~~~---~~~~~~~~   57 (670)
                      .++.++|+++|+.++|||||+.+|+...-..                          +.....  ...+   ....+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            4678999999999999999999997422100                          000000  0000   11224456


Q ss_pred             ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCC-CEEEEEeCCCCCC
Q 005908           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLS-------RLSSYWLPELRRLEIKV-PIIVAGCKLDLRG  129 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~-pvilv~NK~Dl~~  129 (670)
                      +..++++||||+++|...+...+..+|++|+|+|+++. .++       ...+ .+..++..  ++ ++|+++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~~~--gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAFTL--GVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHHHc--CCCcEEEEEEcccCCc
Confidence            78999999999999999999999999999999999863 221       2222 33334444  66 4788999999862


Q ss_pred             CC--Cc--cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchH
Q 005908          130 DH--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (670)
Q Consensus       130 ~~--~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~  166 (670)
                      ..  +.  ....+.+..+.++.+.   ..+++++||++|.|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11  10  0112344555555542   13799999999999864

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.35  E-value=1.8e-11  Score=133.42  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=94.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------CCCcc-------------------cceEEEEEEcCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTTG-------------------EQYAVNVVDQPG  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------------~~t~~-------------------~~~~~~~vd~~g  469 (670)
                      +..++|+|+|.+++|||||+++|+........            .++++                   ............
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            55699999999999999999999865433221            11110                   111122222222


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      ....+.++|++|++.|...  ....+..+|++++|+|++.+..-+. ......+....     ..|+|+++||+|+.+..
T Consensus       105 ~~~~i~~iDTPGh~~f~~~--~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~  176 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRN--MATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG-----IKHLVVAVNKMDLVDYS  176 (474)
T ss_pred             CCcEEEEEECCCcHHHHHH--HHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC-----CCceEEEEEeeccccch
Confidence            3457788999998877553  4556799999999999987643211 11122222221     25789999999997522


Q ss_pred             c-c----HHHHHHHHHHhC---CCCcEEeecccC-ChHHH
Q 005908          550 M-A----VQDSARVTQELG---IEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       550 ~-~----~~~~~~~~~~~~---~~~~~~vSA~~g-~v~~l  580 (670)
                      . .    ..+...+.+..+   ..+++++||++| |+.++
T Consensus       177 ~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        177 EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1 1    122333334443   246999999999 98764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.35  E-value=1.3e-11  Score=140.38  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=97.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------CCCcccceE---------------------EEEEE
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTTGEQYA---------------------VNVVD  466 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------------~~t~~~~~~---------------------~~~vd  466 (670)
                      .+..++|+|+|.+|+|||||+++|+........            .+++++.+.                     ...+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            345689999999999999999999976544331            122221111                     22233


Q ss_pred             cCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908          467 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (670)
Q Consensus       467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~  546 (670)
                      ++  ...+.++|++|++.+...  ....+..+|++++|+|++.+..- ...+....+....     ..|+++++||+|+.
T Consensus       101 ~~--~~~~~liDtPG~~~f~~~--~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~~-----~~~iivvvNK~D~~  170 (632)
T PRK05506        101 TP--KRKFIVADTPGHEQYTRN--MVTGASTADLAIILVDARKGVLT-QTRRHSFIASLLG-----IRHVVLAVNKMDLV  170 (632)
T ss_pred             cC--CceEEEEECCChHHHHHH--HHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHhC-----CCeEEEEEEecccc
Confidence            33  346678999999877553  45578899999999999876432 2222222233221     25788999999997


Q ss_pred             CCcc-c----HHHHHHHHHHhCCC--CcEEeecccC-ChHH
Q 005908          547 PYTM-A----VQDSARVTQELGIE--PPIPVSMKSK-DLNN  579 (670)
Q Consensus       547 ~~~~-~----~~~~~~~~~~~~~~--~~~~vSA~~g-~v~~  579 (670)
                      +... .    ..+..++.+.+++.  +++++||++| |+.+
T Consensus       171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            5221 1    23334444566653  5899999999 9874

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=7.7e-12  Score=131.79  Aligned_cols=160  Identities=16%  Similarity=0.124  Sum_probs=114.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      .+..-|+++|+-.-|||||+..+.+.+......+-.+...  +.+..+. ....+.|+||||++.|..+...-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3456799999999999999999998887666554332222  2222221 346799999999999999998888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh---hHHHHHhccCCeEEEeCcccCCC
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      ++|+|+++.-.-+.+.  -++.++..  +.|++++.||+|+.+.+.. ......   ......++....++++||++|+|
T Consensus        83 ILVVa~dDGv~pQTiE--AI~hak~a--~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          83 ILVVAADDGVMPQTIE--AINHAKAA--GVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEEEccCCcchhHHH--HHHHHHHC--CCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            9999999864433332  34445555  8999999999999864322 111111   11233344445799999999999


Q ss_pred             chHHHHHHHHH
Q 005908          164 VPDVFYYAQKA  174 (670)
Q Consensus       164 i~~l~~~i~~~  174 (670)
                      |++|++.+.-.
T Consensus       158 i~eLL~~ill~  168 (509)
T COG0532         158 IDELLELILLL  168 (509)
T ss_pred             HHHHHHHHHHH
Confidence            99999977643

>PRK12288 GTPase RsgA; Reviewed

Probab=99.34  E-value=1.4e-11  Score=128.18  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=59.8

Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ..++|.+++|++++...++..+.. |+......  ++|++||+||+|+...... .............+  .+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~~~--~i~~VIVlNK~DL~~~~~~-~~~~~~~~~y~~~g--~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDR-YLVACETL--GIEPLIVLNKIDLLDDEGR-AFVNEQLDIYRNIG--YRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHH-HHHHHHhc--CCCEEEEEECccCCCcHHH-HHHHHHHHHHHhCC--CeEEEEeCC
Confidence            456899999999988888888874 76666544  7999999999999754211 01111112223343  379999999


Q ss_pred             cCCCchHHHH
Q 005908          160 TMIQVPDVFY  169 (670)
Q Consensus       160 ~~~gi~~l~~  169 (670)
                      ++.|++++++
T Consensus       192 tg~GideL~~  201 (347)
T PRK12288        192 TGEGLEELEA  201 (347)
T ss_pred             CCcCHHHHHH
Confidence            9999988776

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.34  E-value=2.8e-11  Score=118.36  Aligned_cols=113  Identities=16%  Similarity=0.125  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC--C----------------CcccceEEEEEEc------CCCceEEEEEecC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYA--P----------------TTGEQYAVNVVDQ------PGGNKKTLILQEI  480 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~----------------t~~~~~~~~~vd~------~g~~~~~~i~d~~  480 (670)
                      +|+|+|..++|||||+.+|+.........  .                |+...........      .|....+.+||++
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            69999999999999999998654221110  0                0001010111221      1336678899999


Q ss_pred             ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (670)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~  546 (670)
                      |++.|...  ...+++.+|++++|+|++++.+.+. ...+......      ++|+++|+||+|+.
T Consensus        82 G~~~f~~~--~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~------~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSE--VTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE------RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHH--HHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCcc
Confidence            99888876  7888999999999999999876553 3333333332      68999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.34  E-value=4.4e-12  Score=128.07  Aligned_cols=145  Identities=14%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCCC-------------cccceEEEEEEcCCCceEEEEEecCChhhHh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFS-----ENYAPT-------------TGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~-----~~~~~t-------------~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~  486 (670)
                      +|+|+|.+|+|||||+++|+.....     .+..++             ++.......+.+  +...+.++|++|...+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence            4899999999999999999742211     111111             011111222333  34677789999987766


Q ss_pred             hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-
Q 005908          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-  565 (670)
Q Consensus       487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-  565 (670)
                      ..  +..+++.+|++++|+|++++.. ......+..+...      ++|+++++||+|+.... .....+++...++.. 
T Consensus        79 ~~--~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~~------~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~  148 (270)
T cd01886          79 IE--VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADRY------NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANP  148 (270)
T ss_pred             HH--HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc
Confidence            55  6788999999999999998754 2234444444443      69999999999987522 223344455555543 


Q ss_pred             --CcEEeecccC--ChHHHH
Q 005908          566 --PPIPVSMKSK--DLNNVF  581 (670)
Q Consensus       566 --~~~~vSA~~g--~v~~l~  581 (670)
                        .++++||..+  |+-+++
T Consensus       149 ~~~~~Pisa~~~f~g~vd~~  168 (270)
T cd01886         149 VPLQLPIGEEDDFRGVVDLI  168 (270)
T ss_pred             eEEEeccccCCCceEEEEcc
Confidence              4689999876  655555

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.34  E-value=5.4e-11  Score=126.13  Aligned_cols=81  Identities=23%  Similarity=0.355  Sum_probs=54.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeE-----eCCc-----------------cc-CCceeEEEEeCCC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR-----LPPD-----------------FY-PDRVPVTIIDTSS   68 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~-----~~~~-----------------~~-~~~~~~~i~Dt~G   68 (670)
                      ++|+|||.||||||||+|+|++..+.. ++|.+.....     ....                 .. .....+++|||||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999887543 2432221111     1100                 00 1236789999999


Q ss_pred             Ccc----chhhhHHH---hccCCEEEEEEECC
Q 005908           69 SLE----NKGKLNEE---LKRADAVVLTYACN   93 (670)
Q Consensus        69 ~~~----~~~~~~~~---~~~ad~ii~v~d~~   93 (670)
                      ...    ...+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            642    23333344   89999999999996

>PLN03127 Elongation factor Tu; Provisional

Probab=99.33  E-value=4.5e-11  Score=129.05  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCC----------CCcccceEEEEEEcCCCceEEEEEecCChh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA----------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~----------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~  483 (670)
                      .+..++|+++|..++|||||+++|.+      ......+.          ..++.+.  ....+..+...+.++|++|+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence            45679999999999999999999973      22111110          1111122  223333244577889999987


Q ss_pred             hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCcccH----HHHHHH
Q 005908          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV----QDSARV  558 (670)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~----~~~~~~  558 (670)
                      .|-..  ....+..+|++++|+|++++.. .+..+.+..+...      ++| +|+++||+|+.+.....    .++.++
T Consensus       136 ~f~~~--~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~  206 (447)
T PLN03127        136 DYVKN--MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV------GVPSLVVFLNKVDVVDDEELLELVEMELREL  206 (447)
T ss_pred             chHHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence            76553  4556678999999999988744 3334444444443      688 57889999998633222    233344


Q ss_pred             HHHhCC----CCcEEeecc---cC-C-------hHHHHHHHHHHHhCC
Q 005908          559 TQELGI----EPPIPVSMK---SK-D-------LNNVFSRIIWAAEHP  591 (670)
Q Consensus       559 ~~~~~~----~~~~~vSA~---~g-~-------v~~l~~~l~~~~~~~  591 (670)
                      ...+++    .|++++||.   +| |       +.+|++.+.+.+..+
T Consensus       207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p  254 (447)
T PLN03127        207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP  254 (447)
T ss_pred             HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence            444443    368888876   45 5       678888887766533

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.33  E-value=3.7e-11  Score=132.04  Aligned_cols=117  Identities=16%  Similarity=0.149  Sum_probs=79.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------C-C-C----------cccceEEEEEEcCCCceEEEEEecCC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------A-P-T----------TGEQYAVNVVDQPGGNKKTLILQEIP  481 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~--------~-~-t----------~~~~~~~~~vd~~g~~~~~~i~d~~g  481 (670)
                      +..+|+|+|.+|+|||||+++|+...-....        . . +          .+..+....+.+..+...+.+||++|
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            3468999999999999999999732111100        0 0 0          11122223333333456788999999


Q ss_pred             hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      +..|...  ...+++.+|++|+|+|++++.. .....++......      ++|+++++||+|+..
T Consensus        89 ~~df~~~--~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~------~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSED--TYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRLR------DTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHH--HHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHhc------CCCEEEEEECCcccc
Confidence            9887765  6778899999999999998754 2334444444333      799999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	670
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		7e-08
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		7e-08
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		8e-08
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-08
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		8e-08
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-07
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-07
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-07
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-07
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-07
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-07
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-07
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-07
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-07
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-06
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-06
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-06
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-05
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-05
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-05
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-05
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-04
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-04
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-04
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-04
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-04
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-04
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-04
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-04
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-04
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-04
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-04
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-04
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-04
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-04
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-04
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-04
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-04
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-04
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-04
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-04
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-04
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-04
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-04
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-04
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-04
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-04
1mh1_A	186	Small G-Protein Length = 186		4e-04
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-04
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-04
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-04
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-04
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-04
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		5e-04
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		5e-04
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-04
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		6e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-04
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		7e-04
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		7e-04
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		8e-04
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		8e-04
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		9e-04

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 69  ERFRTITSSYYRGAHG--IIVVYDVTDQESYANVKQWLQEIDRYASEN---VNKLLVGNK 123
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGI-PFLETSAKN 155

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 69  ERFRTITSSYYRGAHG--IIVVYDVTDQESYANVKQWLQEIDRYASEN---VNKLLVGNK 123
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGI-PFLETSAKN 155

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   +S  W+PEL+     VPI++ G KLDLR D         A
Sbjct: 78  RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGA 137
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
             +  V G  +++       +ECS+ +   V  VF  A + VL P
Sbjct: 138 VPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  I     
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           +E  + I +   + A+      I VYD +DE ++   K+    V     D       LL+
Sbjct: 62  QERFRTITTAYYRGAMG----IILVYDITDERTFTNIKQWFKTVNEHANDEA---QLLLV 114
Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
            +K D++   +       + +ELGI P I  S K+ D +N +F
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----NATSLE 137
           AD  VL ++   +++   +   W+PELRR    VPI++ G KLDLR D      +   + 
Sbjct: 81  ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT 140
Query: 138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
              G  +++       +ECS+ T   V  VF  A K VL P
Sbjct: 141 STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   ++  W+PELR     VPII+ G KLDLR D         A
Sbjct: 76  RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
             +    G  +++       +ECS+ T   V  VF  A K VL P
Sbjct: 136 VPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ 467
           R  S      ++  ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD 
Sbjct: 5   RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI 64
Query: 468 PGGNKKTLILQEIPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 525
            G   K  +     +E  + I +   + A+      I VYD +DE ++   K+    V  
Sbjct: 65  NGKKVKLQLWDTAGQERFRTITTAYYRGAMG----IILVYDVTDERTFTNIKQWFKTVNE 120
Query: 526 LGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
              D       LL+ +K D++   +       + +ELGI P I  S K+ D +N +F
Sbjct: 121 HANDEA---QLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 173

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  +     
Sbjct: 6   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 482 EEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           +E  + I +   + A+      I VYD +DE ++   K+    V     D       LL+
Sbjct: 66  QERFRTITTAYYRGAMG----IILVYDVTDERTFTNIKQWFKTVNEHANDEA---QLLLV 118
Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
            +K D++   +       + +ELGI P I  S K+ D +N +F
Sbjct: 119 GNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 160

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  I     
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I +     A     I VYD +DE ++   K+    V     D       LL+ +
Sbjct: 62  QERFRTITTAYYRGAXG--IILVYDITDERTFTNIKQWFKTVNEHANDEA---QLLLVGN 116
Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
           K D +   +       + +ELGI P I  S K+ D +N +F
Sbjct: 117 KSDXETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 66  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 120
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 152

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 85  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 139
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 171

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 66  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 120
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 152

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  +     
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I +     A     I VYD +DE ++   K+    V     D       LL+ +
Sbjct: 62  QERFRTITTAYYRGAXG--IILVYDVTDERTFTNIKQWFKTVNEHANDEA---QLLLVGN 116
Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
           K D +   +       + +ELGI P I  S K+ D +N +F
Sbjct: 117 KSDXETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 76  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 130
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 162

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+  K
Sbjct: 68  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGIK 122
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 154

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GK+ LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 76  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 130
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 162

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   +   WLPEL+     +PI++ G KLDLR D         A
Sbjct: 76  RGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
            S+    G  +++       +ECS+ T   V  VF  A +  L P
Sbjct: 136 ASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 93  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 147
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 179

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +E 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
            + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K D
Sbjct: 61  FRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNKCD 115
Query: 545 LKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
           L    +    +A+     LGI P +  S K+
Sbjct: 116 LTTKKVVDYTTAKEFADSLGI-PFLETSAKN 145

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
           LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +E  +
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
            I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K DL
Sbjct: 62  TITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNKCDL 115

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
           RL P  YP  V  T       + ++GK   +   AD  ++ ++    ++   + + W PE
Sbjct: 68  RLRPLSYPQTVGETY---GKDITSRGK---DKPIADVFLICFSLVSPASFENVRAKWYPE 121
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSAT 159
           +R      PII+ G KLDLR D +      E+ + PI     +   +EI     +ECSA 
Sbjct: 122 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 160 TMIQVPDVFYYAQKAVLHP 178
           T   +  VF  A +AVL P
Sbjct: 182 TQRGLKTVFDEAIRAVLCP 200

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 80  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 139
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL P
Sbjct: 140 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL P
Sbjct: 134 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 82  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 141
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 142 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVMGP 142
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D H A  L ++   
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQE 137
Query: 143 IMQ--QFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            ++  + R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVL 176
            + P  ++ R++   +      ECSA T   V +VF  A +A L
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 67  SSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL 125
           ++ LE+  +L      + D  ++ ++    ++   + + W PE+R      PII+ G KL
Sbjct: 58  TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117
Query: 126 DLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           DLR D +      E+ + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 177 HP 178
            P
Sbjct: 178 CP 179

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 67  SSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL 125
           ++ LE+  +L      + D  ++ ++    ++   + + W PE+R      PII+ G KL
Sbjct: 58  TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117
Query: 126 DLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           DLR D +      E+ + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 177 HP 178
            P
Sbjct: 178 CP 179

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 81  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL
Sbjct: 141 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           + ++ K Q    + + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G 
Sbjct: 2   AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGE 60
Query: 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS 530
             +  IL    +E    I  N     S +  + V+  ++  S+  T +   ++ R+ ED 
Sbjct: 61  EVQIDILDTAGQEDYAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 118
Query: 531 GYGVPCLLIASKDDLK 546
              VP LL+ +K DL+
Sbjct: 119 --NVPFLLVGNKSDLE 132

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 41  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 160
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP- 481
           + +C++ G    GK+ LL S+    F E Y PT  + YAV+V    GG +  L L +   
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVT--VGGKQYLLGLYDTAG 75
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E   ++      +   DV +  +   +  S++  KE  V   +   +    VP LLI +
Sbjct: 76  QEDYDRLRPLSYPMT--DVFLICFSVVNPASFQNVKEEWVPELK---EYAPNVPFLLIGT 130
Query: 542 KDDLK--PYTMA-----------VQDSARVTQELGIEPPIPVS-MKSKDLNNVFSRIIWA 587
           + DL+  P T+A           V+   ++ +E+G    +  S +  K L  VF   I A
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190
Query: 588 AEHP 591
              P
Sbjct: 191 ILTP 194

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 78  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 137
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 138 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 76  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
           Q    + + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL
Sbjct: 13  QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDIL 71
Query: 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
               +E    I  N     S +  + V+  ++  S+  T +   ++ R+ ED    VP L
Sbjct: 72  DTAGQEDYAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFL 127
Query: 538 LIASKDDLK 546
           L+ +K DL+
Sbjct: 128 LVGNKSDLE 136

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
           Q    + + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL
Sbjct: 1   QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDIL 59
Query: 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
               +E    I  N     S +  + V+  ++  S+  T +   ++ R+ ED    VP L
Sbjct: 60  DTAGQEDYAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFL 115
Query: 538 LIASKDDLK 546
           L+ +K DL+
Sbjct: 116 LVGNKSDLE 124

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-MG 141
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D H    L ++   
Sbjct: 98  DVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157
Query: 142 PIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
           P+  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 20  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 80  DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 43  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 100
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFL---ERPFSENYAPTTGEQYAVNVVDQPGGNKKTL 475
           ++ +V++ LL G    GKSAL   F    + P +E    T      V+      G + +L
Sbjct: 3   SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASL 56
Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYG 533
           ++ +I E+   + L     +A  D  + VY  +D+ S+++  EL V++  AR  +D    
Sbjct: 57  MVYDIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---- 111
Query: 534 VPCLLIASKDDL 545
           VP +L+ +K DL
Sbjct: 112 VPIILVGNKSDL 123

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSF---LERPFSENYAPTTGEQYAVNVVDQPGGNKKTL 475
           ++ +V++ LL G    GKSAL   F    + P +E    T      V+      G + +L
Sbjct: 3   SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASL 56
Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYG 533
           ++ +I E+   + L     +A  D  + VY  +D+ S+++  EL V++  AR  +D    
Sbjct: 57  MVYDIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---- 111
Query: 534 VPCLLIASKDDL 545
           VP +L+ +K DL
Sbjct: 112 VPIILVGNKSDL 123

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL    +E 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
              I  N     S +  + V+  ++  S+  T +   ++ R+ ED    VP LL+ +K D
Sbjct: 65  YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 120
Query: 545 LK 546
           L+
Sbjct: 121 LE 122

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 52/137 (37%), Gaps = 34/137 (24%)
Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
           RL P FYPD                         A  ++L +     ++   + + W PE
Sbjct: 97  RLRPLFYPD-------------------------ASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS------LEEVM---GPIMQQFREIETCVECSAT 159
           +     KVPIIV GCK DLR D +  +      LE V    G  M +       +ECSA 
Sbjct: 132 VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
Query: 160 TMIQVPDVFYYAQKAVL 176
               V  VF  A +  L
Sbjct: 192 LHDNVHAVFQEAAEVAL 208

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 19  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 76
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 77  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 136
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 137 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
           D +++ ++ +   +L  +   W+PE++     VPII+   K DLR D H  T L  +   
Sbjct: 98  DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                 G  M    +    +ECSA T   V +VF  A +A L 
Sbjct: 158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFL---ERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           +V++ LL G    GKSAL   F    + P +E    T      V+      G + +L++ 
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 54
Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYGVPC 536
           +I E+   + L     +A  D  + VY  +D+ S+++  EL V++  AR  +D    VP 
Sbjct: 55  DIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD----VPI 109
Query: 537 LLIASKDDL 545
           +L+ +K DL
Sbjct: 110 ILVGNKSDL 118

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 36  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 95
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 96  DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 155
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 156 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 199

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ L+ G    GKS LL+ F+E  F ++   T G ++   VV+  G   KT+ LQ    
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG---KTVKLQIWDT 81
Query: 483 EGVKKILS-NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
            G ++  S  +         + VYD +   ++      L +   L   +   +  +L  +
Sbjct: 82  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN---IVVILCGN 138
Query: 542 KDDLKP-YTMAVQDSARVTQE 561
           K DL P   +   +++R  QE
Sbjct: 139 KKDLDPEREVTFLEASRFAQE 159

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 81  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 141 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	670
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-23
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-22
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-04
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-22
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	8e-22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-22
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-21
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	8e-21
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-04
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-20
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-20
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-05
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-20
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-04
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	9e-20
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-19
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-19
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-04
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	5e-07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-04
2ged_A	193	SR-beta, signal recognition particle receptor beta	8e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	6e-05
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-06
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	8e-06
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-06
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-06
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-05
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-04
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-06
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-04
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-06
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-05
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-05
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	4e-05
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-04
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-05
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	9e-05
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	9e-05
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-04
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-04
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-04
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-04
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-04
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-04
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-04
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-04
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-04
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-04
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-04
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-04
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-04
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-04

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 97.8 bits (244), Expect = 1e-23
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 33/195 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           GS S+SR  ++ V VGD   GK+ L+ +  +       P  + PT       +   +   
Sbjct: 1   GSMSASRF-IKCVTVGDGAVGKTCLLISYTSN----TFPTDYVPTVFDNFSANVVVNGAT 55

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
           V   + DT+          E+  R        AD  +L ++   +++   +S  W+PEL+
Sbjct: 56  VNLGLWDTAGQ--------EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107

Query: 111 RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM----QQF-REIETC--VECSATTMIQ 163
                VPI++ G KLDLR D           PI     ++  + I     +ECS+ +   
Sbjct: 108 HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167

Query: 164 VPDVFYYAQKAVLHP 178
           V  VF  A + VL P
Sbjct: 168 VKGVFDAAIRVVLQP 182

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 30/186 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            +C+  G    GK+ LL S+    F  +Y PT  + ++ NV     G    L L     Q
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV--VVNGATVNLGLWDTAGQ 66

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCL 537
           E  +    + LS + A    DV I  +    + S++   +  + E+         GVP +
Sbjct: 67  E--DYNRLRPLSYRGA----DVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIV 116

Query: 538 LIASKDDL-----------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           L+ +K DL               +       + + +G    I  S KS++ +  VF   I
Sbjct: 117 LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

Query: 586 WAAEHP 591
                P
Sbjct: 177 RVVLQP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 94.8 bits (236), Expect = 2e-22
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 2   PGGSGSSSRTG------VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY 55
           PG  G   R G      V+ V+VGD   GK+SL+ +  T   P      + PT    D +
Sbjct: 4   PGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT----EYIPTAF--DNF 57

Query: 56  PDRVPV-------TIIDTSSSLENKGKLNEEL-KRADAVVLTYACNQQSTLSRLSSYWLP 107
              V V        + DT+   +   KL        D  +L ++    S+   +S  W+P
Sbjct: 58  SAVVSVDGRPVRLQLCDTAGQ-DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVP 116

Query: 108 ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQF-----REI--ETCVECSA 158
           E+R    K PII+ G + DLR D       +     P+ ++       EI   + +ECSA
Sbjct: 117 EIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176

Query: 159 TTMIQVPDVFYYAQKAVLHP 178
            T   + +VF  A  A +  
Sbjct: 177 LTQKNLKEVFDAAIVAGIQY 196

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKK 473
           R      R V +C+L G    GK++L+ S+    +   Y PT  + ++  V     G   
Sbjct: 12  RAGGAEGRGV-KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV--SVDGRPV 68

Query: 474 TLILQEIP-EEGVKKI--LSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGED 529
            L L +   ++   K+  L         D+ +  +      S++   E  + E+      
Sbjct: 69  RLQLCDTAGQDEFDKLRPLCYTNT----DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK 124

Query: 530 SGYGVPCLLIASKDDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
                P +L+ ++ DL             K   +  + +  + +E+     I  S  ++ 
Sbjct: 125 ----APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQK 180

Query: 577 -LNNVFSRIIWAAEHP 591
            L  VF   I A    
Sbjct: 181 NLKEVFDAAIVAGIQY 196

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 94.0 bits (234), Expect = 5e-22
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 34/195 (17%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           GS  S    ++ V VGD   GK+ ++    +   P      + PT       +   D   
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPT----DYIPTVFDNFSANVAVDGQI 56

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
           V   + DT+          E+  R        AD  VL ++   +++   +   W+PELR
Sbjct: 57  VNLGLWDTAGQ--------EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR 108

Query: 111 RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-----REIETC--VECSATTMIQ 163
           R    VPI++ G KLDLR D     L +    I         ++I     +ECS+ T   
Sbjct: 109 RFAPNVPIVLVGTKLDLRDDKG--YLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166

Query: 164 VPDVFYYAQKAVLHP 178
           V  VF  A K VL P
Sbjct: 167 VKAVFDTAIKVVLQP 181

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 36/208 (17%)

Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL- 477
           +     +C+  G    GK+ +L  +    F  +Y PT  + ++ NV     G    L L 
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA--VDGQIVNLGLW 62

Query: 478 ----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGY 532
               QE  +    + LS + A    D+ +  +    + S++   +  + E+ R   +   
Sbjct: 63  DTAGQE--DYSRLRPLSYRGA----DIFVLAFSLISKASYENVLKKWMPELRRFAPN--- 113

Query: 533 GVPCLLIASKDDLKPYTMAVQDSAR-VTQELG------------IEPPIPVSMKSKD-LN 578
            VP +L+ +K DL+     + D    +T   G            IE     S K++  + 
Sbjct: 114 -VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE----CSSKTQQNVK 168

Query: 579 NVFSRIIWAAEHPHLNIPETETGRNRKR 606
            VF   I     P          +N +R
Sbjct: 169 AVFDTAIKVVLQPPRRKEVPRRRKNHRR 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 92.5 bits (230), Expect = 8e-22
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 22/186 (11%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV------- 61
           S   ++ VVVGD   GK+ L+ +  T + P +  P         D Y   V V       
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF------DNYSANVMVDGKPVNL 55

Query: 62  TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
            + DT+   +          + D  ++ ++    ++   + + W PE+R      PII+ 
Sbjct: 56  GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115

Query: 122 GCKLDLRGDHNATSLEEVMG--PIMQQ-----FREI--ETCVECSATTMIQVPDVFYYAQ 172
           G KLDLR D +     +     PI         +EI     +ECSA T   +  VF  A 
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

Query: 173 KAVLHP 178
           +AVL P
Sbjct: 176 RAVLCP 181

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-EE 483
           +C++ G    GK+ LL S+    F   Y PT  + Y+ NV     G    L L +   +E
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV--MVDGKPVNLGLWDTAGQE 64

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASK 542
              ++     +    DV++  +      S++  +     EV           P +L+ +K
Sbjct: 65  DYDRL--RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTK 118

Query: 543 DDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
            DL             K   +       + +E+G    +  S  ++  L  VF   I A 
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

Query: 589 EHP 591
             P
Sbjct: 179 LCP 181

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 92.6 bits (230), Expect = 9e-22
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 4   GSGSSSRTG------VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYP 56
           G+G SS         ++ VVVGD   GK+ L+ + A ++ PE+ VP V     +      
Sbjct: 4   GAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGG 63

Query: 57  DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV 116
            +  + + DT+   +            D  ++ ++    ++   +   W+PEL+     V
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNV 123

Query: 117 PIIVAGCKLDLRGDHNATSLEEVMG--PIMQQ-----FREI--ETCVECSATTMIQVPDV 167
           P ++ G ++DLR D    +    M   PI  +      +EI     VECSA T   +  V
Sbjct: 124 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183

Query: 168 FYYAQKAVLHP 178
           F  A  A+L P
Sbjct: 184 FDEAIIAILTP 194

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 32/188 (17%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            +C++ G    GK+ LL S+    F E Y PT  + YAV+V    GG +  L L     Q
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV--TVGGKQYLLGLYDTAGQ 76

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV-EVARLGEDSGYGVPCL 537
           E  +    + LS        DV +  +   +  S++  KE  V E+          VP L
Sbjct: 77  E--DYDRLRPLSYPMT----DVFLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFL 126

Query: 538 LIASKDDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSR 583
           LI ++ DL             K   + V+   ++ +E+G    +  S  ++  L  VF  
Sbjct: 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

Query: 584 IIWAAEHP 591
            I A   P
Sbjct: 187 AIIAILTP 194

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 92.1 bits (229), Expect = 2e-21
 Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
           M G         V+VV+VGD G GK+SL+   A        P  + PT    + Y   + 
Sbjct: 23  MAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADG----AFPESYTPTVF--ERYMVNLQ 76

Query: 61  V-------TIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
           V        I DT+          ++  R        A  ++L +     ++   + + W
Sbjct: 77  VKGKPVHLHIWDTAGQ--------DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRW 128

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQ-----FREIETC--VEC 156
            PE+     KVPIIV GCK DLR D +  +     G  P+         R +     +EC
Sbjct: 129 YPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188

Query: 157 SATTMIQVPDVFYYAQKAVLHP 178
           SA     V  VF  A +  L  
Sbjct: 189 SARLHDNVHAVFQEAAEVALSS 210

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 46/205 (22%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           S+  ++        + +L G    GK++LL  F +  F E+Y PT  E+Y VN+  Q  G
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL--QVKG 79

Query: 471 NKKTLIL-----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVA 524
               L +     Q+  +    + L   +A     V +  +D +   S+         EV 
Sbjct: 80  KPVHLHIWDTAGQD--DYDRLRPLFYPDA----SVLLLCFDVTSPNSFDNIFNRWYPEVN 133

Query: 525 RLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV-------------- 570
              +     VP +++  K DL+           +  +L      PV              
Sbjct: 134 HFCK----KVPIIVVGCKTDLR-------KDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182

Query: 571 -------SMKSKDLNNVFSRIIWAA 588
                  +    +++ VF      A
Sbjct: 183 VAYLECSARLHDNVHAVFQEAAEVA 207

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 89.4 bits (222), Expect = 8e-21
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 19/186 (10%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-----RLPPDFYPDRVP 60
           GS+     ++VVVGD   GK++L+   A +      P  + PT         +    R+ 
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKD----CFPENYVPTVFENYTASFEIDTQRIE 56

Query: 61  VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIV 120
           +++ DTS S             +DAV++ +  ++  TL  +   W  E++       +++
Sbjct: 57  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116

Query: 121 AGCKLDLRGDHNATSLEEVMG--PIMQQF-----REI--ETCVECSA-TTMIQVPDVFYY 170
            GCK DLR D +           P+         ++I   T +ECSA  +   V D+F+ 
Sbjct: 117 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

Query: 171 AQKAVL 176
           A  A +
Sbjct: 177 ATLACV 182

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----QE 479
           + ++ G    GK+ALL+ F +  F ENY PT  E Y  +   +    +  L L       
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF--EIDTQRIELSLWDTSGSP 66

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCLL 538
                  + LS  +     D  +  +D S   +     +    E+             LL
Sbjct: 67  --YYDNVRPLSYPD----SDAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLL 116

Query: 539 IASKDDL 545
           +  K DL
Sbjct: 117 VGCKSDL 123

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 89.4 bits (222), Expect = 1e-20
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 27/195 (13%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRV 59
           +P GS  ++    ++V+VGD   GK+ L+   + +  PE  VP V        +    +V
Sbjct: 15  VPRGSHMAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQV 73

Query: 60  PVTIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRR 111
            + + DT+          E+  R         D +++ ++ +   +L  +   W PE++ 
Sbjct: 74  ELALWDTAGQ--------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125

Query: 112 LEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVECSATTMI 162
               VPII+ G K DLR D +          E V     +     I     +ECSA T  
Sbjct: 126 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185

Query: 163 QVPDVFYYAQKAVLH 177
            V +VF  A +A L 
Sbjct: 186 GVREVFEMATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 22/192 (11%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
               +       ++ VVVGD   GK+ L+ +  T       P  + PT    D Y   V 
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN----AFPGEYIPTVF--DNYSANVM 72

Query: 61  V-------TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE 113
           V        + DT+   +          + D  ++ ++    ++   + + W PE+R   
Sbjct: 73  VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132

Query: 114 IKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVECSATTMIQV 164
              PII+ G KLDLR D +         L  +  P      +EI     +ECSA T   +
Sbjct: 133 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192

Query: 165 PDVFYYAQKAVL 176
             VF  A +AVL
Sbjct: 193 KTVFDEAIRAVL 204

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
           R    +    +    +C++ G    GK+ LL S+    F   Y PT  + Y+ NV     
Sbjct: 17  RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV--MVD 74

Query: 470 GNKKTLIL-----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV-EV 523
           G    L L     QE  +    + LS  +     DV +  +      S++  +     EV
Sbjct: 75  GKPVNLGLWDTAGQE--DYDRLRPLSYPQT----DVFLICFSLVSPASFENVRAKWYPEV 128

Query: 524 ARLGEDSGYGVPCLLIASKDDL 545
                      P +L+ +K DL
Sbjct: 129 RHHCP----NTPIILVGTKLDL 146

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 87.9 bits (218), Expect = 6e-20
 Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 34/195 (17%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVPVT 62
              S    ++VVVGD   GK+ L+   + +    + P V+ PT       D   D   V 
Sbjct: 19  YFQSMIRKKLVVVGDGACGKTCLLIVFSKD----EFPEVYVPTVFENYVADIEVDGKQVE 74

Query: 63  --IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRL 112
             + DT+          E+  R         D +++ ++ +   +L  +   W+PE++  
Sbjct: 75  LALWDTAGQ--------EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126

Query: 113 EIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQ-----FREI--ETCVECSATTMIQ 163
              VPII+   K DLR D +  +        P+           I     +ECSA T   
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186

Query: 164 VPDVFYYAQKAVLHP 178
           V +VF  A +A L  
Sbjct: 187 VREVFETATRAALQK 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 42/190 (22%), Positives = 64/190 (33%), Gaps = 46/190 (24%)

Query: 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----QEI 480
            ++ G    GK+ LL  F +  F E Y PT  E Y  ++  +  G +  L L     QE 
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI--EVDGKQVELALWDTAGQE- 84

Query: 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCLLI 539
            +    + LS  +     DV +  +      S +   E  + EV          VP +L+
Sbjct: 85  -DYDRLRPLSYPDT----DVILMCFSVDSPDSLENIPEKWVPEVKHFCP----NVPIILV 135

Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPV---------------------SMKSKDLN 578
           A+K DL+           V  EL      PV                     +   + + 
Sbjct: 136 ANKKDLR-------SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188

Query: 579 NVFSRIIWAA 588
            VF     AA
Sbjct: 189 EVFETATRAA 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 87.1 bits (216), Expect = 9e-20
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 37/201 (18%)

Query: 1   MPGGSGSSSRTGVR--VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFY 55
           +P GS       V+  +VVVGD   GK++L+   A +      P  + PT        F 
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD----CFPENYVPTVFENYTASFE 70

Query: 56  PDRVPVT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
            D   +   + DTS S                     +DAV++ +  ++  TL  +   W
Sbjct: 71  IDTQRIELSLWDTSGS--------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVEC 156
             E++       +++ GCK DLR D +            V         ++I   T +EC
Sbjct: 123 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182

Query: 157 SA-TTMIQVPDVFYYAQKAVL 176
           SA  +   V D+F+ A  A +
Sbjct: 183 SALQSENSVRDIFHVATLACV 203

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            + ++ G    GK+ALL+ F +  F ENY PT  E Y  +   +    +  L L      
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF--EIDTQRIELSLWDTSGS 86

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCL 537
                   + LS  ++    D  +  +D S   +     +    E+             L
Sbjct: 87  P--YYDNVRPLSYPDS----DAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKML 136

Query: 538 LIASKDDL 545
           L+  K DL
Sbjct: 137 LVGCKSDL 144

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           G   + +  +++VVVGD   GK+ L+ A +   +P      + PT               
Sbjct: 15  GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPT----AYVPTVFENFSHVMKYKNEE 70

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
               + DT+          EE  R        +D V+L +A N +++   +S+ W PE++
Sbjct: 71  FILHLWDTAGQ--------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122

Query: 111 RLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFREI--ETCVECSATTMIQVPDV 167
                   ++ G K+DLR D +   + +E         +++     +E S+   I + +V
Sbjct: 123 HYIDTAKTVLVGLKVDLRKDGSDDVTKQE----GDDLCQKLGCVAYIEASSVAKIGLNEV 178

Query: 168 FYYAQKAVLHP 178
           F  +   +   
Sbjct: 179 FEKSVDCIFSN 189

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 26/201 (12%)

Query: 403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV 462
           A+      +    K +  +   + ++ G    GK+ LL +F +      Y PT  E ++ 
Sbjct: 3   AMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62

Query: 463 NVVDQPGGNKKTLIL-----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK 517
            +  +    +  L L     QE  E    + LS  ++    DV +  +  ++  S+    
Sbjct: 63  VM--KYKNEEFILHLWDTAGQE--EYDRLRPLSYADS----DVVLLCFAVNNRTSFDNIS 114

Query: 518 EL-LVEVARLGEDSGYGVPCLLIASKDDL-----KPYTMAVQDSARVTQELGIEPPIPVS 571
                E+    +        +L+  K DL        T   Q+   + Q+LG    I  S
Sbjct: 115 TKWEPEIKHYID----TAKTVLVGLKVDLRKDGSDDVT--KQEGDDLCQKLGCVAYIEAS 168

Query: 572 MKSKD-LNNVFSRIIWAAEHP 591
             +K  LN VF + +      
Sbjct: 169 SVAKIGLNEVFEKSVDCIFSN 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 84.9 bits (210), Expect = 7e-19
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 11/190 (5%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV 61
           G +        ++V+VGD   GK++++   A +  P   VP V        +    RV +
Sbjct: 18  GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVEL 77

Query: 62  TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
           ++ DTS S             +DAV+L +  ++  T+      W  E+        +++ 
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137

Query: 122 GCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVECSA-TTMIQVPDVFYYA 171
           GCK DLR D +            +         +++  E  +E SA T+   +  +F  A
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197

Query: 172 QKAVLHPTAP 181
               L+  +P
Sbjct: 198 SMLCLNKPSP 207

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 33/189 (17%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            + +L G    GK+A+L    +  + E Y PT  E Y   +  +    +  L L      
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL--ETEEQRVELSLWDTSGS 85

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCL 537
                   + L   +     D  +  +D S   +     +    E+             L
Sbjct: 86  P--YYDNVRPLCYSD----SDAVLLCFDISRPETVDSALKKWRTEILDYCPS----TRVL 135

Query: 538 LIASKDDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD--LNNVFS 582
           LI  K DL             K   ++ +    + ++LG E  +  S  + +  ++++F 
Sbjct: 136 LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195

Query: 583 RIIWAAEHP 591
                  + 
Sbjct: 196 TASMLCLNK 204

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 73.1 bits (179), Expect = 4e-14
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 10/188 (5%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR-V 59
                  +++  ++ VVVGD   GK+ L+ +  T + P +  P              + V
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 203

Query: 60  PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
            + + DT+   +          + D  ++ ++    ++   + + W PE+R      PII
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII 263

Query: 120 VAGCKLDLRGDHNATS--LEEVMGPIMQQF-----REIETC--VECSATTMIQVPDVFYY 170
           + G KLDLR D +      E+ + PI         +EI     +ECSA T   +  VF  
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

Query: 171 AQKAVLHP 178
           A +AVL P
Sbjct: 324 AIRAVLCP 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 69/451 (15%), Positives = 128/451 (28%), Gaps = 134/451 (29%)

Query: 282 KFGYGDDLE-LRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDN-----DGAVRP 335
           ++ Y D L    D F+        +   +   +  +  + I    +ID+     D     
Sbjct: 15  QYQYKDILSVFEDAFVD-------NFDCK---DVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFV-SKWALMTLLDPRHSLANLIYV 394
             L    L+  E        +   E     N     F+ S         P  S+   +Y+
Sbjct: 65  LRLFWTLLSKQEEM-----VQKFVEEVLRINY---KFLMSPIKTEQR-QP--SMMTRMYI 113

Query: 395 GY------GGDPAAALRVTRKRSVDR-----KKQQTERNVFRCLLFGPQNAGKSAL---- 439
                        A   V+R +   +      + +  +NV    + G   +GK+ +    
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGKTWVALDV 170

Query: 440 LNSF-LERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498
             S+ ++            + + +N+      N  +        E V ++L         
Sbjct: 171 CLSYKVQCKMD-------FKIFWLNL-----KNCNS-------PETVLEMLQKLLYQIDP 211

Query: 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI----ASKDDLKPYTM---- 550
           + T    D S      R   +  E+ RL +   Y   CLL+     +      + +    
Sbjct: 212 NWTSRS-DHSSNIK-LRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 551 -------AVQD--SARVTQELGIEPPIP--------------VSMKSKDL-------NNV 580
                   V D  SA  T  + ++                  +  + +DL       N  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 581 FSRIIWAAEHPHLNIPET--------------------ETGRNRKRYRHLVNSSLVFVSG 620
              II  +    L   +                     E    RK +  L     VF   
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFPPS 384

Query: 621 VPV---LLLLYFLHMHTWTCIVLITILHIYS 648
             +   LL L +  +     +V++  LH YS
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 84/559 (15%), Positives = 139/559 (24%), Gaps = 163/559 (29%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTI---IDT 66
           R    V++ G  G+GK+ +          +              F+     + +      
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-------FW-----LNLKNCNSP 195

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
            + LE   KL  ++        T   +  S +         ELRRL    P     C L 
Sbjct: 196 ETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLV 249

Query: 127 LRGDHNATSLEEVMGP-IMQQFREIETCVECS--ATTM-IQVPDVFYYAQKAVLHPTAPL 182
           L           V        F      + C    TT   QV D                
Sbjct: 250 LL---------NVQNAKAWNAFN-----LSCKILLTTRFKQVTDF--------------- 280

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQ--PAEIVGVKR 240
                       + A     I  DH     L   E+    +K  +   Q  P E+     
Sbjct: 281 ------------LSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREV----- 322

Query: 241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET-TWAVLRKFGYGDDL-ELRDDFLPV 298
                           L+      ++  E  R    TW   +     D L  + +  L  
Sbjct: 323 ----------------LTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSL-- 363

Query: 299 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAE-LEDLFLTAPESPWDEAPYKD 357
              L P    E           +F         A  P   L  +        W +    D
Sbjct: 364 -NVLEPA---EYRKMFDRL--SVF------PPSAHIPTILLSLI--------WFDVIKSD 403

Query: 358 AAETTALGNLTLKGFVSKWA------LMTL-LDPRHSLANLIYV------GYGGDPAAAL 404
                    L     V K        + ++ L+ +  L N   +       Y        
Sbjct: 404 VMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-------- 453

Query: 405 RVTRKRSVDRKKQQTERN-VFRCL---LFGPQNAGKSAL-----LN-SFLERPFSENYAP 454
            + +    D           +  +   L   ++  +  L     L+  FLE+    +   
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 455 TTGEQYAVNVVDQPGGNKKTLILQE-IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW 513
                  +N + Q    K  +   +   E  V  IL     L   +  +     +D    
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTD---- 566

Query: 514 KRTKELLVEVARLGEDSGY 532
                 L+ +A + ED   
Sbjct: 567 ------LLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 4e-08
 Identities = 75/510 (14%), Positives = 143/510 (28%), Gaps = 139/510 (27%)

Query: 207 HDMDGALNDAELNEFQVKC----------FNAPLQPAEIVG-VKRVVQEKQHDGVNDLGL 255
           H MD      E  E Q +           F       ++    K ++ +++ D +     
Sbjct: 5   HHMD-----FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 256 TLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAV 315
            +SG L L    + K        +++KF   + L +   FL  P K    Q   +    +
Sbjct: 60  AVSGTLRLFWTLLSKQE-----EMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVS- 374
           E    ++      ND  V         ++  +      PY       AL  L     V  
Sbjct: 114 EQRDRLY------NDNQV----FAKYNVSRLQ------PYLKL--RQALLELRPAKNVLI 155

Query: 375 -------KW--ALMTLLDPR--HSLANLIY---VGYGGDPAAALRVTRKRSVDRKKQQTE 420
                  K   AL   L  +    +   I+   +     P   L + +K         T 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------YAP--------------TTGEQ 459
           R+     +    ++ ++ L      +P+                           TT  +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 460 YAVNVVDQPGGNKKTLILQEIPEEG-----VKKILSN----------KEA-----LASCD 499
               V D       T I  +          VK +L            +E           
Sbjct: 276 ---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--- 329

Query: 500 VTIFVYDSSDEYS-WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV 558
           ++I      D  + W   K +  +  +L          ++ +S + L+P         ++
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCD--KLTT--------IIESSLNVLEPAEYR-----KM 374

Query: 559 TQELGIEP---PIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSL 615
              L + P    IP          + S +IW       ++ +++          L   SL
Sbjct: 375 FDRLSVFPPSAHIPTI--------LLS-LIWF------DVIKSDV---MVVVNKLHKYSL 416

Query: 616 VFVSGVPVLLLLYFLHMHTWTCIVLITILH 645
           V        + +  +++     +     LH
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALH 446

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 26/175 (14%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-- 468
           +++   ++     F+ + +GP  +GK+    + L+  +S+      GE  ++   D+   
Sbjct: 5   TINFANREIN---FKIVYYGPGLSGKT----TNLKWIYSKVPEGRKGEMVSLATEDERTL 57

Query: 469 GGNKKTLILQEIPEEGVK----------KILSN-KEALASCDVTIFVYDSSDEYSWKRTK 517
             +   L + E+     +             ++ K  L   D  +FV DS+        +
Sbjct: 58  FFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAE 117

Query: 518 EL--LVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV 570
            +  + E       +   VP ++  +K DL P  + V+    V   +  E   PV
Sbjct: 118 SMRNMRENLAEYGLTLDDVPIVIQVNKRDL-PDALPVEM---VRAVVDPEGKFPV 168

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 24/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V++VG+ G GKS+L                H P   P D Y      D+  VT  + D 
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSA----HEPE-NPEDTYERRIMVDKEEVTLVVYDI 79

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +  G L +  L+  DA ++ ++   + + S++    L  LR       +P+I+ G 
Sbjct: 80  WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGN 138

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       SLEE      +      +C  +E SA       ++F 
Sbjct: 139 KSDLA-RSREVSLEEG-----RHLAGTLSCKHIETSAALHHNTRELFE 180

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI-- 480
           +F+ +L G    GKS L  +F        + P   E      +     +K+ + L  +  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV---DKEEVTLV-VYD 78

Query: 481 ---PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                +    +  +   L + D  + V+  +D  S+ +  E L+ +          +P +
Sbjct: 79  IWEQGDAGGWLRDH--CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVI 134

Query: 538 LIASKDDL 545
           L+ +K DL
Sbjct: 135 LVGNKSDL 142

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENYAPTTGEQYAVNV 464
                    + ++   ++ GPQN+GK++LL               E  +    +   V +
Sbjct: 39  GGSGGGGSYQPSI---IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTL 95

Query: 465 VDQPGGNK-KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS-DEYSWKRTKELLVE 522
           VD PG  K +  +   +           K         IF+ DS+ D      T E LV+
Sbjct: 96  VDFPGHVKLRYKLSDYL-----------KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 144

Query: 523 VARLGEDSG-YGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565
           +  + E S   G+  L+  +K +L     A    +++   L  E
Sbjct: 145 ILSITESSCENGIDILIACNKSELF---TAR-PPSKIKDALESE 184

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 15/154 (9%)

Query: 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKT 474
            ++ ++R V   L  G  ++GK+ L    L   + +    +  +     +         +
Sbjct: 2   ARKSSQRAV---LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDS--SAIYKVNNNRGNS 55

Query: 475 LILQEIPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSG 531
           L L ++P  G + +         +S    +FV DS+      +   E L +V        
Sbjct: 56  LTLIDLP--GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 113

Query: 532 YGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565
                L+  +K D+    MA   +  + Q+L  E
Sbjct: 114 NSPSLLIACNKQDIA---MAK-SAKLIQQQLEKE 143

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 37/172 (21%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V +VG+  +GKS+L+    T +  ++     +P       +      D       I D 
Sbjct: 22  KVGIVGNLSSGKSALVHRYLTGTYVQE----ESPEG---GRFKKEIVVDGQSYLLLIRDE 74

Query: 67  SSSLENKGKLNEE---LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVA 121
                       E       DAVV  ++   + +   + + +   L       +VP+++ 
Sbjct: 75  GGP--------PELQFAAWVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLV 125

Query: 122 GCKLDLRGDHN-ATSLEEVMGPIMQQF-REIETC--VECSATTMIQVPDVFY 169
           G +  +   +              ++   +++ C   E  AT  + V  VF 
Sbjct: 126 GTQDAISAANPRVIDDSRA-----RKLSTDLKRCTYYETCATYGLNVERVFQ 172

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 41/153 (26%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------GEQ 459
            S  R+    +    +  + G  ++GKSAL++ +L   + +  +P            G+ 
Sbjct: 7   HSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66

Query: 460 YAVNVVDQPGGNKKTLILQE-----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK 514
           Y + + D+ G                  + V                +FV+   DE S++
Sbjct: 67  YLLLIRDEGG--------PPELQFAAWVDAV----------------VFVFSLEDEISFQ 102

Query: 515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547
                 + +      S   VP +L+ ++D +  
Sbjct: 103 TVYNYFLRLCSFRNAS--EVPMVLVGTQDAISA 133

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 29/161 (18%)

Query: 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLER------PFSENYAPTTGEQYAVNVVDQP 468
           K++  + ++   ++ GPQN+GK++LL               E  +    +   V +VD P
Sbjct: 7   KQKSYQPSI---IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFP 63

Query: 469 GGNKKTLILQEIPEEGVKKILSN--KEALASCDVTIFVYDSS-DEYSWKRTKELLVEVAR 525
           G  K            ++  LS+  K         IF+ DS+ D      T E LV++  
Sbjct: 64  GHVK------------LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 111

Query: 526 LGEDSG-YGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565
           + E S   G+  L+  +K +L     A    +++   L  E
Sbjct: 112 ITESSCENGIDILIACNKSELF---TAR-PPSKIKDALESE 148

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V++VG+ G GKS+L                H       D Y      D+  VT  + D 
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDH----AHEME-NSEDTYERRIMVDKEEVTLIVYDI 58

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +  G L +  L+  DA ++ ++   + + S++    L  LR       +P+I+ G 
Sbjct: 59  WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGN 117

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       SLEE      +      +C  +E SA       ++F 
Sbjct: 118 KSDLA-RSREVSLEEG-----RHLAGTLSCKHIETSAALHHNTRELFE 159

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI-- 480
           VF+ +L G    GKS L  +F        +     E      +     +K+ + L  +  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV---DKEEVTLI-VYD 57

Query: 481 ---PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                +    +  +   L + D  + V+  +D  S+ +  E L+ +          +P +
Sbjct: 58  IWEQGDAGGWLQDH--CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVI 113

Query: 538 LIASKDDL 545
           L+ +K DL
Sbjct: 114 LVGNKSDL 121

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 26/169 (15%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDT 66
           RVV++GD G GK+SL +  A +   +     H       D Y   + V        ++DT
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDL----HEQL--GEDVYERTLTVDGEDTTLVVVDT 59

Query: 67  SSSLENKGKLNEEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAG 122
             + +     ++E   +   A V+ Y+   + +    S     +LRR      VPII+ G
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVG 118

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            K DL       S+EE      +    +  C  +E SAT    V ++F 
Sbjct: 119 NKADLA-RCREVSVEEG-----RACAVVFDCKFIETSATLQHNVAELFE 161

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGN 471
           ++R +L G    GK++L + F  +   + +               GE   + VVD     
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE-- 61

Query: 472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
                  E  ++      S +  L      + VY  +D  S++   EL +++ R  +   
Sbjct: 62  ------AEKLDK----SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQAD- 110

Query: 532 YGVPCLLIASKDDL 545
             VP +L+ +K DL
Sbjct: 111 -HVPIILVGNKADL 123

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 37/175 (21%)

Query: 14  RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           RVV++G++G GKS+L    A   +S+      +        D Y     + +   S+++ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE------DTY--ERTLMVDGESATII 59

Query: 72  NKGKLN-------EE------LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKV 116
               L+        E      ++  DA ++ Y+   +++  + S     +LRR      +
Sbjct: 60  ---LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDI 115

Query: 117 PIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
           PII+ G K DL      +  E          +F      +E SA     V ++F 
Sbjct: 116 PIILVGNKSDLVRXREVSVSEGRAXAVVFDXKF------IETSAAVQHNVKELFE 164

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 26/133 (19%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGNK 472
               + G + AGKSAL   FL + F   Y P              +   + V+D      
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTAD--- 78

Query: 473 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGY 532
                 + P    ++ L+   A       + VY      S+  +   L  +A   +++  
Sbjct: 79  -----LDTP-RNCERYLNWAHAF------LVVYSVDSRQSFDSSSSYLELLALHAKETQR 126

Query: 533 GVPCLLIASKDDL 545
            +P LL+ +K D+
Sbjct: 127 SIPALLLGNKLDM 139

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DR 58
                    V + ++G RG GKS+L     T+    +    + P     D Y      D 
Sbjct: 13  NLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISE----YDPN--LEDTYSSEETVDH 66

Query: 59  VPVT--IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK- 115
            PV   ++DT+   +        L  A A ++ Y+ + + +    SSY   EL  L  K 
Sbjct: 67  QPVHLRVMDTADL-DTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYL--ELLALHAKE 123

Query: 116 ----VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSA-TTMIQVPDVF 168
               +P ++ G KLD+   +   +  E              C   E SA      V  VF
Sbjct: 124 TQRSIPALLLGNKLDMA-QYRQVTKAEG-----VALAGRFGCLFFEVSACLDFEHVQHVF 177

Query: 169 Y 169
           +
Sbjct: 178 H 178

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 40/191 (20%)

Query: 1   MPGGSGSSSRTGV---RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFY 55
           M   S  SS +G    RVV++G++G GKS+L    A   +S+      +        D Y
Sbjct: 23  MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTY 76

Query: 56  PDRVPVTIIDTSSSLENKGKLN-------EE------LKRADAVVLTYACNQQSTLSRLS 102
                + +   S+++     L+        E      ++  DA ++ Y+   +++  + S
Sbjct: 77  --ERTLMVDGESATII---LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKAS 131

Query: 103 SYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSA 158
                +LRR      +PII+ G K DL       S+ E      +    +  C  +E SA
Sbjct: 132 E-LRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEG-----RACAVVFDCKFIETSA 184

Query: 159 TTMIQVPDVFY 169
                V ++F 
Sbjct: 185 AVQHNVKELFE 195

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 24/134 (17%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL-- 477
           N +R  +FG    GKS+L+  F++  F E+Y PT  + Y   +  D    +  TL I   
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD---KSICTLQITDT 58

Query: 478 --QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
                   +    +                I VY  +   S +  K +  ++  +  D  
Sbjct: 59  TGSHQFPAMQRLSIS----------KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 108

Query: 532 YGVPCLLIASKDDL 545
             +P +L+ +K D 
Sbjct: 109 S-IPIMLVGNKCDE 121

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           RV V G  G GKSSL+      +  E     + PT    D Y            + I DT
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTV--EDTYRQVISCDKSICTLQITDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGC 123
           + S +        + +  A +L Y+   + +L  L      ++  +      +PI++ G 
Sbjct: 59  TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGN 117

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K D           E      +       C  +E SA     V ++F 
Sbjct: 118 KCDES-PSREVQSSEA-----EALARTWKCAFMETSAKLNHNVKELFQ 159

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 30/193 (15%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
              G        ++V ++GD   GK+SL+     E+   K    H       +    + P
Sbjct: 30  RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGL-----NVVTKQAP 84

Query: 61  VTIIDTSSSLENKGKLN-------EE--------LKRADAVVLTYACNQQSTLSRLSSYW 105
                 +     +   +       E         + R+   +L       S       YW
Sbjct: 85  NIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH----YW 140

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE-TCVECSATTMIQV 164
           L  + +   K P+IV   K+D    +N    +     I ++F  IE      S      V
Sbjct: 141 LRHIEKYGGKSPVIVVMNKIDENPSYNIEQKK-----INERFPAIENRFHRISCKNGDGV 195

Query: 165 PDVFYYAQKAVLH 177
             +    + AVLH
Sbjct: 196 ESIAKSLKSAVLH 208

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 35/166 (21%)

Query: 409 KRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG-----EQYAVN 463
           + +  + +        +  L G   AGK++LL   +   F    + T G     +Q    
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 464 VVDQPGGNKKTLIL-------QEIPEEGVKKILSNKEALASC-----DVTIFVYDSSDEY 511
              +     K  +        QEI             A          V + + DS    
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIM-----------HASHQFFMTRSSVYMLLLDSR--- 132

Query: 512 SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSAR 557
           +       L  + + G  S    P +++ +K D  P     Q    
Sbjct: 133 TDSNKHYWLRHIEKYGGKS----PVIVVMNKIDENPSYNIEQKKIN 174

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL-- 477
           N +R ++FG    GKS+L+  F++  F + Y PT  + Y   +  D    +  TL I   
Sbjct: 7   NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCD---KSVCTLQITDT 63

Query: 478 --QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
                   +    +                I V+  + + S +    +   + ++ + S 
Sbjct: 64  TGSHQFPAMQRLSIS----------KGHAFILVFSVTSKQSLEELGPIYKLIVQI-KGSV 112

Query: 532 YGVPCLLIASKDDL 545
             +P +L+ +K D 
Sbjct: 113 EDIPVMLVGNKCDE 126

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           RVVV G  G GKSSL+      +  +     + PT    D Y            + I DT
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDT----YIPTIE--DTYRQVISCDKSVCTLQITDT 63

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGC 123
           + S +        + +  A +L ++   + +L  L       + ++      +P+++ G 
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGN 122

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K D           E      Q   +   C  +E SA     V ++F 
Sbjct: 123 KCDE--TQREVDTREA-----QAVAQEWKCAFMETSAKMNYNVKELFQ 163

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 35/179 (19%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPV 61
             S   +R+ V+GD  +GKSSLI    T S                + Y      D    
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES-------EQYKKEMLVDGQTH 54

Query: 62  T--IIDTSSSLENKGKLNEE---LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK- 115
              I + + +         +      ADAV+  ++   +++   +S     +L  L  + 
Sbjct: 55  LVLIREEAGA--------PDAKFSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEG 105

Query: 116 -----VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
                + ++    ++                      R   +  E  AT  + V  VF 
Sbjct: 106 RGGLALALVGTQDRISA-SSPRVVGDARARALXADMKR--CSYYETXATYGLNVDRVFQ 161

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 27/168 (16%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V+++G  G GKS+L                 A        Y      D    +  + D 
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGP-----EAEA--AGHTYDRSIVVDGEEASLMVYDI 56

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +    L    +   DA V+ Y+   + +  + S     +LRR      VPII+ G 
Sbjct: 57  WEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGN 114

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       S++E      +    +  C  +E SA     V  +F 
Sbjct: 115 KSDLV-RSREVSVDEG-----RACAVVFDCKFIETSAALHHNVQALFE 156

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 428 LFGPQNAGKSALLNSFLERPFSE--NYAPTT----------GEQYAVNVVDQPGGNKKTL 475
           + G +N GKS+ +N+ + +  S   +YA TT               V +VD PG +    
Sbjct: 39  VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG- 97

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP 535
              E+    V+K    +      D  I V DS+          L  E+          +P
Sbjct: 98  ---ELGRLRVEKA---RRVFYRADCGILVTDSAPTPYEDDVVNLFKEM---------EIP 142

Query: 536 CLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            +++ +K D+       ++   + +       + VS   K   +++   I 
Sbjct: 143 FVVVVNKIDVLG--EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTIS 191

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 24/187 (12%), Positives = 56/187 (29%), Gaps = 55/187 (29%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTI-IDTSS-SL 70
           +++VG+ G+GK++L+                   +L      D      T+ ID     +
Sbjct: 5   LMIVGNTGSGKTTLL------------------QQLMKTKKSDLGMQSATVGIDVKDWPI 46

Query: 71  ENKGKLNEELK---------------------RADAVVLTY-ACNQQSTLSRLSSYWLPE 108
           + + K   +L                      +    +  Y     Q+ +  +   WL  
Sbjct: 47  QIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMK-PWLFN 105

Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-------IETCVECSATTM 161
           ++      P+I+ G  LD+  +      +  M  I ++           +     +    
Sbjct: 106 IKARASSSPVILVGTHLDVSDEK---QRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162

Query: 162 IQVPDVF 168
             +  + 
Sbjct: 163 DALAKLR 169

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 33/158 (20%)

Query: 398 GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG 457
           G P  +      ++           + + ++ G    GKSAL   F+   F E+Y PT  
Sbjct: 1   GSPGISGGGGGSQNSLA--------LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 52

Query: 458 EQYAVNV-VDQPGGNKKTL-IL----QE----IPEEGVKKILSNKEALASCDVTIFVYDS 507
           + Y   V +D   G +  + IL    QE    I +   +          S +  + V+  
Sbjct: 53  DSYRKKVVLD---GEEVQIDILDTAGQEDYAAIRDNYFR----------SGEGFLCVFSI 99

Query: 508 SDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
           ++  S+  T +   ++ R+ ED    VP LL+ +K DL
Sbjct: 100 TEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDL 135

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 24/179 (13%)

Query: 2   PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP----- 56
            GG   +S    +V++VG  G GKS+L      +   E     + PT+   D Y      
Sbjct: 8   GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVED----YEPTK--ADSYRKKVVL 61

Query: 57  --DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-- 112
             + V + I+DT+   +     +   +  +  +  ++  +  + +  +  +  ++ R+  
Sbjct: 62  DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKE 120

Query: 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           +  VP ++ G K DL  D    S+EE      +   E      VE SA T   V  VF+
Sbjct: 121 DENVPFLLVGNKSDLE-DKRQVSVEEA-----KNRAEQWNVNYVETSAKTRANVDKVFF 173

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 15/169 (8%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAA----AATESVPEKVPPVHAPTRLPPDFYPDRVPVTII 64
             + + V V G+ G+GKSS I         E    K   V       P  +P+   V   
Sbjct: 66  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125

Query: 65  DTSSSLENKGKLNEELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
           D           +  L+       D  ++  A   +     +       +  ++ +   +
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDI----AKAISMMKKEFYFV 181

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
                 D+  + +          ++Q  R    CV       I  P +F
Sbjct: 182 RTKVDSDITNEADGEPQTFDKEKVLQDIR--LNCVNTFRENGIAEPPIF 228

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 26/146 (17%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
                 +   +    +  +FG    GKSAL+  FL + F   Y PT    Y         
Sbjct: 15  TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY--------- 65

Query: 470 GNKKTLILQEIPEEGVK-KIL---------SNKEALASCDVTIFVYDSSDEYSWKRTKEL 519
             +       I +E V  +IL           +  +   +  + VYD +D  S++    L
Sbjct: 66  --RHQA---TIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPL 120

Query: 520 LVEVARLGEDSGYGVPCLLIASKDDL 545
              +  + +     V  +L+ +K DL
Sbjct: 121 KNILDEIKKPK--NVTLILVGNKADL 144

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VV+G  G GKS+L          EK    + PT    D Y         +  + I+DT
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTI--EDSYRKQVEVDCQQCMLEILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           + + +     +  +K      L Y+   QST + L      ++ R+     VP+I+ G K
Sbjct: 59  AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
            DL  D      E+    + +Q+      +E SA + I V ++FY
Sbjct: 118 CDLE-DERVVGKEQGQN-LARQWCNCA-FLESSAKSKINVNEIFY 159

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA--VNVVDQPGGNKKTLILQEIP 481
           ++ ++ G    GKSAL   F++  F E Y PT  + Y   V V      + +  +L+ + 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV------DCQQCMLEILD 57

Query: 482 EEGVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
             G ++  + ++  + +      VY  + + ++   ++L  ++ R+ +     VP +L+ 
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVG 115

Query: 541 SKDDL 545
           +K DL
Sbjct: 116 NKCDL 120

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSF-LERPFSENYAPTTGEQYAVNVVDQPGGNK 472
           R  ++        L  G  N+GK+ ++N        S+N  PT G  +++        + 
Sbjct: 17  RGSKE-----VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS---SS 66

Query: 473 KTLILQEIPEEGVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
            +  + ++   G  +  +  +         IFV DSSD       KE L  +    +   
Sbjct: 67  LSFTVFDM--SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124

Query: 532 YGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563
             +P L  A+K DL    +       V+Q L 
Sbjct: 125 RRIPILFFANKMDL-RDAVTSVK---VSQLLC 152

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 25/133 (18%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL--- 477
           + + ++ G    GKSAL   F+   F E+Y PT  + Y   V +D   G +  + IL   
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD---GEEVQIDILDTA 60

Query: 478 -QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGY 532
            QE    I +   +          S +  + V+  ++  S+  T +   ++ R+ ED   
Sbjct: 61  GQEDYAAIRDNYFR----------SGEGFLCVFSITEMESFAATADFREQILRVKEDE-- 108

Query: 533 GVPCLLIASKDDL 545
            VP LL+ +K DL
Sbjct: 109 NVPFLLVGNKSDL 121

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 28/146 (19%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERP--FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
             +  + G    GKSAL++ F  +   F ++YA T+G +  V            +    I
Sbjct: 20  RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV----------APV---TI 66

Query: 481 PEEGVK-KILSN----KE---ALAS-----CDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
           P+  V  ++        +      S         I V+D S   S++  K     +    
Sbjct: 67  PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR 126

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQ 553
            D    +  +L+A+K DL P    V+
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQVR 152

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 37/141 (26%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL- 477
               + ++ G    GKSAL   F++  F  +Y PT  + Y     VD   G    L IL 
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVD---GIPARLDILD 63

Query: 478 ---QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVA 524
              QE    + E       G                 + V+  +D  S+    +L  ++ 
Sbjct: 64  TAGQEEFGAMREQYMRAGHGF----------------LLVFAINDRQSFNEVGKLFTQIL 107

Query: 525 RLGEDSGYGVPCLLIASKDDL 545
           R+ +      P +L+ +K DL
Sbjct: 108 RVKDRD--DFPVVLVGNKADL 126

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VVVG  G GKS+L                + PT    D Y            + I+DT
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTI--EDSYTKICSVDGIPARLDILDT 64

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E      + ++     +L +A N + + + +      ++ R+      P+++ G K
Sbjct: 65  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNK 123

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL          E        F         E SA   + V + F 
Sbjct: 124 ADLE-SQRQVPRSEA-----SAFGASHHVAYFEASAKLRLNVDEAFE 164

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 40/152 (26%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY--AVNVVDQ 467
           R     +  TE  +   ++ G    GKSAL    ++  F + Y PT  + Y   V +  +
Sbjct: 11  RENLYFQGMTEYKL---VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 67

Query: 468 PGGNKKTLIL----QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSW 513
                   IL    QE    + +      EG                 + V+  ++  S+
Sbjct: 68  TC---LLDILDTAGQEEYSAMRDQYMRTGEGF----------------LCVFAINNSKSF 108

Query: 514 KRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
                   ++ R+ +     VP +L+ +K DL
Sbjct: 109 ADINLYREQIKRVKDSD--DVPMVLVGNKCDL 138

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIIDT 66
           ++VVVG  G GKS+L          ++    + PT    D Y        +   + I+DT
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDE----YDPTI--EDSYRKQVVIDGETCLLDILDT 76

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   + + ++  +  +++R+     VP+++ G K
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNK 135

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL         ++       +  +      +E SA T   V D FY
Sbjct: 136 CDL--PTRTVDTKQA-----HELAKSYGIPFIETSAKTRQGVEDAFY 175

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 37/138 (26%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
           ++ ++ G    GKSAL    ++  F +   PT  + Y   V +D   G    L IL    
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVID---GETCLLDILDTAG 60

Query: 478 QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
           QE    + +      EG                 + V+  ++  S++   +   ++ R+ 
Sbjct: 61  QEEYSAMRDQYMRTGEGF----------------LCVFAINNTKSFEDIHQYREQIKRVK 104

Query: 528 EDSGYGVPCLLIASKDDL 545
           +     VP +L+ +K DL
Sbjct: 105 DSD--DVPMVLVGNKSDL 120

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VVVG  G GKS+L          ++      PT    D Y        +   + I+DT
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDE----CDPTI--EDSYRKQVVIDGETCLLDILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   +   +   +  +++R+     VP+++ G K
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL          +      Q          +E SA T   V D FY
Sbjct: 118 SDL--AARTVESRQA-----QDLARSYGIPYIETSAKTRQGVEDAFY 157

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIIDT 66
           ++VVVG  G GKS+L          ++    + PT    D Y        +   + I+DT
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDE----YDPTI--EDSYRKQVVIDGETCLLDILDT 59

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   +   +   +  +++R+     VP+++ G K
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNK 118

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL         ++      Q          +E SA T   V D FY
Sbjct: 119 CDL--PSRTVDTKQA-----QDLARSYGIPFIETSAKTRQGVDDAFY 158

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 47/143 (32%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGNK 472
           ++ ++ G    GKSAL    ++  F + Y PT            GE   ++++D  G   
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG--- 61

Query: 473 KTLILQE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVE 522
                QE    + +      EG                 + V+  ++  S++       +
Sbjct: 62  -----QEEYSAMRDQYMRTGEGF----------------LCVFAINNTKSFEDIHHYREQ 100

Query: 523 VARLGEDSGYGVPCLLIASKDDL 545
           + R+ +     VP +L+ +K DL
Sbjct: 101 IKRVKDSE--DVPMVLVGNKCDL 121

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 25/132 (18%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
           ++ ++ G    GKSAL   F+   F E Y PT  + Y   + VD    +   L IL    
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVD---SSPSVLEILDTAG 60

Query: 478 QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG 533
            E    + +  +K          +    I VY   ++ S++  K +  ++ R+       
Sbjct: 61  TEQFASMRDLYIK----------NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE--K 108

Query: 534 VPCLLIASKDDL 545
           VP +L+ +K DL
Sbjct: 109 VPVILVGNKVDL 120

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 24/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +VVV+G  G GKS+L     T +  EK    + PT    DFY      D  P    I+DT
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEK----YDPTI--EDFYRKEIEVDSSPSVLEILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           + + +     +  +K     +L Y+   Q +   +      ++ R+    KVP+I+ G K
Sbjct: 59  AGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           +DL       S  E      +   E   C  +E SA +   V ++F 
Sbjct: 118 VDLE-SEREVSSSEG-----RALAEEWGCPFMETSAKSKTMVDELFA 158

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G   AGK+ +L             PT G  + V  V+          + ++   
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY---KNICFTVWDV--G 81

Query: 484 GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G  KI    +    +    IFV DS+D    + + + L ++  L ED       L+ A+K
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM--LQEDELRDAVLLVFANK 139

Query: 543 DDLKPYTMAVQDSARVTQELG 563
            D+ P  M V +   +T +LG
Sbjct: 140 QDM-PNAMPVSE---LTDKLG 156

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 35/150 (23%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPG 469
           + ++ K Q    + + ++ G    GKSAL   F+   F E+Y PT  + Y   V +D  G
Sbjct: 2   AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD--G 59

Query: 470 GNKKTLIL----QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKR 515
              +  IL    QE    I +      EG                 + V+  ++  S+  
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGF----------------LCVFSITEMESFAA 103

Query: 516 TKELLVEVARLGEDSGYGVPCLLIASKDDL 545
           T +   ++ R+ ED    VP LL+ +K DL
Sbjct: 104 TADFREQILRVKEDE--NVPFLLVGNKSDL 131

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 37/138 (26%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
           ++ ++ G    GKSAL   F ++ F ++Y PT  + Y  +  +D        L +L    
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEID---NQWAILDVLDTAG 75

Query: 478 QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
           QE    + E      +G                 + VY  +D+ S++        + R+ 
Sbjct: 76  QEEFSAMREQYMRTGDGF----------------LIVYSVTDKASFEHVDRFHQLILRVK 119

Query: 528 EDSGYGVPCLLIASKDDL 545
           +      P +L+A+K DL
Sbjct: 120 DRE--SFPMILVANKVDL 135

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 25/148 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G  NAGK+ +L  F         +PT G             N KTL  +     
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG------------FNIKTLEHRGFKLN 65

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G K + S  +    S D  I+V DS+D    +  +  L  +  L E+   G   L
Sbjct: 66  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL--LVEERLAGATLL 123

Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIE 565
           + A+K DL P  ++      + + L ++
Sbjct: 124 IFANKQDL-PGALSCNA---IQEALELD 147

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 50/205 (24%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLI-----------------AAAATESVPEKVPPVHAPT 48
           G   ++  + V++G+   GKSS++                 A+  T  V      +   +
Sbjct: 1   GMEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNS 60

Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----------------------ADAV 86
               +   + +        ++  N    N    +                      A   
Sbjct: 61  NNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCA 120

Query: 87  VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ 146
           ++ +  +  +TL R  + W+ +L+       II+   K+D   +     + EV     Q+
Sbjct: 121 IVVFDISNSNTLDRAKT-WVNQLKISS-NYIIILVANKIDK--NKFQVDILEV-----QK 171

Query: 147 FREIETC--VECSATTMIQVPDVFY 169
           + +      ++ SA T   + ++FY
Sbjct: 172 YAQDNNLLFIQTSAKTGTNIKNIFY 196

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 24/146 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
               L G Q +GK+  +N      F+E+  PT G     N+        + +    +  +
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG----FNM--------RKITKGNVTIK 70

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G  +  S  +         +++ D++D+   + +K  L  +  L +    G+P L
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL--LDKPQLQGIPVL 128

Query: 538 LIASKDDLKPYTMAVQDSARVTQELG 563
           ++ +K DL P  +  ++   + +++ 
Sbjct: 129 VLGNKRDL-PGALDEKE---LIEKMN 150

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 34/161 (21%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT-----------GEQY 460
            K +Q + N    L+ G    GKS+ +NS +  +      +               G   
Sbjct: 27  GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT- 85

Query: 461 AVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV-------YDSSDEYSW 513
            +N++D PG  +   +  +  E  +K  L N+      DV ++V        D  D+   
Sbjct: 86  -INIIDTPGLVEAGYVNHQALEL-IKGFLVNRTI----DVLLYVDRLDVYAVDELDKQVV 139

Query: 514 KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
               +        G++       L++       P  ++ + 
Sbjct: 140 IAITQT------FGKEIWCKT-LLVLTHAQFSPPDELSYET 173

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 15/130 (11%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            + ++ G   +GK++L   F +  F + Y  T G  + +  +  PG    TL +     Q
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 479 EIPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536
            I      K+L      A       + VYD ++  S++  ++    V ++ E+S      
Sbjct: 67  TI----GGKMLDKYIYGAQG----VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV 118

Query: 537 LLIASKDDLK 546
            L+ +K DL+
Sbjct: 119 ALVGNKIDLE 128

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 39/139 (28%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
            +  + G ++ GKS+L   F+E  F ++Y PT    +   + V+   G +  L ++    
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVN---GQEYHLQLVDTAG 63

Query: 478 QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARL- 526
           Q+     P+       G                 I VY  +   S++  K +  ++  + 
Sbjct: 64  QDEYSIFPQTYSIDINGY----------------ILVYSVTSIKSFEVIKVIHGKLLDMV 107

Query: 527 GEDSGYGVPCLLIASKDDL 545
           G+     +P +L+ +K DL
Sbjct: 108 GKVQ---IPIMLVGNKKDL 123

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 53/169 (31%)

Query: 433 NAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKT--------LILQEIP--- 481
           NAGKS LLN+ L            G++ A+ V   PG    T         I  +     
Sbjct: 243 NAGKSTLLNTLL------------GQERAI-VSHMPG----TTRDYIEECFIHDKTMFRL 285

Query: 482 --------------EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
                          EG+++   ++  +A  D+ +++ D   E    R  + L E+  L 
Sbjct: 286 TDTAGLREAGEEIEHEGIRR---SRMKMAEADLILYLLDLGTE----RLDDELTEIRELK 338

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
                    L +A+K D            R   +      I +S  + D
Sbjct: 339 AAHP-AAKFLTVANKLDRAA---NADALIRAIADGTGTEVIGISALNGD 383

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 22/177 (12%)

Query: 425 RCLLFGPQNAGKSALLNSFLER-PFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           R LL G + +GKS++      +   +E      T      +   D    +     + + P
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK----IYKDDISNSSFVNFQIWDFP 77

Query: 482 --EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
              +        +         I+V D+ D+Y  +    L + V++  + +   +   + 
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEALTRLHITVSKAYKVN-PDMNFEVF 135

Query: 540 ASKDDLKP--YTMAVQDS--ARVTQEL---GIEPPI----PVSMKSKDLNNVFSRII 585
             K D     + +  Q     R   +L   G+E         S+    +   FS+++
Sbjct: 136 IHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVV 192

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 25/146 (17%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R LL G  NAGK+ LL        S    PT G             N K++  Q     
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG------------FNIKSVQSQGFKLN 63

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G +KI    +    + D+ I+V DS+D   ++ T + L E+  L E+    VP L
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL--LEEEKLSCVPVL 121

Query: 538 LIASKDDLKPYTMAVQDSARVTQELG 563
           + A+K DL        +   + + L 
Sbjct: 122 IFANKQDL-LTAAPASE---IAEGLN 143

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 25/148 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G  NAGK+ +L  F         +PT G     NV        + +++      
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNV--------EEIVINNTRFL 63

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G + + S+      + +  I V DS+D      T+E L ++  L  +       L
Sbjct: 64  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLL 121

Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIE 565
           + A+K D+    M V +   ++Q L + 
Sbjct: 122 IFANKQDV-KECMTVAE---ISQFLKLT 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	670
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	100.0
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	100.0
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.97
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.96
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.94
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.93
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.93
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.93
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.93
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.93
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.93
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.92
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.92
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.92
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.92
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.92
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.92
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.92
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.92
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.92
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.92
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.92
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.92
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.92
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.92
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.92
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.92
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.92
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.92
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.92
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.92
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.92
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.92
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.92
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.91
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.91
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.91
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.91
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.91
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.91
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.91
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.91
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.91
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.91
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.91
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.91
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.91
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.91
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.91
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.91
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.91
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.91
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.91
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.91
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.91
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.91
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.91
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.91
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.91
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.91
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.91
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.91
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.91
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.91
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.91
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.91
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.91
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.91
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.91
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.91
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.91
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.9
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.9
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.9
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.9
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.9
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.9
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.9
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.9
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.9
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.9
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.9
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.9
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.9
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.9
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.9
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.9
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.9
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.9
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.9
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.9
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.9
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.9
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.9
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.9
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.9
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.9
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.9
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.9
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.9
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.9
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.9
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.9
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.89
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.89
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.89
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.89
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.89
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.89
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.89
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.89
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.89
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.89
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.89
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.89
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.89
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.89
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.89
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.89
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.88
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.88
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.88
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.88
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.8
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.88
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.88
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.88
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.87
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.87
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.87
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.87
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.87
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.87
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.87
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.87
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.87
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.87
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.87
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.87
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.86
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.86
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.85
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.85
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.85
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.85
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.85
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.84
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.84
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.84
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.84
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.84
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.84
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.84
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.84
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.83
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.83
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.83
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.83
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.83
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.83
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.83
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.83
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.83
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.83
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.83
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.82
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.82
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.82
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.82
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.82
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.82
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.81
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.81
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.81
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.81
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.81
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.81
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.81
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.8
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.8
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.8
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.8
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.8
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.79
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.79
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.79
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.77
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.77
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.76
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.76
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.76
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.75
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.75
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.74
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.73
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.73
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.73
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.73
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.73
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.73
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.72
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.71
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.7
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.7
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.7
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.7
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.69
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.69
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.68
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.68
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.68
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.68
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.67
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.67
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.67
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.66
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.66
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.66
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.64
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.64
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.64
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.64
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.64
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.64
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.64
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.64
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.64
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.64
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.64
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.63
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.63
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.63
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.63
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.62
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.62
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.62
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.62
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.62
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.62
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.62
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.62
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.61
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.61
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.61
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.6
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.6
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.59
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.58
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.58
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.58
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.57
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.57
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.57
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.56
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.56
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.56
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.56
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.56
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.55
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.55
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.55
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.55
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.54
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.54
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.54
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.54
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.54
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.53
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.53
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.53
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.52
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.52
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.52
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.51
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.5
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.5
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.5
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.48
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.47
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.47
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.47
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.46
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.45
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.45
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.45
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.44
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.44
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.43
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.43
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.41
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.4
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.4
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.4
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.39
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.39
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.39
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.39
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.39
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.39
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.39
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.38
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.37
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.37
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.36
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.35
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.35
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.35
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.34
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.33
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.32
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.31
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.31
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.31
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.29
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.29
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.29
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.28
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.28
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.28
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.28
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.27
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.27
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.27
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.27
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.25
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.23
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.22
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.21
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.21
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.19
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.18
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.18
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.17
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.17
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.16
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.14
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.14
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.01
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.0
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.96
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.92
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.86
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.83
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.81
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.77
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.67
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.67
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.66
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.62
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.49
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.48
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.45
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.45
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.42
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.4
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.37
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.36
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.32
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.32
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.29
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.24
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.19
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.03
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.97
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.96
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.87
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.82
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.81
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.79
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.57
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.44
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.44
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.44
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.39
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.35
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	97.2
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.15
3fwb_A	161	Cell division control protein 31; gene gating, com	97.13
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.05
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	97.05
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	97.04
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	96.99
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	96.97
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	96.93
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	96.86
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.85
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	96.85
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.82
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	96.77
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	96.77
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	96.68
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	96.68
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.67
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	96.66
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	96.65
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	96.65
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	96.62
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	96.6
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	96.59
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	96.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.57
2xxa_A	433	Signal recognition particle protein; protein trans	96.5
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	96.49
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	96.45
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	96.42
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	96.41
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.39
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	96.38
1y1x_A	191	Leishmania major homolog of programmed cell death	96.38
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	96.34
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	96.31
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.23
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	96.23
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.22
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	96.16
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.14
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.09
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	96.09
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	96.07
2xxa_A	433	Signal recognition particle protein; protein trans	96.04
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.98
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	95.91
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	95.91
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	95.9
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.88
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	95.88
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	95.86

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=7.5e-40  Score=355.10  Aligned_cols=325  Identities=17%  Similarity=0.171  Sum_probs=219.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCCCc--------cchhhhHHHhc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL--------ENKGKLNEELK   81 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~   81 (670)
                      ..+|+|+|+||||||||+|+|++.++..  +.+++... .........+..+.+|||||++        .+...+..+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD-RIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccc-eEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            3799999999999999999999987542  34442221 2333455667889999999986        45556678899


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +||++|+|+|++++.+..+.  .+...+++.  ++|+++|+||+|+......  ..+    +. .++ ..+++++||++|
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~~--~~~----~~-~lg-~~~~~~iSA~~g  149 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRAN--IYD----FY-SLG-FGEPYPISGTHG  149 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-----C--CCS----SG-GGS-SCCCEECBTTTT
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchhh--HHH----HH-HcC-CCCeEEEeCcCC
Confidence            99999999999988776653  366666654  8999999999998754321  111    11 222 236899999999


Q ss_pred             CCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV  241 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~  241 (670)
                      .|+.++++.+.+.+......                                                            
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~------------------------------------------------------------  169 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPET------------------------------------------------------------  169 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSS------------------------------------------------------------
T ss_pred             CChHHHHHHHHHhcCccccc------------------------------------------------------------
Confidence            99999999876543210000                                                            


Q ss_pred             HhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 005908          242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI  321 (670)
Q Consensus       242 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~  321 (670)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (436)
T 2hjg_A          170 --------------------------------------------------------------------------------  169 (436)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChH
Q 005908          322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA  401 (670)
Q Consensus       322 f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~  401 (670)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (436)
T 2hjg_A          170 --------------------------------------------------------------------------------  169 (436)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecC
Q 005908          402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEI  480 (670)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~  480 (670)
                                      ......+||+++|++|||||||+|+|++..+..++. ++++.+.....+..+|  ..+.+|||+
T Consensus       170 ----------------~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~  231 (436)
T 2hjg_A          170 ----------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTA  231 (436)
T ss_dssp             ----------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHH
T ss_pred             ----------------cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECC
Confidence                            001234899999999999999999999988764333 3333333334455553  457889999


Q ss_pred             Ch----------hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc
Q 005908          481 PE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (670)
Q Consensus       481 g~----------~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~  550 (670)
                      |+          +.+..+ +...+++.+|++++|+|++++.++++. .|...+...      ++|+++|+||+|+.+...
T Consensus       232 G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~  303 (436)
T 2hjg_A          232 GMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA------GKAVVIVVNKWDAVDKDE  303 (436)
T ss_dssp             HHTCBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT------TCEEEEEEECGGGSCCCT
T ss_pred             CcCcCccccchHHHHHHH-HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc------CCcEEEEEECccCCCcch
Confidence            97          444433 244688999999999999999887765 566666543      799999999999987543


Q ss_pred             c--HHHHHHHHHHh---CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCC
Q 005908          551 A--VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI  595 (670)
Q Consensus       551 ~--~~~~~~~~~~~---~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~  595 (670)
                      .  .+..+++.+.+   ...+++++||++| |++++|+.+.+.+.....+.
T Consensus       304 ~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~  354 (436)
T 2hjg_A          304 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRV  354 (436)
T ss_dssp             THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence            3  22333344443   3346999999999 99999999999887655443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=100.00  E-value=2.5e-38  Score=345.20  Aligned_cols=329  Identities=18%  Similarity=0.178  Sum_probs=220.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCC--------CccchhhhHH
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSS--------SLENKGKLNE   78 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--------~~~~~~~~~~   78 (670)
                      .+...+|+|+|++|||||||+|+|++.++..  ..+++... .........+..+.+|||||        ++.+......
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~-~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD-RIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCccee-EEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            4556799999999999999999999987542  23432221 23344556678999999999        4455566778


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +++.+|++|+|+|..+..+..+  ..+.+.+++.  ++|+++|+||+|+......     ..+.+...++   .++++||
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~~-----~~e~~~lg~~---~~~~iSA  166 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFG---EPYPISG  166 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSS---SEEECCT
T ss_pred             hHhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhhh-----HHHHHHcCCC---ceEEeec
Confidence            8999999999999876544443  3366677664  8999999999998754221     1111122232   5789999


Q ss_pred             ccCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHH
Q 005908          159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV  238 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l  238 (670)
                      ++|.|+.++++.+.+.+.....                                                          
T Consensus       167 ~~g~gv~~L~~~i~~~l~~~~~----------------------------------------------------------  188 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKNIPE----------------------------------------------------------  188 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGGSCS----------------------------------------------------------
T ss_pred             ccccchHHHHHHHHhhcccccc----------------------------------------------------------
Confidence            9999999999876542210000                                                          


Q ss_pred             HHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHH
Q 005908          239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFL  318 (670)
Q Consensus       239 ~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~  318 (670)
                                                                                .                     
T Consensus       189 ----------------------------------------------------------~---------------------  189 (456)
T 4dcu_A          189 ----------------------------------------------------------T---------------------  189 (456)
T ss_dssp             ----------------------------------------------------------S---------------------
T ss_pred             ----------------------------------------------------------c---------------------
Confidence                                                                      0                     


Q ss_pred             HHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCC
Q 005908          319 RGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG  398 (670)
Q Consensus       319 ~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~  398 (670)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (456)
T 4dcu_A          190 --------------------------------------------------------------------------------  189 (456)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ChHHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEE
Q 005908          399 DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLIL  477 (670)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~  477 (670)
                                         ......++|+++|.+|||||||+|+|++.....+.. ++++.+.....+..+|  ..+.+|
T Consensus       190 -------------------~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~  248 (456)
T 4dcu_A          190 -------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIV  248 (456)
T ss_dssp             -------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEET
T ss_pred             -------------------ccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEE
Confidence                               001234899999999999999999999887544333 3333333233445553  478899


Q ss_pred             ecCC----------hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          478 QEIP----------EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       478 d~~g----------~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      ||+|          ++.+..+ +...+++.+|++|+|+|++++.+ .....|...+...      ++|+++|+||+|+.+
T Consensus       249 DT~G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~------~~~~ilv~NK~Dl~~  320 (456)
T 4dcu_A          249 DTAGMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEA------GKAVVIVVNKWDAVD  320 (456)
T ss_dssp             TGGGTTTBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT------TCEEEEEEECGGGSC
T ss_pred             ECCCCCcCcccchHHHHHHHH-HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHc------CCCEEEEEEChhcCC
Confidence            9999          5666554 24568899999999999998765 4445666666553      799999999999986


Q ss_pred             Cccc-HHHHHHHHHHh----CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908          548 YTMA-VQDSARVTQEL----GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP  596 (670)
Q Consensus       548 ~~~~-~~~~~~~~~~~----~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~  596 (670)
                      .+.. .++..+.++..    +..+++++||++| |++++|+.+.+.+..+..+.+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~  375 (456)
T 4dcu_A          321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQ  375 (456)
T ss_dssp             CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred             CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence            4433 44444444443    3457999999999 999999999999876655443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=100.00  E-value=2e-37  Score=336.30  Aligned_cols=330  Identities=17%  Similarity=0.173  Sum_probs=213.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccc---------hhhhHHHhc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------KGKLNEELK   81 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~   81 (670)
                      .+|+|+|+||||||||+|+|++.+.  +.+.|++.... ....+...+..+.+|||||++..         ...+..+++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP-VQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CC-SEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccce-eeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            3799999999999999999999874  34455533221 22344456778999999998742         334567899


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +||++|+|+|++++.+..+.  .+...+++.  ++|+++|+||+|+...  .  ..+....+. .++ ..+++++||++|
T Consensus        81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~--~--~~~~~~~~~-~lg-~~~~~~iSA~~g  150 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE--F--EREVKPELY-SLG-FGEPIPVSAEHN  150 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH--H--HHHTHHHHG-GGS-SCSCEECBTTTT
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc--c--HHHHHHHHH-hcC-CCCEEEEeccCC
Confidence            99999999999887665442  255556655  7999999999997531  0  111112222 333 236899999999


Q ss_pred             CCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV  241 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~  241 (670)
                      .|++++++.+.+.+......                                                            
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~------------------------------------------------------------  170 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLD------------------------------------------------------------  170 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCC------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHhccccccc------------------------------------------------------------
Confidence            99999999887654210000                                                            


Q ss_pred             HhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 005908          242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI  321 (670)
Q Consensus       242 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~  321 (670)
                                                                            ..                        
T Consensus       171 ------------------------------------------------------~~------------------------  172 (439)
T 1mky_A          171 ------------------------------------------------------LE------------------------  172 (439)
T ss_dssp             ------------------------------------------------------SS------------------------
T ss_pred             ------------------------------------------------------ch------------------------
Confidence                                                                  00                        


Q ss_pred             hhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChH
Q 005908          322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA  401 (670)
Q Consensus       322 f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~  401 (670)
                                                    .                                                 
T Consensus       173 ------------------------------~-------------------------------------------------  173 (439)
T 1mky_A          173 ------------------------------S-------------------------------------------------  173 (439)
T ss_dssp             ------------------------------S-------------------------------------------------
T ss_pred             ------------------------------h-------------------------------------------------
Confidence                                          0                                                 


Q ss_pred             HHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEec
Q 005908          402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQE  479 (670)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~  479 (670)
                                     .......++|+|+|++|||||||+|+|++..+..+++  +|+.+ .....+...|  ..+.+||+
T Consensus       174 ---------------~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d-~~~~~i~~~g--~~~~l~Dt  235 (439)
T 1mky_A          174 ---------------KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD-PVDDEVFIDG--RKYVFVDT  235 (439)
T ss_dssp             ---------------CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETT--EEEEESSC
T ss_pred             ---------------ccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCC-ceEEEEEECC--EEEEEEEC
Confidence                           0001234899999999999999999999987654433  34333 2223455553  35678999


Q ss_pred             CChhhHhhh----------hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          480 IPEEGVKKI----------LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       480 ~g~~~~~~~----------~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      +|......+          .+...+++.+|++++|+|++++.++++ ..+...+...      ++|+++|+||+|+.+.+
T Consensus       236 ~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~~------~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          236 AGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR------GRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             SCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT------TCEEEEEEECGGGSTTG
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHc------CCCEEEEEECccCCCch
Confidence            997433221          113457788999999999999877654 2333333332      79999999999998644


Q ss_pred             cc-HH-HHHHHHHHh---CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCC
Q 005908          550 MA-VQ-DSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI  595 (670)
Q Consensus       550 ~~-~~-~~~~~~~~~---~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~  595 (670)
                      .. .+ ..+.+.+.+   ...+++++||++| |++++|+.+.+.+.....+.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i  360 (439)
T 1mky_A          309 EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKV  360 (439)
T ss_dssp             GGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred             hhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence            31 22 222333433   3446999999999 99999999999887655443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.97  E-value=2.2e-30  Score=252.77  Aligned_cols=163  Identities=20%  Similarity=0.350  Sum_probs=138.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+..++....+.+||++|+++|..+  +..+++.+|++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l--~~~~~~~a~~~   89 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL--IPSYIRDSAAA   89 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGG--HHHHHTTCSEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH--HHHHhccccEE
Confidence            4589999999999999999999999999988899998888888888888889999999999999998  88999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.||+.+..|+..+......   +.|++|||||+|+.+.+ +..++++++++++++. +++|||++| ||++
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~---~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~SAktg~nV~e  165 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQ  165 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCC---CCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEeCCCCcCHHH
Confidence            9999999999999999999999877654   69999999999998754 4488899999999987 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|+.|++.+..
T Consensus       166 ~F~~i~~~i~~  176 (216)
T 4dkx_A          166 LFRRVAAALPG  176 (216)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.96  E-value=3.1e-29  Score=244.56  Aligned_cols=172  Identities=17%  Similarity=0.233  Sum_probs=133.3

Q ss_pred             CCCCCCCC-CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-e-EeCCcccCCceeEEEEeCCCCccchhhhH
Q 005908            1 MPGGSGSS-SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLN   77 (670)
Q Consensus         1 m~~~~~~~-~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (670)
                      |++..+.. +.+++||+|+|++|||||||++||+.+.|...+.++.+. . ..........+++.||||+|+++|..+++
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            44444443 457899999999999999999999999998885544432 2 24455667789999999999999999999


Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEe
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      .++++++++++|||++++.||+++.. |+..++. ..+++|++|||||+|+.+.+.+  ..+....++++++.  +|+||
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~~--~~~e~  155 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNV--MFIET  155 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEE
T ss_pred             HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhCC--eeEEE
Confidence            99999999999999999999999985 8888765 4568999999999999887777  34556888888873  79999


Q ss_pred             CcccCCCchHHHHHHHHHHcC
Q 005908          157 SATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      ||++|.||+++|+.|++.+..
T Consensus       156 SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          156 SAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             BTTTTBSHHHHHHHHHHHC--
T ss_pred             eCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.4e-25  Score=215.86  Aligned_cols=172  Identities=23%  Similarity=0.338  Sum_probs=140.2

Q ss_pred             CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (670)
Q Consensus         4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (670)
                      |+.....+.+||+++|++|||||||+++|+++.+.....++.+ .......+....+.+.+|||||++++...+..+++.
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   89 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   89 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence            4444455779999999999999999999999988776444333 333344455566899999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREI  150 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~  150 (670)
                      +|++|+|||++++.+++.+...|+..++...+++|+++|+||+|+.+.            +.+  ..+....+++.++. 
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-  166 (194)
T 2atx_A           90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI--CVEQGQKLAKEIGA-  166 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC--CHHHHHHHHHHHTC-
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCccc--CHHHHHHHHHHcCC-
Confidence            999999999999999999976799999887779999999999999764            223  23445677777763 


Q ss_pred             CeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          151 ETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       151 ~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      .++++|||++|.||+++|+++.+.++.+
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~p  194 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAILTP  194 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence            3699999999999999999999987653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.93  E-value=1.7e-25  Score=215.26  Aligned_cols=170  Identities=21%  Similarity=0.342  Sum_probs=139.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ..+.+||+++|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||||++.+...+..+++++|++|
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            4567999999999999999999999999877644443333 344445566788899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+..........+....+++.++. ..+++|||++|.||+++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  178 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC-VAYIEASSVAKIGLNEV  178 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-SCEEECBTTTTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-CEEEEeecCCCCCHHHH
Confidence            99999999999998667999998887889999999999998642211244556778888763 24999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 005908          168 FYYAQKAVLHPT  179 (670)
Q Consensus       168 ~~~i~~~~~~~~  179 (670)
                      |+.+.+.+....
T Consensus       179 ~~~l~~~i~~~~  190 (194)
T 3reg_A          179 FEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHCSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999887554

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.93  E-value=1.1e-25  Score=220.09  Aligned_cols=172  Identities=24%  Similarity=0.282  Sum_probs=136.8

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      +......+||+|+|++|||||||+++|+++.+...+.++.+.. .....+....+.+.+|||+|++.+...+..+++.+|
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3455678999999999999999999999999887744444333 344455667789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCe
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIET  152 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~  152 (670)
                      ++|+|||++++.+++.+...|+..++...+++|++||+||+|+.++            +.+  ..+....+++.++. .+
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~  177 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPI--SYEQGCAIAKQLGA-EI  177 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHHTC-SE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCcc--CHHHHHHHHHHcCC-CE
Confidence            9999999999999999544699999888889999999999999753            333  34556778888763 37


Q ss_pred             EEEeCcccCCC-chHHHHHHHHHHcCCCC
Q 005908          153 CVECSATTMIQ-VPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       153 ~~~~SA~~~~g-i~~l~~~i~~~~~~~~~  180 (670)
                      +++|||++|.| |+++|+.+.+.+.....
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            99999999998 99999999998876544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.93  E-value=3.3e-25  Score=211.43  Aligned_cols=163  Identities=17%  Similarity=0.194  Sum_probs=132.1

Q ss_pred             CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      +.....+.+||+|+|++|||||||+++|+++.+.....++.+.......+.+..+.+.+|||+|++.+.     +++.+|
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            344567889999999999999999999999998776555554444455566667889999999998765     888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCC--CCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      ++++|||++++.+++.+.. |+..+....  .++|++||+||+|+..  .+.+  ..+....++..++. .++++|||++
T Consensus        88 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa~~  163 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKR-CTYYETCATY  163 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTT-CEEEEEBTTT
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccccc--CHHHHHHHHHHcCC-CeEEEecCCC
Confidence            9999999999999999885 999887753  4799999999999953  3333  34556778887763 3799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 005908          161 MIQVPDVFYYAQKAVL  176 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (670)
                      |.||+++|+++.+.+.
T Consensus       164 ~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          164 GLNVERVFQDVAQKVV  179 (184)
T ss_dssp             TBTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.93  E-value=1.8e-25  Score=212.48  Aligned_cols=170  Identities=24%  Similarity=0.365  Sum_probs=126.2

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..++.+||+++|++|||||||+++|+++.+.....++.+ .......+....+.+.+|||||++++...+..+++.+|++
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            346789999999999999999999999887766444332 2223344455567888999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--------cchhhhhhHHHHHhccCCeEEEeCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------TSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      ++|||++++.+++.+...|...++...+++|+++|+||+|+.+.+..        ....+....+++.++. .++++|||
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa  162 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-PAYIECSS  162 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-SEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-CEEEEEEC
Confidence            99999999999999986799999887778999999999998764321        0023445667777763 37999999


Q ss_pred             ccCCCchHHHHHHHHHHcCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~  178 (670)
                      ++|.||+++|+.+.+.++.+
T Consensus       163 ~~~~gi~~l~~~l~~~i~~~  182 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQP  182 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.93  E-value=6.6e-25  Score=207.86  Aligned_cols=160  Identities=19%  Similarity=0.169  Sum_probs=125.7

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+.+||+++|++|||||||+++|+++.+....|++.........+....+.+.+|||||+++     ..+++++|++|
T Consensus         3 ~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            3467899999999999999999999999987644444333334445555678899999999876     56889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCC--CCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +|||++++.+++.+.. |+..+...    .+++|+++|+||+|+..  .+.+  ..+....++..++. .++++|||++|
T Consensus        78 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~Sa~~~  153 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV--GDARARALXADMKR-CSYYETXATYG  153 (178)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHSS-EEEEEEBTTTT
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHHHhhcC-CeEEEEecccc
Confidence            9999999999999884 76666442    25899999999999953  3333  33445667666643 37999999999


Q ss_pred             CCchHHHHHHHHHHc
Q 005908          162 IQVPDVFYYAQKAVL  176 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~  176 (670)
                      .||+++|+.+.+.+.
T Consensus       154 ~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          154 LNVDRVFQEVAQKVV  168 (178)
T ss_dssp             BTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.93  E-value=7.2e-25  Score=204.94  Aligned_cols=162  Identities=24%  Similarity=0.322  Sum_probs=132.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +.+||+++|++|||||||+++|+++.+.....++.+. ......+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            5799999999999999999999998887664443332 223344556678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ||++++.+++.+.. |...+...  ..++|+++|+||+|+.+.+.+  ..+....+++.++. .+++++||++|.||+++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A           82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCN-CAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTS-CEEEECBTTTTBSHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccC--CHHHHHHHHHHccC-CcEEEecCCCCCCHHHH
Confidence            99999999999875 77777553  358999999999999766554  33455667777643 37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+++.+.+.
T Consensus       158 ~~~l~~~i~  166 (167)
T 1c1y_A          158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988763

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.92  E-value=3.3e-25  Score=211.39  Aligned_cols=166  Identities=25%  Similarity=0.374  Sum_probs=134.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ....+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45679999999999999999999999988766433333 33334455566789999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEE
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+.+.            +.+  ..+....+++.++. .++++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e  160 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE  160 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCC--CHHHHHHHHHHcCC-cEEEE
Confidence            9999999999999855799999887779999999999999743            223  23445677777763 37999


Q ss_pred             eCcc-cCCCchHHHHHHHHHHcC
Q 005908          156 CSAT-TMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       156 ~SA~-~~~gi~~l~~~i~~~~~~  177 (670)
                      |||+ +|.||+++|+.+.+.++.
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999988753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.92  E-value=5e-25  Score=215.15  Aligned_cols=173  Identities=26%  Similarity=0.368  Sum_probs=138.7

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      .+...+.+||+|+|++|||||||+++|+++.+...+.++.+ .......+....+.+.+|||||++.+...+..+++.+|
T Consensus         3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   82 (212)
T 2j0v_A            3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD   82 (212)
T ss_dssp             CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred             CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence            34456789999999999999999999999988766444333 33333445566789999999999999998999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc------cchhhhhhHHHHHhccCCeEEEeCc
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA------TSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      ++|+|||++++.+++.+...|+..++...+++|++||+||+|+.+.+.+      ....+....++..++. .++++|||
T Consensus        83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa  161 (212)
T 2j0v_A           83 IFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSS  161 (212)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccC
Confidence            9999999999999999976799999887779999999999998764321      0123445667777763 37999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      ++|.||+++|+.+.+.+....
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC-
T ss_pred             CCCCCHHHHHHHHHHHHhhhh
Confidence            999999999999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.92  E-value=8.2e-25  Score=208.52  Aligned_cols=168  Identities=25%  Similarity=0.340  Sum_probs=137.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      .++.+||+++|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            357899999999999999999999998887664443333 3334455566788999999999999888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEE
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      +|||++++.+++.+...|+..+....+++|+++|+||+|+.+..            .+  ..+....+++.++. .++++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~  158 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLE  158 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEE
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccC--CHHHHHHHHHhcCC-cEEEE
Confidence            99999999999998767999998877789999999999987541            22  23344566666653 37999


Q ss_pred             eCcccCCCchHHHHHHHHHHcCCC
Q 005908          156 CSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      |||++|.||+++|+.+.+.+..+.
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          159 CSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             ecCCCccCHHHHHHHHHHHHhccc
Confidence            999999999999999999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.92  E-value=8.3e-25  Score=213.95  Aligned_cols=169  Identities=17%  Similarity=0.242  Sum_probs=141.1

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      .....+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+  +..+++.+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~   99 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDS   99 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTT--GGGGCTTC
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHHcCCC
Confidence            3456799999999999999999999999998888888887664 55667767778999999999999888  78899999


Q ss_pred             cEEEEEEECCCcccHHH-HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCC
Q 005908          499 DVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGI  564 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~-~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~  564 (670)
                      |++|+|||++++.+|.. +..|+..+.....    +.|+++|+||+|+.+             .....+++.++++.+++
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYCP----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHCT----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            99999999999999998 6899999988753    699999999999975             23457889999999998


Q ss_pred             CCcEEeecccC-C-hHHHHHHHHHHHhCCCCC
Q 005908          565 EPPIPVSMKSK-D-LNNVFSRIIWAAEHPHLN  594 (670)
Q Consensus       565 ~~~~~vSA~~g-~-v~~l~~~l~~~~~~~~~~  594 (670)
                      .++++|||++| | ++++|+.+.+.+......
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence            56999999999 9 999999999998765443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.92  E-value=1.7e-24  Score=206.05  Aligned_cols=165  Identities=17%  Similarity=0.253  Sum_probs=135.3

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ....+.+||+|+|++|||||||+++|++..+.....++.... ..........+.+.+|||||++.+...+..+++.+|+
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345678999999999999999999999988877754433332 2334455556778899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc-cCC
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT-TMI  162 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~-~~~  162 (670)
                      +++|||++++.+++.+.. |...+..  ...++|+++|+||+|+.+.+.+  ..+....+++.++  .+++++||+ +|.
T Consensus        93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~  167 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPL  167 (183)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCB
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhC--CeEEEeccCCCCC
Confidence            999999999999999884 7777754  2358999999999999876665  3455677888887  379999999 999


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++|+.+.+.+.
T Consensus       168 ~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          168 NVDKTFHDLVRVIR  181 (183)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.92  E-value=1.9e-24  Score=202.65  Aligned_cols=163  Identities=26%  Similarity=0.422  Sum_probs=138.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|++|||||||+|+|++..+...+.+|++.++....+..+|....+.+||++|++.+..+  +..+++.+|++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~   79 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--TTAYYRGAMGI   79 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--CHHHHTTEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--HHHHhccCCEE
Confidence            4689999999999999999999999887777788888888888888876778899999999888877  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ++|+|++++.++..+..|+..+......   +.|+++|+||+|+.+.....+..+++++.++++ ++++||++| |++++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           80 ILVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence            9999999999999999999988876543   689999999999966556678888999999975 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      |+.|.+.+..
T Consensus       156 ~~~l~~~~~~  165 (170)
T 1g16_A          156 FFTLAKLIQE  165 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.92  E-value=6.7e-25  Score=209.84  Aligned_cols=163  Identities=21%  Similarity=0.246  Sum_probs=129.1

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ...+.+||+|+|++|||||||+++|+++.+...+.++.+.. .....+....+.+.+|||+|++.+... ..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            34567999999999999999999999999877755444333 233445566789999999999887764 6799999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc-ccC
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA-TTM  161 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA-~~~  161 (670)
                      ++|||++++.+++.+. .|+..+....    .++|+++|+||+|+...+.+  ..+....+++.++.  ++++||| ++|
T Consensus        96 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sa~~~g  170 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRFGC--LFFEVSACLDF  170 (187)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECCSSSCS
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHcCC--cEEEEeecCcc
Confidence            9999999999999998 4888886642    58999999999999766555  33455777777763  7999999 899


Q ss_pred             CCchHHHHHHHHHHc
Q 005908          162 IQVPDVFYYAQKAVL  176 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~  176 (670)
                      .||+++|+.+.+.+.
T Consensus       171 ~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          171 EHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHh
Confidence            999999999998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.92  E-value=1.1e-24  Score=203.77  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=111.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +.+||+++|++|||||||+++|.+..+....++..........+....+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            35899999999999999999999877654433322233334456667889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      |++++.+++.+.. |...+...  .+++|+++|+||+|+.+.+.+  ..+....++...+  .++++|||++|.||+++|
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~  155 (166)
T 3q72_A           81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALF  155 (166)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTT--CEEEECBGGGTBSHHHHH
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEecccccccccc--CHHHHHHHHHHhC--CcEEEeccCCCCCHHHHH
Confidence            9999999999985 77777654  358999999999999877665  3344566777766  379999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      +.+.+.+.
T Consensus       156 ~~l~~~~~  163 (166)
T 3q72_A          156 EGVVRQIR  163 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.92  E-value=4.9e-25  Score=215.61  Aligned_cols=167  Identities=28%  Similarity=0.373  Sum_probs=117.2

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ..+.+||+|+|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++++...+..+++.+|++|
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            456799999999999999999999998876664433322 2234445566788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEE
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+....            .+  ..+....+++.++. .++++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~  187 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPV--TYHRGQEMARSVGA-VAYLE  187 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcc--cHHHHHHHHHhcCC-CEEEE
Confidence            99999999999999767999998877789999999999997653            22  22345667777763 37999


Q ss_pred             eCcccCCCchHHHHHHHHHHcCC
Q 005908          156 CSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      |||++|.||+++|+.+.+.+...
T Consensus       188 ~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          188 CSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999887643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.92  E-value=1.8e-24  Score=208.27  Aligned_cols=168  Identities=15%  Similarity=0.255  Sum_probs=137.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-hhchHhhcccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASC  498 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~a  498 (670)
                      ....+||+|+|++|||||||+|+|++......+.++++.+.....+.+++....+.+||++|++.+.. +  ...+++.+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~   97 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL--RDHCLQTG   97 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHH--HHHHHHHC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhh--HHHhhccC
Confidence            45679999999999999999999987655444445556556666677776667888999999977654 5  56778999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      |++|+|||++++.+|..+..|+..+.......  +.|+++|+||+|+.+.+ ...++++++++.+++. ++++||++| |
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~  174 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHN  174 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEBTTTTBS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEcCCCCCC
Confidence            99999999999999999999999988765433  69999999999998644 3467888899988875 999999999 9


Q ss_pred             hHHHHHHHHHHHhCCC
Q 005908          577 LNNVFSRIIWAAEHPH  592 (670)
Q Consensus       577 v~~l~~~l~~~~~~~~  592 (670)
                      ++++|+.+++.+...+
T Consensus       175 v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          175 TRELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999887543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.92  E-value=1.9e-24  Score=205.30  Aligned_cols=169  Identities=18%  Similarity=0.281  Sum_probs=141.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|++|||||||+|+|+++.+...+.+|++..+ ...+..++....+.+||++|++.+..+  ...+++.+|+
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~~   80 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIF--PQTYSIDING   80 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCC--CGGGTTTCSE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHHHhcCCE
Confidence            3569999999999999999999999888887778888766 566677766677889999999888777  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.+++.+..|+..+.......  ++|+++|+||+|+.+.+. ..++++++++.++++ ++++||++| |++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  157 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAV  157 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCTTSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEecCCCCCHH
Confidence            999999999999999999999987765544  699999999999975443 478889999999986 999999999 999


Q ss_pred             HHHHHHHHHHhCCCCCC
Q 005908          579 NVFSRIIWAAEHPHLNI  595 (670)
Q Consensus       579 ~l~~~l~~~~~~~~~~~  595 (670)
                      ++|+.+.+.+.......
T Consensus       158 ~l~~~l~~~~~~~~~~~  174 (181)
T 3t5g_A          158 DVFRRIILEAEKMDGAC  174 (181)
T ss_dssp             HHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHhcCCc
Confidence            99999999998765443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=210.50  Aligned_cols=168  Identities=20%  Similarity=0.338  Sum_probs=137.1

Q ss_pred             ccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (670)
Q Consensus       418 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (670)
                      ......+||+|+|.+|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~  101 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI--TQSYYRS  101 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH--HHHHHTT
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHHhh
Confidence            33466799999999999999999999999887777778777777777877765678899999999988887  7889999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +|++|+|||++++.+|+.+..|+..+......   ++|+++|+||+|+.+.+ ...++++++++.+++.+++++||++| 
T Consensus       102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS---NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS  178 (201)
T ss_dssp             CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            99999999999999999999999998876532   69999999999997643 34678889999999855999999999 


Q ss_pred             ChHHHHHHHHHHHhC
Q 005908          576 DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~  590 (670)
                      |++++|++|.+.+..
T Consensus       179 gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          179 NVEEAFLRVATELIM  193 (201)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.92  E-value=1.4e-24  Score=206.19  Aligned_cols=167  Identities=17%  Similarity=0.174  Sum_probs=135.2

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ..+.+||+|+|++|||||||+++|+++.+....+++.+... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            34679999999999999999999998888777555444433 33344455688999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      +|||++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+  ..+....++..++.  +++++||++|.||+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~  157 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNA--AFLESSAKENQTAV  157 (181)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCTTSHHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhccee--cHHHHHHHHHHhCC--cEEEEecCCCCCHH
Confidence            9999999999999985 87777543  247999999999999876665  34556777888763  79999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q 005908          166 DVFYYAQKAVLHPTA  180 (670)
Q Consensus       166 ~l~~~i~~~~~~~~~  180 (670)
                      ++|+.+.+.+.....
T Consensus       158 ~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          158 DVFRRIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.92  E-value=1.7e-24  Score=202.41  Aligned_cols=162  Identities=20%  Similarity=0.292  Sum_probs=129.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ++.+||+++|++|||||||+++|++..+....+++..... ....+....+.+.+|||||++++...+..+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4679999999999999999999999988766544333322 334455566889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.+++.+.. |...+....  .++|+++|+||+|+.+.+.+  ..+....+++.++  .+++++||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWN--VNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCHHH
Confidence            999999999999874 877776543  38999999999999765554  2344566666666  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+++.+.+.
T Consensus       157 l~~~l~~~i~  166 (168)
T 1u8z_A          157 VFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=210.12  Aligned_cols=167  Identities=27%  Similarity=0.379  Sum_probs=128.4

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ...+.+||+|+|++|||||||+++|++..+...++++.... .....+....+.+.+|||||++++...+..+++++|++
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            45678999999999999999999999998776654444332 23334445567899999999999998899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEE
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCV  154 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (670)
                      |+|||++++.+++.+...|+..+....+++|+++|+||+|+...            +.+  ..+....++..++. .+++
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~  172 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV--PEEAAKLLAEEIKA-ASYI  172 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccC--CHHHHHHHHHhcCC-cEEE
Confidence            99999999999999976799999887779999999999999753            222  33445667777663 3799


Q ss_pred             EeCcccCCCchHHHHHHHHHHcC
Q 005908          155 ECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      +|||++|.||+++|+.+.+.+..
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999988753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.92  E-value=3.3e-24  Score=202.16  Aligned_cols=162  Identities=23%  Similarity=0.244  Sum_probs=120.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCcc--chhhhHHHhccCCEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE--NKGKLNEELKRADAV   86 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i   86 (670)
                      .+.+||+|+|++|||||||+++|++..+....++...+. .....+....+.+.+|||||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            457999999999999999999999988766544433332 23334555567899999999987  456667889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      ++|||++++.+++.+.. |...+...  ..++|+++|+||+|+.+.+.+ . .+....++..++  .++++|||++|.||
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi  156 (175)
T 2nzj_A           82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREV-S-VEEGRACAVVFD--CKFIETSATLQHNV  156 (175)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCS-C-HHHHHHHHHHHT--SEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhcccccc-C-HHHHHHHHHHcC--CeEEEEecCCCCCH
Confidence            99999999999999884 88877764  348999999999999876665 3 334456666666  37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       157 ~~l~~~l~~~~~  168 (175)
T 2nzj_A          157 AELFEGVVRQLR  168 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.92  E-value=2.2e-24  Score=204.03  Aligned_cols=164  Identities=23%  Similarity=0.286  Sum_probs=134.2

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ...+.+||+|+|++|||||||+++|++..+....+++.+...  ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            345679999999999999999999999988766544443322  333445567889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+  ..+....+++.++  .+++++||++|.||
T Consensus        91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  165 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENV  165 (179)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred             EEEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence            99999999999999887 4888887643 58999999999999765554  2344566777766  37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       166 ~~l~~~l~~~i~  177 (179)
T 1z0f_A          166 EDAFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.92  E-value=2.6e-24  Score=208.25  Aligned_cols=164  Identities=25%  Similarity=0.380  Sum_probs=133.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ...+||+|+|++|||||||+++|.++.+.... +++.........+....+.+.+|||||++++...+..+++.+|++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            45789999999999999999999999887664 33333333334455556889999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      |||++++.+++.+...|...++...+++|+++|+||+|+...            +.+  ..+....+++.++. .++++|
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~  179 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPV--RSEEGRDMANRISA-FGYLEC  179 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcC--CHHHHHHHHHhCCC-cEEEEe
Confidence            999999999999966799999887779999999999999765            222  23345566666653 379999


Q ss_pred             CcccCCCchHHHHHHHHHHc
Q 005908          157 SATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ||++|.||+++|+.+.+.++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998765

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.2e-24  Score=210.48  Aligned_cols=166  Identities=19%  Similarity=0.249  Sum_probs=132.5

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      .......+||+|+|++|||||||+++|+++.+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34455679999999999999999999999887665433333222  2334445568899999999999988889999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      |++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+  ..+....++...+  .++++|||++|.
T Consensus       100 d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~  174 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD--MYYLETSAKESD  174 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCT
T ss_pred             CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CEEEEEeCCCCC
Confidence            9999999999999999887 4888887653 47999999999999765554  2344566666665  379999999999


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++|+++.+.+.
T Consensus       175 gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          175 NVEKLFLDLACRLI  188 (201)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998775

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=210.17  Aligned_cols=167  Identities=17%  Similarity=0.263  Sum_probs=129.8

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-Ce-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      ......+||+|+|++|||||||+++|++..+.....++.+ .. .....+....+.+.+|||||++++...+..+++.+|
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN  103 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence            3345679999999999999999999999887665433322 22 223334445689999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      ++|+|||++++.+++.+. .|+..+.... .++|++||+||+|+...+.+ . .+.+..+++.++. .++++|||++|.|
T Consensus       104 ~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~~-~~~~~~SA~~g~g  179 (201)
T 2hup_A          104 GAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELREV-S-LAEAQSLAEHYDI-LCAIETSAKDSSN  179 (201)
T ss_dssp             EEEEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-C-HHHHHHHHHHTTC-SEEEECBTTTTBS
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccccccc-C-HHHHHHHHHHcCC-CEEEEEeCCCCCC
Confidence            999999999999999988 4888887654 68999999999999875555 3 3445667777762 3799999999999


Q ss_pred             chHHHHHHHHHHcC
Q 005908          164 VPDVFYYAQKAVLH  177 (670)
Q Consensus       164 i~~l~~~i~~~~~~  177 (670)
                      |+++|+++.+.+..
T Consensus       180 i~~l~~~l~~~i~~  193 (201)
T 2hup_A          180 VEEAFLRVATELIM  193 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.92  E-value=4.2e-24  Score=205.45  Aligned_cols=166  Identities=19%  Similarity=0.284  Sum_probs=142.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+++|.+|||||||+|+|+++.+...+.+|++..+.. .+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   96 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRL--RPLSYADSD   96 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCS
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHH--hHhhccCCc
Confidence            4567999999999999999999999999877777888776653 4556656677889999999998887  788999999


Q ss_pred             EEEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC---cccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          500 VTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY---TMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      ++++|||++++.+|..+ ..|+..+.....    +.|+++|+||+|+.+.   ....++++++++.+++.+++++||++|
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  172 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK  172 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence            99999999999999997 678888876643    6999999999999753   344788899999999888999999999


Q ss_pred             -ChHHHHHHHHHHHhCCC
Q 005908          576 -DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~~  592 (670)
                       |++++|+.+.+.+....
T Consensus       173 ~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          173 IGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             BSHHHHHHHHHHHHHCSC
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence             99999999999887544

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.92  E-value=8.5e-25  Score=212.32  Aligned_cols=165  Identities=25%  Similarity=0.374  Sum_probs=133.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ....+||+|+|++|||||||+++|++..+...+.++.. .......+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            35679999999999999999999999988766433333 23233445566789999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEE
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      +|||++++.+++.+...|+..++...+++|+++|+||+|+.+.            +.+  ..+....+++.++. .++++
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e  181 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE  181 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCC--CHHHHHHHHHHcCC-CEEEE
Confidence            9999999999999855799999887778999999999999742            223  23445677777763 37999


Q ss_pred             eCcc-cCCCchHHHHHHHHHHc
Q 005908          156 CSAT-TMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       156 ~SA~-~~~gi~~l~~~i~~~~~  176 (670)
                      |||+ +|.||+++|+.+.+.++
T Consensus       182 ~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          182 CSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHHHHh
Confidence            9999 68999999999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.92  E-value=2.4e-24  Score=207.38  Aligned_cols=165  Identities=20%  Similarity=0.225  Sum_probs=129.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchh-hhHHHhccCCE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADA   85 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~   85 (670)
                      ....+||+|+|++|||||||+++|++..+... .+++...+. ....++...+.+.+|||+|++.+.. +...+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            44679999999999999999999986543222 333333322 3344556678899999999987765 67788999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      +|+|||++++.+++.+.. |+..+....  .++|+++|+||+|+...+.+ . .+....++..++  .++++|||++|.|
T Consensus       100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~  174 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV-S-LEEGRHLAGTLS--CKHIETSAALHHN  174 (195)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCc-C-HHHHHHHHHHhC--CEEEEEcCCCCCC
Confidence            999999999999999885 888887643  48999999999999876665 3 344566777776  3799999999999


Q ss_pred             chHHHHHHHHHHcCC
Q 005908          164 VPDVFYYAQKAVLHP  178 (670)
Q Consensus       164 i~~l~~~i~~~~~~~  178 (670)
                      |+++|+.+.+.+...
T Consensus       175 v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          175 TRELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.92  E-value=4.3e-24  Score=202.43  Aligned_cols=164  Identities=24%  Similarity=0.372  Sum_probs=141.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ..+.+||+|+|.+|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+  ...+++.+|
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   83 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--TSTYYRGTH   83 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--CGGGGTTCS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--HHHHhccCC
Confidence            356799999999999999999999999988777788887788888888866678899999999888877  788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.++..+..|+..+.....    +.|+++|+||+|+.+.+.. ......++...+++ ++++||++| |+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  158 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNCD----DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVNV  158 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCT----TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            99999999999999999999999887654    6999999999998865433 67788899999985 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|++|.+.+..
T Consensus       159 ~~l~~~l~~~~~~  171 (181)
T 3tw8_B          159 EEMFNCITELVLR  171 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.92  E-value=3.2e-24  Score=201.12  Aligned_cols=162  Identities=21%  Similarity=0.312  Sum_probs=133.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      .+.+||+++|++|||||||+++|++..+.....++.+.+.  ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999987666444444332  33445556788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+.+.+  ..+....+++.++  .+++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           84 IVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH--AIFVETSAKNAININE  158 (170)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCcccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHH
Confidence            999999999999987 488888765 468999999999999866554  3445566777766  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+.+.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=8.8e-25  Score=211.56  Aligned_cols=170  Identities=18%  Similarity=0.198  Sum_probs=132.5

Q ss_pred             CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      .++...+.+||+|+|++|||||||+++|++..+.....++.+.. .....+....+.+.+|||||++.+...+..+++.+
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            34456678999999999999999999999999877654444332 23344556678999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      |++|+|||++++.+++.+. .|...+...  ..++|+++|+||+|+...+.+  ..+....++..++.  +++++||++|
T Consensus        97 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~  171 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWGA--TFMESSAREN  171 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECCTTCH
T ss_pred             CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcccccc--CHHHHHHHHHHhCC--eEEEEeCCCC
Confidence            9999999999999999998 488888654  347899999999999876655  33445677777763  7999999999


Q ss_pred             CCchHHHHHHHHHHcCCC
Q 005908          162 IQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~  179 (670)
                      .||+++|+.+.+.+....
T Consensus       172 ~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          172 QLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            999999999999886543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.92  E-value=5.2e-24  Score=202.65  Aligned_cols=164  Identities=19%  Similarity=0.351  Sum_probs=141.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ..+.+||+|+|++|||||||+|+|++..+...+.+|++..+ ...+..++....+.+||++|++.+..+  ...+++.+|
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d   91 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM--REQYMRTGD   91 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS--HHHHHHHCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHH--HHHHHhcCC
Confidence            45679999999999999999999999988888778887766 566777766667788999999988887  788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecc-cC-C
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMK-SK-D  576 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~-~g-~  576 (670)
                      ++++|||++++.+|+.+..|+..+.......  +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||+ +| |
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~  168 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLN  168 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEeccCCCCCC
Confidence            9999999999999999999999887754433  69999999999997643 4477889999999966 9999999 99 9


Q ss_pred             hHHHHHHHHHHHh
Q 005908          577 LNNVFSRIIWAAE  589 (670)
Q Consensus       577 v~~l~~~l~~~~~  589 (670)
                      ++++|+.|.+.+.
T Consensus       169 v~~l~~~l~~~i~  181 (183)
T 3kkq_A          169 VDKTFHDLVRVIR  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998775

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=2.3e-24  Score=209.48  Aligned_cols=164  Identities=23%  Similarity=0.255  Sum_probs=124.7

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCcc-chhhhHHHhccC
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRA   83 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~a   83 (670)
                      .....+||+|+|++|||||||+|+|++..  |....+++...+. ....+++..+.+.+|||+|+.. +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            44567999999999999999999999754  4554444433332 3344555667889999999876 444556778899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      |++|+|||++++.+|+.+.. |...+...  .+++|+|||+||+|+...+.+ .. +....++..++  .++++|||++|
T Consensus       113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~~-~e~~~~a~~~~--~~~~e~SAk~g  187 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-SV-SEGRACAVVFD--CKFIETSAAVQ  187 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CH-HHHHHHHHHHT--CEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceE-eH-HHHHHHHHHcC--CEEEEEeCCCC
Confidence            99999999999999999885 88777653  247999999999999765555 33 33455666665  37999999999


Q ss_pred             CCchHHHHHHHHHHc
Q 005908          162 IQVPDVFYYAQKAVL  176 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~  176 (670)
                      .||+++|+.+.+.+.
T Consensus       188 ~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          188 HNVKELFEGIVRQVR  202 (211)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=3.6e-24  Score=207.14  Aligned_cols=164  Identities=21%  Similarity=0.319  Sum_probs=143.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|++|||||||+|+|+++.+...+.+|++.++....+.++|....+.+||++|++.+..+  +..+++.+|
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d  100 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--TQSYYRSAN  100 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HGGGSTTCS
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHHhcCC
Confidence            456799999999999999999999999888777788887888788888866678899999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+ ...++++.+++..+++ ++++||++| |+
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gv  176 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYASN---KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNV  176 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999998876543   69999999999997543 3367788888888875 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|+++.+.+.
T Consensus       177 ~~l~~~l~~~i~  188 (201)
T 2ew1_A          177 EKLFLDLACRLI  188 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=6.6e-24  Score=201.18  Aligned_cols=168  Identities=19%  Similarity=0.351  Sum_probs=135.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      .+..+||+|+|.+|||||||+|+|++..+.. .+.+|++.++....+..+|....+.+||++|++.+..+  +..+++.+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~   84 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--THAYYRDA   84 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGC
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHccCC
Confidence            4567999999999999999999999988864 44577777777777777766678889999999988887  78889999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      |++++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.+.+. ..++.+++++.++++ ++++||++| |
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  160 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLN  160 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCC
Confidence            9999999999999999999999988876542   699999999999986443 467788889888875 999999999 9


Q ss_pred             hHHHHHHHHHHHhCCCC
Q 005908          577 LNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       577 v~~l~~~l~~~~~~~~~  593 (670)
                      ++++|+++.+.+.....
T Consensus       161 i~~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          161 VDLAFTAIAKELKRRSM  177 (180)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999876543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.92  E-value=4.7e-24  Score=206.98  Aligned_cols=165  Identities=21%  Similarity=0.304  Sum_probs=134.6

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ....+.+||+|+|++|||||||+++|++..+....+++.+... ....+....+.+.+|||||++++...+..+++.+|+
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            3456679999999999999999999999988776555444332 334455556789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      +++|||++++.+++.+.. |+..+....  .++|+++|+||+|+...+.+ . .+....++..++  .+++++||++|.|
T Consensus        89 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~g  163 (206)
T 2bov_A           89 FLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV-S-VEEAKNRAEQWN--VNYVETSAKTRAN  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHT--CEEEEECTTTCTT
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccc-c-HHHHHHHHHHhC--CeEEEEeCCCCCC
Confidence            999999999999999874 888887654  38999999999999876554 3 344566667666  3799999999999


Q ss_pred             chHHHHHHHHHHc
Q 005908          164 VPDVFYYAQKAVL  176 (670)
Q Consensus       164 i~~l~~~i~~~~~  176 (670)
                      |+++|+++.+.+.
T Consensus       164 i~~l~~~l~~~i~  176 (206)
T 2bov_A          164 VDKVFFDLMREIR  176 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.92  E-value=4.1e-24  Score=204.66  Aligned_cols=164  Identities=18%  Similarity=0.222  Sum_probs=134.0

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      .....+||+|+|++|||||||+++|++..+.....++.+...  .........+.+.+|||||++.+...+..+++.+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            344579999999999999999999999988666433333332  233444567899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....+++.++  .+++++||++|.||
T Consensus        98 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLG--FEFFEASAKENINV  172 (189)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence            999999999999999874 888887653 58999999999999765554  3345677777776  37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       173 ~~l~~~l~~~i~  184 (189)
T 2gf9_A          173 KQVFERLVDVIC  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.92  E-value=5.2e-24  Score=204.91  Aligned_cols=166  Identities=25%  Similarity=0.399  Sum_probs=146.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+..+||+|+|.+|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+  ...+++.+|
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   90 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH   90 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT--HHHHHTTCS
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHHhhCC
Confidence            356799999999999999999999999988888888888888888888866678899999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+.+.+.. ....+++++.++++ ++++||++| |+
T Consensus        91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv  166 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNV  166 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEECTTTCTTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCH
Confidence            999999999999999999999999877643   5999999999999865443 67788899999986 999999999 99


Q ss_pred             HHHHHHHHHHHhCC
Q 005908          578 NNVFSRIIWAAEHP  591 (670)
Q Consensus       578 ~~l~~~l~~~~~~~  591 (670)
                      +++|++|.+.+...
T Consensus       167 ~~l~~~l~~~i~~~  180 (196)
T 3tkl_A          167 EQSFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.92  E-value=3.2e-24  Score=201.05  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=131.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      .+.+||+++|++|||||||+++|+++.+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4679999999999999999999999887766444333322  33444556789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.+ . .+....++...+  .+++++||++|.||++
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A           84 VVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANKRAV-D-FQEAQSYADDNS--LLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCcccccc-C-HHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence            9999999999999884 87777654 468999999999999765544 2 344556666665  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+++.+.+.
T Consensus       159 l~~~i~~~~~  168 (170)
T 1r2q_A          159 IFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.92  E-value=9.4e-25  Score=211.92  Aligned_cols=166  Identities=23%  Similarity=0.323  Sum_probs=132.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ..+.+||+++|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++.+...+..+++.+|+++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            456899999999999999999999999887764443332 2244455566788889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+......          ....+....+++.++. .++++||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC-cEEEEee
Confidence            9999999999999976799999887789999999999998765320          0122345566777663 3799999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 005908          158 ATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~  175 (670)
                      |++|.||+++|+++.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.92  E-value=3.9e-24  Score=205.17  Aligned_cols=168  Identities=20%  Similarity=0.268  Sum_probs=133.6

Q ss_pred             CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (670)
Q Consensus         4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (670)
                      +......+.+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++
T Consensus        13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   92 (191)
T 2a5j_A           13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR   92 (191)
T ss_dssp             CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence            3445566789999999999999999999999987665333222 222 23344455689999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      .+|++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  ..+....+++.++  .+++++||++
T Consensus        93 ~~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~  167 (191)
T 2a5j_A           93 GAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--LIFMETSAKT  167 (191)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcC--CEEEEEeCCC
Confidence            9999999999999999999885 88888664 458999999999999765554  3344567777776  3799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 005908          161 MIQVPDVFYYAQKAVL  176 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (670)
                      |.||+++|+++.+.+.
T Consensus       168 ~~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          168 ACNVEEAFINTAKEIY  183 (191)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.92  E-value=2.9e-24  Score=204.76  Aligned_cols=166  Identities=20%  Similarity=0.294  Sum_probs=132.2

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      +...++.+||+|+|++|||||||+++|++..+....+++..... ....+....+.+.+|||||++++...+..+++.+|
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            33456789999999999999999999999988776544433332 33445555678999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      ++++|||++++.+++.+.. |+..+....  .++|+++|+||+|+.+.+.+  ..+....+++.++  .+++++||++|.
T Consensus        92 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~  166 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRA  166 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCT
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCC
Confidence            9999999999999999874 877776543  38999999999999765554  2344566677766  379999999999


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++|+++.+.+.
T Consensus       167 gi~~l~~~l~~~i~  180 (187)
T 2a9k_A          167 NVDKVFFDLMREIR  180 (187)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.92  E-value=2.5e-24  Score=201.00  Aligned_cols=161  Identities=22%  Similarity=0.295  Sum_probs=130.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +.+||+++|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            5799999999999999999999998877664443332 234444555667899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ||++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+  ..+....+++.++  .+++++||++|.||+++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A           82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccC--CHHHHHHHHHHhC--CCEEEecCCCCcCHHHH
Confidence            99999999999885 66666543  248999999999999765554  3344566777765  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+++.+.+.
T Consensus       157 ~~~l~~~~~  165 (167)
T 1kao_A          157 FAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=204.55  Aligned_cols=164  Identities=20%  Similarity=0.221  Sum_probs=132.2

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ...+.+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            345679999999999999999999999887655433333222  233344455889999999999998899999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      +++|||++++.+++.+. .|+..+....+++|+++|+||+|+...+.+  ..+....++...+.  +++++||++|.||+
T Consensus        85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  159 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMGI--QLFETSAKENVNVE  159 (181)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--CEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchhccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHH
Confidence            99999999999999987 499999887778999999999999876554  33445667777763  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+++.+.+.
T Consensus       160 ~l~~~l~~~~~  170 (181)
T 3tw8_B          160 EMFNCITELVL  170 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.92  E-value=4.5e-24  Score=200.23  Aligned_cols=164  Identities=18%  Similarity=0.314  Sum_probs=136.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+|+|++|||||||+|+|++..+...+.+|++.++....+...|....+.+||++|++.+..+  ...+++.+|+
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~   81 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL--GPIYYRDSNG   81 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHhccCCE
Confidence            45799999999999999999999999888777788887777778888877778899999999888877  6778999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.+.+ ...++.+++++.++.+ ++++||++| |++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  157 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIE  157 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGG---GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHH
Confidence            99999999999999999999888765432   59999999999997643 3467888899998875 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~~~~  169 (170)
T 1z08_A          158 ELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.91  E-value=3e-24  Score=200.89  Aligned_cols=162  Identities=20%  Similarity=0.265  Sum_probs=132.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+||+++|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++++...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999999887666433333 222 33344455788999999999999889999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|||++++.+++.+.. |+..+....++.|+++|+||+|+.+.+.+  ..+....+++.++  .+++++||++|.||+++
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l  157 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEV  157 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHH
Confidence            9999999999998875 88888665568999999999999765554  3344567777776  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+++.+.+.
T Consensus       158 ~~~l~~~~~  166 (168)
T 1z2a_A          158 FKYLAEKHL  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.91  E-value=3.6e-24  Score=200.79  Aligned_cols=163  Identities=16%  Similarity=0.249  Sum_probs=126.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-hhchHhhcccccEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASCDVT  501 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~v  501 (670)
                      .+||+++|++|||||||+|+|.+..+...+.++++.+.....+..++....+.+||++|++.+.. +  ...+++.+|++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~   79 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWL--QDHCLQTGDAF   79 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC----------CHHHHHCSEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhh--hhhhhccCCEE
Confidence            58999999999999999999998887776666666666667777786677888999999988766 4  55678899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+.+. ....++.+++++.++++ ++++||++| |+++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           80 LIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNTRE  156 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHhcccCC--CCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEecCccCCCHHH
Confidence            99999999999999999999998876543  6999999999999753 34477888899999985 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|+.+.+.+..
T Consensus       157 l~~~l~~~i~~  167 (169)
T 3q85_A          157 LFEGAVRQIRL  167 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.91  E-value=7.5e-24  Score=200.96  Aligned_cols=165  Identities=22%  Similarity=0.272  Sum_probs=132.4

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ...+.+||+++|++|||||||+++|++..+.... ++...... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            3456799999999999999999999999877663 33222222 333445557899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|+|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+.+.+  ..+....+++..+  .+++++||++|.||
T Consensus        88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi  162 (181)
T 2efe_B           88 AIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENG--LFFMETSAKTATNV  162 (181)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CEEEECCSSSCTTH
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCH
Confidence            99999999999999988 488888665 358999999999999876655  3344566776665  37999999999999


Q ss_pred             hHHHHHHHHHHcC
Q 005908          165 PDVFYYAQKAVLH  177 (670)
Q Consensus       165 ~~l~~~i~~~~~~  177 (670)
                      +++|+++.+.+..
T Consensus       163 ~~l~~~l~~~~~~  175 (181)
T 2efe_B          163 KEIFYEIARRLPR  175 (181)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.91  E-value=5.7e-24  Score=204.11  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=132.9

Q ss_pred             CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE---eCCcccCC---------ceeEEEEeCCCCc
Q 005908            3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPD---------RVPVTIIDTSSSL   70 (670)
Q Consensus         3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~i~Dt~G~~   70 (670)
                      +|++......+||+|+|++|||||||+++|++..+.....++.+...   ....+...         .+.+.+|||||++
T Consensus         2 ~m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   81 (195)
T 3bc1_A            2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE   81 (195)
T ss_dssp             ----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred             CCcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence            45555667789999999999999999999999887665333333221   12222222         6789999999999


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (670)
                      .+...+..+++.+|++|+|||++++.+++.+. .|+..+....  .++|+++|+||+|+...+.+  ..+....++..++
T Consensus        82 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  158 (195)
T 3bc1_A           82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRAV--KEEEARELAEKYG  158 (195)
T ss_dssp             GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence            99999999999999999999999999999987 4888887654  58999999999999765544  3345567777776


Q ss_pred             cCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          149 EIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       149 ~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                        .+++++||++|.||+++|+.+.+.+.
T Consensus       159 --~~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          159 --IPYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             --CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence              37999999999999999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=207.82  Aligned_cols=165  Identities=19%  Similarity=0.315  Sum_probs=127.4

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      .....+||+|+|++|||||||+++|+++.+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            345679999999999999999999999887665333333222  333344556889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|+|||++++.+++.+. .|+..++... .++|+++|+||+|+.+.+.+  ..+....+++.+.. .++++|||++|.||
T Consensus       102 iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi  177 (192)
T 2il1_A          102 IILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI--TRQQGEKFAQQITG-MRFCEASAKDNFNV  177 (192)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTSTT-CEEEECBTTTTBSH
T ss_pred             EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CeEEEEeCCCCCCH
Confidence            99999999999999987 4888887654 47999999999999766554  23445666666533 37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+.+.+.+.
T Consensus       178 ~~l~~~l~~~i~  189 (192)
T 2il1_A          178 DEIFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.91  E-value=5.9e-24  Score=203.93  Aligned_cols=164  Identities=19%  Similarity=0.321  Sum_probs=139.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   95 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAA   95 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--CHHHHTTCS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--HHHHhccCC
Confidence            456799999999999999999999999988887788888888788888866678899999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+.+.+ ...++.+++++.+++. ++++||++| |+
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  171 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNV  171 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999998876433   69999999999997643 3467788899999886 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|++|.+.+.
T Consensus       172 ~~l~~~l~~~i~  183 (191)
T 2a5j_A          172 EEAFINTAKEIY  183 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=7.9e-24  Score=205.76  Aligned_cols=165  Identities=21%  Similarity=0.340  Sum_probs=130.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCceEEEEEecCChhh-HhhhhchHhhccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALAS  497 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-~~~~~~~~~~~~~  497 (670)
                      ....+||+|+|++|||||||+|+|++....... .++++.++....+.++|....+.+||++|++. +..+  ...+++.
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l--~~~~~~~  111 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQV  111 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH--HHCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhH--HHHHHhh
Confidence            345699999999999999999999976543222 24566566667777786666788999999876 3444  5667899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +|++++|||++++.+|+.+..|...+.......  ++|+++|+||+|+.+.+ ...++.+.++..++++ +++|||++| 
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~--~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~SAk~g~  188 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQH  188 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEeCCCCC
Confidence            999999999999999999999988887543222  69999999999997643 3356677888888875 999999999 


Q ss_pred             ChHHHHHHHHHHHh
Q 005908          576 DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 ~v~~l~~~l~~~~~  589 (670)
                      ||+++|+.|.+.+.
T Consensus       189 ~v~elf~~l~~~i~  202 (211)
T 2g3y_A          189 NVKELFEGIVRQVR  202 (211)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.91  E-value=9.1e-24  Score=204.62  Aligned_cols=163  Identities=15%  Similarity=0.206  Sum_probs=134.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            44679999999999999999999999988766443333322  3334445578999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....+++.++  .++++|||++|.||+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVK  159 (203)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSSH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCccccc--CHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence            99999999999999884 888887654 58999999999999876555  3345667777776  379999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+++.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (203)
T 1zbd_A          160 QTFERLVDVIC  170 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=3.9e-24  Score=205.38  Aligned_cols=164  Identities=19%  Similarity=0.257  Sum_probs=134.2

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+|+|++|||||||+++|++..+.....++.+.+.  ....+....+.+.+|||||++++...+..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            45679999999999999999999999987665444444333  3344556678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+. .|+..+.... +++|+++|+||+|+.+.+.+  ..+....+++.++  .++++|||++|.||+
T Consensus       100 ilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIG--AIVVETSAKNAINIE  174 (192)
T ss_dssp             EEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTT--CEEEECBTTTTBSHH
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHH
Confidence            9999999999999987 4888887654 47999999999999765544  3345667777776  379999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      ++|+.+.+.+..
T Consensus       175 ~l~~~l~~~i~~  186 (192)
T 2fg5_A          175 ELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.91  E-value=1e-23  Score=199.99  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=143.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|.+|||||||+|+|++..+...+.+|.+..+....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   86 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--APMYYRGAA   86 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG--THHHHTTCS
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh--hHHHhccCC
Confidence            345699999999999999999999999988877788888787777888766778899999999988887  788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+.+.+. ..++++++++..+++ ++++||++| |+
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  162 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQGNP---NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSAKTATNV  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCSSSCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCH
Confidence            999999999999999999999998876543   689999999999976443 467888899888876 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|++|.+.+..
T Consensus       163 ~~l~~~l~~~~~~  175 (181)
T 2efe_B          163 KEIFYEIARRLPR  175 (181)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=2.4e-24  Score=208.51  Aligned_cols=168  Identities=17%  Similarity=0.296  Sum_probs=138.2

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      .....+||+|+|.+|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+  +..+++.+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~   96 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL--PYSFIIGV   96 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC--CGGGTTTC
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHH--HHHHHhcC
Confidence            345679999999999999999999999999888778887766 566666667788899999999888887  78899999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      |++++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+.+.+. ...+.+.+++.++++ ++++||++| |
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~  173 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT--RVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESSARENQL  173 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEeCCCCCC
Confidence            99999999999999999999999987764433  689999999999976443 367888999999985 999999999 9


Q ss_pred             hHHHHHHHHHHHhCCC
Q 005908          577 LNNVFSRIIWAAEHPH  592 (670)
Q Consensus       577 v~~l~~~l~~~~~~~~  592 (670)
                      ++++|+.|.+.+....
T Consensus       174 v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          174 TQGIFTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999886544

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=4.6e-24  Score=207.51  Aligned_cols=166  Identities=23%  Similarity=0.366  Sum_probs=131.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      +..+||+|+|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||||++++...+..+++.+|++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            456899999999999999999999998876644333332 2333444556889999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      |||++++.+++.+...|...++...+++|+++|+||+|+...            +.+  ..+....++..++. .++++|
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~  179 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPV--RTDDGRAMAVRIQA-YDYLEC  179 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCC--CHHHHHHHHHhcCC-CEEEEe
Confidence            999999999999966799999887779999999999999754            222  22334556666653 379999


Q ss_pred             CcccCCCchHHHHHHHHHHcCC
Q 005908          157 SATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      ||++|.||+++|+.+.+.++.+
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.91  E-value=8.6e-24  Score=200.00  Aligned_cols=164  Identities=19%  Similarity=0.357  Sum_probs=143.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ..+.+||+|+|.+|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   89 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAA   89 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--HHHHHHTCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh--HHHHhccCC
Confidence            356799999999999999999999999988777788887787778888866678899999999888877  788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||++| |+
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  165 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENV  165 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999988876543   69999999999997543 3367888899988875 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|+++.+.+.
T Consensus       166 ~~l~~~l~~~i~  177 (179)
T 1z0f_A          166 EDAFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998774

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.91  E-value=1.7e-24  Score=204.89  Aligned_cols=165  Identities=20%  Similarity=0.197  Sum_probs=130.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ..+.+||+|+|++|||||||+++|+++.+.... +++..... ....+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            456799999999999999999999998876543 33222222 2233333 35889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC---CCCC-EEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +|+|||++++.+++.+. .|+..+....   .+.| +++|+||+|+.+.+.+  ..+....+++.++  .+++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENG--FSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCC
Confidence            99999999999999887 4888886632   2455 8999999999765554  2344566777776  37999999999


Q ss_pred             CCchHHHHHHHHHHcCC
Q 005908          162 IQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~  178 (670)
                      .||+++|+++.+.+...
T Consensus       158 ~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999988654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=5.7e-24  Score=199.29  Aligned_cols=160  Identities=20%  Similarity=0.271  Sum_probs=129.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      +.+||+++|++|||||||+++|+++.+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            568999999999999999999999987765444333322  333445567889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCC---CCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |||++++.+++.+.. |+..+... .+++|+++|+||+|+...   +.+  ..+....++...+  .+++++||++|.||
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  156 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKV--AREEGEKLAEEKG--LLFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTH
T ss_pred             EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence            999999999999885 88777654 368999999999999765   333  3344566666665  37999999999999


Q ss_pred             hHHHHHHHHHH
Q 005908          165 PDVFYYAQKAV  175 (670)
Q Consensus       165 ~~l~~~i~~~~  175 (670)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~i  167 (170)
T 1ek0_A          157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.91  E-value=2.9e-24  Score=201.43  Aligned_cols=160  Identities=19%  Similarity=0.225  Sum_probs=119.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-hhHHHhccCCEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVVL   88 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ii~   88 (670)
                      .+||+++|++|||||||+++|++..+...  .+++.........+....+.+.+|||||++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999998765443  2222222334445556678899999999988766 56678899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCC--CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~--~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.+++.+.. |+..+....+  ++|+++|+||+|+.+.+.+  ..+....+++.++.  ++++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLSC--KHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccC--CHHHHHHHHHHcCC--cEEEecCccCCCHHH
Confidence            999999999999985 7777766543  8999999999999866655  34556777777763  799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+.+.+.+.
T Consensus       157 l~~~l~~~i~  166 (169)
T 3q85_A          157 LFEGAVRQIR  166 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.91  E-value=3.6e-24  Score=202.60  Aligned_cols=171  Identities=18%  Similarity=0.244  Sum_probs=130.1

Q ss_pred             CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (670)
Q Consensus         1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (670)
                      |++......++.+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..
T Consensus         3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~   82 (179)
T 2y8e_A            3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   82 (179)
T ss_dssp             ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHH
T ss_pred             cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHH
Confidence            3344444456779999999999999999999999887766433333222  23334455678999999999999999999


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      +++.+|++++|||++++.+++.+.. |+..+... ..++|+++|+||+|+.+.+.+  ..+....++...+  .+++++|
T Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S  157 (179)
T 2y8e_A           83 YIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELN--VMFIETS  157 (179)
T ss_dssp             HHHTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEEEB
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCcccccCcC--CHHHHHHHHHHcC--CeEEEEe
Confidence            9999999999999999999998874 77777553 358999999999999766554  2344455666665  3799999


Q ss_pred             cccCCCchHHHHHHHHHHc
Q 005908          158 ATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~  176 (670)
                      |++|.|++++|+.+.+.+.
T Consensus       158 a~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          158 AKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             TTTTBSHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999987653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.91  E-value=2.8e-24  Score=211.32  Aligned_cols=172  Identities=16%  Similarity=0.259  Sum_probs=138.4

Q ss_pred             CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (670)
Q Consensus         1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (670)
                      |+++........+||+|+|++|||||||+++|+.+.+...+.++.+.+.  ....+....+.+.+|||||++.+...+..
T Consensus         4 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   83 (221)
T 3gj0_A            4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG   83 (221)
T ss_dssp             --CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH
T ss_pred             cccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH
Confidence            4556666777889999999999999999999877766555333333333  34445566789999999999999999999


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +++.+|++|+|||++++.+++.+. .|+..+....+++|+++|+||+|+.+....    .....++...+  .++++|||
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--~~~~~~Sa  156 (221)
T 3gj0_A           84 YYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISA  156 (221)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT--CEEEECBG
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcC--CEEEEEeC
Confidence            999999999999999999999998 499999887779999999999999765432    23344555555  37999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      ++|.||+++|+++.+.+....
T Consensus       157 ~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          157 KSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             GGTBTTTHHHHHHHHHHHTCT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc
Confidence            999999999999999986554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.91  E-value=3.5e-24  Score=200.93  Aligned_cols=163  Identities=17%  Similarity=0.260  Sum_probs=125.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+++|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++++...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999887665333333322  3344556678899999999998888888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      ++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+ . .+....+++.++  .+++++||++|.||+
T Consensus        83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  157 (170)
T 1z08_A           83 ILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERHV-S-IQEAESYAESVG--AKHYHTSAKQNKGIE  157 (170)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBSHH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CeEEEecCCCCCCHH
Confidence            9999999999999988 4888876532 47999999999999776555 3 344567777776  379999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+++.+.+.
T Consensus       158 ~l~~~l~~~~~  168 (170)
T 1z08_A          158 ELFLDLCKRMI  168 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.91  E-value=5.9e-24  Score=199.22  Aligned_cols=163  Identities=22%  Similarity=0.292  Sum_probs=140.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+|+|+++.+...+.++.+..+....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~   81 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--APMYYRGAQA   81 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh--hHHhccCCCE
Confidence            35699999999999999999999999888877788887777777777766778899999999988887  7888999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.+.+ ...++..++++..+++ ++++||++| |++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~  157 (170)
T 1r2q_A           82 AIVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVN  157 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            99999999999999999999988876543   69999999999997543 3367788888888875 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|++|.+.+.
T Consensus       158 ~l~~~i~~~~~  168 (170)
T 1r2q_A          158 EIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHHHHh
Confidence            99999988653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=9e-24  Score=200.23  Aligned_cols=168  Identities=20%  Similarity=0.274  Sum_probs=126.4

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (670)
                      .....+.+||+++|++|||||||+++|++..+...  .+++..... ....+....+.+.+|||||++.+...+..+++.
T Consensus         4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   83 (180)
T 2g6b_A            4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   83 (180)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence            34456789999999999999999999999887532  333222222 222344556789999999999998889999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      +|++++|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....+++.++  .+++++||++|
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~  158 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG--LPFMETSAKTG  158 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT--CCEEECCTTTC
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEeCCCC
Confidence            999999999999999998874 888887654 58999999999999876655  3344566777766  37999999999


Q ss_pred             CCchHHHHHHHHHHcCC
Q 005908          162 IQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~  178 (670)
                      .||+++|+++.+.+...
T Consensus       159 ~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          159 LNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             TTHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999887643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.91  E-value=1.6e-23  Score=197.92  Aligned_cols=168  Identities=15%  Similarity=0.280  Sum_probs=139.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  ...+++.+|+
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~   82 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL--RTPFYRGSDC   82 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH--HGGGGTTCSE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhh--HHHHHhcCCE
Confidence            45699999999999999999999999887777788887777777888866678899999999988887  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+.+.....++++++++.....+++++||++| |++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            99999999999999999999888765431 0116899999999999865566788888888555456999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|+.+.+.+..
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.91  E-value=8.5e-24  Score=197.60  Aligned_cols=162  Identities=20%  Similarity=0.333  Sum_probs=137.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+|+|.++.+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~i   79 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence            589999999999999999999999888777777776554 55667766778889999999888877  778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.+++.+..|+..+.......  +.|+++|+||+|+.+.+. ..++.+++++.++..+++++||++| |++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence            9999999999999999998887764433  699999999999976443 3677888888884445999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |++|.+.+.
T Consensus       158 ~~~l~~~i~  166 (167)
T 1c1y_A          158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.91  E-value=6.7e-24  Score=203.84  Aligned_cols=166  Identities=17%  Similarity=0.198  Sum_probs=133.5

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      .+...+.+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++++...+..+++.+
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34455679999999999999999999999988766444333222  3344455678999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      |++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++...+  .++++|||++|.
T Consensus        99 d~vi~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~  173 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNG--LLFLETSALDST  173 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEEECTTTCT
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCC
Confidence            99999999999999998874 888886643 58999999999999765544  2344566666665  379999999999


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++|+.+.+.+.
T Consensus       174 gi~~l~~~l~~~i~  187 (193)
T 2oil_A          174 NVELAFETVLKEIF  187 (193)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.91  E-value=8e-24  Score=202.60  Aligned_cols=164  Identities=21%  Similarity=0.367  Sum_probs=142.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .++.+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   96 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--TTAYYRGAM   96 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--GGGGGTTCS
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--HHHhccCCC
Confidence            456799999999999999999999999988777788877777777777766678899999999888877  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+.+.+. ..++++++++.+++. ++++||++| |+
T Consensus        97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  172 (189)
T 2gf9_A           97 GFLLMYDIANQESFAAVQDWATQIKTYSWD---NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINV  172 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            999999999999999999999998876532   699999999999976433 367788999999975 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|++|.+.+.
T Consensus       173 ~~l~~~l~~~i~  184 (189)
T 2gf9_A          173 KQVFERLVDVIC  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998774

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.4e-23  Score=201.66  Aligned_cols=163  Identities=24%  Similarity=0.390  Sum_probs=140.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~   92 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDV   92 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEESSSCEEEEEEECCCCSSSSTTT--GGGGCTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCcchhHH--HHHhcCCCCE
Confidence            45699999999999999999999999887777788876653 45667766678889999999888887  7789999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.+|..+. .|+..+.....    +.|+++|+||+|+.+.             ....+++.++++.++..+
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  168 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  168 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence            99999999999999987 78888887643    6999999999999763             234678888999999866


Q ss_pred             cEEeecccC-ChHHHHHHHHHHHhC
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++++||++| |++++|++|.+.+..
T Consensus       169 ~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          169 YVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999 999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=202.25  Aligned_cols=165  Identities=18%  Similarity=0.245  Sum_probs=135.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            34579999999999999999999999887766433333222  3334444568899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  ..+....++..++  .+++++||++|.||+
T Consensus        93 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVE  167 (196)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEEECTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHH
Confidence            99999999999999885 88888665 347999999999999877665  3345577777776  379999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 005908          166 DVFYYAQKAVLHP  178 (670)
Q Consensus       166 ~l~~~i~~~~~~~  178 (670)
                      ++|+++.+.+...
T Consensus       168 ~l~~~l~~~i~~~  180 (196)
T 3tkl_A          168 QSFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.91  E-value=7.6e-24  Score=198.14  Aligned_cols=162  Identities=15%  Similarity=0.286  Sum_probs=141.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+|+|++|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+  ...+++.+|+
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   80 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQA   80 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--CHHHHTTCCE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--HHHHhcCCCE
Confidence            35699999999999999999999999888777788887787788888766678899999999888887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|+|++++.+++.+..|+..+.....    +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||++| |++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  155 (168)
T 1z2a_A           81 CVLVFSTTDRESFEAISSWREKVVAEVG----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVS  155 (168)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHC----SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEecCCCCCHH
Confidence            9999999999999999999998877652    69999999999997643 3467788899999985 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      +++++|.+.+.
T Consensus       156 ~l~~~l~~~~~  166 (168)
T 1z2a_A          156 EVFKYLAEKHL  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998775

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.91  E-value=1.6e-23  Score=203.45  Aligned_cols=164  Identities=23%  Similarity=0.352  Sum_probs=144.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|++|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--TSSYYRGSHG   83 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGGTTCSE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHhccCCCE
Confidence            45799999999999999999999999988877788888888888888866678899999999988887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.++..+..|+..+......   +.|+++|+||+|+.+.+ ...+....+++..+++ ++++||++| |++
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVE  159 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            99999999999999999999998876533   69999999999998744 3467788888888875 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|++|.+.+..
T Consensus       160 ~l~~~l~~~i~~  171 (206)
T 2bcg_Y          160 DAFLTMARQIKE  171 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.91  E-value=1.9e-23  Score=202.39  Aligned_cols=163  Identities=19%  Similarity=0.337  Sum_probs=142.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|.+.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI--TTAYYRGAMG   83 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTGGGCSE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch--HHHhhcCCCE
Confidence            45799999999999999999999999988777788877777777777766778899999999988887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.+++.+..|+..+......   +.|+++|+||+|+.+.+ ...+.++++++.++++ ++++||++| |++
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVK  159 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCS---SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBTTTTBSSH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEECCCCCCHH
Confidence            99999999999999999999998876532   69999999999998744 3467888899999985 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|++|.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (203)
T 1zbd_A          160 QTFERLVDVIC  170 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.91  E-value=1.3e-23  Score=196.92  Aligned_cols=162  Identities=21%  Similarity=0.308  Sum_probs=141.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|.+|||||||+|+|++..+...+.++.+..+....+...+....+.+||++|.+.+..+  ...+++.+|++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~   82 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL--APMYYRGSAAA   82 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--THHHHTTCSEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcc--cHhhCcCCCEE
Confidence            4699999999999999999999999987777788887777777777766678889999999888887  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.+.+. ..+..+.+++.++.+ ++++||++| |+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE  158 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHHH
Confidence            9999999999999999999988876433   689999999999986433 367788888888875 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.|.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=9.3e-24  Score=202.92  Aligned_cols=166  Identities=18%  Similarity=0.294  Sum_probs=145.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   90 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--TPSYYRGAQG   90 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--HHHHHTTCCE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh--hHHHhccCCE
Confidence            34699999999999999999999999988777788887777777888866778899999999888887  7888999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      +|+|||++++.++..+..|+..+.......  ++|+++|+||+|+.+.....++..++++..++. ++++||++| |+++
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  167 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRN--DIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQC  167 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCS--CCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecCCCCCCHHH
Confidence            999999999999999999999887765333  699999999999976555677888899988876 999999999 9999


Q ss_pred             HHHHHHHHHhCC
Q 005908          580 VFSRIIWAAEHP  591 (670)
Q Consensus       580 l~~~l~~~~~~~  591 (670)
                      +|++|.+.+...
T Consensus       168 l~~~l~~~~~~~  179 (195)
T 1x3s_A          168 AFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh
Confidence            999999988643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=2.6e-24  Score=204.66  Aligned_cols=163  Identities=19%  Similarity=0.362  Sum_probs=113.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+|+|++|||||||+++|.+..+...+.+|++.++....+.++|....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--TTAYYRGAMG   83 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh--HHHHHhcCCE
Confidence            46799999999999999999999998877666677777777777777766678899999999888887  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||++| |++
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVE  159 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            99999999999999999999998876433   69999999999998644 3477888999999975 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|+.|.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (183)
T 2fu5_C          160 NAFFTLARDIK  170 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=4.9e-24  Score=200.20  Aligned_cols=161  Identities=20%  Similarity=0.263  Sum_probs=128.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +.+||+++|++|||||||+|+|+++.+.... ++....+..........+.+.+|||||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            4689999999999999999999998876553 333333333334455567899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      ||++++.+++.+.. |+..+...   .+++|+++|+||+|+...+.+  ..+....+...++  .+++++||++|.||++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV--QSSEAEALARTWK--CAFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEecCCCCcCHHH
Confidence            99999999988874 77666553   247999999999999766554  2334456666665  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+++.+.+.
T Consensus       157 l~~~l~~~~~  166 (172)
T 2erx_A          157 LFQELLNLEK  166 (172)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=205.57  Aligned_cols=167  Identities=18%  Similarity=0.261  Sum_probs=125.7

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe--EeCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      +....+.+||+|+|++|||||||+++|++..+.....++.+..  .....+....+.+.+|||||++.+...+..+++.+
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            3445668999999999999999999999998765533333222  23344555678899999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCC------CCCccchhhhhhHHHHHhccCCeEEEe
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRG------DHNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      |++|+|||++++.+++.+. .|+..++... .++|+++|+||+|+.+      .+.+  ..+....++..++  .++++|
T Consensus       102 d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~  176 (199)
T 2p5s_A          102 DGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLAMTYG--ALFCET  176 (199)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHHHHHT--CEEEEC
T ss_pred             CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccccccccc--CHHHHHHHHHHcC--CeEEEe
Confidence            9999999999999999987 4888887643 4799999999999862      2333  3344566777776  379999


Q ss_pred             CcccCCCchHHHHHHHHHHcC
Q 005908          157 SATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      ||++|.||+++|+++.+.+..
T Consensus       177 SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          177 SAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CTTTCTTHHHHHHHHHHHHTC
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999988753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=197.30  Aligned_cols=163  Identities=18%  Similarity=0.305  Sum_probs=125.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh--HhhhhchHhhccccc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG--VKKILSNKEALASCD  499 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~--~~~~~~~~~~~~~ad  499 (670)
                      +.+||+|+|++|||||||+|+|.+..+...+. +++.++....+..+|....+.+||++|++.  +..+  ...+++.+|
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~   79 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS--QESCLQGGS   79 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHH--HHHTTTSCS
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhh--HHhhcccCC
Confidence            46899999999999999999999998876653 455555666677776667888999999877  3444  567889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+.+.+ ...++.+.++..++++ ++++||++| |+
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  156 (175)
T 2nzj_A           80 AYVIVYSIADRGSFESASELRIQLRRTHQAD--HVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETSATLQHNV  156 (175)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhccC--CCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEecCCCCCH
Confidence            9999999999999999999998887754332  69999999999998644 3366777888888875 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|++|.+.+..
T Consensus       157 ~~l~~~l~~~~~~  169 (175)
T 2nzj_A          157 AELFEGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.8e-24  Score=206.23  Aligned_cols=165  Identities=19%  Similarity=0.330  Sum_probs=144.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .++.+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  ...+++.+|
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   97 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI--TTAYYRGAM   97 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH--HHHHHTTCC
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHccCC
Confidence            356799999999999999999999999888777777777788788888877888999999999888887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+ ...++.+.+++.++++ ++++||++| |+
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  173 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQIKTYSWD---NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEASAKENISV  173 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            999999999999999999999999876533   69999999999997643 3477788899999985 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|+.|.+.+..
T Consensus       174 ~~l~~~l~~~i~~  186 (191)
T 3dz8_A          174 RQAFERLVDAICD  186 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.91  E-value=1.1e-23  Score=199.76  Aligned_cols=165  Identities=18%  Similarity=0.234  Sum_probs=132.8

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ...+.+||+|+|++|||||||+++|++..+....+++.+... ....+....+.+.+|||||++++...+..+++.+|++
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            345779999999999999999999999988777555443332 2233444467899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHH-Hhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      ++|||++++.+++.+.. |+..+ +.. ..++|+++|+||+|+...+.+  ..+....++...+  .+++++||++|.||
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv  159 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHH--VAYFEASAKLRLNV  159 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSH
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEecCCCCCCH
Confidence            99999999999999885 77666 433 348999999999999776555  2344566666665  37999999999999


Q ss_pred             hHHHHHHHHHHcC
Q 005908          165 PDVFYYAQKAVLH  177 (670)
Q Consensus       165 ~~l~~~i~~~~~~  177 (670)
                      +++|+++.+.+..
T Consensus       160 ~~l~~~l~~~~~~  172 (181)
T 2fn4_A          160 DEAFEQLVRAVRK  172 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=9.5e-24  Score=197.77  Aligned_cols=161  Identities=20%  Similarity=0.302  Sum_probs=139.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+|+|++..+...+.++.+.++....+..++....+.+||++|++.+..+  +..+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~i   80 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--APXYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh--hhhhhccCcEEE
Confidence            589999999999999999999999888777788887777777777766678889999999888887  788899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC----cccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY----TMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      +|+|++++.++..+..|+..+......   +.|+++|+||+|+.+.    ....+..+++++..+++ ++++||++| |+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  156 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQASK---DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENV  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999988876532   6999999999999753    23367788888888876 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|++|.+.+.
T Consensus       157 ~~l~~~l~~~i~  168 (170)
T 1ek0_A          157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.91  E-value=6.6e-24  Score=203.17  Aligned_cols=165  Identities=19%  Similarity=0.318  Sum_probs=128.1

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccch-hhhHHHhccC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRA   83 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~a   83 (670)
                      ...++.+||+|+|++|||||||+++|+++.+.....++.+ ... ....+....+.+.+|||||++++. ..+..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            3456679999999999999999999999887765333333 222 333444556899999999999887 7888999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      |++|+|||++++.+++.+.. |...+...  ..++|+++|+||+|+.+.+.+  ..+....++..++  .+++++||++|
T Consensus        95 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~  169 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHS--MPLFETSAKNP  169 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEECCSSSG
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--CHHHHHHHHHHcC--CEEEEEeCCcC
Confidence            99999999999999999885 88888665  358999999999999766554  3344567777766  37999999999


Q ss_pred             ---CCchHHHHHHHHHHc
Q 005908          162 ---IQVPDVFYYAQKAVL  176 (670)
Q Consensus       162 ---~gi~~l~~~i~~~~~  176 (670)
                         .||+++|+.+.+.+.
T Consensus       170 ~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          170 NDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GGGSCHHHHHHHHC----
T ss_pred             CcccCHHHHHHHHHHHHh
Confidence               999999999877653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.91  E-value=6.3e-24  Score=203.99  Aligned_cols=165  Identities=17%  Similarity=0.297  Sum_probs=135.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d  100 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAK  100 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHHHHHHCS
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH--HHHHhcCCC
Confidence            456799999999999999999999999888777788887787788888866678899999999988887  788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++|+|||++++.+++.+..|+..+......   +.|+++|+||+|+.+.+. ..++++++++.+...+++++||++| |+
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  177 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV  177 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence            999999999999999999998888776543   699999999999976433 3667788888753345999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|+.|.+.+.
T Consensus       178 ~~l~~~l~~~i~  189 (192)
T 2il1_A          178 DEIFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=7e-24  Score=204.32  Aligned_cols=164  Identities=21%  Similarity=0.306  Sum_probs=130.8

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      +...+.+||+|+|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||||++. ...+..+++.+|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            345678999999999999999999999998876644433332 23344555678899999999988 7778899999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC-
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-  162 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~-  162 (670)
                      +++|||++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+  ..+....+++.++  .++++|||++|. 
T Consensus       102 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~~  176 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELA--CAFYECSACTGEG  176 (196)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHhC--CeEEEECCCcCCc
Confidence            999999999999999874 87777653  358999999999999776554  3344566777775  379999999999 


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++|+++.+.+.
T Consensus       177 gi~~l~~~l~~~i~  190 (196)
T 2atv_A          177 NITEIFYELCREVR  190 (196)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.91  E-value=2.2e-23  Score=199.06  Aligned_cols=163  Identities=20%  Similarity=0.358  Sum_probs=139.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+|+|++|||||||+|+|++..+...+.+|+...+ ...+..++....+.+||++|++.+..+  ...+++.+|++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~   79 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF   79 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTT--HHHHHHHCSEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHH--HHHHHhcCCEE
Confidence            469999999999999999999999988777777775443 355666656667889999999998888  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ++|||++++.+++.+..|+..+.......  +.|+++|+||+|+.+.....+..+.+++.++++ ++++||++| |++++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A           80 LCVFAINNTKSFEDIHHYREQIKRVKDSE--DVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETSAKTRQGVDDA  156 (189)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            99999999999999999999998865544  799999999999987666788899999999976 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      |++|.+.+..
T Consensus       157 ~~~l~~~~~~  166 (189)
T 4dsu_A          157 FYTLVREIRK  166 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=204.76  Aligned_cols=165  Identities=21%  Similarity=0.362  Sum_probs=133.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+..+||+|+|.+|||||||+|+|+++.+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d   99 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA   99 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC--CHHHHTTCS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH--HHHHhccCC
Confidence            456799999999999999999999999988877788887787788888866678899999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++|+|||++++.+++.+..|+..+......   +.|+++|+||+|+...+ ....++.++++..++. ++++||++| |+
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~g~gi  175 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV  175 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999988776543   69999999999997543 3367788888888876 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|++|.+.+..
T Consensus       176 ~~l~~~l~~~i~~  188 (200)
T 2o52_A          176 EEAFLKCARTILN  188 (200)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.91  E-value=8.6e-24  Score=200.38  Aligned_cols=167  Identities=18%  Similarity=0.351  Sum_probs=141.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+..+|....+.+||++|++.+..+  ...+++.+|
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d   82 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAM--REQYMRAGH   82 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCC--HHHHHHHCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHhhCC
Confidence            346799999999999999999999999888777788877665 56667755678889999999888877  778899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.++..+..|+..+.......  +.|+++|+||+|+.+.+ ...++.+.++...++. ++++||++| |+
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv  159 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLNV  159 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCH
Confidence            9999999999999999999998886554333  69999999999997643 3367788888888875 999999999 99


Q ss_pred             HHHHHHHHHHHhCCC
Q 005908          578 NNVFSRIIWAAEHPH  592 (670)
Q Consensus       578 ~~l~~~l~~~~~~~~  592 (670)
                      +++|++|.+.+....
T Consensus       160 ~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          160 DEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999886433

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.91  E-value=1.2e-23  Score=198.71  Aligned_cols=164  Identities=21%  Similarity=0.269  Sum_probs=128.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+++|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45679999999999999999999999887665433333322  2333445567899999999999998889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      ++|||++++.+++.+. .|...+....     .++|+++|+||+|+. .+.+  ..+....++..... .+++++||++|
T Consensus        84 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~  158 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQV--STEEAQAWCRDNGD-YPYFETSAKDA  158 (177)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSS--CHHHHHHHHHHTTC-CCEEECCTTTC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccc-cccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence            9999999999999887 4888776532     578999999999997 3333  23445566654433 37999999999


Q ss_pred             CCchHHHHHHHHHHcC
Q 005908          162 IQVPDVFYYAQKAVLH  177 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~  177 (670)
                      .||+++|+.+.+.+..
T Consensus       159 ~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          159 TNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.9e-23  Score=203.82  Aligned_cols=164  Identities=25%  Similarity=0.412  Sum_probs=142.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....++|+|+|++|||||||+|+|++..+...+.+|++.++....+.++|....+.+||++|++.+..+  +..+++.+|
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   94 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI--TTAYYRGAM   94 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC--CHHHHTTCS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCC
Confidence            456799999999999999999999999887777788888888888888866678899999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+.......+..+++++.++++ ++++||++| |++
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  170 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVN  170 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTT---CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBTTTTBSSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            999999999999999999999988876543   589999999999965555577888899999875 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|++|.+.+.
T Consensus       171 ~l~~~l~~~~~  181 (213)
T 3cph_A          171 EIFFTLAKLIQ  181 (213)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.1e-23  Score=202.25  Aligned_cols=164  Identities=20%  Similarity=0.330  Sum_probs=142.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ..+.+||+|+|.+|||||||+|+|++..+...+.++.+..+....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   97 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL--APMYYRGSA   97 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG--THHHHTTCS
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh--hHHhhccCC
Confidence            356799999999999999999999999887777788887777777888877788999999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+++.+..|+..+......   ++|+++|+||+|+.+. ....++++++++.++++ ++++||++| |+
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  173 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEHGPE---NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAINI  173 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECBTTTTBSH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCH
Confidence            999999999999999999999998876532   6999999999999753 33467888899888875 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|+.|.+.+.
T Consensus       174 ~~l~~~l~~~i~  185 (192)
T 2fg5_A          174 EELFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.91  E-value=1.2e-23  Score=200.54  Aligned_cols=165  Identities=19%  Similarity=0.339  Sum_probs=143.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+..+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   84 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--TRSYYRGAA   84 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTSTTCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHHhcCC
Confidence            356799999999999999999999999988887788887777788888866678889999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+ ....+..++++..+++ ++++||++| |+
T Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  160 (186)
T 2bme_A           85 GALLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENV  160 (186)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecCCCCCCH
Confidence            999999999999999999999888776443   69999999999997533 3367788888888876 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|+++.+.+..
T Consensus       161 ~~l~~~l~~~~~~  173 (186)
T 2bme_A          161 EEAFVQCARKILN  173 (186)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.91  E-value=3.1e-23  Score=200.71  Aligned_cols=161  Identities=20%  Similarity=0.283  Sum_probs=139.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-----------------------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-----------------------------  471 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~-----------------------------  471 (670)
                      ++.+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            467999999999999999999999999887777888887887778877544                             


Q ss_pred             --------eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 005908          472 --------KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD  543 (670)
Q Consensus       472 --------~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~  543 (670)
                              ..+.+||++|++.+..+  +..+++.+|++++|+|++++.+++.+..|+..+....     +.|+++|+||+
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~piilv~NK~  157 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASI--VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-----NYIIILVANKI  157 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTT--HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-----CCEEEEEEECT
T ss_pred             cccCccceeEEEEEECCCcHHHHHH--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEECC
Confidence                    78889999999888887  7888999999999999999999999999999888764     58999999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      |+.......++++++++..+++ ++++||++| |++++|++|.+.+.
T Consensus       158 D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          158 DKNKFQVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             TCC-CCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHH
Confidence            9444445578889999998875 999999999 99999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.91  E-value=1.1e-23  Score=200.69  Aligned_cols=161  Identities=17%  Similarity=0.294  Sum_probs=134.0

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      .....+||+|+|++|||||||+|+|+++.+...+.+| ...+. ..+.++|....+.+||++|++.+.       +++.+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~   86 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFK-KEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV   86 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEE-EEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEE-EEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence            3456799999999999999999999999988776666 33343 667777666788899999987654       66789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      |++++|||++++.+|+.+..|+..+.......  +.|+++|+||+|+..   .....++++++++.++..+++++||++|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  164 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS--EVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG  164 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGG--GSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence            99999999999999999999999998764322  689999999999952   2344778899999998556999999999


Q ss_pred             -ChHHHHHHHHHHHhC
Q 005908          576 -DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~  590 (670)
                       |++++|+++.+.+..
T Consensus       165 ~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          165 LNVERVFQDVAQKVVA  180 (184)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence             999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.5e-24  Score=208.13  Aligned_cols=164  Identities=16%  Similarity=0.224  Sum_probs=134.8

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            34579999999999999999999999887665322222 222 3444556788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+.+.+  ..+....++..++.  ++++|||++|.||+
T Consensus       100 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLGF--DFFEASAKENISVR  174 (191)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHH
Confidence            99999999999999885 998887754 58999999999999766555  34456677777763  79999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      ++|+.+.+.+..
T Consensus       175 ~l~~~l~~~i~~  186 (191)
T 3dz8_A          175 QAFERLVDAICD  186 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.91  E-value=1.2e-23  Score=200.49  Aligned_cols=162  Identities=20%  Similarity=0.297  Sum_probs=137.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|++|||||||+|+|.+..+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~   81 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA   81 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhh--HHhhcCCCcE
Confidence            46799999999999999999999999888777778776554 44666766778899999999988887  7788999999


Q ss_pred             EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.+|+.+ ..|+..+.....    +.|+++|+||+|+.+.             ....++++++++.++..+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            9999999999999998 688888877643    6999999999999742             234677888999988656


Q ss_pred             cEEeecc-cC-ChHHHHHHHHHHHh
Q 005908          567 PIPVSMK-SK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       567 ~~~vSA~-~g-~v~~l~~~l~~~~~  589 (670)
                      ++++||+ +| |++++|+.+.+.+.
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHh
Confidence            9999999 68 99999999998875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.91  E-value=1e-23  Score=196.84  Aligned_cols=161  Identities=22%  Similarity=0.363  Sum_probs=137.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+|+|.++.+...+.+|++..+ ...+..++....+.+||++|++.+..+  ...+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~~~~i   79 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFI   79 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCEEE
Confidence            58999999999999999999999988877777776544 456667766677889999999888877  778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.+++.+..|+..+.......  +.|+++|+||+|+.+.+ ...++.+++++.++++ ++++||++| |++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVDEL  156 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEecCCCCcCHHHH
Confidence            9999999999999999999888765433  69999999999987543 3467788889888876 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      +++|.+.+.
T Consensus       157 ~~~l~~~~~  165 (167)
T 1kao_A          157 FAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.91  E-value=1.8e-23  Score=203.09  Aligned_cols=164  Identities=17%  Similarity=0.270  Sum_probs=133.6

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45679999999999999999999999988766433333 222 2334445567899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+.... +++|+++|+||+|+...+.+  ..+....++...+  .+++++||++|.||+
T Consensus        85 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVE  159 (206)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence            99999999999999885 888887653 57999999999999876655  3344566666665  379999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      ++|+++.+.+..
T Consensus       160 ~l~~~l~~~i~~  171 (206)
T 2bcg_Y          160 DAFLTMARQIKE  171 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.91  E-value=1.3e-23  Score=196.43  Aligned_cols=161  Identities=21%  Similarity=0.333  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+|+|.+..+.... ++.+..+ ...+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i   77 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWL--PGHCMAMGDAYV   77 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhh--hhhhhhhCCEEE
Confidence            489999999999999999999987765443 3444433 345566666778889999999988887  778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.+|+.+..|+..+.......  ++|+++|+||+|+.+.+. ..+..+.++..++++ ++++||++| |++++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  154 (166)
T 3q72_A           78 IVYSVTDKGSFEKASELRVQLRRARQTD--DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQAL  154 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECBGGGTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEeccCCCCCHHHH
Confidence            9999999999999999999988764433  699999999999986443 477778888888875 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      |+++.+.+..
T Consensus       155 ~~~l~~~~~~  164 (166)
T 3q72_A          155 FEGVVRQIRL  164 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.91  E-value=4e-24  Score=202.27  Aligned_cols=169  Identities=20%  Similarity=0.264  Sum_probs=140.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-ceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+.+||+|+|++|||||||+|+|.++.+...+.+|++.++....+.++++ ...+.+||++|++.+..+  +..+++.+|
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d   81 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM--LDKYIYGAQ   81 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT--HHHHHTTCS
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch--hhHHHhhCC
Confidence            45799999999999999999999998887665678777777788888753 468889999999888877  788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+++.+..|+..+...........|+++|+||+|+.+.+ ...++.+++++.++++ ++++||++| |+
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  160 (178)
T 2hxs_A           82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSAKTGDSV  160 (178)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCH
Confidence            99999999999999999999988876532100024489999999997643 3467788899998875 999999999 99


Q ss_pred             HHHHHHHHHHHhCCC
Q 005908          578 NNVFSRIIWAAEHPH  592 (670)
Q Consensus       578 ~~l~~~l~~~~~~~~  592 (670)
                      +++|++|.+.+....
T Consensus       161 ~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          161 FLCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999886543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=2.4e-24  Score=204.91  Aligned_cols=163  Identities=15%  Similarity=0.290  Sum_probs=103.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+||+|+|++|||||||+++|++..+... .+++..... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999998887654 232221121 2233444568999999999999888888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+... .+++|+++|+||+|+.+.+.+  ..+....+++.++  .++++|||++|.||+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVE  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence            99999999999999885 88888764 357999999999999876655  3345567777776  379999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+.+.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (183)
T 2fu5_C          160 NAFFTLARDIK  170 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.91  E-value=2.5e-23  Score=193.87  Aligned_cols=160  Identities=21%  Similarity=0.332  Sum_probs=130.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +.+||+++|++|||||||+++|.+..+....+++.... .....+....+.+.+|||||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            46899999999999999999999988776644433332 23344445578899999999999989999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ||++++.+++.+. .|...+....  .++|+++|+||+|+... ..  ..+....+.+.++  .+++++||++|.|++++
T Consensus        82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l  155 (166)
T 2ce2_X           82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR-TV--ESRQAQDLARSYG--IPYIETSAKTRQGVEDA  155 (166)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHT--CCEEEECTTTCTTHHHH
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc-cc--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHH
Confidence            9999999999987 4888886643  37999999999999763 22  3455667777776  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      ++++.+.+.
T Consensus       156 ~~~l~~~~~  164 (166)
T 2ce2_X          156 FYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=201.75  Aligned_cols=166  Identities=18%  Similarity=0.274  Sum_probs=143.0

Q ss_pred             ccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (670)
Q Consensus       418 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (670)
                      +...+.+||+|+|.+|||||||+|+|++..+...+.+|.+..+....+...+....+.+||++|.+.+..+  +..+++.
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~   97 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI--TSAYYRG   97 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT--HHHHHTT
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhcc
Confidence            33566799999999999999999999999988887788887777777777766778889999999888877  7888999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      +|++|+|||++++.++..+..|+..+......   +.|+++|+||+|+...+ ...++++.+++..++. ++++||++| 
T Consensus        98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  173 (193)
T 2oil_A           98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEA---TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETSALDST  173 (193)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCC
Confidence            99999999999999999999999888765432   69999999999997643 3467788888888875 999999999 


Q ss_pred             ChHHHHHHHHHHHh
Q 005908          576 DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 ~v~~l~~~l~~~~~  589 (670)
                      |++++|+.|.+.+.
T Consensus       174 gi~~l~~~l~~~i~  187 (193)
T 2oil_A          174 NVELAFETVLKEIF  187 (193)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.91  E-value=4.4e-23  Score=199.66  Aligned_cols=162  Identities=16%  Similarity=0.256  Sum_probs=128.1

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCc---------------------------
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDR---------------------------   58 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------------   58 (670)
                      ...+.+||+|+|++|||||||+++|++..+.....++.+...  ....+....                           
T Consensus         3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence            345789999999999999999999999988766444443322  112222222                           


Q ss_pred             ----------eeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           59 ----------VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        59 ----------~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                                +.+.+|||||++.+...+..+++.+|++|+|||++++.+++.+. .|+..+.... ++|+++|+||+| .
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~-~~piilv~NK~D-~  159 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISS-NYIIILVANKID-K  159 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHS-CCEEEEEEECTT-C
T ss_pred             cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhC-CCcEEEEEECCC-c
Confidence                      88999999999999999999999999999999999999999987 4888887654 499999999999 4


Q ss_pred             CCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ..+.+  ..+.+..++...+  .+++++||++|.||+++|+++.+.+.
T Consensus       160 ~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          160 NKFQV--DILEVQKYAQDNN--LLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             C-CCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccC--CHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            33443  3345566777765  37999999999999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.91  E-value=4.2e-23  Score=197.99  Aligned_cols=165  Identities=13%  Similarity=0.257  Sum_probs=141.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceE-EEEEEcCCC---------ceEEEEEecCChhhHhhhh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGG---------NKKTLILQEIPEEGVKKIL  489 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~-~~~vd~~g~---------~~~~~i~d~~g~~~~~~~~  489 (670)
                      ....+||+|+|++|||||||+|+|.+..+...+.+|.+.++. ...+..++.         ...+.+||++|++.+..+ 
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-   86 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL-   86 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH-
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH-
Confidence            356799999999999999999999999887777777777666 666777654         568889999999888887 


Q ss_pred             chHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcE
Q 005908          490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPI  568 (670)
Q Consensus       490 ~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~  568 (670)
                       +..+++.+|++++|+|++++.++..+..|+..+.......  ++|+++|+||+|+.+.+ ...+.++++++.++++ ++
T Consensus        87 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~  162 (195)
T 3bc1_A           87 -TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE--NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YF  162 (195)
T ss_dssp             -HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS--SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EE
T ss_pred             -HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EE
Confidence             7889999999999999999999999999999988765433  69999999999997643 3467888899999885 99


Q ss_pred             EeecccC-ChHHHHHHHHHHHh
Q 005908          569 PVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       569 ~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ++||++| |++++|+.|.+.+.
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999 99999999998875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.91  E-value=1e-23  Score=203.37  Aligned_cols=167  Identities=17%  Similarity=0.216  Sum_probs=122.8

Q ss_pred             CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908            3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (670)
Q Consensus         3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (670)
                      +..........||+|+|++|||||||+++|++..+.. .+.++.+....  .+...++.+.+|||||++.+...+..+++
T Consensus         8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A            8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred             cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence            3445566778999999999999999999999999877 54444443322  34567899999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhc------C---CCCCEEEEEeCCCCCCCCCccchhhhhhHHH-----HHh
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL------E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQF  147 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~------~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~  147 (670)
                      .+|++|+|||++++.+++.+.. |+..+...      .   +++|+++|+||+|+......   .+....+.     +..
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~  161 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---AELVEILDLTTLMGDH  161 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---HHHHHHHTHHHHHTTS
T ss_pred             cCCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---HHHHHHhcchhhccCC
Confidence            9999999999999999999985 55555332      1   27999999999999875332   11111111     222


Q ss_pred             ccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          148 REIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       148 ~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      +  .++++|||++|.||+++|+.+.+.+..
T Consensus       162 ~--~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          162 P--FVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             C--EEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             e--eEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            2  379999999999999999999988753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.91  E-value=1.1e-23  Score=199.94  Aligned_cols=165  Identities=18%  Similarity=0.263  Sum_probs=117.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC--eEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ..+.+||+++|++|||||||+++|++..+.....++.+.  ......+. ...+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            456799999999999999999999998876664333322  22233333 346789999999999998888899999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      +|+|||++++.+++.+.. |+..+....     .++|+++|+||+|+...... ...+....++..... .++++|||++
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~~~Sa~~  161 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAKN  161 (182)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTTT
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhcCC-CeEEEEecCC
Confidence            999999999999999874 877775532     58999999999999654332 233445666664443 3799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 005908          161 MIQVPDVFYYAQKAVL  176 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (670)
                      |.||+++|+++.+.+.
T Consensus       162 ~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          162 AINVDTAFEEIARSAL  177 (182)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=203.31  Aligned_cols=165  Identities=18%  Similarity=0.292  Sum_probs=131.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+..+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d  102 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI--AKSYFRKAD  102 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHH--HHHHHHHCS
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh--HHHHHhhCC
Confidence            356799999999999999999999999887777778777777777888866678889999999888877  788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------CcccHHHHHHHHHHhCCCCcEEeec
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------YTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      ++|+|||++++.+++.+..|+..+......   +.|+++|+||+|+.+       .....+..+++++..+++ ++++||
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA  178 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHE---TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA  178 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC
Confidence            999999999999999999999888776433   589999999999962       233467788899988885 999999


Q ss_pred             ccC-ChHHHHHHHHHHHhC
Q 005908          573 KSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++| |++++|++|.+.+..
T Consensus       179 ~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          179 KDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            999 999999999998753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.91  E-value=2.6e-23  Score=198.59  Aligned_cols=161  Identities=20%  Similarity=0.328  Sum_probs=129.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .+.+||+|+|++|||||||+|+|++..+....+++.... .....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            467999999999999999999999998877755444332 2334455566789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.+++.+.. |...+...  ..++|+++|+||+|+.... +  ..+....++..++  .+++++||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~  155 (189)
T 4dsu_A           82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSRT-V--DTKQAQDLARSYG--IPFIETSAKTRQGVDD  155 (189)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSCS-S--CHHHHHHHHHHHT--CCEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCcccc-c--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence            999999999999885 77777653  3489999999999997432 2  3455677777776  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+++.+.+.
T Consensus       156 l~~~l~~~~~  165 (189)
T 4dsu_A          156 AFYTLVREIR  165 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998775

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.91  E-value=1e-23  Score=205.87  Aligned_cols=166  Identities=18%  Similarity=0.345  Sum_probs=140.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+++|.++.+...+.+|++..+. ..+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   83 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRL--RPLSYRGADI   83 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHH--HHhhccCCCE
Confidence            45799999999999999999999999888777788876654 45667766678899999999888887  7778999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc---------cHHHHHHHHHHhCCCCcEEe
Q 005908          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---------AVQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~v  570 (670)
                      +|+|||++++.+|+.+. .|+..+.....    +.|+++|+||+|+.+...         ..++++++++.++..+++++
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAP----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC  159 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence            99999999999999987 79888887653    699999999999976432         46778889999997669999


Q ss_pred             ecccC-ChHHHHHHHHHHHhCCCC
Q 005908          571 SMKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      ||++| |++++|+++.+.+..+..
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHCC--
T ss_pred             cCCCCCCHHHHHHHHHHHHhhhhh
Confidence            99999 999999999999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.91  E-value=2.2e-23  Score=194.81  Aligned_cols=163  Identities=23%  Similarity=0.405  Sum_probs=136.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|.+|||||||+|+|.+..+...+.+|++..+. ..+..++....+.+||++|++.+..+  +..+++.+|++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~   79 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEGF   79 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH--HHHHHHHCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHH--HHHHhhcCCEE
Confidence            3589999999999999999999999887777777776554 34556655668889999999888877  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.++..+..|+..+.......  +.|+++|+||+|+.+.+ ...+++.++++.++++ ++++||++| |+++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           80 LCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDK  156 (168)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCT--TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHHH
Confidence            99999999999999999999988776544  69999999999997643 3467888888888875 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|+++.+.+.+
T Consensus       157 l~~~l~~~i~~  167 (168)
T 1u8z_A          157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9e-24  Score=208.00  Aligned_cols=166  Identities=19%  Similarity=0.220  Sum_probs=128.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35679999999999999999999999988765333222 222 2333444558999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+. .|+..+... ..++|++||+||+|+...+.+ . .+....++...+  .+++++||++|.||+
T Consensus        90 ilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           90 LIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLRAV-P-TEESKTFAQENQ--LLFTETSALNSENVD  164 (223)
T ss_dssp             EEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCCC-CCCHH
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            9999999999999988 488888765 357999999999999765555 3 344566776665  379999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 005908          166 DVFYYAQKAVLHPT  179 (670)
Q Consensus       166 ~l~~~i~~~~~~~~  179 (670)
                      ++|+++.+.+....
T Consensus       165 ~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          165 KAFEELINTIYQKV  178 (223)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.90  E-value=2.9e-23  Score=198.67  Aligned_cols=165  Identities=18%  Similarity=0.317  Sum_probs=139.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh-hhhchHhhcccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASC  498 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~a  498 (670)
                      ....+||+|+|.+|||||||+|+|+++.+...+.+|++.++....+.+++....+.+||++|++.+. .+  ...+++.+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~   94 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM--VQHYYRNV   94 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT--HHHHHTTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhh--hHHHhcCC
Confidence            3467999999999999999999999999888877888888888888888666788999999998887 66  77889999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC--
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK--  575 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g--  575 (670)
                      |++|+|||++++.+++.+..|+..+.......  +.|+++|+||+|+.+.+ ...+..+++++.+++. ++++||++|  
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~  171 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLAN--DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPND  171 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGG
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCc
Confidence            99999999999999999999999998875433  69999999999997643 3467788899988875 999999996  


Q ss_pred             --ChHHHHHHHHHHHh
Q 005908          576 --DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 --~v~~l~~~l~~~~~  589 (670)
                        |++++|+.|.+.+.
T Consensus       172 ~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GSCHHHHHHHHC----
T ss_pred             ccCHHHHHHHHHHHHh
Confidence              69999999987664

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.90  E-value=1.6e-23  Score=196.34  Aligned_cols=161  Identities=16%  Similarity=0.298  Sum_probs=127.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+++|++|||||||+++|++..+.... +++..... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            4689999999999999999999998876553 33322222 333444557889999999999998899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||++++.+++.+. .|+..+.... +++|+++|+||+|+. .+.+  ..+....+++.++  .+++++||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-TRVV--TADQGEALAKELG--IPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCT-TCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCC-cCcc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHH
Confidence            99999999999887 4888886653 589999999999994 3333  3345567777776  37999999999999999


Q ss_pred             HHHHHHHHcC
Q 005908          168 FYYAQKAVLH  177 (670)
Q Consensus       168 ~~~i~~~~~~  177 (670)
                      |+.+.+.+..
T Consensus       156 ~~~l~~~~~~  165 (170)
T 1g16_A          156 FFTLAKLIQE  165 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.1e-23  Score=200.37  Aligned_cols=164  Identities=18%  Similarity=0.251  Sum_probs=133.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34579999999999999999999999988766444333322  3344555678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |+|||++++.+++.+. .|+..+....  .++|+++|+||+|+.. +.+  ..+....+++..+  .+++++||++|.||
T Consensus        92 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-REV--DRNEGLKFARKHS--MLFIEASAKTCDGV  165 (195)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-CCS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-ccc--CHHHHHHHHHHcC--CEEEEecCCCCCCH
Confidence            9999999999999988 4888887653  4799999999999953 233  2344566667665  37999999999999


Q ss_pred             hHHHHHHHHHHcCC
Q 005908          165 PDVFYYAQKAVLHP  178 (670)
Q Consensus       165 ~~l~~~i~~~~~~~  178 (670)
                      +++|+++.+.+...
T Consensus       166 ~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          166 QCAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.90  E-value=3.8e-23  Score=200.77  Aligned_cols=167  Identities=17%  Similarity=0.276  Sum_probs=141.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--GVAFYRGADC   83 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--CCGGGTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--HHHHHhCCcE
Confidence            46799999999999999999999999988887788887787788888876778999999999888887  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.++..+..|+..+....... ..+.|+++|+||+|+.+.....+....+++.....+++++||++| |++
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999998887654210 016899999999999865556777888887444446999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|++|.+.+.
T Consensus       164 ~l~~~l~~~~~  174 (207)
T 1vg8_A          164 QAFQTIARNAL  174 (207)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.90  E-value=6.4e-24  Score=204.37  Aligned_cols=170  Identities=16%  Similarity=0.104  Sum_probs=127.9

Q ss_pred             CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-----------CCCCeE--eCC-cccCCceeEEEEeC
Q 005908            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-----------VHAPTR--LPP-DFYPDRVPVTIIDT   66 (670)
Q Consensus         1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-----------~~~~~~--~~~-~~~~~~~~~~i~Dt   66 (670)
                      |+..+.......+||+|+|++|||||||++.+.+ .+...+.+           +.+...  ... .+....+.+.+|||
T Consensus         3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt   81 (198)
T 3t1o_A            3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV   81 (198)
T ss_dssp             -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred             ccccchhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence            3344455567789999999999999999976655 44333211           111111  122 44566789999999


Q ss_pred             CCCccchhhhHHHhccCCEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh
Q 005908           67 SSSLENKGKLNEELKRADAVVLTYACN------QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM  140 (670)
Q Consensus        67 ~G~~~~~~~~~~~~~~ad~ii~v~d~~------~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~  140 (670)
                      ||++.+...+..+++.+|++|+|||++      +..+++.+. .|+..++....++|+++|+||+|+.+.  +  ..+.+
T Consensus        82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~  156 (198)
T 3t1o_A           82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPDA--L--PVEMV  156 (198)
T ss_dssp             CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTTC--C--CHHHH
T ss_pred             CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhcccc--c--CHHHH
Confidence            999999999999999999999999999      556777776 377777555578999999999999764  2  23455


Q ss_pred             hHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          141 GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       141 ~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      ..++..++. .++++|||++|.||+++|+++.+.+..
T Consensus       157 ~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          157 RAVVDPEGK-FPVLEAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             HHHHCTTCC-SCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-ceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            667776663 279999999999999999999987753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.7e-23  Score=206.00  Aligned_cols=167  Identities=23%  Similarity=0.319  Sum_probs=137.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|++|||||||+|+|++..+...+.+|++.++....+.+++....+.+||++|++.+..+  +..+++.+|
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   87 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--TSAYYRGAV   87 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGTTTCC
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--HHHHhccCC
Confidence            356799999999999999999999999998888888888888788888866678899999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++|+|||++++.+|+.+..|+..+......   ++|+++|+||+|+...+ ...+++.++++..+++ ++++||++| |+
T Consensus        88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  163 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNHWLSELRENADD---NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENV  163 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECCCC-CCCH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999998876532   69999999999997643 3367788888888875 999999999 99


Q ss_pred             HHHHHHHHHHHhCCC
Q 005908          578 NNVFSRIIWAAEHPH  592 (670)
Q Consensus       578 ~~l~~~l~~~~~~~~  592 (670)
                      +++|++|.+.+....
T Consensus       164 ~~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          164 DKAFEELINTIYQKV  178 (223)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999886543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.90  E-value=2e-23  Score=199.05  Aligned_cols=163  Identities=22%  Similarity=0.259  Sum_probs=131.6

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            45679999999999999999999999987766443333222  2233444457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ . .+....++...+  .++++|||++|.||+
T Consensus        87 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           87 LLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDADREV-T-FLEASRFAQENE--LMFLETSALTGENVE  161 (186)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEecCCCCCCHH
Confidence            99999999999999874 88877654 358999999999999765554 2 234456666665  379999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+++.+.+.
T Consensus       162 ~l~~~l~~~~~  172 (186)
T 2bme_A          162 EAFVQCARKIL  172 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998775

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.90  E-value=2.7e-23  Score=196.73  Aligned_cols=160  Identities=19%  Similarity=0.259  Sum_probs=129.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+++|++|||||||+++|+++.+.. +.+|++..+ ...+..+|....+.+||++|++.       ..+++++|+
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~d~   75 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-------AKFSGWADA   75 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-------HHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-------hHHHHhCCE
Confidence            356999999999999999999999998876 557776544 46667776667888999999865       346788999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      +++|||++++.+|..+..|+..+.........++|+++|+||+|+.+   .....++++++++.++..+++++||++| |
T Consensus        76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN  155 (178)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence            99999999999999999987766655432112699999999999942   2344777888888875345999999999 9


Q ss_pred             hHHHHHHHHHHHh
Q 005908          577 LNNVFSRIIWAAE  589 (670)
Q Consensus       577 v~~l~~~l~~~~~  589 (670)
                      ++++|+.+.+.+.
T Consensus       156 i~~lf~~l~~~~~  168 (178)
T 2iwr_A          156 VDRVFQEVAQKVV  168 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998775

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.90  E-value=2.4e-23  Score=199.31  Aligned_cols=164  Identities=20%  Similarity=0.319  Sum_probs=121.3

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ...++.+||+++|++|||||||+++|+++.+.....++.... .....+....+.+.+|||||++++...+..+++.+|+
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            345678999999999999999999999988776644433322 2333444556789999999999988889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      +++|||+++..+++.+. .|...+....  .++|+++|+||+|+.. +.+  ..+....+++.++.  +++++||++|.|
T Consensus        96 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~g  169 (190)
T 3con_A           96 FLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT-RTV--DTKQAHELAKSYGI--PFIETSAKTRQG  169 (190)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCS--CHHHHHHHHHHHTC--CEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCc-ccC--CHHHHHHHHHHcCC--eEEEEeCCCCCC
Confidence            99999999999999987 4888886643  3799999999999976 222  34556677777763  799999999999


Q ss_pred             chHHHHHHHHHHc
Q 005908          164 VPDVFYYAQKAVL  176 (670)
Q Consensus       164 i~~l~~~i~~~~~  176 (670)
                      ++++|+++.+.+.
T Consensus       170 i~~l~~~l~~~~~  182 (190)
T 3con_A          170 VEDAFYTLVREIR  182 (190)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=201.03  Aligned_cols=164  Identities=19%  Similarity=0.289  Sum_probs=134.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+   ..+++.+|+
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~~   94 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAHA   94 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCSE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCCE
Confidence            45699999999999999999999999988777788887664 34556656678889999999877664   468899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeec-ccC-Ch
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSM-KSK-DL  577 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA-~~g-~v  577 (670)
                      +++|||++++.+|+.+..|+..+.........+.|+++|+||+|+...+ ...++++++++.+++. ++++|| ++| |+
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSSSCSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeecCccccH
Confidence            9999999999999999999999887642100169999999999997643 3467888999999985 999999 899 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|+.|.+.+.
T Consensus       174 ~~lf~~l~~~i~  185 (187)
T 3c5c_A          174 QHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=203.90  Aligned_cols=163  Identities=21%  Similarity=0.266  Sum_probs=124.4

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+|+|++|||||||+++|+++.+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            45679999999999999999999999887665333222 222 2333444568999999999998888899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.+ . .+....+++..+  .++++|||++|.||+
T Consensus       102 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~SA~~g~gi~  176 (200)
T 2o52_A          102 LLVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPEREV-T-FLEASRFAQENE--LMFLETSALTGENVE  176 (200)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEECTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            99999999999999874 88877654 358999999999999765554 2 234456666665  379999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+++.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (200)
T 2o52_A          177 EAFLKCARTIL  187 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998775

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.90  E-value=2.1e-23  Score=197.31  Aligned_cols=162  Identities=20%  Similarity=0.363  Sum_probs=140.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+|+|++|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+  ...+++.+|++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~~   90 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSTVA   90 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--SHHHHHTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence            4599999999999999999999999888877788887777777888866678889999999888887  78889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|+|++++.++..+..|+..+......   +.|+++|+||+|+.+.+. ..++.+.+++..+.+ ++++||++| |+++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  166 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGS---DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ  166 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence            9999999999999999999888776432   699999999999976433 367778888888875 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.|.+.+.
T Consensus       167 l~~~l~~~~~  176 (179)
T 2y8e_A          167 LFRRVAAALP  176 (179)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHh
Confidence            9999988664

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.90  E-value=5.8e-23  Score=194.83  Aligned_cols=167  Identities=18%  Similarity=0.335  Sum_probs=128.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      +..+||+|+|.+|||||||+|+|++..+...+.+|++.++....+.++ +....+.+||++|++.+..+  ...+++.+|
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   83 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--GVAFYRGAD   83 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh--hHHHhhcCC
Confidence            457999999999999999999999998887777888777877888877 44568889999999888887  778899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCc--ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELGIEPPIPVSMKSK-  575 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~vSA~~g-  575 (670)
                      ++++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+....  ...++++++++.....+++++||++| 
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            999999999999999999999888766431 01168999999999996432  33677888887555556999999999 


Q ss_pred             ChHHHHHHHHHHHh
Q 005908          576 DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 ~v~~l~~~l~~~~~  589 (670)
                      |++++|++|.+.+.
T Consensus       164 gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          164 NVDTAFEEIARSAL  177 (182)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998775

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.90  E-value=5.1e-23  Score=199.63  Aligned_cols=165  Identities=23%  Similarity=0.398  Sum_probs=140.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....++|+|+|.+|||||||+|+|.+..+...+.+|++..+. ..+..++....+.+||++|++.+..+  ...+++.+|
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~   87 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGE   87 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHH--HHHHHhhCC
Confidence            356799999999999999999999999887777777776554 45566655668889999999888877  778899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.++..+..|+..+.......  +.|+++|+||+|+.+.+ ...+++.++++.++++ ++++||++| |+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  164 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANV  164 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEeCCCCCCH
Confidence            9999999999999999999999998876544  69999999999997643 3467888899888875 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|++|.+.+..
T Consensus       165 ~~l~~~l~~~i~~  177 (206)
T 2bov_A          165 DKVFFDLMREIRA  177 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.90  E-value=7.9e-23  Score=190.43  Aligned_cols=162  Identities=19%  Similarity=0.347  Sum_probs=138.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+|+|.+..+...+.+|++..+ ...+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i   79 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHH--HHHhhccCCEEE
Confidence            48999999999999999999999988777767776544 344556655667889999999887777  677889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      +|+|++++.++..+..|+..+.......  +.|+++|+||+|+.+.....+..+++++.++++ ++++||++| |+++++
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~  156 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEECTTTCTTHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence            9999999999999999999888765443  699999999999988666678888999999985 999999999 999999


Q ss_pred             HHHHHHHhC
Q 005908          582 SRIIWAAEH  590 (670)
Q Consensus       582 ~~l~~~~~~  590 (670)
                      +++.+.+.+
T Consensus       157 ~~l~~~~~~  165 (166)
T 2ce2_X          157 YTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.90  E-value=3.8e-23  Score=198.50  Aligned_cols=164  Identities=21%  Similarity=0.339  Sum_probs=127.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCceEEEEEecCChhh-HhhhhchHhhcccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALASC  498 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-~~~~~~~~~~~~~a  498 (670)
                      ...+||+|+|++|||||||+|+|++....... .++++.++....+.++|....+.+||++|.+. +..+  ...+++.+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~--~~~~~~~~   81 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQVG   81 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT--GGGHHHHC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH--HHhhcccC
Confidence            45699999999999999999999975443222 23455556566677776666778899999866 3334  56678899


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      |++++|||++++.||+.+..|...+.......  +.|+++|+||+|+...+ ...++.+.++..+++. ++++||++| |
T Consensus        82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~SA~~g~~  158 (192)
T 2cjw_A           82 DAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQHN  158 (192)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC--CCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEeccccCCC
Confidence            99999999999999999999988887654322  69999999999997533 3356667777878765 999999999 9


Q ss_pred             hHHHHHHHHHHHh
Q 005908          577 LNNVFSRIIWAAE  589 (670)
Q Consensus       577 v~~l~~~l~~~~~  589 (670)
                      |+++|+.+.+.+.
T Consensus       159 v~~lf~~l~~~~~  171 (192)
T 2cjw_A          159 VKELFEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.90  E-value=2.7e-23  Score=200.97  Aligned_cols=165  Identities=18%  Similarity=0.343  Sum_probs=130.7

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      .....+||+|+|.+|||||||+++|++..+...+.+|++..+. ..+...|....+.+||++|++.+..+  +..+++++
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~   92 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEFDKL--RPLCYTNT   92 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTCSSS--GGGGGTTC
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHHHHH--hHhhcCCC
Confidence            3456799999999999999999999999887777778776553 44556655567889999999888887  67789999


Q ss_pred             cEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCC
Q 005908          499 DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGI  564 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~  564 (670)
                      |++++|||++++.+|..+. .|+..+.....    +.|+++|+||+|+.+.             ....++...+++.++.
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA  168 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence            9999999999999999987 78888887654    6999999999999752             2346778889999998


Q ss_pred             CCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          565 EPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       565 ~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      .+++++||++| |++++|+++.+.+..
T Consensus       169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          169 ASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            56999999999 999999999998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.90  E-value=9.4e-24  Score=207.03  Aligned_cols=171  Identities=15%  Similarity=0.233  Sum_probs=130.0

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcc--c-CCceeEEEEeCCCCccchhhhHHHhccC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--Y-PDRVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      ......+||+|+|++|||||||+|+|+++.+.....++.+.......+  . ...+.+.+|||||++.+......+++.+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            345578999999999999999999999888776544434333322222  1 2238899999999999988999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      |++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+  ..+....++...+  .++++|||++|.
T Consensus        86 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~  160 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGKN--YEYFEISAKTAH  160 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHHHHHTTTCC--CEEEEEBTTTTB
T ss_pred             CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CcEEEEecCCCC
Confidence            9999999999999999988 5888886643 35999999999999876554  3344455555554  379999999999


Q ss_pred             CchHHHHHHHHHHcCCCCCC
Q 005908          163 QVPDVFYYAQKAVLHPTAPL  182 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~~~~~  182 (670)
                      ||+++|+++.+.+.......
T Consensus       161 gv~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          161 NFGLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             TTTHHHHHHHHHHHCCTTCC
T ss_pred             CHHHHHHHHHHHHhcccccc
Confidence            99999999999987655433

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.90  E-value=6.5e-24  Score=206.21  Aligned_cols=162  Identities=15%  Similarity=0.178  Sum_probs=98.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCCCCCe--EeCCcccCC--ceeEEEEeCCCCccchhhhHHHhccC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPT--RLPPDFYPD--RVPVTIIDTSSSLENKGKLNEELKRA   83 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~~~~~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (670)
                      ...+||+|+|++|||||||+++|++.  .+.....++.+..  .....+...  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999998  6766544443311  122334444  78999999999999888888999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEeCCCCCC-CCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRG-DHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      |++|+|||++++.+++.+. .|+..+....    .++|+++|+||+|+.. .+.+  ..+....+++.++  .++++|||
T Consensus        98 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa  172 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTNT--LDFFDVSA  172 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHTT--CEEEECCC
T ss_pred             cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHcC--CEEEEecc
Confidence            9999999999999999998 5988887754    3899999999999987 5554  3345677777776  37999999


Q ss_pred             cc-CCCchHHHHHHHHHHc
Q 005908          159 TT-MIQVPDVFYYAQKAVL  176 (670)
Q Consensus       159 ~~-~~gi~~l~~~i~~~~~  176 (670)
                      ++ |.||+++|+++.+.+.
T Consensus       173 ~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          173 NPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             -------CHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            99 9999999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.90  E-value=4.6e-23  Score=196.36  Aligned_cols=164  Identities=21%  Similarity=0.352  Sum_probs=138.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|.+|||||||+++|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~   80 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVS   80 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHhccCCcEE
Confidence            4689999999999999999999998887777777776554 44556656677889999999988887  77789999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCc
Q 005908          502 IFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPP  567 (670)
Q Consensus       502 llv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~  567 (670)
                      ++|||++++.++..+. .|+..+.....    +.|+++|+||+|+.+.             ....++..++++.++..++
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCC----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            9999999999999987 68888877644    5899999999999763             2335677888888887569


Q ss_pred             EEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          568 IPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       568 ~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      +++||++| |++++|+.+.+.+..+.
T Consensus       157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          157 LECSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             EEecCCCccCHHHHHHHHHHHHhccc
Confidence            99999999 99999999999987543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.90  E-value=2.9e-23  Score=201.47  Aligned_cols=162  Identities=20%  Similarity=0.297  Sum_probs=137.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|++|||||||+|+|.+..+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~  102 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA  102 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHH--HHhhccCCCE
Confidence            45799999999999999999999999988777778776554 45667766778899999999988887  7788999999


Q ss_pred             EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  566 (670)
                      +|+|||++++.+|..+ ..|+..+.....    +.|+++|+||+|+.+.             ....++++++++.++..+
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  178 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence            9999999999999998 688888877653    6999999999999742             233677889999988656


Q ss_pred             cEEeecc-cC-ChHHHHHHHHHHHh
Q 005908          567 PIPVSMK-SK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       567 ~~~vSA~-~g-~v~~l~~~l~~~~~  589 (670)
                      ++++||+ +| |++++|+.+.+.+.
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHHh
Confidence            9999999 68 99999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.90  E-value=6.7e-24  Score=201.51  Aligned_cols=163  Identities=21%  Similarity=0.365  Sum_probs=123.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|++|||||||+++|.++.+...+.+|++..+.. .+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   82 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRL--RPLSYRGADV   82 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTT--GGGGGTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhh--HHhhccCCCE
Confidence            356999999999999999999999988877766777655432 2334445566779999999888887  7788999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-----------cHHHHHHHHHHhCCCCcE
Q 005908          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-----------AVQDSARVTQELGIEPPI  568 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~  568 (670)
                      +++|||++++.+++.+. .|+..+.....    +.|+++|+||+|+.+...           ..++..++++.++..+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAP----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI  158 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence            99999999999999987 68888877643    699999999999976432           456778899999975699


Q ss_pred             EeecccC-ChHHHHHHHHHHHhC
Q 005908          569 PVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       569 ~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++||++| |++++|+.+.+.+..
T Consensus       159 ~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          159 ECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEECCCCCCHHHHHHHHHHHHhc
Confidence            9999999 999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.90  E-value=2.8e-23  Score=203.10  Aligned_cols=164  Identities=19%  Similarity=0.318  Sum_probs=119.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+++|+++.+...+.+|+...+. ..+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~  108 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQDDYDRL--RPLFYPDASV  108 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE-EEEEETTEEEEEEEEEC-----------------CEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCchhhhHH--HHHHhccCCE
Confidence            45699999999999999999999999887777777765543 44566656668889999999988887  7788999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.+|+.+. .|+..+.....    +.|+++|+||+|+....             ...+++.++++.++..+
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  184 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA  184 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence            99999999999999986 78888877653    69999999999997642             23567788999999856


Q ss_pred             cEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ++++||++| |++++|+.|.+.+...
T Consensus       185 ~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          185 YLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999 9999999999988643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.5e-23  Score=200.65  Aligned_cols=165  Identities=19%  Similarity=0.240  Sum_probs=130.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ..+.+||+|+|++|||||||+++|+++.+.....++.+ .+..........+.+.+|||||++++...+..+++.+|+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            35679999999999999999999999887665333333 33333344555778999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|||++++.+++.+.. |+..+...   .+++|+++|+||+|+... .+  ..+....++..++  .+++++||++|.||
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  158 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-EV--DTREAQAVAQEWK--CAFMETSAKMNYNV  158 (199)
T ss_dssp             EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-SS--CHHHHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-cc--CHHHHHHHHHHhC--CeEEEEecCCCCCH
Confidence            9999999999998875 66666543   247899999999999752 22  2344566667766  37999999999999


Q ss_pred             hHHHHHHHHHHcCCC
Q 005908          165 PDVFYYAQKAVLHPT  179 (670)
Q Consensus       165 ~~l~~~i~~~~~~~~  179 (670)
                      +++|+++.+.+....
T Consensus       159 ~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          159 KELFQELLTLETRRN  173 (199)
T ss_dssp             HHHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.90  E-value=4.4e-23  Score=193.65  Aligned_cols=163  Identities=13%  Similarity=0.124  Sum_probs=123.2

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+.+||+++|++|||||||+++|+++.+....|+. +....  .+...+..+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTI-GFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCS-SEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcC-ccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            4567899999999999999999999998886654443 22222  23334789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-c-cCCeEEEeCcccCCC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQ  163 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~~~g  163 (670)
                      +|||++++.+++.... |+..+...  ..++|+++|+||+|+.+....   .+....+.... . ...++++|||++|.|
T Consensus        80 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (171)
T 1upt_A           80 YVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGTG  155 (171)
T ss_dssp             EEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCceEEEECcCCCCcC
Confidence            9999999999998885 55544332  258999999999999765322   11111111111 0 012699999999999


Q ss_pred             chHHHHHHHHHHcC
Q 005908          164 VPDVFYYAQKAVLH  177 (670)
Q Consensus       164 i~~l~~~i~~~~~~  177 (670)
                      |+++|+++.+.+..
T Consensus       156 i~~l~~~l~~~i~~  169 (171)
T 1upt_A          156 LDEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.90  E-value=7.8e-23  Score=197.85  Aligned_cols=163  Identities=20%  Similarity=0.301  Sum_probs=138.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|.+|||||||+++|.+..+...+.+|++..+.. .+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d   98 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTD   98 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHH--HHHhcCCCC
Confidence            3457999999999999999999999999888777888776653 3566755678889999999988887  777899999


Q ss_pred             EEEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCC
Q 005908          500 VTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIE  565 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~  565 (670)
                      ++++|||++++.++..+ ..|...+.....    +.|+++|+||+|+.+..             ...++..++++.++..
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  174 (201)
T 2gco_A           99 VILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF  174 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence            99999999999999988 678888777543    69999999999998642             3356778888898885


Q ss_pred             CcEEeecccC-ChHHHHHHHHHHHh
Q 005908          566 PPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       566 ~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      +++++||++| |++++|+.|.+.+.
T Consensus       175 ~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          175 GYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            6999999999 99999999998765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.90  E-value=8.6e-23  Score=195.49  Aligned_cols=163  Identities=20%  Similarity=0.347  Sum_probs=130.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|.+|||||||+|+|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~~   96 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF   96 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-------------CTTCSEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHhhCcCCEE
Confidence            4699999999999999999999999887777677765443 45556655667889999999888877  77889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ++|||++++.++..+..|+..+.......  +.|+++|+||+|+.......++++++++.++++ ++++||++| |++++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSD--DVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETSAKTRQGVEDA  173 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            99999999999999999998888765433  699999999999987556678889999999985 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      +++|.+.+..
T Consensus       174 ~~~l~~~~~~  183 (190)
T 3con_A          174 FYTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.90  E-value=3.4e-23  Score=201.08  Aligned_cols=163  Identities=20%  Similarity=0.248  Sum_probs=128.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45789999999999999999999999987766444433322  3334455668999999999999888888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      |+|||++++.+++.+. .|+..+....     .++|+++|+||+|+.. +.+  ..+....+...... .+++++||++|
T Consensus        85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~g  159 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV--ATKRAQAWCYSKNN-IPYFETSAKEA  159 (207)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCS--CHHHHHHHHHHTTS-CCEEECBTTTT
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence            9999999999999887 4877775532     4789999999999973 333  23344555553333 37999999999


Q ss_pred             CCchHHHHHHHHHHc
Q 005908          162 IQVPDVFYYAQKAVL  176 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~  176 (670)
                      .||+++|+++.+.+.
T Consensus       160 ~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          160 INVEQAFQTIARNAL  174 (207)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.90  E-value=4.3e-23  Score=192.39  Aligned_cols=157  Identities=12%  Similarity=0.122  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +||+++|++|||||||+++|+++.+....|+.. ...  ..+...++.+.+|||||++.+...+..+++++|++++|||+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~-~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   77 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-FNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS-CCE--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCc-eeE--EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999988776555433 221  13445678999999999999998899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-c-cCCeEEEeCcccCCCchHHH
Q 005908           93 NQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~~~gi~~l~  168 (670)
                      +++.+++.+.. |+..+..  ..+++|+++|+||+|+.+...   ..+....+.... . ...++++|||++|.||+++|
T Consensus        78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            99999998875 6665543  235899999999999976422   111111111111 0 11269999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      +++.+.+.
T Consensus       154 ~~l~~~i~  161 (164)
T 1r8s_A          154 DWLSNQLR  161 (164)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=6.8e-23  Score=199.91  Aligned_cols=163  Identities=16%  Similarity=0.294  Sum_probs=127.6

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ...+.+||+|+|++|||||||+++|++..+.... +++..... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            3456799999999999999999999998876553 33332222 223344445889999999999998889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+. .+.+  ..+....++..++  .++++|||++|.||
T Consensus        96 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           96 IILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-TRVV--TADQGEALAKELG--IPFIESSAKNDDNV  169 (213)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCS-SCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSS
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCc-cccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence            99999999999999887 4888887654 479999999999993 3333  3344566777776  37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       170 ~~l~~~l~~~~~  181 (213)
T 3cph_A          170 NEIFFTLAKLIQ  181 (213)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.90  E-value=2.6e-23  Score=203.71  Aligned_cols=166  Identities=12%  Similarity=0.214  Sum_probs=138.4

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC----------ceEEEEEecCChhhHhhh
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG----------NKKTLILQEIPEEGVKKI  488 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~----------~~~~~i~d~~g~~~~~~~  488 (670)
                      ..++.+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..++.          ...+.+||++|++.+..+
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            3466799999999999999999999998886665567666666666666644          567889999999998887


Q ss_pred             hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCc
Q 005908          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPP  567 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~  567 (670)
                        +..+++.+|++|+|||++++.+++.+..|+..+.......  ++|+++|+||+|+.+.+ ...++++++++.++++ +
T Consensus       101 --~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~  175 (217)
T 2f7s_A          101 --TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE--NPDIVLIGNKADLPDQREVNERQARELADKYGIP-Y  175 (217)
T ss_dssp             --HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-E
T ss_pred             --HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCCEEEEEECCccccccccCHHHHHHHHHHCCCc-E
Confidence              7889999999999999999999999999988776543222  69999999999997643 3367888899998876 9


Q ss_pred             EEeecccC-ChHHHHHHHHHHHh
Q 005908          568 IPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       568 ~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      +++||++| |++++|++|.+.+.
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999 99999999998774

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.90  E-value=5.8e-23  Score=197.19  Aligned_cols=162  Identities=22%  Similarity=0.268  Sum_probs=120.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCcc-chhhhHHHhccCCE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADA   85 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~   85 (670)
                      .+.+||+|+|++|||||||+|+|++..  +....+++...+ .....+++..+.+.+|||+|... +..+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            456999999999999999999999643  444444433332 23344555667889999999876 44566778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      +++|||++++.+|+.+.. |...+...  .+++|+++|+||+|+...+.+ .. +....++..++  .++++|||++|.|
T Consensus        84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~~-~~~~~~a~~~~--~~~~e~SA~~g~~  158 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREV-SV-SEGRAXAVVFD--XKFIETSAAVQHN  158 (192)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccc-cH-HHHHHHHHHhC--CceEEeccccCCC
Confidence            999999999999999875 77777653  347999999999999765554 33 33345555555  3799999999999


Q ss_pred             chHHHHHHHHHHc
Q 005908          164 VPDVFYYAQKAVL  176 (670)
Q Consensus       164 i~~l~~~i~~~~~  176 (670)
                      |+++|+.+.+.+.
T Consensus       159 v~~lf~~l~~~~~  171 (192)
T 2cjw_A          159 VKELFEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.90  E-value=3.1e-23  Score=200.13  Aligned_cols=158  Identities=18%  Similarity=0.253  Sum_probs=113.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+.+||+++|++|||||||+++|.++.+....|+ .+....  .+..+++.+.+|||||++.+...+..+++.+|++++
T Consensus        22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPTSE--ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC------CC-CCCSCE--EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCC-CCceeE--EEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            35678999999999999999999999887543333 222222  233345899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc---------------cCC
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------------EIE  151 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~  151 (670)
                      |||++++.+++.+.. |+..+.+.  ..++|+++|+||+|+...  + .. +.+........               ...
T Consensus        99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (198)
T 1f6b_A           99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--I-SE-ERLREMFGLYGQTTGKGSVSLKELNARPL  173 (198)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--C-CH-HHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--C-CH-HHHHHHhCcccccccccccccccccCceE
Confidence            999999999999885 66666442  358999999999999752  2 22 33333333211               123


Q ss_pred             eEEEeCcccCCCchHHHHHHHHH
Q 005908          152 TCVECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      ++++|||++|.||+++|+++.+.
T Consensus       174 ~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          174 EVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            79999999999999999998754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.90  E-value=6.9e-23  Score=195.20  Aligned_cols=164  Identities=23%  Similarity=0.400  Sum_probs=139.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   92 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEG   92 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHH--HHHHhccCCE
Confidence            35699999999999999999999999887777777776554 44556655568889999999888877  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.+++.+..|+..+.......  ++|+++|+||+|+.+.+ ...+++.++++.++++ ++++||++| |++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANVD  169 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCT--TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHH
Confidence            999999999999999999999988876544  69999999999997643 3467788889888875 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|++|.+.+..
T Consensus       170 ~l~~~l~~~i~~  181 (187)
T 2a9k_A          170 KVFFDLMREIRA  181 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.89  E-value=4.3e-23  Score=200.17  Aligned_cols=161  Identities=20%  Similarity=0.330  Sum_probs=135.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+++|.+|||||||+++|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~  104 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTDV  104 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCE
Confidence            4569999999999999999999999888777777776544 455667767778889999999998887  7789999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.+++.+. .|+..+.....    +.|+++|+||+|+....             ...++...+++.++..+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            99999999999999987 78888887653    69999999999997643             33567788899999878


Q ss_pred             cEEeecccC-ChHHHHHHHHHHH
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                      ++++||++| |++++|+++.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            999999999 9999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=9.4e-23  Score=194.76  Aligned_cols=164  Identities=12%  Similarity=0.122  Sum_probs=119.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||+++|+++.+....|+. +....  .+..+++.+.+|||||++++...+..+++.+|++|+|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-GSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-CSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCC-ccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            56899999999999999999999988876333332 22221  2223568999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCch
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP  165 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~  165 (670)
                      ||++++++++.+.. |+..+...  ..++|+++|+||+|+.+...   .++..+.+... +. ...++++|||++|.||+
T Consensus        91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            99999999999885 66666543  35899999999999975322   12221222111 11 11279999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q 005908          166 DVFYYAQKAVLHPTA  180 (670)
Q Consensus       166 ~l~~~i~~~~~~~~~  180 (670)
                      ++|+++.+.+..+..
T Consensus       167 ~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998865543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.89  E-value=4e-23  Score=197.63  Aligned_cols=162  Identities=15%  Similarity=0.191  Sum_probs=123.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .++.+||+|+|++|||||||+++|+++.+.....++.+....  .+...++.+.+|||||++++...+..+++.+|++|+
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            456799999999999999999999999887654443333332  244568899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--ccCCeEEEeCcccCCCc
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQV  164 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi  164 (670)
                      |||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   .+....+....  ....++++|||++|.||
T Consensus        97 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           97 MVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            999999999999885 55555432  258999999999999764221   11111111111  01126899999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       173 ~~l~~~l~~~~~  184 (188)
T 1zd9_A          173 DITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.89  E-value=6.1e-23  Score=196.71  Aligned_cols=158  Identities=13%  Similarity=0.212  Sum_probs=118.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+.+||+++|++|||||||+++|.++.+....++ .+....  .+..+++.+.+|||||++.+...+..+++.+|++++
T Consensus        20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPT-WHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCC-CSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHhcCCCCccccC-CCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35678999999999999999999999887654333 333332  233345899999999999998888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc----------cCCeEEEe
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----------EIETCVEC  156 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  156 (670)
                      |||++++.+++.+.. |+..+...  ..++|+++|+||+|+...  + .. +.+........          ...++++|
T Consensus        97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T 1m2o_B           97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--V-SE-AELRSALGLLNTTGSQRIEGQRPVEVFMC  171 (190)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--C-CH-HHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred             EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--C-CH-HHHHHHhCCccccccccccccceEEEEEe
Confidence            999999999999885 66666432  358999999999999762  2 22 22222222110          11369999


Q ss_pred             CcccCCCchHHHHHHHHH
Q 005908          157 SATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~  174 (670)
                      ||++|.||+++|+++.+.
T Consensus       172 Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          172 SVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             BTTTTBSHHHHHHHHHTT
T ss_pred             ECCcCCCHHHHHHHHHhh
Confidence            999999999999988753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.89  E-value=1.8e-23  Score=198.74  Aligned_cols=165  Identities=12%  Similarity=0.120  Sum_probs=116.6

Q ss_pred             CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908            3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (670)
Q Consensus         3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (670)
                      ........+.+||+++|++|||||||+++|+++.+....++ .+....  .+..+++.+.+|||||++++...+..+++.
T Consensus        12 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   88 (181)
T 2h17_A           12 SGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTN   88 (181)
T ss_dssp             ---------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECC-SSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTT
T ss_pred             CCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCc-CceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence            34445566789999999999999999999999887332333 222222  222356899999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCc
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSA  158 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA  158 (670)
                      +|++|+|||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   .+..+.+... .. ...++++|||
T Consensus        89 ~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa  164 (181)
T 2h17_A           89 TEFVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCA  164 (181)
T ss_dssp             CCEEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBT
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCCCH---HHHHHHhCcccccCCceEEEEccC
Confidence            999999999999999999885 55555432  358999999999999764221   1111111111 01 1126999999


Q ss_pred             ccCCCchHHHHHHHHH
Q 005908          159 TTMIQVPDVFYYAQKA  174 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~  174 (670)
                      ++|.||+++|+++.+.
T Consensus       165 ~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          165 LTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTTBTHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHhh
Confidence            9999999999988753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.89  E-value=5.1e-23  Score=201.74  Aligned_cols=169  Identities=17%  Similarity=0.202  Sum_probs=138.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-eEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~-~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ...+||+|+|.+|||||||+|+|+++.+...+.+|.+.......+...++. ..+.+||++|++.+..+  ...+++.+|
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   86 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--KDVYYIGAS   86 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--CHHHHTTCS
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--HHHHhhcCC
Confidence            457999999999999999999999988876666776655554444444333 77889999999888877  778899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++|+|||++++.+++.+..|+..+......   +.|+++|+||+|+.+. ....+....+++..++. ++++||++| |+
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv  162 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGN---EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISAKTAHNF  162 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---SSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBTTTTBTT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEecCCCCCH
Confidence            999999999999999999999998877543   5899999999999875 33466677777777765 999999999 99


Q ss_pred             HHHHHHHHHHHhCCCCCC
Q 005908          578 NNVFSRIIWAAEHPHLNI  595 (670)
Q Consensus       578 ~~l~~~l~~~~~~~~~~~  595 (670)
                      +++|++|.+.+.......
T Consensus       163 ~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          163 GLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             THHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHhcccccc
Confidence            999999999997765554

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1e-22  Score=197.97  Aligned_cols=166  Identities=21%  Similarity=0.326  Sum_probs=133.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+|+|.++.+...+.+|++..+... +..++....+.+||++|++.+..+  +..+++.+|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   99 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDV   99 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTT--GGGGCTTCCE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHH--HHhhcCCCCE
Confidence            3468999999999999999999999998877777777666543 566655678889999999888877  7788999999


Q ss_pred             EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.++..+ ..|+..+.....    +.|+++|+||+|+.+..             ...++...+++.++..+
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  175 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYD  175 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCE
Confidence            9999999999999988 678888877543    69999999999997641             23567778888888856


Q ss_pred             cEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      ++++||++| |++++|++|.+.+..+..
T Consensus       176 ~~~~SA~~g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          176 YLECSAKTKEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999 999999999999876543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.89  E-value=2e-23  Score=204.45  Aligned_cols=163  Identities=15%  Similarity=0.211  Sum_probs=129.5

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCC----------ceeEEEEeCCCCccchhhh
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPD----------RVPVTIIDTSSSLENKGKL   76 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~i~Dt~G~~~~~~~~   76 (670)
                      ..+.+||+|+|++|||||||+++|++..+.....++.+...  ....+...          .+.+.||||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            45679999999999999999999999887554322222111  22333333          6889999999999988889


Q ss_pred             HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV  154 (670)
Q Consensus        77 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (670)
                      ..+++.+|++|+|||++++.+++.+. .|+..+....  .++|+++|+||+|+...+.+  ..+....+++.++  .+++
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~  176 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYG--IPYF  176 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEE
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccccccc--CHHHHHHHHHHCC--CcEE
Confidence            99999999999999999999999887 4887776543  58999999999999765554  3345667777776  3799


Q ss_pred             EeCcccCCCchHHHHHHHHHHc
Q 005908          155 ECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      +|||++|.||+++|+++.+.+.
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1e-22  Score=196.32  Aligned_cols=169  Identities=17%  Similarity=0.323  Sum_probs=139.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...++|+|+|.+|||||||+|+|+++.+...+.+|.+..+. ..+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   82 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAM--QRLSISKGHA   82 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHH--HHHHHHHCSE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHH--HHHhhccCCE
Confidence            45699999999999999999999998887766677665443 44555655668889999999888877  7788899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      +++|||++++.+++.+..|+..+....... .+.|+++|+||+|+.+.....+....+++.+++. ++++||++| |+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSV-EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETSAKMNYNVKE  160 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCG-GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Confidence            999999999999998888887776653210 1589999999999987666677888889988875 999999999 9999


Q ss_pred             HHHHHHHHHhCCCCC
Q 005908          580 VFSRIIWAAEHPHLN  594 (670)
Q Consensus       580 l~~~l~~~~~~~~~~  594 (670)
                      +|++|.+.+..+..+
T Consensus       161 l~~~l~~~~~~~~~~  175 (199)
T 2gf0_A          161 LFQELLTLETRRNMS  175 (199)
T ss_dssp             HHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHHhhhhcc
Confidence            999999988765543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.89  E-value=4.4e-23  Score=200.31  Aligned_cols=166  Identities=21%  Similarity=0.251  Sum_probs=106.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcCCC--ceEEEEEecCChhhHhhhhchHhhcc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQPGG--NKKTLILQEIPEEGVKKILSNKEALA  496 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~t~~~~~~~~~vd~~g~--~~~~~i~d~~g~~~~~~~~~~~~~~~  496 (670)
                      ...+||+|+|.+|||||||+|+|++.  .+...+.+|++.++....+.+++.  ...+.+||++|++.+..+  +..+++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~   95 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ--ISQYWN   95 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH--HSTTCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH--HHHHHh
Confidence            45699999999999999999999998  666666678776677777888865  678899999999988887  788899


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-C-cccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-Y-TMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      .+|++|+|||++++.+|+.+..|+..+.........+.|+++|+||+|+.+ . ....++++++++.++++ ++++||++
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~  174 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANP  174 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--
T ss_pred             hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCC
Confidence            999999999999999999999999999887541011699999999999986 3 33467888999999875 99999999


Q ss_pred             -C-ChHHHHHHHHHHHh
Q 005908          575 -K-DLNNVFSRIIWAAE  589 (670)
Q Consensus       575 -g-~v~~l~~~l~~~~~  589 (670)
                       | |++++|++|.+.+.
T Consensus       175 ~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          175 PGKDADAPFLSIATTFY  191 (208)
T ss_dssp             -----CHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence             9 99999999999775

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.89  E-value=7.1e-23  Score=196.16  Aligned_cols=163  Identities=14%  Similarity=0.205  Sum_probs=120.7

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (670)
                      ....+.+||+|+|++|||||||+++|++.. +.....++.+....  .+..+++.+.+|||||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE--EEECSSCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            345678999999999999999999999887 45444444443322  233446899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-C---CCCCEEEEEeCCCCCCCCCccchhhhhhHHH--HHhc-cCCeEEEeCc
Q 005908           86 VVLTYACNQQSTLSRLSSYWLPELRRL-E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR-EIETCVECSA  158 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~~~~~~l~~~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~SA  158 (670)
                      +|+|||++++.+++.+.. |+..+... .   .++|+++|+||+|+.+...   . +.+....  ..+. ...++++|||
T Consensus        94 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDAVT---S-VKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC---H-HHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccCCC---H-HHHHHHhChhhccCCceEEEEccC
Confidence            999999999999999885 55555443 2   4899999999999975422   2 2222222  1211 1137999999


Q ss_pred             ccCCCchHHHHHHHHHHc
Q 005908          159 TTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~  176 (670)
                      ++|.||+++|+++.+.+.
T Consensus       169 ~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            999999999999988653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.89  E-value=9.7e-23  Score=194.40  Aligned_cols=161  Identities=12%  Similarity=0.143  Sum_probs=121.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||+++|+++. .....++.+.....  +..+++.+.+|||||++++...+..+++.+|++++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   92 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEE--EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEE--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            578999999999999999999999888 33333333333222  223578999999999999888899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-h-ccCCeEEEeCcccCCCch
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVP  165 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~SA~~~~gi~  165 (670)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+.+....   ++..+.+... . ....++++|||++|.||+
T Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            99999999999885 55555432  358999999999999765322   1111111111 0 111379999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      ++|+++.+.+..
T Consensus       169 ~l~~~l~~~i~~  180 (186)
T 1ksh_A          169 PGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.89  E-value=4.5e-23  Score=195.98  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=118.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+.+||+++|++|||||||+++|.+..+....| +.+.....  +..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~-t~g~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   90 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKS--VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ETTEEEEE--EEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccC-cCCeEEEE--EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            567999999999999999999999886533222 22322222  223478999999999999988899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--ccCCeEEEeCcccCCCch
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP  165 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~  165 (670)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+.+....   ++....+....  ....++++|||++|.||+
T Consensus        91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            99999999999875 65555322  258999999999999765322   11111111110  011269999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+++.+.+.
T Consensus       167 ~l~~~l~~~~~  177 (181)
T 1fzq_A          167 DGMNWVCKNVN  177 (181)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=9e-23  Score=191.48  Aligned_cols=166  Identities=19%  Similarity=0.332  Sum_probs=134.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+++|.+|||||||+|+|+++.+...+.+|.+..+. ..+...+....+.+||++|++.+..+  ...+++.+|++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~   78 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM--QRLSISKGHAF   78 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH--HHHHHHHCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHhcccCCEE
Confidence            3589999999999999999999998887666666665443 34455545567889999999888777  77888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|+|++++.+++.+..|+..+....... .+.|+++|+||+|+.+.+. ...+.+.+++..+++ ++++||++| |+++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           79 ILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKE  156 (172)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEecCCCCcCHHH
Confidence            99999999999998888888887654211 1689999999999976433 356778888888875 999999999 9999


Q ss_pred             HHHHHHHHHhCCC
Q 005908          580 VFSRIIWAAEHPH  592 (670)
Q Consensus       580 l~~~l~~~~~~~~  592 (670)
                      +|++|.+.+..++
T Consensus       157 l~~~l~~~~~~~~  169 (172)
T 2erx_A          157 LFQELLNLEKRRT  169 (172)
T ss_dssp             HHHHHHHTCCSSC
T ss_pred             HHHHHHHHHhhhh
Confidence            9999998776543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.89  E-value=6.8e-23  Score=201.37  Aligned_cols=164  Identities=18%  Similarity=0.277  Sum_probs=140.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|.+|||||||+|+|+.+.+...+.+|.+.++....+...+....+.+||++|++.+..+  ...+++.+|
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~   89 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--RDGYYIQAQ   89 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--CHHHHTTCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--HHHHHhcCC
Confidence            456799999999999999999998877766666677776677777777766778899999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      ++++|||++++.++..+..|+..+.....    ++|+++|+||+|+.+.... .....+++..++. ++++||++| |++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQ-YYDISAKSNYNFE  163 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHST----TCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCE-EEECBGGGTBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCcccccccc-HHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999999988754    6999999999999875443 3566678888876 999999999 999


Q ss_pred             HHHHHHHHHHhCC
Q 005908          579 NVFSRIIWAAEHP  591 (670)
Q Consensus       579 ~l~~~l~~~~~~~  591 (670)
                      ++|++|.+.+...
T Consensus       164 ~l~~~l~~~l~~~  176 (221)
T 3gj0_A          164 KPFLWLARKLIGD  176 (221)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999987544

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.89  E-value=6.3e-23  Score=197.00  Aligned_cols=161  Identities=11%  Similarity=0.124  Sum_probs=116.8

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .++.+||+|+|++|||||||+++|+++.+....|+.. ...  ..+...++.+.+|||||++.+...+..+++.+|++|+
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~-~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-FNV--ETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT-EEE--EEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc-eeE--EEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4578999999999999999999999888765434322 211  2334467899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEEeCcccCCCc
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVECSATTMIQV  164 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~~~gi  164 (670)
                      |||++++.+++.+.. |+..+...  ..++|+++|+||+|+.+....   .+....+.....  ...++++|||++|.||
T Consensus       103 v~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          103 VVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            999999999999875 66655432  248999999999999764221   111111111110  1126899999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (192)
T 2b6h_A          179 YDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.89  E-value=1.8e-24  Score=208.96  Aligned_cols=165  Identities=25%  Similarity=0.403  Sum_probs=132.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ..+.+||+|+|.+|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d  107 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH  107 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--SCC--CCCS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhhcCC
Confidence            456799999999999999999999998887776677777788888888866678899999999888877  778899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+.. .+..+.+++.++++ ++++||++| |+
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~gv  183 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNV  183 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC-C---CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCCC---HHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhccC---CCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            999999999999999999999998766543   5999999999999865433 45677888888876 999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 005908          578 NNVFSRIIWAAEH  590 (670)
Q Consensus       578 ~~l~~~l~~~~~~  590 (670)
                      +++|++|.+.+..
T Consensus       184 ~~l~~~l~~~l~~  196 (199)
T 3l0i_B          184 EQSFMTMAAEIKK  196 (199)
T ss_dssp             HHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.88  E-value=8.2e-23  Score=196.84  Aligned_cols=167  Identities=13%  Similarity=0.133  Sum_probs=115.1

Q ss_pred             CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCccc-CCceeEEEEeCCCCccchhhh---HHH
Q 005908            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFY-PDRVPVTIIDTSSSLENKGKL---NEE   79 (670)
Q Consensus         5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~---~~~   79 (670)
                      ......+.+||+++|++|||||||++++.+........+...... ....+. ...+.+.+|||+|++.+....   ..+
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            344566789999999999999999998887532221111111111 111122 556899999999999987776   899


Q ss_pred             hccCCEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc-----cchhhhhhHHHH----Hhc
Q 005908           80 LKRADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQ----QFR  148 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~~~~~~~----~~~  148 (670)
                      ++++|++|+|||++++  +++..+. .|+..+....+++|++||+||+|+.+....     ....+....+++    ..+
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            9999999999999997  6666665 366666555679999999999998753110     012223344555    333


Q ss_pred             cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          149 EIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       149 ~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                        .++++|||++ .||+++|+.+++.+
T Consensus       172 --~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 --LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             --EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             --cceEEEEech-hhHHHHHHHHHHHh
Confidence              3799999999 99999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.88  E-value=3e-22  Score=195.69  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=117.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCccchh-hhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKG-KLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~i   86 (670)
                      ..+.+||+++|++|||||||+++|+++.+....+++..... ...+... ++.+.+|||||++.+.. .+..+++.+|++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            35679999999999999999999999998877665443332 2334333 68899999999998887 788899999999


Q ss_pred             EEEEECCChh-hHHHHHHHHHHHHHh---cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--------------
Q 005908           87 VLTYACNQQS-TLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--------------  148 (670)
Q Consensus        87 i~v~d~~~~~-s~~~~~~~~~~~l~~---~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------------  148 (670)
                      |+|||+++.. ++....+.|...+..   ...++|+++|+||+|+......   ......+...++              
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHHHHHhccchhcccccc
Confidence            9999999854 466666667766654   2347999999999999865432   111111111111              


Q ss_pred             ----------------------cCCeEEEeCcccC------CCchHHHHHHHHH
Q 005908          149 ----------------------EIETCVECSATTM------IQVPDVFYYAQKA  174 (670)
Q Consensus       149 ----------------------~~~~~~~~SA~~~------~gi~~l~~~i~~~  174 (670)
                                            ...+|++|||++|      .||+++|+++.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                  0236999999999      9999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.88  E-value=4.4e-22  Score=190.35  Aligned_cols=160  Identities=17%  Similarity=0.267  Sum_probs=126.2

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      ..+..+||+|+|.+|||||||+|+|+++.+...+.+|++..+.  .+..  ....+.+||++|++.+..+  +..+++.+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~   91 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSM--WERYCRGV   91 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTT--HHHHHTTC
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHH--HHHHHccC
Confidence            3456799999999999999999999999887666677765543  2332  4678889999999998887  78889999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEee
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVS  571 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vS  571 (670)
                      |++++|+|++++.++..+..|+..+.......  +.|+++|+||+|+......    +++.+.++.       .+++++|
T Consensus        92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S  165 (188)
T 1zd9_A           92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLPGALDE----KELIEKMNLSAIQDREICCYSIS  165 (188)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccC--CCCEEEEEECCCCccCCCH----HHHHHHhChhhhccCCeeEEEEE
Confidence            99999999999999999999988886643222  6999999999999864221    223333221       1489999


Q ss_pred             cccC-ChHHHHHHHHHHHhC
Q 005908          572 MKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~~~~  590 (670)
                      |++| |++++|++|.+.+..
T Consensus       166 A~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          166 CKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TTTCTTHHHHHHHHHHTCC-
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            9999 999999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=3e-22  Score=192.83  Aligned_cols=162  Identities=20%  Similarity=0.289  Sum_probs=136.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++. ..+  ...+++.+|+
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~--~~~~~~~~d~  101 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQ--REGHMRWGEG  101 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHH--HHHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccc--hhhhhccCCE
Confidence            45699999999999999999999999988887788776553 4455665667888999999876 445  6788899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC--Ch
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK--DL  577 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g--~v  577 (670)
                      +++|||++++.+++.+..|+..+.......  ++|+++|+||+|+.+. ....+++.++++.++++ ++++||++|  |+
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~~gi  178 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNI  178 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCC--CCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECCCcCCcCH
Confidence            999999999999999999998888765433  6999999999999764 33467888899888875 999999998  79


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|++|.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (196)
T 2atv_A          179 TEIFYELCREVR  190 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.80  E-value=1.8e-24  Score=209.87  Aligned_cols=166  Identities=23%  Similarity=0.331  Sum_probs=130.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ..+.+||+++|++|||||||+++|+++.+.....++. ........+....+.+.+|||||++++...+..+++.+|++|
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            3567999999999999999999999888766633332 222233445556778889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      +|||++++.+++.+...|+..++...+++|+++|+||+|+......          ....+....+++.++. .++++||
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS  185 (204)
Confidence            9999999999999875698888877678999999999999764311          0122334455555542 2689999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 005908          158 ATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~  175 (670)
                      |++|.||+++|+.+.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=3.4e-22  Score=190.87  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=121.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+|+|.+|||||||+|+|+++.+. .+.+|.+...  ..+...  ...+.+||++|++++..+  +..+++.+|+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   86 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTEF   86 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGG--GHHHHTTCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence            45699999999999999999999988876 4446665332  334444  377889999999888887  7888999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH-----hCCCCcEEeecccC
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKSK  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSA~~g  575 (670)
                      +++|+|++++.+|+....|+..+.......  +.|+++|+||+|+.+.. ..+++.+....     .++ +++++||++|
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g  162 (187)
T 1zj6_A           87 VIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW-HIQACCALTG  162 (187)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCE-EEEECBTTTT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhchhhC--CCeEEEEEECCCCcCCC-CHHHHHHHhChhhhcCCCc-EEEEccCCCC
Confidence            999999999999999999998887653222  69999999999997632 23333332221     222 5899999999


Q ss_pred             -ChHHHHHHHHHHHhCCCCC
Q 005908          576 -DLNNVFSRIIWAAEHPHLN  594 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~~~~  594 (670)
                       |++++|++|.+.+..+...
T Consensus       163 ~gi~~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          163 EGLCQGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             BTHHHHHHHHHHHHCC----
T ss_pred             cCHHHHHHHHHHHHHHHhhh
Confidence             9999999999998655443

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.88  E-value=9.9e-22  Score=184.34  Aligned_cols=161  Identities=18%  Similarity=0.194  Sum_probs=124.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+..+||+|+|++|||||||+|+|.++.+.. +.+|.+  .....+...  ...+.+||++|++.+..+  +..+++.+|
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d   76 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPY--WRCYYSNTD   76 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGG--GGGGCTTCS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHH--HHHHhccCC
Confidence            3457999999999999999999999988753 345554  334445444  467889999999888887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH----HHhCCCCcEEeecccC
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK  575 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g  575 (670)
                      ++++|+|++++.+|.....|+..+.......  +.|+++|+||+|+.+.....+..+.+.    +..++ +++++||++|
T Consensus        77 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  153 (171)
T 1upt_A           77 AVIYVVDSCDRDRIGISKSELVAMLEEEELR--KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKG  153 (171)
T ss_dssp             EEEEEEETTCCTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhchhhC--CCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce-EEEECcCCCC
Confidence            9999999999999999998888876543222  699999999999987432222222221    11233 5899999999


Q ss_pred             -ChHHHHHHHHHHHhC
Q 005908          576 -DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~  590 (670)
                       |++++|+++.+.+..
T Consensus       154 ~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          154 TGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhh
Confidence             999999999998864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.88  E-value=4.9e-22  Score=191.54  Aligned_cols=165  Identities=19%  Similarity=0.215  Sum_probs=125.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (670)
                      ..+.+||+|+|.+|||||||+|+|++..+.. .+.+|++  +....++  +....+.+||++|++.+..+  +..+++.+
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~   87 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFE--KGRVAFTVFDMGGAKKFRGL--WETYYDNI   87 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEE--ETTEEEEEEEECCSGGGGGG--GGGGCTTC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEE--eCCEEEEEEECCCCHhHHHH--HHHHHhcC
Confidence            4567999999999999999999999999888 5667766  3334444  35678889999999998887  78899999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCC-----CCCCCcEEEEEeCCCCCCCcccHHHHHHHH-----HHhCCCCcE
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGED-----SGYGVPCLLIASKDDLKPYTMAVQDSARVT-----QELGIEPPI  568 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~-----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~  568 (670)
                      |++|+|||++++.+|..+..|+..+......     ...++|+++|+||+|+.......+..+.+.     +..++ +++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~  166 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF-VIF  166 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE-EEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee-EEE
Confidence            9999999999999999999998888654210     001589999999999987533222222221     22344 589


Q ss_pred             EeecccC-ChHHHHHHHHHHHhCC
Q 005908          569 PVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       569 ~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ++||++| |++++|++|.+.+...
T Consensus       167 ~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          167 ASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EeeCCCccCHHHHHHHHHHHHHHH
Confidence            9999999 9999999999988643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.88  E-value=5.1e-24  Score=205.83  Aligned_cols=163  Identities=18%  Similarity=0.279  Sum_probs=122.6

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ..+.+||+|+|++|||||||+|+|++..+... .+++..... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            35579999999999999999999999887665 232222222 3334445568899999999999988899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++..++  .+++++||++|.||+
T Consensus       110 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~vSA~~g~gv~  184 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVE  184 (199)
T ss_dssp             EECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC--CCC--CSCC-CHHHHTTT--CCBCCCCC---HHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCccccC--CHHHHHHHHHHcC--CeEEEEECCCCCCHH
Confidence            99999999999999984 888887654 47999999999999876655  2344567777776  379999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+++.+.+.
T Consensus       185 ~l~~~l~~~l~  195 (199)
T 3l0i_B          185 QSFMTMAAEIK  195 (199)
T ss_dssp             HHHHHHTTTTT
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.87  E-value=1.3e-21  Score=186.48  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=124.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+++|++|||||||+|+|+++. ...+.+|++  .....+..+  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~   88 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHR--GFKLNIWDVGGQKSLRSY--WRNYFESTDG   88 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEET--TEEEEEEEECCSHHHHTT--GGGGCTTCSE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence            456999999999999999999999988 444556665  334445544  467889999999998887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH-----HhCCCCcEEeecccC
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMKSK  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSA~~g  575 (670)
                      +++|+|++++.+++.+..|+..+.......  +.|+++|+||+|+.+.... ++..+...     ..++ +++++||++|
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  164 (186)
T 1ksh_A           89 LIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGALSC-NAIQEALELDSIRSHHW-RIQGCSAVTG  164 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCH-HHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhChhcC--CCcEEEEEeCccCCCCCCH-HHHHHHhChhhccCCce-EEEEeeCCCC
Confidence            999999999999999999988887653222  6999999999999874322 22222111     1122 5899999999


Q ss_pred             -ChHHHHHHHHHHHhCC
Q 005908          576 -DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~  591 (670)
                       |++++|+++.+.+.+.
T Consensus       165 ~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          165 EDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence             9999999999988653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.87  E-value=1.9e-22  Score=193.00  Aligned_cols=161  Identities=16%  Similarity=0.116  Sum_probs=121.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||+++|+++.+....|+.. ....  .+...++.+.+|||||++++...+..+++.+|++|+|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLE--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT-CCEE--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc-eEEE--EEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            578999999999999999999999888765444432 2222  2333478999999999999888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-c-cCCeEEEeCcccCCCch
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVP  165 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~~~gi~  165 (670)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+.+....   .+....+.... . ...++++|||++|.||+
T Consensus        97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999998885 55554332  258999999999999764321   11111111111 0 01269999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      ++|+++.+.+..
T Consensus       173 ~l~~~l~~~i~~  184 (189)
T 2x77_A          173 EGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.87  E-value=4.1e-22  Score=208.43  Aligned_cols=166  Identities=25%  Similarity=0.334  Sum_probs=135.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ...+||+++|++|||||||+++|+++.+.....++..... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            4568999999999999999999999888766544433322 333445556778899999999999899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      |||++++.+++.+...|...++...+++|+++|+||+|+...            +.+  ..+....+++.++. .++++|
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~  309 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLEC  309 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccc--cHHHHHHHHHHcCC-cEEEEe
Confidence            999999999999876799999887779999999999998653            222  23445667777653 379999


Q ss_pred             CcccCCCchHHHHHHHHHHcCC
Q 005908          157 SATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      ||++|.||+++|+.+.+.++.+
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999988754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=187.91  Aligned_cols=162  Identities=17%  Similarity=0.185  Sum_probs=125.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERP-FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ...+||+|+|.+|||||||+|+|++.. +...+.+|++  +....+..++  ..+.+||++|++.+..+  +..+++.+|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~d   92 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNL--WEHYYKEGQ   92 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGG--GGGGGGGCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcCC
Confidence            456999999999999999999999987 4444445554  5556666663  67889999999888887  778999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH--H---hCCCCcEEeeccc
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ--E---LGIEPPIPVSMKS  574 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~---~~~~~~~~vSA~~  574 (670)
                      ++++|+|++++.++..+..|+..+.........+.|+++|+||+|+.+.. ..+++.+...  .   .++ +++++||++
T Consensus        93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  170 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-TSVKVSQLLCLENIKDKPW-HICASDAIK  170 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCE-EEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-CHHHHHHHhChhhccCCce-EEEEccCCC
Confidence            99999999999999999999988877543200169999999999997632 3344444442  1   122 589999999


Q ss_pred             C-ChHHHHHHHHHHHhC
Q 005908          575 K-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~  590 (670)
                      | |++++|++|.+.+..
T Consensus       171 ~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TBTHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            9 999999999988754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.87  E-value=7.2e-22  Score=190.56  Aligned_cols=157  Identities=17%  Similarity=0.179  Sum_probs=117.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+++|++|||||||+++|.++.+.. +.+|.+...  ..+..+|  ..+.+||++|++.+..+  +..+++.+|+
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~--~~~~~~~~d~   95 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRV--WKNYLPAING   95 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCG--GGGGGGGCSE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHH--HHHHHhcCCE
Confidence            456899999999999999999999988753 345655443  3455553  78889999999988887  7789999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC----------------C
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG----------------I  564 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~  564 (670)
                      +++|+|++++.+|.....|+..+.+.....  ++|+++|+||+|+.+ ....+++.+++....                .
T Consensus        96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1f6b_A           96 IVFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARP  172 (198)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCce
Confidence            999999999999999999998887653222  699999999999976 334555555544221                1


Q ss_pred             CCcEEeecccC-ChHHHHHHHHHH
Q 005908          565 EPPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       565 ~~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      .+++++||++| |++++|++|.+.
T Consensus       173 ~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          173 LEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHh
Confidence            25899999999 999999999764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.87  E-value=1.1e-21  Score=182.76  Aligned_cols=153  Identities=22%  Similarity=0.246  Sum_probs=119.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+|+|+++.+.. +.||.+  +....+..  ....+.+||++|++.+..+  +..+++++|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   73 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF   73 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEEC--SSCEEEEEECCCCGGGHHH--HHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEE--CCEEEEEEEcCCChhhHHH--HHHHhccCCEEEE
Confidence            589999999999999999999888764 345655  33344544  3467889999999988887  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecccC-
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK-  575 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~~g-  575 (670)
                      |+|++++.+|.....|+..+.......  +.|+++|+||+|+.+...    .+++.+..+.       .+++++||++| 
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  147 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGD  147 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhc--CCeEEEEEECcCCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCc
Confidence            999999999999999988876543222  699999999999976422    2223333321       14899999999 


Q ss_pred             ChHHHHHHHHHHHh
Q 005908          576 DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 ~v~~l~~~l~~~~~  589 (670)
                      |++++|++|.+.+.
T Consensus       148 gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          148 GLYEGLDWLSNQLR  161 (164)
T ss_dssp             THHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.87  E-value=1.7e-22  Score=194.45  Aligned_cols=162  Identities=18%  Similarity=0.155  Sum_probs=124.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------CCcccceEEEEE-EcCCCceEEEEEecCChhhHhhh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----------PTTGEQYAVNVV-DQPGGNKKTLILQEIPEEGVKKI  488 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----------~t~~~~~~~~~v-d~~g~~~~~~i~d~~g~~~~~~~  488 (670)
                      ...+||+|+|.+|||||||++.+.+.. ...+.           +|.+.++....+ ...+....+.+||++|++.+..+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            457999999999999999997776643 33322           222222222222 44455668889999999888887


Q ss_pred             hchHhhcccccEEEEEEECC------CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh
Q 005908          489 LSNKEALASCDVTIFVYDSS------DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL  562 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~  562 (670)
                        +..+++.+|++|+|||++      +..+|..+..|+..+....    .+.|+++|+||+|+.+. ...++++++++.+
T Consensus        91 --~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~----~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~  163 (198)
T 3t1o_A           91 --RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL----DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPE  163 (198)
T ss_dssp             --HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCT----TSSCEEEEEECTTSTTC-CCHHHHHHHHCTT
T ss_pred             --HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcccc----CCCCEEEEEEchhcccc-cCHHHHHHHHHhc
Confidence              788999999999999999      4566777777777663221    27999999999999773 5577888899888


Q ss_pred             CCCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          563 GIEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       563 ~~~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++.+++++||++| |++++|++|.+.+..
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            8845999999999 999999999998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.87  E-value=1e-21  Score=188.21  Aligned_cols=157  Identities=15%  Similarity=0.161  Sum_probs=121.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+++|++|||||||+++|.++.+.. +.+|.+..  ...+..+|  ..+.+||++|++.+..+  +..+++.+|+
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   93 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRL--WKDYFPEVNG   93 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTS--GGGGCTTCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcCCE
Confidence            345799999999999999999999988754 34555543  34555553  78889999999988887  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh-----------CCCCcEE
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-----------GIEPPIP  569 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~  569 (670)
                      +++|+|++++.+|+....|+..+.......  +.|+++|+||+|+.+ ....+++.+.....           ...++++
T Consensus        94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T 1m2o_B           94 IVFLVDAADPERFDEARVELDALFNIAELK--DVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFM  170 (190)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHcchhhc--CCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEE
Confidence            999999999999999999998887643322  699999999999986 33344444433221           1125899


Q ss_pred             eecccC-ChHHHHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~  587 (670)
                      +||++| |++++|++|.+.
T Consensus       171 ~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          171 CSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CBTTTTBSHHHHHHHHHTT
T ss_pred             eECCcCCCHHHHHHHHHhh
Confidence            999999 999999998753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.87  E-value=5.4e-22  Score=185.51  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=111.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHhc--
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--   81 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--   81 (670)
                      +.++|+++|++|||||||+++|++..+... .|++.... ....+...+..+.+|||||++.+.      .....+++  
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK-KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCC-CEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceee-eEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            468999999999999999999998775333 44322111 111223346789999999998764      33355664  


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      ++|++++|+|+++.+..   . .|+..+.+.  ++|+++|+||+|+...+.+ .  ...+.+++.++  .+++++||++|
T Consensus        81 ~~~~~i~v~D~~~~~~~---~-~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~SA~~~  149 (165)
T 2wji_A           81 KPDLVVNIVDATALERN---L-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSAAKK  149 (165)
T ss_dssp             CCSEEEEEEETTCHHHH---H-HHHHHHHHT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBGGGT
T ss_pred             CCCEEEEEecCCchhHh---H-HHHHHHHhc--CCCEEEEEEchHhccccCh-h--hHHHHHHHHhC--CCEEEEEcCCC
Confidence            89999999999875433   2 377777664  7999999999998654443 2  23466777776  37999999999


Q ss_pred             CCchHHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKAV  175 (670)
Q Consensus       162 ~gi~~l~~~i~~~~  175 (670)
                      .||+++|+.+.+.+
T Consensus       150 ~~v~~l~~~l~~~~  163 (165)
T 2wji_A          150 MGIEELKKAISIAV  163 (165)
T ss_dssp             BSHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=2.1e-22  Score=191.32  Aligned_cols=159  Identities=14%  Similarity=0.139  Sum_probs=116.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++.+||+++|++|||||||+++|+++.+....++ .+.....  +..++..+.+|||||++.+...+..+++.+|++++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNVET--LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   92 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS-TTCCEEE--EEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCc-CccceEE--EEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            6789999999999999999999998877332333 2222222  223468999999999999888899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--c-cCCeEEEeCcccCCCc
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--R-EIETCVECSATTMIQV  164 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~SA~~~~gi  164 (670)
                      +|++++.+++.+.. |+..+...  ..++|+++|+||+|+.+....   .+ +.......  . ...++++|||++|.||
T Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~-i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (183)
T 1moz_A           93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGALSA---SE-VSKELNLVELKDRSWSIVASSAIKGEGI  167 (183)
T ss_dssp             EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HH-HHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HH-HHHHhCcccccCCceEEEEccCCCCcCH
Confidence            99999999999885 66666443  358999999999999764221   11 11111110  0 1126999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       168 ~~l~~~l~~~~~  179 (183)
T 1moz_A          168 TEGLDWLIDVIK  179 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.87  E-value=1.2e-22  Score=193.58  Aligned_cols=164  Identities=13%  Similarity=0.199  Sum_probs=115.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCCCCCeE--eCCcc---cCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF---YPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~~~~~~~--~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      .+||+|+|++|||||||+++|++.  .+.....++.+...  .....   ....+.+.+|||+|++++....+.+++++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  35444333333222  11111   235678999999999998888899999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccc--hhhhhhHHHHHhccC--CeEEEeCcc
Q 005908           85 AVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQFREI--ETCVECSAT  159 (670)
Q Consensus        85 ~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~SA~  159 (670)
                      ++++|||++++ .+++.+. .|+..+....+++|+++|+||+|+.+.+.+ .  ..+....+++.++..  .+++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQR-KACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHH-HHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhh-HHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999997 5788887 598888776668999999999999754322 1  012223333333310  138999999


Q ss_pred             cCC-CchHHHHHHHHHHcC
Q 005908          160 TMI-QVPDVFYYAQKAVLH  177 (670)
Q Consensus       160 ~~~-gi~~l~~~i~~~~~~  177 (670)
                      +|. |++++++.+.+.+..
T Consensus       160 ~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          160 EESDALAKLRKTIINESLN  178 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHC
T ss_pred             cCchhHHHHHHHHHHHHhc
Confidence            997 999999999887764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.87  E-value=1e-21  Score=186.52  Aligned_cols=157  Identities=23%  Similarity=0.313  Sum_probs=121.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+++|++|||||||+++|.+..+.. +.+|.+  +....+..+  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~   86 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPY--WRSYFENTDI   86 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHH--HHHHHTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence            567999999999999999999999886543 234544  334455554  467889999999988877  7888999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~  573 (670)
                      +++|||++++.+|.....|+..+.......  +.|+++|+||+|+.+....    +++.+.++.       .+++++||+
T Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (181)
T 1fzq_A           87 LIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQDLLTAAPA----SEIAEGLNLHTIRDRVWQIQSCSAL  160 (181)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcCcccCCCH----HHHHHHhCchhccCCceEEEEccCC
Confidence            999999999999999998888775432222  6999999999999864322    223333221       148999999


Q ss_pred             cC-ChHHHHHHHHHHHhC
Q 005908          574 SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~  590 (670)
                      +| |++++|+++.+.+..
T Consensus       161 ~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          161 TGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             TCTTHHHHHHHHHHTC--
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            99 999999999987653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.87  E-value=1.4e-21  Score=185.67  Aligned_cols=157  Identities=18%  Similarity=0.205  Sum_probs=119.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ..+.+||+|+|.+|||||||+|+|+++.+ ..+.+|.+...  ..+...  ...+.+||++|++.+..+  +..+++.+|
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   90 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTE   90 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCG--GGGGGTTCC
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence            45679999999999999999999999887 33335655433  334444  377889999999988887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH-----HhCCCCcEEeeccc
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMKS  574 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSA~~  574 (670)
                      ++++|+|++++.+++.+..|+..+.......  +.|+++|+||+|+.+.. ..+++.+...     ..++ +++++||++
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~  166 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW-HIQACCALT  166 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCE-EEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhC--CCeEEEEEECCCcccCC-CHHHHHHHhCcccccCCce-EEEEccCCC
Confidence            9999999999999999999988887643222  69999999999997632 2222322221     1122 589999999


Q ss_pred             C-ChHHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIWA  587 (670)
Q Consensus       575 g-~v~~l~~~l~~~  587 (670)
                      | |++++|++|.+.
T Consensus       167 g~gi~~l~~~l~~~  180 (181)
T 2h17_A          167 GEGLCQGLEWMMSR  180 (181)
T ss_dssp             TBTHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHhh
Confidence            9 999999998753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.87  E-value=6.4e-22  Score=205.88  Aligned_cols=159  Identities=12%  Similarity=0.133  Sum_probs=119.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .++.+||+|+|++|||||||+++|++..+....|++. ..  ...+...++.+.||||||++.+...+..+++.+|++|+
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~-~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-FN--VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETT-EE--EEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccc-eE--EEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4467899999999999999999999988765554322 21  12344567899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------CCeEEEeCcccC
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM  161 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~  161 (670)
                      |||++++.+++.+...|...++.. .+++|++||+||+|+.+....       ..+...++.      ..++++|||++|
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-------~~i~~~~~~~~~~~~~~~~~~vSAk~g  311 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRHRNWYIQATCATSG  311 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH-------HHHHHHhchhhhhcCCCEEEEEECCCC
Confidence            999999999999987555555443 358999999999999764322       222222221      126999999999


Q ss_pred             CCchHHHHHHHHHHcC
Q 005908          162 IQVPDVFYYAQKAVLH  177 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~  177 (670)
                      .||+++|+.|.+.+..
T Consensus       312 ~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          312 DGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             BTHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999988754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.87  E-value=1.5e-21  Score=184.41  Aligned_cols=160  Identities=16%  Similarity=0.119  Sum_probs=115.0

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+.++|+++|++|||||||+++|++..+.....+..........+..++..+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            35678999999999999999999999988766532222222222234445678999999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-------cCCeEEEeCccc
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-------EIETCVECSATT  160 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~SA~~  160 (670)
                      +|+|+++........  ++..+...  ++|+++|+||+|+.....    ++ .........       ...++++|||++
T Consensus        84 ~v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEANP----DR-VMQELMEYNLVPEEWGGDTIFCKLSAKT  154 (178)
T ss_dssp             EEEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSCH----HH-HHHHHTTTTCCBTTTTSSEEEEECCSSS
T ss_pred             EEEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCCH----HH-HHHHHHhcCcChhHcCCcccEEEEecCC
Confidence            999998854333322  33334333  799999999999976321    11 111112221       113799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 005908          161 MIQVPDVFYYAQKAVL  176 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (670)
                      |.||+++|+++.+.+.
T Consensus       155 ~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          155 KEGLDHLLEMILLVSE  170 (178)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999988764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.86  E-value=6.3e-21  Score=196.56  Aligned_cols=174  Identities=18%  Similarity=0.179  Sum_probs=129.8

Q ss_pred             CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCC-ceeEEEEeCCCCccch--------
Q 005908            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK--------   73 (670)
Q Consensus         5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~--------   73 (670)
                      ..+...+.-.|+|+|++|||||||+|+|++.++...  .+++... .+...+... +..+.+|||||+.++.        
T Consensus         3 ~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~-~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~   81 (308)
T 3iev_A            3 HHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM-RVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHS   81 (308)
T ss_dssp             ----CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-EEEEEEecCCCCeEEEEECcCCCccccchhHHHH
Confidence            455677888999999999999999999999986532  3332221 122233444 8899999999986544        


Q ss_pred             --hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC
Q 005908           74 --GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE  151 (670)
Q Consensus        74 --~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (670)
                        .....+++.+|++++|+|+++..++.+.. .|...++..  ++|+++|+||+|+......  ..+....+...++...
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~~~--~~~~~~~l~~~~~~~~  156 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPAKN--VLPLIDEIHKKHPELT  156 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSGGG--GHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCHHH--HHHHHHHHHHhccCCC
Confidence              45568899999999999999988888765 468888775  8999999999999743332  4555667777775445


Q ss_pred             eEEEeCcccCCCchHHHHHHHHHHcCCCCCCCcc
Q 005908          152 TCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDH  185 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~~~~~~~  185 (670)
                      +++++||++|.|++++++.+.+.+... .+.+..
T Consensus       157 ~i~~vSA~~g~gv~~L~~~l~~~l~~~-~~~~~~  189 (308)
T 3iev_A          157 EIVPISALKGANLDELVKTILKYLPEG-EPLFPE  189 (308)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHSCBC-CCSSCT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCccC-CCCCCc
Confidence            799999999999999999999887543 334443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.86  E-value=2e-21  Score=186.41  Aligned_cols=156  Identities=19%  Similarity=0.227  Sum_probs=118.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+|+|++|||||||+++|+++.+.. +.||.+  +....++.  ....+.+||++|++.+..+  +..+++.+|+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   99 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPL--WRHYFQNTQG   99 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTT--HHHHHHTCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence            467999999999999999999999887753 234544  33444544  3477889999999888877  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~  573 (670)
                      +++|+|++++.+++.+..|+..+.......  +.|+++|+||+|+.+...    .+++.+.++.       .+++++||+
T Consensus       100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SA~  173 (192)
T 2b6h_A          100 LIFVVDSNDRERVQESADELQKMLQEDELR--DAVLLVFANKQDMPNAMP----VSELTDKLGLQHLRSRTWYVQATCAT  173 (192)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhcccccC--CCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEECcCC
Confidence            999999999999999999988887643322  699999999999976422    2333333332       148999999


Q ss_pred             cC-ChHHHHHHHHHHHh
Q 005908          574 SK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~  589 (670)
                      +| |++++|++|.+.+.
T Consensus       174 ~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          174 QGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TTBTHHHHHHHHHHHTT
T ss_pred             CcCCHHHHHHHHHHHHh
Confidence            99 99999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.86  E-value=6.7e-22  Score=188.40  Aligned_cols=163  Identities=13%  Similarity=0.121  Sum_probs=119.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEc---CCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQ---PGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~t~~~~~~~~~vd~---~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (670)
                      .+||+|+|++|||||||+++|++.  .+...+.+|++.++....+..   .+....+.+||++|++++..+  ...+++.
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~   79 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST--HPHFMTQ   79 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT--SHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh--hHHHccC
Confidence            479999999999999999999985  344444567665554444433   224567889999999999887  7788899


Q ss_pred             ccEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc----HHHHHHHHHHhCCC---CcEE
Q 005908          498 CDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSARVTQELGIE---PPIP  569 (670)
Q Consensus       498 ad~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~---~~~~  569 (670)
                      +|++++|||++++ .++..+..|+..+.....    +.|+++|+||+|+.+....    ....+.+++.++++   ++++
T Consensus        80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T 2zej_A           80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARAS----SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF  155 (184)
T ss_dssp             SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT----TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred             CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC----CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence            9999999999998 578889999998876542    6899999999999864332    22334555555654   3899


Q ss_pred             eecccC--ChHHHHHHHHHHHhCC
Q 005908          570 VSMKSK--DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       570 vSA~~g--~v~~l~~~l~~~~~~~  591 (670)
                      +||++|  +++++++.+.+.+...
T Consensus       156 ~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          156 VNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             EecccCchhHHHHHHHHHHHHhcc
Confidence            999998  6999999999988653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.86  E-value=3.4e-21  Score=180.04  Aligned_cols=152  Identities=19%  Similarity=0.244  Sum_probs=113.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh------hhhchHhhcc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA  496 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~  496 (670)
                      .++|+++|++|||||||+|+|.+..+...+.++++.+.....+...+  ..+.+||++|++.+.      .+  ...+++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~--~~~~~~   78 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEII--ARDYII   78 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHH--HHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHH--HHHHHh
Confidence            47999999999999999999999876544445444444444555542  578899999987653      23  344554


Q ss_pred             --cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       497 --~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                        ++|++++|+|+++.   +....|+..+.+.      +.|+++|+||+|+...+....+.+++++.++++ ++++||++
T Consensus        79 ~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~SA~~  148 (165)
T 2wji_A           79 NEKPDLVVNIVDATAL---ERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAAK  148 (165)
T ss_dssp             HHCCSEEEEEEETTCH---HHHHHHHHHHHHT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGGG
T ss_pred             cCCCCEEEEEecCCch---hHhHHHHHHHHhc------CCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEEcCC
Confidence              89999999999874   3455677776653      699999999999865333333567888888875 99999999


Q ss_pred             C-ChHHHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIWAA  588 (670)
Q Consensus       575 g-~v~~l~~~l~~~~  588 (670)
                      | |++++|+++.+.+
T Consensus       149 ~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          149 KMGIEELKKAISIAV  163 (165)
T ss_dssp             TBSHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHh
Confidence            9 9999999998865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=4.8e-21  Score=181.94  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=118.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+|+|++|||||||+|+|.++.+ ..+.+|.+.  ....+..+  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   88 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYK--NLKLNVWDLGGQTSIRPY--WRCYYADTAA   88 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEET--TEEEEEEEEC----CCTT--GGGTTTTEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence            4679999999999999999999998877 334456553  33444444  377889999999888777  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC----CCcEEeecccC-
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI----EPPIPVSMKSK-  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~vSA~~g-  575 (670)
                      +++|+|++++.+++.+..|+..+.......  +.|+++|+||+|+.+.. ..+++.+.......    .+++++||++| 
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (183)
T 1moz_A           89 VIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGAL-SASEVSKELNLVELKDRSWSIVASSAIKGE  165 (183)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCC-CHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHcChhhC--CCeEEEEEECCCCCCCC-CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            999999999999999999988886653222  79999999999997632 22222222211111    15899999999 


Q ss_pred             ChHHHHHHHHHHHh
Q 005908          576 DLNNVFSRIIWAAE  589 (670)
Q Consensus       576 ~v~~l~~~l~~~~~  589 (670)
                      |+++++++|.+.+.
T Consensus       166 gi~~l~~~l~~~~~  179 (183)
T 1moz_A          166 GITEGLDWLIDVIK  179 (183)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.85  E-value=4e-21  Score=183.68  Aligned_cols=161  Identities=19%  Similarity=0.190  Sum_probs=123.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+|+|++|||||||+|+|.++.+.. +.+|++.  ....+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~   92 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYK--NISFEVWDLGGQTGVRPY--WRCYFSDTDA   92 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEET--TEEEEEEEECCSSSSCCC--CSSSSTTCCE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhhcCCE
Confidence            456999999999999999999999887754 3456553  33444443  467889999999888777  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH----HHhCCCCcEEeecccC-
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g-  575 (670)
                      +++|+|++++.++.....|+..+.......  +.|+++|+||+|+.+.....+..+.+.    +..++ +++++||++| 
T Consensus        93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  169 (189)
T 2x77_A           93 VIYVVDSTDRDRMGVAKHELYALLDEDELR--KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIVKSSSKTGD  169 (189)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCSTTT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTCT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhhcC--CCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEEEccCCCcc
Confidence            999999999999999999888876643323  699999999999976432211111111    11122 5899999999 


Q ss_pred             ChHHHHHHHHHHHhCC
Q 005908          576 DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~~  591 (670)
                      |++++++++.+.+...
T Consensus       170 gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          170 GLVEGMDWLVERLREQ  185 (189)
T ss_dssp             THHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999988643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.85  E-value=4e-21  Score=189.69  Aligned_cols=165  Identities=15%  Similarity=0.125  Sum_probs=114.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCc------cc---hhhhHHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL------EN---KGKLNEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~---~~~~~~~   79 (670)
                      .+.+||+|+|++|||||||+|+|++..+... .+.+.... ....+...+..+.+|||||+.      ..   ...+..+
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  105 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL  105 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee-eeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence            4579999999999999999999999886422 22211111 111223356889999999983      21   1123345


Q ss_pred             hccCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh--hhhhHHHHHhccCCeEEEe
Q 005908           80 LKRADAVVLTYACNQQSTLSRL-SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  156 (670)
                      +..+|++|+|||++++.++... ...|+..+....+++|+++|+||+|+...+.+ ...  +....+....+...++++|
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  184 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL-SIDNKLLIKQILDNVKNPIKFSSF  184 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC-CHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh-HHHHHHHHHHHHHhcCCCceEEEE
Confidence            7889999999999998776522 12366777665568999999999999876554 221  2344555554322379999


Q ss_pred             CcccCCCchHHHHHHHHHHc
Q 005908          157 SATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ||++|.||+++|+.+.+.+.
T Consensus       185 SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          185 STLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHH
Confidence            99999999999999998775

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.85  E-value=6e-21  Score=199.58  Aligned_cols=165  Identities=21%  Similarity=0.344  Sum_probs=138.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .+..++|+++|.+|||||||++++++..+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d  228 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTD  228 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGTTT--GGGGCTTCS
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE-EEEEECCEEEEEEEEeCCCchhhhHH--HHHhccCCC
Confidence            456799999999999999999999998887777777776554 44566656667779999999988877  778899999


Q ss_pred             EEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCC
Q 005908          500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIE  565 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~  565 (670)
                      ++++|||++++.+|..+. .|+..+.....    ++|+++|+||+|+.+.             ....+++.++++.+++.
T Consensus       229 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  304 (332)
T 2wkq_A          229 VFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  304 (332)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence            999999999999999887 78888877654    6999999999999653             23467788899999985


Q ss_pred             CcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          566 PPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       566 ~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      +++++||++| |++++|+.|.+.+..+
T Consensus       305 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          305 KYLECSALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence            6999999999 9999999999987653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=3.5e-21  Score=185.00  Aligned_cols=162  Identities=13%  Similarity=0.091  Sum_probs=110.3

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCC----------Cccchhh
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGK   75 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~   75 (670)
                      .......++|+|+|++|||||||+|+|++..+.....++.+.+.....+.. +..+.+|||||          ++.+...
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence            344556899999999999999999999998755443322222221001111 23699999999          5555666


Q ss_pred             hHHHhccC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--C
Q 005908           76 LNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--I  150 (670)
Q Consensus        76 ~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~  150 (670)
                      +..+++.+   |++++|+|++++.++....  +...+...  ++|+++|+||+|+...+..   ....+.+.+.+..  .
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTT
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCC
Confidence            77778777   9999999999988877653  55566554  8999999999999765433   2222333333321  2


Q ss_pred             CeEEEeCcccCCCchHHHHHHHHHH
Q 005908          151 ETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       151 ~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      .+++++||++|.||+++|+++.+.+
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHh
Confidence            4799999999999999999998765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.76  E-value=4.8e-23  Score=199.76  Aligned_cols=161  Identities=20%  Similarity=0.344  Sum_probs=131.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+++|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~  104 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDV  104 (204)
Confidence            45699999999999999999999998887776677765543 34455555667779999999888887  7778999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.+++.+. .|+..+.....    +.|+++|+||+|+.+..             ...++..++++.++..+
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
Confidence            99999999999999887 78777766543    58999999999997642             22456677788888756


Q ss_pred             cEEeecccC-ChHHHHHHHHHHH
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                      ++++||++| |++++|+.|.+.+
T Consensus       181 ~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999 9999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.85  E-value=2.6e-20  Score=179.72  Aligned_cols=163  Identities=19%  Similarity=0.343  Sum_probs=135.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+.|....+.+||++|++.+..+  ...+++.+|+
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~   80 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--TSAYYRGAVG   80 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--CHHHHTTCSE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHHhcCCE
Confidence            35689999999999999999999999988887788877777777888866677889999999888776  6778889999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|+|+++..++..+..|+..+......   +.|+++|+||+|+.+... ...+++.++...++. ++++||+++ |++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d~Sal~~~~i~  156 (199)
T 2f9l_A           81 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVE  156 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            99999999999999888898877654322   589999999999976433 356788888888876 899999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|+.|.+.+.
T Consensus       157 ~l~~~l~~~~~  167 (199)
T 2f9l_A          157 EAFKNILTEIY  167 (199)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.84  E-value=4.7e-20  Score=190.05  Aligned_cols=167  Identities=20%  Similarity=0.253  Sum_probs=129.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCceEEEEEecCChhhHh----------h
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----------K  487 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----------~  487 (670)
                      ....-.|+|+|++|||||||+|+|++..+..++..  |+.. .....+..+ ....+.+|||+|.....          .
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~-~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM-RVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-EEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            45567899999999999999999999998765542  3332 222333333 26778899999974322          3


Q ss_pred             hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CCcccHHHHHHHHHHhC-CC
Q 005908          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELG-IE  565 (670)
Q Consensus       488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~-~~  565 (670)
                      .  ...+++.+|++++|+|++++.++.....|+..+...      +.|+++|+||+|+. +........+.+.+.++ ..
T Consensus        85 ~--~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~  156 (308)
T 3iev_A           85 I--AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELT  156 (308)
T ss_dssp             H--HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCC
T ss_pred             H--HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCC
Confidence            3  567889999999999999998888877777777653      69999999999998 55555777788888874 56


Q ss_pred             CcEEeecccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908          566 PPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP  596 (670)
Q Consensus       566 ~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~  596 (670)
                      +++++||++| |++++++.+.+.+.......+
T Consensus       157 ~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~  188 (308)
T 3iev_A          157 EIVPISALKGANLDELVKTILKYLPEGEPLFP  188 (308)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHSCBCCCSSC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCccCCCCCC
Confidence            7999999999 999999999999865443333

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.84  E-value=7e-21  Score=196.27  Aligned_cols=161  Identities=12%  Similarity=0.140  Sum_probs=122.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCC-CCCCCeEeCCcccCCceeEEEEeCCCCccc-----hhhhHHHhcc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----KGKLNEELKR   82 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~   82 (670)
                      ..+||+++|++|||||||+++|+++.  +....+ ++.+.......+ .+++.+.+|||||++.+     ...+..++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            56899999999999999999999874  333222 222222222222 34789999999999887     6778899999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHH---HhcCCCCCEEEEEeCCCCCC--CCC----ccchhhhhhHHHHHhcc-CCe
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPEL---RRLEIKVPIIVAGCKLDLRG--DHN----ATSLEEVMGPIMQQFRE-IET  152 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l---~~~~~~~pvilv~NK~Dl~~--~~~----~~~~~~~~~~~~~~~~~-~~~  152 (670)
                      +|++|+|||++++.+++++.. |...+   +...+++|+++|+||+|+..  .+.    +  ..+.+..++..++. ..+
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v--~~~~~~~~~~~~g~~~~~  157 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQI--MMKNLSETSSEFGFPNLI  157 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHH--HHHHHHHHHHTTTCCSCE
T ss_pred             CCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHH--HHHHHHHHHHHcCCCCeE
Confidence            999999999999999999863 64444   44567899999999999976  222    2  23455677777762 248


Q ss_pred             EEEeCcccCCCchHHHHHHHHHHc
Q 005908          153 CVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       153 ~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      +++|||++ .|+.++|..++..+.
T Consensus       158 ~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          158 GFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEEeeecC-ChHHHHHHHHHHHHc
Confidence            99999999 899999998888654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.84  E-value=7.4e-21  Score=181.54  Aligned_cols=160  Identities=18%  Similarity=0.173  Sum_probs=118.7

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHh
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEEL   80 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~   80 (670)
                      +.++.++|+++|++|||||||+++|++..+... .+++.. ......+...+..+.+|||||++.+.      .....++
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTV-EKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCC-EEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeec-cceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHH
Confidence            345779999999999999999999998764333 444322 22223344456899999999998764      3455666


Q ss_pred             c--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           81 K--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        81 ~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +  .+|++++|+|.++   ++... .|...+...  ++|+++|+||+|+...+.+ .  .....+++.++  .+++++||
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~Sa  150 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSA  150 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBG
T ss_pred             hccCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhccccccc-h--HHHHHHHHHhC--CCeEEEEe
Confidence            4  4999999999875   44444 477777664  8999999999998654443 2  34566777776  37999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC
Q 005908          159 TTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      ++|.||+++|+.+.+.+....
T Consensus       151 ~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          151 AKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GGTBSHHHHHHHHHHHHTTC-
T ss_pred             cCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999886554

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.84  E-value=1.6e-20  Score=188.30  Aligned_cols=156  Identities=17%  Similarity=0.112  Sum_probs=119.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh------hHHHh--
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL--   80 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--   80 (670)
                      ++.++|+++|++|||||||+|+|++..+. .+.|++.. ......+...+..+.+|||||+..+...      ...++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTV-EKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCC-EEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceE-EEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            46799999999999999999999998753 33554332 2233344556789999999999876542      24555  


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      ..+|++++|+|+++.++..    +|...+...  ++|+++|+||+|+...+.+ .  .....+.+.++  .+++++||++
T Consensus        82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i-~--~~~~~l~~~lg--~~vi~~SA~~  150 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM-K--IDRYELQKHLG--IPVVFTSSVT  150 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--BCHHHHHHHHC--SCEEECCTTT
T ss_pred             cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch-H--HHHHHHHHHcC--CCEEEEEeeC
Confidence            5899999999999876533    366666665  8999999999998765444 2  23567778887  3899999999


Q ss_pred             CCCchHHHHHHHHHHcC
Q 005908          161 MIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~  177 (670)
                      |.||+++|+.+.+.+..
T Consensus       151 g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          151 GEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             CTTHHHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHHhhc
Confidence            99999999999987753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.84  E-value=1.3e-20  Score=180.82  Aligned_cols=166  Identities=17%  Similarity=0.161  Sum_probs=114.7

Q ss_pred             CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCC----------Cccch
Q 005908            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENK   73 (670)
Q Consensus         4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~   73 (670)
                      +........+||+|+|++|||||||+|+|++..+....+. .+.+. .......+..+.+|||||          ++.+.
T Consensus        15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~t~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKT-PGKTR-SINFYLVNSKYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSS-CCCCC-CEEEEEETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCC-CCCcc-CeEEEEECCcEEEEECCCCccccCChhhHHHHH
Confidence            3444556789999999999999999999999874433222 21211 111222234688999999          44455


Q ss_pred             hhhHHHhccC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC
Q 005908           74 GKLNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (670)
Q Consensus        74 ~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (670)
                      ..+..+++.+   |++++|+|+++..+.....  +...+...  ++|+++|+||+|+.+........+....+....+. 
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-  167 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-  167 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-
Confidence            6666777766   9999999998765544432  55556655  79999999999997543321222333444444332 


Q ss_pred             CeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          151 ETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       151 ~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      .++++|||++|.||+++|+++.+.+.
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhh
Confidence            37999999999999999999988764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.84  E-value=7e-21  Score=179.24  Aligned_cols=153  Identities=24%  Similarity=0.277  Sum_probs=108.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~   79 (670)
                      ++.+||+|+|++|||||||+|+|++..+  ....+++.... ....+..++..+.+|||||+.++...        ...+
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV-LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-EEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-eeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3568999999999999999999998764  23344432221 11223334567999999998754221        1246


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      ++.+|++++|||++++.+++..  .|+..+.... .++|+++|+||+|+......  ...       ..+  .++++|||
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~-------~~~--~~~~~~SA  147 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETLG--MSE-------VNG--HALIRLSA  147 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--EEE-------ETT--EEEEECCT
T ss_pred             HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchhh--hhh-------ccC--CceEEEeC
Confidence            8999999999999998887643  4777776543 47999999999998643211  111       111  36999999


Q ss_pred             ccCCCchHHHHHHHHHHc
Q 005908          159 TTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~  176 (670)
                      ++|.||+++|+.+.+.+.
T Consensus       148 ~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          148 RTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTCTTHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999988753

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.3e-21  Score=196.43  Aligned_cols=164  Identities=14%  Similarity=0.158  Sum_probs=116.3

Q ss_pred             CCceeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCCCCCCc-ccceEEEE--------E------EcCCCce
Q 005908          420 ERNVFRCLLFGPQ---------NAGKSALLNSFLE---RPFSENYAPTT-GEQYAVNV--------V------DQPGGNK  472 (670)
Q Consensus       420 ~~~~~kI~ivG~~---------~vGKSSLin~l~~---~~~~~~~~~t~-~~~~~~~~--------v------d~~g~~~  472 (670)
                      ....+||+|+|.+         |||||||+|+|++   ..+...+.+|+ +.++....        .      ..++...
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4567999999999         9999999999999   55555555654 32222111        1      1234556


Q ss_pred             EEEEEe-----------------------cCChhhHhhhhchHhhcc---------------------cccEEEEEEECC
Q 005908          473 KTLILQ-----------------------EIPEEGVKKILSNKEALA---------------------SCDVTIFVYDSS  508 (670)
Q Consensus       473 ~~~i~d-----------------------~~g~~~~~~~~~~~~~~~---------------------~ad~vllv~D~s  508 (670)
                      .+.+||                       ++|++++..+  +..+++                     ++|++|+|||++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA--EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECT--TCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhh--hhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            778898                       4455555544  444555                     799999999999


Q ss_pred             Cc--ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh-CCCCcEEeecccC-ChHHHHHHH
Q 005908          509 DE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-GIEPPIPVSMKSK-DLNNVFSRI  584 (670)
Q Consensus       509 ~~--~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSA~~g-~v~~l~~~l  584 (670)
                      ++  .+|+.+..|+..+.......  ++|+++|+||+|+...+.. ++.+++++.. ++ +++++||++| |++++|++|
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~-~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKT--KKPIVVVLTKCDEGVERYI-RDAHTFALSKKNL-QVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHT--TCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSC-CEEECBTTTTBSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccC--CCCEEEEEEcccccccHHH-HHHHHHHHhcCCC-eEEEEECCCCCCHHHHHHHH
Confidence            98  99999999999887652212  6999999999999764332 5666777664 55 5999999999 999999999


Q ss_pred             HHHHh
Q 005908          585 IWAAE  589 (670)
Q Consensus       585 ~~~~~  589 (670)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.84  E-value=1.9e-20  Score=188.88  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=115.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHhc--c
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--R   82 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~   82 (670)
                      .++|+++|++|||||||+|+|++.. +..++|++.... ....+.. +..+.+|||||+..+.      .....++.  .
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~-~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC-EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE-EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            5899999999999999999999876 555566533322 2223334 6789999999998765      34456665  6


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      +|++++|+|+++.++..    +|...+...  ++|+++|+||+|+...+.+ .  .....+.+.++  .++++|||++|.
T Consensus        81 ~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg--~~vi~~SA~~g~  149 (272)
T 3b1v_A           81 ADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQGK-K--INVDKLSYHLG--VPVVATSALKQT  149 (272)
T ss_dssp             CSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBTTTTB
T ss_pred             CCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCCc-H--HHHHHHHHHcC--CCEEEEEccCCC
Confidence            99999999998865432    366666664  8999999999998654443 2  33466777776  379999999999


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++|+.+.+.+.
T Consensus       150 gi~el~~~i~~~~~  163 (272)
T 3b1v_A          150 GVDQVVKKAAHTTT  163 (272)
T ss_dssp             SHHHHHHHHHHSCT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.84  E-value=6.5e-20  Score=203.92  Aligned_cols=164  Identities=19%  Similarity=0.208  Sum_probs=118.3

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEe--------CCcc--cCCceeEEEEeCCCCccchhhhH
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--------PPDF--YPDRVPVTIIDTSSSLENKGKLN   77 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~~~   77 (670)
                      .....+||+++|.+|||||||+++|++..+.....++.+....        ...+  ...++.+.+|||||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4667899999999999999999999999887664443333221        1222  23478999999999999999999


Q ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      .+++.+|++|+|||+++.+..   . +|...+....+++|+|+|+||+|+...+.+ . .+.........+  .++++||
T Consensus       117 ~~l~~~d~ii~V~D~s~~~~~---~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~vS  188 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDSNK---H-YWLRHIEKYGGKSPVIVVMNKIDENPSYNI-E-QKKINERFPAIE--NRFHRIS  188 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGGGH---H-HHHHHHHHHSSSCCEEEEECCTTTCTTCCC-C-HHHHHHHCGGGT--TCEEECC
T ss_pred             HHccCCcEEEEEEeCCCchhH---H-HHHHHHHHhCCCCCEEEEEECCCccccccc-C-HHHHHHHHHhcC--CceEEEe
Confidence            999999999999999876443   3 599999888778999999999999876654 2 334455555554  3699999


Q ss_pred             cccCCCchHHHHHHHHHHcCCC
Q 005908          158 ATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      |++|.||+++++.+.+.+....
T Consensus       189 A~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          189 CKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             C-----CTTHHHHHHHHHTCTT
T ss_pred             cCcccCHHHHHHHHHHHHhccc
Confidence            9999999999999999887643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.83  E-value=5.4e-21  Score=191.85  Aligned_cols=162  Identities=15%  Similarity=0.092  Sum_probs=113.5

Q ss_pred             CCCcceEEEEEcCC---------CCCHHHHHHHHHc---CCCCCCCCCCC-CCeE--eCCc--------------ccCCc
Q 005908            8 SSRTGVRVVVVGDR---------GTGKSSLIAAAAT---ESVPEKVPPVH-APTR--LPPD--------------FYPDR   58 (670)
Q Consensus         8 ~~~~~~kI~ivG~~---------~vGKSSLi~~l~~---~~~~~~~~~~~-~~~~--~~~~--------------~~~~~   58 (670)
                      ...+.+||+|+|++         |||||||+++|++   ..+.....++. +...  ....              ++...
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35567999999999         9999999999999   44544433221 1111  1111              23467


Q ss_pred             eeEEEEe-----------------------CCCCccchhhhHHHhc---------------------cCCEEEEEEECCC
Q 005908           59 VPVTIID-----------------------TSSSLENKGKLNEELK---------------------RADAVVLTYACNQ   94 (670)
Q Consensus        59 ~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~ii~v~d~~~   94 (670)
                      +.+.|||                       ++|++.+...+..+++                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       5566655555556666                     7999999999999


Q ss_pred             h--hhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908           95 Q--STLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        95 ~--~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      +  .+++.+.. |+..+...  ..++|++||+||+|+...+.+    +....++..... .++++|||++|.||+++|+.
T Consensus       175 ~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~~-~~~~e~SAk~g~gv~elf~~  248 (255)
T 3c5h_A          175 GMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKKN-LQVVETSARSNVNVDLAFST  248 (255)
T ss_dssp             ----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSSS-CCEEECBTTTTBSHHHHHHH
T ss_pred             CchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcCC-CeEEEEECCCCCCHHHHHHH
Confidence            8  99999884 88877653  358999999999999654322    334555554322 37999999999999999999


Q ss_pred             HHHHH
Q 005908          171 AQKAV  175 (670)
Q Consensus       171 i~~~~  175 (670)
                      +.+.+
T Consensus       249 l~~~l  253 (255)
T 3c5h_A          249 LVQLI  253 (255)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.83  E-value=9.2e-21  Score=186.29  Aligned_cols=168  Identities=12%  Similarity=0.021  Sum_probs=114.2

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCCCCCCeEeCCccc-CCceeEEEEeCCCCcc----------c
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESV---PEKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLE----------N   72 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~----------~   72 (670)
                      ......++|+|+|.+|||||||+|+|++..+   ....+++..... ...+. ..+..+.||||||...          +
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN-YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE-EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE-EEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            3445679999999999999999999999872   222333322222 12222 4568899999999643          3


Q ss_pred             hhhhHHHhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--
Q 005908           73 KGKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--  147 (670)
Q Consensus        73 ~~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--  147 (670)
                      ...+..+++.   +|++++|+|+++..+...  ..|...++..  ++|+++|+||+|+..........+.+......+  
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~  178 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD  178 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence            4455566666   788999999987655433  2477777765  899999999999976432201112222222332  


Q ss_pred             ---ccCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          148 ---REIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       148 ---~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                         ....+++++||++|.||+++++.+.+.+..+.
T Consensus       179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence               22347999999999999999999999876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.83  E-value=1.9e-20  Score=173.66  Aligned_cols=150  Identities=21%  Similarity=0.240  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc-------chhhhHHHhccC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGKLNEELKRA   83 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~a   83 (670)
                      .||+++|++|||||||+++|.+..+.  ...+++.... ....+...+..+.+|||||+..       +...+..+++.+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL-KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CC-EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            58999999999999999999988743  2233322111 1122334556899999999886       334456788999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      |++++|+|+++..+...  ..+...++..  ++|+++|+||+|+.+..      +....+. +++ ..+++++||++|.|
T Consensus        81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~-~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE------LYLGPLY-GLG-FGDPIPTSSEHARG  148 (161)
T ss_dssp             SEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG------GGCGGGG-GGS-SCSCEECBTTTTBS
T ss_pred             CEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch------HhHHHHH-hCC-CCCeEEEecccCCC
Confidence            99999999998655443  2355555554  79999999999997542      2222333 344 23699999999999


Q ss_pred             chHHHHHHHHHH
Q 005908          164 VPDVFYYAQKAV  175 (670)
Q Consensus       164 i~~l~~~i~~~~  175 (670)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.83  E-value=4.3e-20  Score=180.29  Aligned_cols=162  Identities=16%  Similarity=0.153  Sum_probs=112.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-ceEEEEEecCChhhHhh-hhchHhhcccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKK-ILSNKEALASC  498 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~a  498 (670)
                      +..+||+|+|.+|||||||+++|+++.+...+.+ +...+.  .+.+++. ...+.+||++|++.+.. +  ...+++.+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~   79 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQL--LDRFKSSA   79 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHH--HHHHGGGE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHH--HHHHHhhC
Confidence            3468999999999999999999999987766643 333333  2566644 57889999999998887 6  67789999


Q ss_pred             cEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--------------
Q 005908          499 DVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--------------  563 (670)
Q Consensus       499 d~vllv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------  563 (670)
                      |++++|||+++.. ++.....++..+.........++|+++|+||+|+..........+.+.+.++              
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence            9999999999853 4555555444433221111116899999999999875443322222222211              


Q ss_pred             -----------------------CCCcEEeecccC-------ChHHHHHHHHHH
Q 005908          564 -----------------------IEPPIPVSMKSK-------DLNNVFSRIIWA  587 (670)
Q Consensus       564 -----------------------~~~~~~vSA~~g-------~v~~l~~~l~~~  587 (670)
                                             ..+++++||++|       |++++|++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                   224899999998       899999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.83  E-value=3.5e-20  Score=175.05  Aligned_cols=161  Identities=18%  Similarity=0.191  Sum_probs=118.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....++|+|+|.+|||||||+|+|++..+...+.++++.++....+..++  ..+.+||++|++.+..+  ...++..+|
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~d   80 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTM--RARGAQVTD   80 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCS--CCSSCCCCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHH--HHHHHhhCC
Confidence            35678999999999999999999999988776666665555545555553  45678999999888877  677889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC--------CCcEEee
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVS  571 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS  571 (670)
                      ++++|+|++++..... ...+..+...      +.|+++|+||+|+.+..  .+.........+.        .+++++|
T Consensus        81 ~~i~v~d~~~~~~~~~-~~~l~~~~~~------~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           81 IVILVVAADDGVMPQT-VEAINHAKAA------NVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             EEEEEEETTCCCCHHH-HHHHHHHGGG------SCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             EEEEEEECCCCCcHHH-HHHHHHHHhC------CCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            9999999998644222 2223333221      69999999999998632  2222222222221        2589999


Q ss_pred             cccC-ChHHHHHHHHHHHhCCCC
Q 005908          572 MKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      |++| |++++|++|.+.+...+.
T Consensus       152 a~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHhhhhhcc
Confidence            9999 999999999998865443

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.83  E-value=1.8e-20  Score=180.39  Aligned_cols=160  Identities=13%  Similarity=0.110  Sum_probs=115.0

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceE--EEEEEcC-CCceEEEEEecCChhhHhhhhch---H
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA--VNVVDQP-GGNKKTLILQEIPEEGVKKILSN---K  492 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~--~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~---~  492 (670)
                      ..++.+||+++|.+|||||||++++.+.....   ++.+..+.  .....+. +....+.+||++|++.+..+  .   .
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~   90 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFDYE   90 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCCHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhhcc
Confidence            34567999999999999999999988853332   22222211  1222222 45678889999999888776  4   7


Q ss_pred             hhcccccEEEEEEECCCc--ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--------ccHHHHHHHHH--
Q 005908          493 EALASCDVTIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--------MAVQDSARVTQ--  560 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~--~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--------~~~~~~~~~~~--  560 (670)
                      .+++++|++|+|||++++  +++..+..|+..+.....    +.|+++|+||+|+.+..        ......+++++  
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~  166 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG  166 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence            889999999999999997  566666667666644333    69999999999987632        11344566666  


Q ss_pred             --HhCCCCcEEeecccCChHHHHHHHHHHH
Q 005908          561 --ELGIEPPIPVSMKSKDLNNVFSRIIWAA  588 (670)
Q Consensus       561 --~~~~~~~~~vSA~~g~v~~l~~~l~~~~  588 (670)
                        .+++. ++++||++.|++++|+.+++.+
T Consensus       167 ~~~~~~~-~~e~Sa~~~~v~~~f~~l~~~l  195 (196)
T 3llu_A          167 LEKLHLS-FYLTSIYDHSIFEAFSKVVQKL  195 (196)
T ss_dssp             CTTSCEE-EEEECTTSTHHHHHHHHHHHHT
T ss_pred             hhcCCcc-eEEEEechhhHHHHHHHHHHHh
Confidence              44554 9999999978999999998864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.83  E-value=6.4e-20  Score=175.75  Aligned_cols=162  Identities=20%  Similarity=0.349  Sum_probs=137.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...++|+|+|++|||||||+++|.+..+...+.+|++.++....+.+.|....+.+||++|.+++..+  ...+++.+++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~  104 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI--TSAYYRGAVG  104 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC--CHHHHTTCCE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh--hHHHhhcCCE
Confidence            45799999999999999999999999988888888888777777888865667778999998877776  6778889999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|+|+++..+++.+..|+..+......   +.|+++|+||+|+.+.. .....++.++...++. ++++||+++ |++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld~Sald~~~v~  180 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNVE  180 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999998898888888877654322   58999999999997633 3366788888888875 899999999 999


Q ss_pred             HHHHHHHHHH
Q 005908          579 NVFSRIIWAA  588 (670)
Q Consensus       579 ~l~~~l~~~~  588 (670)
                      ++|+.+.+.+
T Consensus       181 ~l~~~l~~~i  190 (191)
T 1oix_A          181 AAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.83  E-value=8.4e-20  Score=176.13  Aligned_cols=161  Identities=20%  Similarity=0.253  Sum_probs=126.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+|+|++|||||||+++|++..+.....++.+...  ..+.+.+..+.+.+|||+|++.+......+++.++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            468999999999999999999999987665433333222  233444556788999999999888888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |+|+++..+++.+.. |+..+... ..+.|+++|+||+|+...+.+ .. +....++...+  ..++++||+++.|++++
T Consensus        84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~-~~a~~l~~~~~--~~~~d~Sal~~~~i~~l  158 (199)
T 2f9l_A           84 VYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV-PT-DEARAFAEKNN--LSFIETSALDSTNVEEA  158 (199)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccccCc-CH-HHHHHHHHHcC--CeEEEEeCCCCCCHHHH
Confidence            999999999988774 87777654 347899999999999765544 22 33556666665  36999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+.+.+.+.
T Consensus       159 ~~~l~~~~~  167 (199)
T 2f9l_A          159 FKNILTEIY  167 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.83  E-value=5e-21  Score=194.69  Aligned_cols=158  Identities=13%  Similarity=0.137  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh---hhHHHhccCCEEE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---KLNEELKRADAVV   87 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~ii   87 (670)
                      ||+++|+.|||||||++++.++.+...   ..++.+.....  + ...++++||||+|+++|..   .+..++++++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I   77 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV   77 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence            799999999999999999887654332   11222221111  2 2458899999999999864   4689999999999


Q ss_pred             EEEECCChhhHHHHHHHH---HHHHHhcCCCCCEEEEEeCCCCCCCCCc-----cchhhhhhHHHHHh--ccCCeEEEeC
Q 005908           88 LTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQQF--REIETCVECS  157 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~---~~~l~~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~S  157 (670)
                      +|||++++ .++... .|   +..++...+++|+++||||+|+..+...     ....+..+.+++..  +.-.+|++||
T Consensus        78 lV~Ditd~-~~~~~~-~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS  155 (331)
T 3r7w_B           78 YVIDSQDE-YINAIT-NLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS  155 (331)
T ss_dssp             EECCCSSC-TTHHHH-HHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred             EEEECCch-HHHHHH-HHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence            99999998 333322 34   4444555679999999999999764210     01122223333320  0113799999


Q ss_pred             cccCCCchHHHHHHHHHHcC
Q 005908          158 ATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~  177 (670)
                      |++ .||.++|..+++.+.+
T Consensus       156 Akd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          156 IFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             SSS-SHHHHHHHHHHTTSST
T ss_pred             cCC-CcHHHHHHHHHHHHHh
Confidence            998 5899999999887664

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.83  E-value=3.7e-20  Score=192.57  Aligned_cols=157  Identities=21%  Similarity=0.242  Sum_probs=119.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      +..+||+|+|.+|||||||+++|.++.+.... +|++.  ....++.  ....+.+||++|++.+..+  ...+++.+|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~--~~~~~~~--~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~  235 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF--NVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQG  235 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTE--EEEEEEE--TTEEEEEEECC-----CCS--HHHHHTTEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccce--EEEEEec--CcEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence            46689999999999999999999998865443 44443  2333443  4577889999999999888  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~  573 (670)
                      +|+|||++++.+|..+..++..+.......  ++|+++|+||+|+.+...    .+++...++..       +++++||+
T Consensus       236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSAk  309 (329)
T 3o47_A          236 LIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCAT  309 (329)
T ss_dssp             EEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBTT
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEECC
Confidence            999999999999999998888776544322  699999999999987432    23344444332       48999999


Q ss_pred             cC-ChHHHHHHHHHHHhC
Q 005908          574 SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~  590 (670)
                      +| |++++|+.|.+.+.+
T Consensus       310 ~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          310 SGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             TTBTHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            99 999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.83  E-value=9.9e-20  Score=186.52  Aligned_cols=158  Identities=22%  Similarity=0.170  Sum_probs=114.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~   79 (670)
                      .+..+|+|+|++|||||||+|+|++.++..  ..+++... .+...+...+..+.+|||||+.+        +......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~-~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK-RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeE-EEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            456789999999999999999999988653  23332221 12222345678999999999876        34455678


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++.+|++++|+|++++.+...  ..+.+.++...+++|+++|+||+|+.....     + +......+....+++++||+
T Consensus        84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~-~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----E-AMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----H-HHHHHHHTSTTSEEEECCTT
T ss_pred             HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----H-HHHHHHHhcCcCcEEEEeCC
Confidence            999999999999998765543  234567766556799999999999875322     0 12223333223479999999


Q ss_pred             cCCCchHHHHHHHHHHc
Q 005908          160 TMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~  176 (670)
                      +|.|++++++.+.+.+.
T Consensus       156 ~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          156 DERQVAELKADLLALMP  172 (301)
T ss_dssp             CHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhcc
Confidence            99999999999987654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.82  E-value=1.7e-20  Score=179.25  Aligned_cols=156  Identities=18%  Similarity=0.213  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCC-----------CccchhhhHHHh
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSS-----------SLENKGKLNEEL   80 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~   80 (670)
                      +||+++|++|||||||+++|++..+... .+++... .....+  .  .+.+|||||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6999999999999999999999887655 3332211 111111  1  689999999           455566666777


Q ss_pred             cc-CCEEEEEEECCChhhHHHHHHHHHHH---------HHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc
Q 005908           81 KR-ADAVVLTYACNQQSTLSRLSSYWLPE---------LRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (670)
Q Consensus        81 ~~-ad~ii~v~d~~~~~s~~~~~~~~~~~---------l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (670)
                      +. ++++++|+++.+..++..+.+.|...         ++. ...++|+++|+||+|+....     .+..+.+++.++.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~  151 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTC
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhh
Confidence            77 78777777777788888775556542         111 12489999999999997642     3445667777763


Q ss_pred             C-----CeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          150 I-----ETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       150 ~-----~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      .     .++++|||++|.||+++|+++.+.+...
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            1     1479999999999999999999887543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.82  E-value=1.3e-19  Score=173.53  Aligned_cols=161  Identities=20%  Similarity=0.241  Sum_probs=126.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...++|+|+|++|||||||+++|++..+.....++.+...  ..+.+++..+.+.+|||+|++++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            3468999999999999999999999887665444333222  23344455667888999999998888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|+|+++..+++++. .|...++.. ..+.|+++|+||+|+.+.+.. . .+....++.+.+  ..++++||+++.|+++
T Consensus       107 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~-~~~a~~l~~~~~--~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          107 LVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-P-TDEARAFAEKNG--LSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence            999999999998876 487777653 347899999999999765444 2 234566666655  3699999999999999


Q ss_pred             HHHHHHHHH
Q 005908          167 VFYYAQKAV  175 (670)
Q Consensus       167 l~~~i~~~~  175 (670)
                      +|+.+.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.82  E-value=4.9e-20  Score=199.73  Aligned_cols=203  Identities=16%  Similarity=0.141  Sum_probs=123.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH--------HH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~   79 (670)
                      +..++|+|+|.+|||||||+|+|++..  ++...+++.... ....+..+++.+.+|||||+.++...++        .+
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~-~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY-IEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEE-EEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            356899999999999999999999886  344455432221 2334445678999999999977654433        46


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++.+|++|+|+|++++.+++.+. .+...++... ++|+++|+||+|+...... .    .+.+... + ..++++|||+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~-~----~~~l~~~-~-~~~~i~vSAk  380 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELT-EIRELKAAHP-AAKFLTVANKLDRAANADA-L----IRAIADG-T-GTEVIGISAL  380 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHH-HHHHHHHHCT-TSEEEEEEECTTSCTTTHH-H----HHHHHHH-H-TSCEEECBTT
T ss_pred             cccCCEEEEEEECCCCcchhhhH-HHHHHHHhcC-CCCEEEEEECcCCCCccch-h----HHHHHhc-C-CCceEEEEEC
Confidence            88999999999999998875433 2444444433 7999999999999765433 1    1223332 1 1479999999


Q ss_pred             cCCCchHHHHHHHHHHc-CCCC----CCCc-cccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHh
Q 005908          160 TMIQVPDVFYYAQKAVL-HPTA----PLFD-HDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQ  222 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~-~~~~----~~~~-~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q  222 (670)
                      +|.||+++++.+.+.+. ....    +... .+.......+..+|++.....+......+..++++...
T Consensus       381 tg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~  449 (476)
T 3gee_A          381 NGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAAL  449 (476)
T ss_dssp             TTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999886 3321    1222 22223456677777776665555555566666665543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.82  E-value=2.7e-20  Score=186.33  Aligned_cols=150  Identities=13%  Similarity=0.155  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh----------hhHHHh-
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEEL-   80 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~-   80 (670)
                      .+|+++|++|||||||+|+|++..+. .+.|++.. ......+..++..+.+|||||+..+..          ....++ 
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv-~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTV-EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSS-EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceE-EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            48999999999999999999998743 33555332 223334445567899999999987653          344566 


Q ss_pred             -ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        81 -~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                       +.+|++|+|+|+++.++...    +...+...  ++|+++|+||+|+...+..   ......+.+.++  .+++++||+
T Consensus        81 ~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~vi~~SA~  149 (256)
T 3iby_A           81 DLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHRGI---SIDTEKLESLLG--CSVIPIQAH  149 (256)
T ss_dssp             HSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHTTC---EECHHHHHHHHC--SCEEECBGG
T ss_pred             hCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcCCc---HHHHHHHHHHcC--CCEEEEECC
Confidence             89999999999998655443    55555555  8999999999998765433   223456777776  389999999


Q ss_pred             cCCCchHHHHHHHHH
Q 005908          160 TMIQVPDVFYYAQKA  174 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~  174 (670)
                      +|.||+++++.+.+.
T Consensus       150 ~g~gi~el~~~i~~~  164 (256)
T 3iby_A          150 KNIGIPALQQSLLHC  164 (256)
T ss_dssp             GTBSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999999887

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.82  E-value=9.5e-20  Score=168.93  Aligned_cols=150  Identities=23%  Similarity=0.297  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhh-------HhhhhchHhhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILSNKEAL  495 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~~~~~~  495 (670)
                      +||+++|++|||||||+|+|.+..+..... ++++.+.....+...+  ..+.+||++|...       +...  ...++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~   77 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEK--VDRAL   77 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHH--HHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHH--HHHHH
Confidence            689999999999999999999987653322 3333344445555553  4678899999865       2233  56678


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      +.+|++++|+|++++.+... ..+...+...      +.|+++|+||+|+.+.+   +..++++ .+++.+++++||++|
T Consensus        78 ~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~------~~p~ilv~nK~Dl~~~~---~~~~~~~-~~~~~~~~~~Sa~~~  146 (161)
T 2dyk_A           78 EDAEVVLFAVDGRAELTQAD-YEVAEYLRRK------GKPVILVATKVDDPKHE---LYLGPLY-GLGFGDPIPTSSEHA  146 (161)
T ss_dssp             TTCSEEEEEEESSSCCCHHH-HHHHHHHHHH------TCCEEEEEECCCSGGGG---GGCGGGG-GGSSCSCEECBTTTT
T ss_pred             HhCCEEEEEEECCCcccHhH-HHHHHHHHhc------CCCEEEEEECcccccch---HhHHHHH-hCCCCCeEEEecccC
Confidence            99999999999998755432 2222333332      69999999999998642   3344455 577757999999999


Q ss_pred             -ChHHHHHHHHHHH
Q 005908          576 -DLNNVFSRIIWAA  588 (670)
Q Consensus       576 -~v~~l~~~l~~~~  588 (670)
                       |++++|+++.+.+
T Consensus       147 ~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          147 RGLEELLEAIWERL  160 (161)
T ss_dssp             BSHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHhC
Confidence             9999999998864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.82  E-value=1.7e-19  Score=173.06  Aligned_cols=157  Identities=18%  Similarity=0.205  Sum_probs=108.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhhhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS  490 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~~~  490 (670)
                      ...++|+|+|.+|||||||+|+|++..+.....++.+..........+ +  .+.+||++|          ++.+..+  
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~--   95 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRM--   95 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHH--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHH--
Confidence            467999999999999999999999987554444444433333444444 2  477899999          7777665  


Q ss_pred             hHhhcccc---cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC---
Q 005908          491 NKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI---  564 (670)
Q Consensus       491 ~~~~~~~a---d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~---  564 (670)
                      ...+++.+   |++++|+|++++.++.... +...+...      +.|+++|+||+|+.+........+++.+.+..   
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence            55666666   9999999999988876543 23333332      69999999999998755444444555554432   


Q ss_pred             CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          565 EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       565 ~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      .+++++||++| |++++|++|.+.+.
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHhc
Confidence            36999999999 99999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.82  E-value=1.2e-19  Score=186.97  Aligned_cols=161  Identities=17%  Similarity=0.183  Sum_probs=123.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCceEEEEEecCChhhH-----hhhhchHh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKILSNKE  493 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-----~~~~~~~~  493 (670)
                      ..+||+++|++|||||||+|+|+++.....   +.+|.+..+  ..+.+. +...+.+||++|++.+     ..+  +..
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~--~~~   76 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFL-GNMTLNLWDCGGQDVFMENYFTKQ--KDH   76 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEET-TTEEEEEEEECCSHHHHHHHHTTT--HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeC-CceEEEEEECCCcHHHhhhhhhhH--HHH
Confidence            358999999999999999999998744432   224444333  344445 4678899999999887     455  778


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--Cc-----ccHHHHHHHHHHhCC--
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--YT-----MAVQDSARVTQELGI--  564 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~--~~-----~~~~~~~~~~~~~~~--  564 (670)
                      +++++|++|+|||++++.+|+.+..|...+....... .++|+++|+||+|+.+  .+     ...++++++++.+++  
T Consensus        77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~  155 (307)
T 3r7w_A           77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN  155 (307)
T ss_dssp             HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            8899999999999999999999877755443322100 1699999999999987  33     234778889999885  


Q ss_pred             CCcEEeecccCChHHHHHHHHHHH
Q 005908          565 EPPIPVSMKSKDLNNVFSRIIWAA  588 (670)
Q Consensus       565 ~~~~~vSA~~g~v~~l~~~l~~~~  588 (670)
                      .+++++||+++|+.++|..+++.+
T Consensus       156 ~~~~~tSa~~~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          156 LIGFPTSIWDESLYKAWSQIVCSL  179 (307)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEeeecCChHHHHHHHHHHHH
Confidence            469999999988899998888754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.81  E-value=6.1e-20  Score=175.16  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=121.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh------hhhchHhhc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL  495 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~  495 (670)
                      ..++|+++|++|||||||+|+|++..+.....++++.+.....+...  ...+.+||++|++.+.      .+  ...++
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~   81 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDYI   81 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHH--HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHH--HHHHH
Confidence            56899999999999999999999976654444555555555556655  3678889999987653      23  34455


Q ss_pred             c--cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908          496 A--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       496 ~--~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                      +  .+|++++|+|+++   ++....|+..+...      +.|+++|+||+|+..........+++++.++++ ++++||+
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~  151 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAA  151 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGG
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHhc------CCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEEec
Confidence            3  5999999999875   56667777777653      699999999999876443445678888888875 9999999


Q ss_pred             cC-ChHHHHHHHHHHHhCCC
Q 005908          574 SK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~~~  592 (670)
                      +| |++++|+.+.+.+....
T Consensus       152 ~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          152 KKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GTBSHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHhcc
Confidence            99 99999999999987543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.81  E-value=5.7e-20  Score=186.21  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=115.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh----------hhHHH
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEE   79 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~   79 (670)
                      +.++|+++|++|||||||+|+|++..+... .+++. .......+...+..+.+|||||+..+..          ....+
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSS-SEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCee-EEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            579999999999999999999999874322 55533 2223334445567899999999887652          12233


Q ss_pred             --hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        80 --~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                        .+.+|++|+|+|+++.+...    +|...+...  ++|+++|+||+|+...+..   ......+.+.++  .+++++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~~i~~S  149 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIEIDALSARLG--CPVIPLV  149 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTTE---EECHHHHHHHHT--SCEEECC
T ss_pred             HhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhhH---HHHHHHHHHhcC--CCEEEEE
Confidence              37999999999998865443    355666665  8999999999998654433   223466777776  3799999


Q ss_pred             cccCCCchHHHHHHHHHHcCC
Q 005908          158 ATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~~  178 (670)
                      |++|.||+++++.+.+.+...
T Consensus       150 A~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          150 STRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             CGGGHHHHHHHHHHHTCCCCC
T ss_pred             cCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999998766543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.81  E-value=9.9e-20  Score=182.57  Aligned_cols=159  Identities=18%  Similarity=0.156  Sum_probs=119.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhh----chHhhc-
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL-  495 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~-  495 (670)
                      .+.++|+++|.+|||||||+|+|++..+.....++++.......+...  ...+.+||++|...+....    -...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            356899999999999999999999987654434444444444444443  4678899999986554310    023444 


Q ss_pred             -ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       496 -~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                       ..+|++++|+|+++.++   ...|...+...      +.|+++|+||+|+...+......+++++.++++ ++++||++
T Consensus        81 ~~~~d~ii~V~D~t~~~~---~~~~~~~l~~~------~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~SA~~  150 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQ---SLYLLLEILEM------EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFTSSVT  150 (258)
T ss_dssp             HSCCSEEEEEEETTSCHH---HHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEECCTTT
T ss_pred             hcCCCEEEEEeCCCchhh---HHHHHHHHHhc------CCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEEEeeC
Confidence             58999999999998644   33466666544      699999999999876544445578899999976 99999999


Q ss_pred             C-ChHHHHHHHHHHHhCC
Q 005908          575 K-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~~  591 (670)
                      | |++++|+.+.+.+..+
T Consensus       151 g~gi~el~~~i~~~~~~~  168 (258)
T 3a1s_A          151 GEGLEELKEKIVEYAQKN  168 (258)
T ss_dssp             CTTHHHHHHHHHHHHHSS
T ss_pred             CcCHHHHHHHHHHHhhcc
Confidence            9 9999999999987643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.81  E-value=1.6e-19  Score=195.70  Aligned_cols=187  Identities=15%  Similarity=0.074  Sum_probs=114.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhh------hchHh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKE  493 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~------~~~~~  493 (670)
                      +..++|+|+|.+|||||||+|+|++.++..+.+ ++++.+.....+..+|  ..+.+|||+|...+...      .++..
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            456899999999999999999999987654443 4344344445566653  56888999998655432      23466


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                      +++.+|++++|+|++++.+++....+...+....     ++|+++|+||+|+.+....  ..+++.+. +..+++++||+
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~~~--~~~~l~~~-~~~~~i~vSAk  380 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADA--LIRAIADG-TGTEVIGISAL  380 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTTHH--HHHHHHHH-HTSCEEECBTT
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCccch--hHHHHHhc-CCCceEEEEEC
Confidence            8899999999999999988754333333222221     5899999999999875432  22344444 33569999999


Q ss_pred             cC-ChHHHHHHHHHHHh-CCCCCCCCCcccccHHHHHHHhhhhhhhhc
Q 005908          574 SK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRKRYRHLVNSSLVFVS  619 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (670)
                      +| |+++++++|.+.+. .+... + ......+.+|.++++++..++.
T Consensus       381 tg~GI~eL~~~i~~~~~~~~~~~-~-~~~~~~~~R~~~~l~~a~~~L~  426 (476)
T 3gee_A          381 NGDGIDTLKQHMGDLVKNLDKLH-E-ASVLVTSLRHYEALRNASDALQ  426 (476)
T ss_dssp             TTBSHHHHHHHHTHHHHSSCCCC-T-TSCCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhccCCC-C-cccccccHHHHHHHHHHHHHHH
Confidence            99 99999999999987 54322 1 2224456677777777666544

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.81  E-value=2.7e-19  Score=176.48  Aligned_cols=161  Identities=13%  Similarity=0.056  Sum_probs=113.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh------hh----Hhhhhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EG----VKKILS  490 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~------~~----~~~~~~  490 (670)
                      ...++|+|+|.+|||||||+|+|++..+.....+.++.......+...  ...+.+||++|.      +.    +..+  
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~--  102 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTI--  102 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHH--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHH--
Confidence            467999999999999999999999988763333333333444444443  367888999998      32    2222  


Q ss_pred             hHhhcccccEEEEEEECCCcccHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-H---HHHHHHHHHhC-
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-V---QDSARVTQELG-  563 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~---~~~~~~~~~~~-  563 (670)
                       ..++..+|++|+|||++++.+|.  ....|+..+.....    +.|+++|+||+|+.+.+.. .   ...++++...+ 
T Consensus       103 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          103 -TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS----NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             -HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred             -HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc----CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence             34467889999999999987764  23456666554322    5899999999999875443 2   24566666665 


Q ss_pred             CCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          564 IEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       564 ~~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ..+++++||++| |++++|++|.+.+..
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence            124999999999 999999999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.81  E-value=6.1e-20  Score=175.35  Aligned_cols=155  Identities=14%  Similarity=0.122  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC-----------hhhHhhhhchH
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILSNK  492 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g-----------~~~~~~~~~~~  492 (670)
                      +||+|+|.+|||||||+|+|++..+...+.++++....  .+...    .+.+||++|           ++.+..+  ..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~   73 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDE--IV   73 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHH--HH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHH--HH
Confidence            68999999999999999999999877665555443222  22222    466789998           6667666  56


Q ss_pred             hhccc-ccEEEEEEECCCcccHHHH-HHHHHH--------HHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh
Q 005908          493 EALAS-CDVTIFVYDSSDEYSWKRT-KELLVE--------VARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL  562 (670)
Q Consensus       493 ~~~~~-ad~vllv~D~s~~~s~~~~-~~~~~~--------i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~  562 (670)
                      .+++. ++++++|+++.+..++..+ ..|...        +.......  +.|+++|+||+|+....  .+..+++++.+
T Consensus        74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~~~~~~~~~~~  149 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNV--QEVINFLAEKF  149 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCH--HHHHHHHHHHH
T ss_pred             HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc--CCceEEEeehHhccCcH--HHHHHHHHHHh
Confidence            66666 7766666666667777766 455432        22211111  69999999999998754  56788889999


Q ss_pred             CCC------CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          563 GIE------PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       563 ~~~------~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      +.+      +++++||++| |++++|+++.+.+..
T Consensus       150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            874      3699999999 999999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.81  E-value=2e-19  Score=182.32  Aligned_cols=158  Identities=15%  Similarity=0.072  Sum_probs=116.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh------hhHHHh--c
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K   81 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~   81 (670)
                      +.++|+++|++|||||||+|+|++..+... .+++. .......+...+..+.+|||||+..+..      ....++  .
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVT-VEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSS-CEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeE-EEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            568999999999999999999999876333 44432 2223334445667899999999987665      444555  6


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      .+|++++|+|+++.+.   .. +|...+.... .+|+++|+||+|+...+.. ..  ....+.+.++  .+++++||++|
T Consensus        81 ~~d~vi~v~D~~~~~~---~~-~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~-~~--~~~~l~~~lg--~~~~~~Sa~~g  150 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NL-FLTLELFEME-VKNIILVLNKFDLLKKKGA-KI--DIKKMRKELG--VPVIPTNAKKG  150 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HH-HHHHHHHHTT-CCSEEEEEECHHHHHHHTC-CC--CHHHHHHHHS--SCEEECBGGGT
T ss_pred             CCcEEEEEecCCcchh---hH-HHHHHHHhcC-CCCEEEEEEChhcCccccc-HH--HHHHHHHHcC--CcEEEEEeCCC
Confidence            8999999999888642   22 3555555541 3999999999998654333 22  2566777777  37999999999


Q ss_pred             CCchHHHHHHHHHHcCCC
Q 005908          162 IQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~  179 (670)
                      .|++++++.+.+.+....
T Consensus       151 ~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          151 EGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             BTHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999999876443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.81  E-value=7.6e-20  Score=172.10  Aligned_cols=155  Identities=17%  Similarity=0.204  Sum_probs=111.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhH----hh--hhchHhh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KK--ILSNKEA  494 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~--~~~~~~~  494 (670)
                      ..+||+|+|++|||||||+|+|.+..+..... ++++.++....+...|  ..+.+||++|.+.+    +.  +.+...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999987543322 3444445556666663  35778999997432    11  2123456


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      ++.+|++++|+|++++.++. ...|+..+......   ++|+++|+||+|+.+....      +++..+. +++++||++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~------~~~~~~~-~~~~~SA~~  149 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPA---KLPITVVRNKADITGETLG------MSEVNGH-ALIRLSART  149 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCT---TCCEEEEEECHHHHCCCCE------EEEETTE-EEEECCTTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhccc---CCCEEEEEECccCCcchhh------hhhccCC-ceEEEeCCC
Confidence            89999999999999998876 45677777665432   5999999999998653211      1111233 589999999


Q ss_pred             C-ChHHHHHHHHHHHh
Q 005908          575 K-DLNNVFSRIIWAAE  589 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~  589 (670)
                      | |++++|+.|.+.+.
T Consensus       150 g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          150 GEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             CTTHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9 99999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.80  E-value=9e-20  Score=184.77  Aligned_cols=157  Identities=15%  Similarity=0.155  Sum_probs=117.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh----------hhchH
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNK  492 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----------~~~~~  492 (670)
                      .++|+++|.+|||||||+|+|++..+.....++++.+.....+...+  ..+.+||++|...+..          +.+..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            48999999999999999999999876544445555556666666653  4567799999765442          21111


Q ss_pred             hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      ...+.+|++++|+|+++.++   ...+...+...      ++|+++|+||+|+.+.+......+.+++.++++ ++++||
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~---~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~SA  150 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLER---NLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLVS  150 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHH---HHHHHHHHHHH------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECCC
T ss_pred             HhhcCCCEEEEEecCCChHH---HHHHHHHHHhc------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEEc
Confidence            22379999999999998544   34444445444      699999999999876554445567888889976 999999


Q ss_pred             ccC-ChHHHHHHHHHHHhCC
Q 005908          573 KSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ++| |++++++.+.+.+...
T Consensus       151 ~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          151 TRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHhcC
Confidence            999 9999999998877543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.80  E-value=6.6e-20  Score=183.49  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh----------hhchHh
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNKE  493 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----------~~~~~~  493 (670)
                      .+|+++|.+|||||||+|+|++........++++.+.....+...|  ..+.+||++|...+..          +  ...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i--~~~   77 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQI--AAQ   77 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHH--HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHH--HHH
Confidence            4899999999999999999999875544446555555556666653  4778899999755432          3  445


Q ss_pred             hc--ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908          494 AL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       494 ~~--~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      ++  ..+|++++|+|+++.+++..   +...+...      ++|+++|+||+|+.+.+........+++.++++ ++++|
T Consensus        78 ~~~~~~~d~vi~VvDas~~~~~~~---l~~~l~~~------~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S  147 (256)
T 3iby_A           78 SVIDLEYDCIINVIDACHLERHLY---LTSQLFEL------GKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ  147 (256)
T ss_dssp             HHHHSCCSEEEEEEEGGGHHHHHH---HHHHHTTS------CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB
T ss_pred             HHhhCCCCEEEEEeeCCCchhHHH---HHHHHHHc------CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE
Confidence            56  89999999999998644433   33333332      699999999999976554555567788889975 99999


Q ss_pred             cccC-ChHHHHHHHHHH
Q 005908          572 MKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~  587 (670)
                      |++| |++++++.+.+.
T Consensus       148 A~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          148 AHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGGTBSHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHhh
Confidence            9999 999999999987

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.80  E-value=9.4e-19  Score=167.70  Aligned_cols=157  Identities=16%  Similarity=0.158  Sum_probs=110.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhhh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKIL  489 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~~  489 (670)
                      ....+||+|+|.+|||||||+|+|++..+.... ++.+........... .  .+.+||++|          ++.+..+ 
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~--~~~i~Dt~G~~~~~~~~~~~~~~~~~-   94 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVN-S--KYYFVDLPGYGYAKVSKKERMLWKRL-   94 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEET-T--TEEEEECCCBSSSCCCHHHHHHHHHH-
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEEC-C--cEEEEECCCCccccCChhhHHHHHHH-
Confidence            345689999999999999999999998854433 333333333333333 2  355799999          6666665 


Q ss_pred             chHhhcccc---cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC
Q 005908          490 SNKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG  563 (670)
Q Consensus       490 ~~~~~~~~a---d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~  563 (670)
                       ...+++.+   |++++|+|++++.+.... .+...+...      +.|+++|+||+|+.+....   .+...+++...+
T Consensus        95 -~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           95 -VEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             -HHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             -HHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence             45555554   999999999887554322 223333333      6999999999999864433   344555555555


Q ss_pred             CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          564 IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       564 ~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ..+++++||++| |++++|++|.+.+.
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            456999999999 99999999998875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.80  E-value=1.3e-19  Score=195.51  Aligned_cols=198  Identities=18%  Similarity=0.213  Sum_probs=130.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH--------HHh
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN--------EEL   80 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~   80 (670)
                      ..++|+|+|++|||||||+|+|++..+  ....+++.... ....+..++..+.+|||||+.++....+        .++
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV-VESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH-HHHEEEETTEEEEECC--------------------CCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE-EEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            568999999999999999999998753  44444432221 2223445678899999999876544333        367


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      +.+|++|+|+|++++.+....  .|++.+.    ++|+++|+||+|+...... .   ...    .+....+++++||++
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~-~---~~~----~~~~~~~~i~iSAkt  367 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLI-T---SLE----YPENITQIVHTAAAQ  367 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGS-T---TCC----CCTTCCCEEEEBTTT
T ss_pred             hcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhh-H---HHH----HhccCCcEEEEECCC
Confidence            889999999999988776653  3666654    4799999999999765443 1   111    111224799999999


Q ss_pred             CCCchHHHHHHHHHHcCCCC-----CCC-ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhh
Q 005908          161 MIQVPDVFYYAQKAVLHPTA-----PLF-DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV  223 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~~-----~~~-~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~  223 (670)
                      |.||+++++.+.+.+.....     +.. ..+......++..+|.+.....+......+..++++....
T Consensus       368 g~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~  436 (462)
T 3geh_A          368 KQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQ  436 (462)
T ss_dssp             TBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            99999999999998865431     111 2233345567888888877766666666777777765543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.80  E-value=2.1e-19  Score=181.22  Aligned_cols=153  Identities=16%  Similarity=0.149  Sum_probs=113.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh------hhhchHhhcc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA  496 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~  496 (670)
                      .++|+++|++|||||||+|+|++........+.++.....  ..+.+ ...+.+||++|+..+.      .+  ...++.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v--~~~~~~   77 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKV--ARDYLL   77 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHH--HHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHH--HHHHHh
Confidence            5899999999999999999999976433333333322222  22332 4467789999986654      23  344554


Q ss_pred             --cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       497 --~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                        .+|++++|+|+++.++   ...|..++...      ++|+++|+||+|+..........+.+++.++++ ++++||++
T Consensus        78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~SA~~  147 (272)
T 3b1v_A           78 SQRADSILNVVDATNLER---NLYLTTQLIET------GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVP-VVATSALK  147 (272)
T ss_dssp             TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT------CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBTTT
T ss_pred             cCCCCEEEEEecCCchHh---HHHHHHHHHhc------CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCC-EEEEEccC
Confidence              6999999999988643   44566666553      799999999999876444445678888899986 99999999


Q ss_pred             C-ChHHHHHHHHHHHhC
Q 005908          575 K-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~  590 (670)
                      | |++++|+.+.+.+..
T Consensus       148 g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          148 QTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             TBSHHHHHHHHHHSCTT
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            9 999999999987643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.79  E-value=8.1e-19  Score=179.74  Aligned_cols=155  Identities=21%  Similarity=0.264  Sum_probs=111.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCceEEEEEecCChhh--------Hhhhhch
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------VKKILSN  491 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~-t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~--------~~~~~~~  491 (670)
                      +..+|+|+|+||||||||+|+|++..+..++. + ||+.... ..+..  +...+.+|||+|...        +...  .
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~-~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~--~   80 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLR-GILTE--GRRQIVFVDTPGLHKPMDALGEFMDQE--V   80 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEE-EEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHH--H
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEE-EEEEe--CCcEEEEecCccccchhhHHHHHHHHH--H
Confidence            34679999999999999999999998876544 3 4443222 22322  456788999999754        3333  5


Q ss_pred             HhhcccccEEEEEEECCCcccHHHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH-hCCCCcEE
Q 005908          492 KEALASCDVTIFVYDSSDEYSWKRTKELL-VEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-LGIEPPIP  569 (670)
Q Consensus       492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~  569 (670)
                      ..+++.+|++++|+|++++.+..  ..|+ ..+.....    +.|+++|+||+|+......   ..+..+. .++.++++
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~----~~p~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~  151 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPE--DELVARALKPLVG----KVPILLVGNKLDAAKYPEE---AMKAYHELLPEAEPRM  151 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTT----TSCEEEEEECGGGCSSHHH---HHHHHHHTSTTSEEEE
T ss_pred             HHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcC----CCCEEEEEECcccCCchHH---HHHHHHHhcCcCcEEE
Confidence            67889999999999999886644  3343 44444321    5899999999999864320   2233333 34446899


Q ss_pred             eecccC-ChHHHHHHHHHHHhC
Q 005908          570 VSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      +||++| |++++++.+.+.+..
T Consensus       152 iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          152 LSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EeCCCCCCHHHHHHHHHHhccc
Confidence            999999 999999999987753

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.79  E-value=2.7e-19  Score=193.98  Aligned_cols=197  Identities=16%  Similarity=0.189  Sum_probs=132.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc-cchh--------hhHHH
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-ENKG--------KLNEE   79 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~   79 (670)
                      ..++|+|+|.||||||||+|+|++.+  ++.+++++.... ....+..++..+.+|||||+. ++..        ....+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~-~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV-ISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCS-CCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeee-EEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            35899999999999999999999886  345455533222 222344457889999999987 5432        24578


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      ++.+|++|+|+|++++.++++..  +++.+    .++|+++|+||+|+...  . .. +.+..+   .+...++++|||+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--~-~~-~~~~~~---~~~~~~~i~iSAk  387 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--I-NE-EEIKNK---LGTDRHMVKISAL  387 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--C-CH-HHHHHH---HTCSTTEEEEEGG
T ss_pred             hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--c-CH-HHHHHH---hcCCCcEEEEECC
Confidence            89999999999999988876643  44444    37899999999999653  2 22 222222   2211369999999


Q ss_pred             cCCCchHHHHHHHHHHcCC----CCCCC-ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 005908          160 TMIQVPDVFYYAQKAVLHP----TAPLF-DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEF  221 (670)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~----~~~~~-~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~  221 (670)
                      +|.||+++++.+.+.+...    ..+.. ..+......++..+|.+............+..++++..
T Consensus       388 tg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a  454 (482)
T 1xzp_A          388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA  454 (482)
T ss_dssp             GTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            9999999999999875421    12222 23333455677777776655444443334444444433

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.79  E-value=8.3e-19  Score=172.22  Aligned_cols=161  Identities=13%  Similarity=0.072  Sum_probs=109.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC-CCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPF-SENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKI  488 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~  488 (670)
                      ...++|+|+|.+|||||||+|+|++..+ ..... +.++.......+... ....+.+||++|          ++.+..+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPA-AEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT-TSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCC-CCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4568999999999999999999999873 23222 222222333333322 446678899999          4444444


Q ss_pred             hchHhhccc---ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH---HHHHHHh
Q 005908          489 LSNKEALAS---CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS---ARVTQEL  562 (670)
Q Consensus       489 ~~~~~~~~~---ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~~~  562 (670)
                        ...+++.   +|++++|+|++++.+ .....++..+...      ++|+++|+||+|+..........   .+....+
T Consensus       106 --~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          106 --LSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPT------GKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             --HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGG------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence              3444444   889999999998755 3344555555442      69999999999998744332222   2222332


Q ss_pred             ------CCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          563 ------GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       563 ------~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                            ...+++++||++| |++++++.|.+.+..+
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence                  3346999999999 9999999999988643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.79  E-value=2.1e-19  Score=194.57  Aligned_cols=162  Identities=15%  Similarity=0.142  Sum_probs=117.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCC----------ccchhhhH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS----------LENKGKLN   77 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~   77 (670)
                      ...+||+++|++|||||||+|+|++..+  ....+++.... ....+..++..+.+|||||+          +.+.....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee-eEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            3568999999999999999999999875  33344432221 22334455678999999997          33333322


Q ss_pred             -HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEE
Q 005908           78 -EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV  154 (670)
Q Consensus        78 -~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (670)
                       .+++.+|++|+|+|++++.++++..  |...+...  ++|+++|+||+|+.+.+.. ..++..+.+...+..  ..+++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCCCTT-HHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCcchH-HHHHHHHHHHHhcccCCCCCEE
Confidence             5889999999999999998888763  88877765  8999999999999876554 333444444444432  23799


Q ss_pred             EeCcccCCCchHHHHHHHHHHcC
Q 005908          155 ECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      ++||++|.||+++|+.+.+.+..
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999987753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=6.5e-19  Score=172.39  Aligned_cols=151  Identities=18%  Similarity=0.279  Sum_probs=102.0

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc---
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR---   82 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~---   82 (670)
                      +....+.++|+|+|++|||||||+++|++..+....+.......  ..+  ....+.+|||||++.+...+..+++.   
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--ADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE--TTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE--EEe--eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            34456789999999999999999999999886543222111111  112  56789999999999998888888887   


Q ss_pred             -CCEEEEEEECC-ChhhHHHHHHHHHHHH-Hh----cCCCCCEEEEEeCCCCCCCCCccch----hhhhhHHHHHhccCC
Q 005908           83 -ADAVVLTYACN-QQSTLSRLSSYWLPEL-RR----LEIKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQFREIE  151 (670)
Q Consensus        83 -ad~ii~v~d~~-~~~s~~~~~~~~~~~l-~~----~~~~~pvilv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~  151 (670)
                       +|++|+|||++ ++.++..... |+..+ ..    ...++|+++|+||+|+.....+...    .+.+..++...+  .
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~--~  158 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK--K  158 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             cCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh--c
Confidence             89999999999 8889888876 54444 32    2358999999999999876543111    233444554444  2


Q ss_pred             eEEEeCcccCCC
Q 005908          152 TCVECSATTMIQ  163 (670)
Q Consensus       152 ~~~~~SA~~~~g  163 (670)
                      +++++||++|.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            689999998875

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.77  E-value=1.9e-19  Score=183.15  Aligned_cols=154  Identities=13%  Similarity=0.128  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-hhchHhhcccccE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASCDV  500 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~---~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~  500 (670)
                      ||+++|.+|||||||++++.++.+..   ...+|++..+..  +  . ...++.+||++|+++|.. ...+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988764432   234677665542  2  3 457899999999999863 1015788999999


Q ss_pred             EEEEEECCCcccHHHHH---HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--------ccHHHHHHHHHH----hCCC
Q 005908          501 TIFVYDSSDEYSWKRTK---ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--------MAVQDSARVTQE----LGIE  565 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~---~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--------~~~~~~~~~~~~----~~~~  565 (670)
                      +|+|||++++ .++...   .|+..+....+    +.|+++|+||+|+....        ...++++++++.    +++.
T Consensus        76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~----~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~  150 (331)
T 3r7w_B           76 LVYVIDSQDE-YINAITNLAMIIEYAYKVNP----SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS  150 (331)
T ss_dssp             EEEECCCSSC-TTHHHHHHHHHHHHHHHHCT----TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred             EEEEEECCch-HHHHHHHHHHHHHHHhhcCC----CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence            9999999998 333333   33444443332    69999999999998642        224455566664    4554


Q ss_pred             CcEEeecccCChHHHHHHHHHHHh
Q 005908          566 PPIPVSMKSKDLNNVFSRIIWAAE  589 (670)
Q Consensus       566 ~~~~vSA~~g~v~~l~~~l~~~~~  589 (670)
                       +++|||++.||.++|..+++.+.
T Consensus       151 -f~eTSAkd~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          151 -FYLTSIFDHSIYEAFSRIVQKLI  173 (331)
T ss_dssp             -EECCCSSSSHHHHHHHHHHTTSS
T ss_pred             -EEEeccCCCcHHHHHHHHHHHHH
Confidence             99999997799999999987654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.77  E-value=2.2e-18  Score=174.59  Aligned_cols=158  Identities=20%  Similarity=0.202  Sum_probs=120.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHhhc-
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL-  495 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~-  495 (670)
                      .++|+++|++|||||||+|+|++..+.....++++.+.....+...+  ..+.+||++|...+..      +  ...++ 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~   78 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELI--ARNFIL   78 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHH--HHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHH--HHHhhh
Confidence            48999999999999999999999877544446666555555566553  4578899999765544      3  33444 


Q ss_pred             -ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       496 -~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                       .++|++++|+|+++.   .....+...+....     ..|+++|+||+|+.+.+........+++.++++ ++++||++
T Consensus        79 ~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~Sa~~  149 (271)
T 3k53_A           79 DGNADVIVDIVDSTCL---MRNLFLTLELFEME-----VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPTNAKK  149 (271)
T ss_dssp             TTCCSEEEEEEEGGGH---HHHHHHHHHHHHTT-----CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEECBGGG
T ss_pred             ccCCcEEEEEecCCcc---hhhHHHHHHHHhcC-----CCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEEEeCC
Confidence             789999999999885   33445555555541     299999999999876444444578888899976 99999999


Q ss_pred             C-ChHHHHHHHHHHHhCCCC
Q 005908          575 K-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~~~~  593 (670)
                      | |++++++.+.+.+.....
T Consensus       150 g~gi~~l~~~i~~~~~~~~~  169 (271)
T 3k53_A          150 GEGVEELKRMIALMAEGKVT  169 (271)
T ss_dssp             TBTHHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHhcccc
Confidence            9 999999999999875443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=1.7e-18  Score=188.52  Aligned_cols=164  Identities=15%  Similarity=0.158  Sum_probs=117.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCC----------Cccchhhh
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGKL   76 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~   76 (670)
                      ....+||+++|++|||||||+|+|++..  +....+++.... ....+..++..+.+|||||          ++.+....
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT-TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE-EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4567999999999999999999999876  233344422211 2223445567899999999          55555544


Q ss_pred             H-HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeE
Q 005908           77 N-EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (670)
Q Consensus        77 ~-~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (670)
                      . .+++.+|++|+|+|+++..+...  ..|...+...  ++|+|+|+||+|+.+.+.. ..++..+.+...+..  ..++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCSS-HHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCchH-HHHHHHHHHHHhcccCCCCCE
Confidence            4 47899999999999988655443  3477777765  7999999999999876655 344443444443321  2479


Q ss_pred             EEeCcccCCCchHHHHHHHHHHcCC
Q 005908          154 VECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       154 ~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      ++|||++|.||+++|+.+.+.+...
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            9999999999999999999877543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.76  E-value=1.2e-18  Score=188.87  Aligned_cols=183  Identities=17%  Similarity=0.212  Sum_probs=126.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChh-hHhh------hhchH
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNK  492 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-~~~~------~~~~~  492 (670)
                      +..++|+|+|.||||||||+|+|++.++..+.+ ++++.+.....+.++|  ..+.+|||+|.. .+..      +.++.
T Consensus       241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~  318 (482)
T 1xzp_A          241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTL  318 (482)
T ss_dssp             HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred             cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHH
Confidence            346899999999999999999999987654433 4333344445566653  567889999986 4332      12256


Q ss_pred             hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEee
Q 005908          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVS  571 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS  571 (670)
                      .+++.+|++|+|+|++++.+++... ++..+    .    ++|+++|+||+|+.+. ...++..++   .+. .+++++|
T Consensus       319 ~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~----~~piivV~NK~DL~~~-~~~~~~~~~---~~~~~~~i~iS  385 (482)
T 1xzp_A          319 QEIEKADIVLFVLDASSPLDEEDRK-ILERI----K----NKRYLVVINKVDVVEK-INEEEIKNK---LGTDRHMVKIS  385 (482)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHHH-HHHHH----T----TSSEEEEEEECSSCCC-CCHHHHHHH---HTCSTTEEEEE
T ss_pred             HHhhcccEEEEEecCCCCCCHHHHH-HHHHh----c----CCCEEEEEECcccccc-cCHHHHHHH---hcCCCcEEEEE
Confidence            7889999999999999998876543 33322    1    5899999999999763 223333333   232 3599999


Q ss_pred             cccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcc
Q 005908          572 MKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSG  620 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (670)
                      |++| |++++++.|.+.+.....  ........+.++.++++++..++..
T Consensus       386 Aktg~Gi~eL~~~l~~~~~~~~~--~~~~~~~~~~R~~~~l~~a~~~L~~  433 (482)
T 1xzp_A          386 ALKGEGLEKLEESIYRETQEIFE--RGSDSLITNLRQKQLLENVKGHLED  433 (482)
T ss_dssp             GGGTCCHHHHHHHHHHHTHHHHH--HHTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhhcC--CCCcceEhhHHHHHHHHHHHHHHHH
Confidence            9999 999999999997542100  0111233456777777777776654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.76  E-value=1.9e-18  Score=192.00  Aligned_cols=163  Identities=15%  Similarity=0.176  Sum_probs=120.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEE------EEc--CCCceEEEEEecCChhhHhhhhch
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV------VDQ--PGGNKKTLILQEIPEEGVKKILSN  491 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~------vd~--~g~~~~~~i~d~~g~~~~~~~~~~  491 (670)
                      ....+||+++|.+|||||||+|+|++..+...+.+|++..+....      +.+  .+....+.+||++|++.+..+  .
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~--~  115 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS--H  115 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--C
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--H
Confidence            456799999999999999999999999888777778776665442      222  234678999999999888887  7


Q ss_pred             HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEe
Q 005908          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v  570 (670)
                      ..+++.+|++|+|+|+++.   +....|+..+..+..    +.|+++|+||+|+.+... ..+..++++...+.+ ++++
T Consensus       116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~v  187 (535)
T 3dpu_A          116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG----KSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRI  187 (535)
T ss_dssp             HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS----SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEEC
T ss_pred             HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC----CCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEE
Confidence            7888999999999999875   456788888887754    589999999999987544 366677777777765 9999


Q ss_pred             ecccC-ChHHHHHHHHHHHhCCC
Q 005908          571 SMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      ||++| |++++++.+.+.+....
T Consensus       188 SA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          188 SCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             CC-----CTTHHHHHHHHHTCTT
T ss_pred             ecCcccCHHHHHHHHHHHHhccc
Confidence            99999 99999999999987644

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.76  E-value=1.9e-18  Score=179.29  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=117.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCcc----chhhhHHH---hccC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLE----NKGKLNEE---LKRA   83 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~----~~~~~~~~---~~~a   83 (670)
                      .+|+|+|.+|||||||+|+|++.+.. .+++.+....... .+... ...+.+|||||+.+    +..+...+   ++.+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36899999999999999999987632 2233211111111 12222 36899999999643    33344444   4459


Q ss_pred             CEEEEEEECCC---hhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           84 DAVVLTYACNQ---QSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        84 d~ii~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      |++|+|+|+++   +.+++.+. .|..++..+.   .++|+++|+||+|+...      .+..+.+.+.+....++++||
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~iS  310 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS  310 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred             cEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence            99999999998   78888887 4888888764   37999999999998642      233456666665324699999


Q ss_pred             cccCCCchHHHHHHHHHHcCCCC-CCCc
Q 005908          158 ATTMIQVPDVFYYAQKAVLHPTA-PLFD  184 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~~~~-~~~~  184 (670)
                      |+++.||+++++.+.+.+..... +.|+
T Consensus       311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~  338 (342)
T 1lnz_A          311 AVTREGLRELLFEVANQLENTPEFPLYD  338 (342)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred             CCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence            99999999999999999875544 4443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.75  E-value=2e-18  Score=186.29  Aligned_cols=183  Identities=15%  Similarity=0.196  Sum_probs=118.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKE  493 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~  493 (670)
                      +..++|+|+|++|||||||+|+|++.++..+.. ++++.+.....+.++|  ..+.+|||+|...+..      +.++..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            456899999999999999999999987665443 4444333333444553  5677899999644332      223456


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                      +++.+|++++|+|++++.+... ..++..+.        ..|+++|+||+|+....... ..+++.   ...+++++||+
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~--------~~piivV~NK~Dl~~~~~~~-~~~~~~---~~~~~i~iSAk  366 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK--------HRPLILVMNKIDLVEKQLIT-SLEYPE---NITQIVHTAAA  366 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT--------TSCEEEEEECTTSSCGGGST-TCCCCT---TCCCEEEEBTT
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc--------CCcEEEEEECCCCCcchhhH-HHHHhc---cCCcEEEEECC
Confidence            7899999999999999877554 44444442        47999999999998743321 111111   23469999999


Q ss_pred             cC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhc
Q 005908          574 SK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVS  619 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (670)
                      +| |++++++.|.+.+.......++ .....+.+|.++++++..++.
T Consensus       367 tg~Gi~eL~~~i~~~~~~~~~~~~~-~~~~~~~R~~~~L~~a~~~L~  412 (462)
T 3geh_A          367 QKQGIDSLETAILEIVQTGKVQAAD-MDLAINQRQAAALTQAKMSLE  412 (462)
T ss_dssp             TTBSHHHHHHHHHHHHTTSSSSSCC-SSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCcc-cceechHHHHHHHHHHHHHHH
Confidence            99 9999999999998764422222 223456677777777776654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.75  E-value=6.8e-19  Score=187.46  Aligned_cols=163  Identities=18%  Similarity=0.186  Sum_probs=111.9

Q ss_pred             CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhh----
Q 005908            3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGK----   75 (670)
Q Consensus         3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----   75 (670)
                      +++.......++|+|+|++|||||||+|+|++..+.  ...+++... ......+. ....+.+|||||+.++...    
T Consensus        25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~  103 (423)
T 3qq5_A           25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLR  103 (423)
T ss_dssp             CCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCC
T ss_pred             ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHH
Confidence            344455667899999999999999999999998863  223332211 11222222 2238999999999876543    


Q ss_pred             ---hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCe
Q 005908           76 ---LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (670)
Q Consensus        76 ---~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (670)
                         ...+++.+|++|+|+|+.... .   ...|...++..  ++|+++|+||+|+......    +..+.+.+.++  .+
T Consensus       104 ~~~~~~~l~~aD~vllVvD~~~~~-~---~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g--~~  171 (423)
T 3qq5_A          104 VEKARRVFYRADCGILVTDSAPTP-Y---EDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE--AK  171 (423)
T ss_dssp             HHHHHHHHTSCSEEEEECSSSCCH-H---HHHHHHHHHHT--TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT--CC
T ss_pred             HHHHHHHHhcCCEEEEEEeCCChH-H---HHHHHHHHHhc--CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC--CC
Confidence               456889999999999983222 2   23588888877  8999999999999876443    33344444554  37


Q ss_pred             EEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          153 CVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       153 ~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      ++++||++|.|++++|+.+.+.+...
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999988544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.74  E-value=1.6e-17  Score=179.95  Aligned_cols=152  Identities=21%  Similarity=0.285  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhh---------HhhhhchHh
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG---------VKKILSNKE  493 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~---------~~~~~~~~~  493 (670)
                      .+|+|+|+||||||||+|+|++.....+.+ ++++.+.....+.+.|  ..+.+|||+|.+.         +...  +..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~--~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEV--TLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHH--HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHH--HHH
Confidence            489999999999999999999988654433 3333334445556653  4578899999653         2223  567


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH-HHHHHHhCCCCcEEeec
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSM  572 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSA  572 (670)
                      ++++||++++|+|++++.+..+ ..+...+...      ++|+++|+||+|+.+.  ..... .++. .+++.+++++||
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~-~lg~~~~~~iSA  147 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKED-ESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELY-SLGFGEPIPVSA  147 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHG-GGSSCSCEECBT
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHH-hcCCCCEEEEec
Confidence            8899999999999998766543 1222222222      6999999999998642  11222 3443 467756899999


Q ss_pred             ccC-ChHHHHHHHHHHHh
Q 005908          573 KSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~~~  589 (670)
                      ++| |++++++.+.+.+.
T Consensus       148 ~~g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          148 EHNINLDTMLETIIKKLE  165 (439)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhcc
Confidence            999 99999999998875

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.73  E-value=2.3e-17  Score=176.62  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=117.0

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CC----------CCCCeEeCC---ccc-----CCceeEEEEeC
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--PP----------VHAPTRLPP---DFY-----PDRVPVTIIDT   66 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~--~~----------~~~~~~~~~---~~~-----~~~~~~~i~Dt   66 (670)
                      ...++.++|+++|++|+|||||+|+|++.......  ..          .........   ...     .....+.+|||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            34567899999999999999999999985432210  00          000000000   001     11278999999


Q ss_pred             CCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH
Q 005908           67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ  146 (670)
Q Consensus        67 ~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~  146 (670)
                      ||++++...+...+..+|++|+|+|+++..++....+ |+..++... .+|+++|+||+|+.+........+.+..+...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998876666553 666666552 36999999999997643210111122222222


Q ss_pred             hc-cCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          147 FR-EIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       147 ~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      ++ ...+++++||++|.||+++++.+.+.+..+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            11 1237999999999999999999998775443

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.73  E-value=1.5e-17  Score=172.58  Aligned_cols=164  Identities=15%  Similarity=0.101  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH----hhh-hchHhhcccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKI-LSNKEALASC  498 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~~-~~~~~~~~~a  498 (670)
                      .+|+|+|.+|||||||+|+|++........+.++.......+.++ ....+.+||++|..+.    ..+ ......+..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            479999999999999999999876543333322222334456666 3457888999996432    112 1123345669


Q ss_pred             cEEEEEEECCC---cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEeeccc
Q 005908          499 DVTIFVYDSSD---EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKS  574 (670)
Q Consensus       499 d~vllv~D~s~---~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSA~~  574 (670)
                      |++|+|+|+++   +.+++.+..|..++..+.... .++|+++|+||+|+...   .+..+++++.+.. .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l-~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL-TERPQIIVANKMDMPEA---AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST-TTSCBCBEEECTTSTTH---HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh-cCCCEEEEEECccCCCC---HHHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   788999999999998865321 16999999999999863   2456667777763 3599999999


Q ss_pred             C-ChHHHHHHHHHHHhCCC
Q 005908          575 K-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~~~~  592 (670)
                      + |++++++.|.+.+....
T Consensus       314 g~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          314 REGLRELLFEVANQLENTP  332 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSCC
T ss_pred             CcCHHHHHHHHHHHHhhCc
Confidence            9 99999999999987544

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.73  E-value=5e-18  Score=170.96  Aligned_cols=172  Identities=15%  Similarity=0.141  Sum_probs=109.4

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCC-CCCeEeCCcccCCceeEEEEeCCCCccchhh----------
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----------   75 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------   75 (670)
                      ...+.++|+|+|++|||||||+|+|++.. +.....+. .+.......+...+..+.||||||+.++...          
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            34567999999999999999999999887 44332221 1111122234456788999999998754322          


Q ss_pred             -hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEe-CCCCCCCCCccchh-------hhhhHH
Q 005908           76 -LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGC-KLDLRGDHNATSLE-------EVMGPI  143 (670)
Q Consensus        76 -~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~N-K~Dl~~~~~~~~~~-------~~~~~~  143 (670)
                       ...+++.+|++|+|+|+++.....   ..+...+.+..   ...|+++|+| |+|+.... .  ..       ..+..+
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~--~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-L--MDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-H--HHHHHHCCCHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-H--HHHHHhcchHHHHHH
Confidence             224778999999999998633222   22334443321   1356666665 99997432 1  11       223345


Q ss_pred             HHHhccCCe-E--EEeCcccCCCchHHHHHHHHHHcCCCCCCCcc
Q 005908          144 MQQFREIET-C--VECSATTMIQVPDVFYYAQKAVLHPTAPLFDH  185 (670)
Q Consensus       144 ~~~~~~~~~-~--~~~SA~~~~gi~~l~~~i~~~~~~~~~~~~~~  185 (670)
                      ...++.... +  +++||++|.|++++|+.+.+.+.......|..
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~  216 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTN  216 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCH
Confidence            555553211 2  78999999999999999999887555344543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.73  E-value=1e-17  Score=171.78  Aligned_cols=158  Identities=18%  Similarity=0.156  Sum_probs=109.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCc-c--------chhhhHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-E--------NKGKLNE   78 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~--------~~~~~~~   78 (670)
                      .+..+|+|+|++|||||||+|+|++..+.  ...+++... .....+..++..+.+|||||+. .        +......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~-~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRH-RIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSS-CEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCccee-eEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            45568999999999999999999998753  223322211 1222344567889999999987 2        2223346


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      +++.+|++++|+|+++ -+  .....+...+...  +.|+++|+||+|+.....  ...+.+..+...++. ..++++||
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~--~~~~~l~~l~~~~~~-~~~i~iSA  156 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG--KAPVILAVNKVDNVQEKA--DLLPHLQFLASQMNF-LDIVPISA  156 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSCC-SEEEECCT
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc--CCCEEEEEECcccCccHH--HHHHHHHHHHHhcCc-CceEEEEC
Confidence            6788999999999877 22  2222344555543  799999999999975211  233444555554542 36999999


Q ss_pred             ccCCCchHHHHHHHHHHc
Q 005908          159 TTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~  176 (670)
                      ++|.|++++++.+.+.+.
T Consensus       157 ~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          157 ETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTTHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhCC
Confidence            999999999999987654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.73  E-value=1e-18  Score=190.73  Aligned_cols=161  Identities=15%  Similarity=0.117  Sum_probs=115.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ++..+|+++|++|+|||||+++|.+..+... .+++..... ...+. ..+..+.||||||++.|..++..+++.+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~-~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIG-AFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTT-SCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEe-EEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            3568999999999999999999998765443 222211111 11222 24568999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHH---HHHhccCCeEEEeCcccCCCc
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI---MQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      +|+|+++....+...  ++..+...  ++|+++|+||+|+.+.+.. .....+..+   ...++...+++++||++|.||
T Consensus        81 LVVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           81 LVVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             EECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            999999876665543  44555544  7899999999999764332 112221111   112222237999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++++.+...+.
T Consensus       156 ~eLle~I~~l~~  167 (537)
T 3izy_P          156 MALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhh
Confidence            999999988764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.73  E-value=2.5e-17  Score=173.40  Aligned_cols=159  Identities=17%  Similarity=0.135  Sum_probs=112.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch---------hhhHHH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEE   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~   79 (670)
                      ...++|+++|.+|||||||+|+|++..+... .+.+..... ...+...+..+.+|||||+....         ......
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN-VGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE-EEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee-EEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            4678999999999999999999998774222 332221211 11223346789999999985432         112234


Q ss_pred             hccCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      ...+|++++|+|+++..  +++... .|+..+.....++|+++|+||+|+.....+    +....++...+  .++++||
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~--~~~~~iS  316 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEENI----KRLEKFVKEKG--LNPIKIS  316 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHHH----HHHHHHHHHTT--CCCEECB
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHHH----HHHHHHHHhcC--CCeEEEe
Confidence            45799999999998876  667665 488888765458999999999999754221    22333344443  3799999


Q ss_pred             cccCCCchHHHHHHHHHHc
Q 005908          158 ATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~  176 (670)
                      |++|+||+++++++.+.+.
T Consensus       317 A~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999999999999998764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.72  E-value=4.4e-17  Score=167.14  Aligned_cols=157  Identities=17%  Similarity=0.244  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCceEEEEEecCChh-hHhh------hhchHh
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNKE  493 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~-t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-~~~~------~~~~~~  493 (670)
                      ..+|+|+|++|||||||+|+|++..+..++. + |+... ....+..  +...+.++||+|.. ....      ......
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~-~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR-IVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC-EEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee-EEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            4589999999999999999999998765543 2 43322 2223333  34678889999986 2211      111467


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeec
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      +++.+|++++|+|+++ .+  ....++......   .  +.|+++|+||+|+.. .....+..+++.+.+++.+++++||
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~---~--~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA  156 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE---G--KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISA  156 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS---S--SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh---c--CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEEC
Confidence            7899999999999987 33  223333332221   1  699999999999987 2333455666666677656899999


Q ss_pred             ccC-ChHHHHHHHHHHHhC
Q 005908          573 KSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++| |++++++.+.+.+..
T Consensus       157 ~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          157 ETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTTTTHHHHHHHHHTTCCB
T ss_pred             CCCCCHHHHHHHHHHhCCc
Confidence            999 999999999987754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.70  E-value=3.9e-17  Score=178.09  Aligned_cols=162  Identities=17%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCC----C---CCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES----V---PEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~----~---~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (670)
                      ...++.++|+++|++++|||||+++|++..    .   ... .+++. .......+...+..+.+|||||++++...+..
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGIT-IDIGFSAFKLENYRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccE-EecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence            345678999999999999999999999876    1   111 11111 00011123335688999999999998888889


Q ss_pred             HhccCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-cc-CCeE
Q 005908           79 ELKRADAVVLTYACNQQ---STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-RE-IETC  153 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~-~~~~  153 (670)
                      .+..+|++|+|+|+++.   ++.+.     +..++..  ++|+++|+||+|+.+........+.+..+.... +. ..++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~-----l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEH-----MLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHH-----HHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHH-----HHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            99999999999999883   44433     3344444  789999999999975321101223333444333 10 2479


Q ss_pred             EEeCcccCCCchHHHHHHHHHHc
Q 005908          154 VECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       154 ~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      +++||++|.||+++++.+.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.70  E-value=3.3e-16  Score=164.92  Aligned_cols=161  Identities=19%  Similarity=0.198  Sum_probs=116.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----h--hchHh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I--LSNKE  493 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~--~~~~~  493 (670)
                      ...++|+++|.+|||||||+|+|.+........+.++.......+...  ...+.+||++|......     +  .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            467899999999999999999999987543322333333333444333  45678899999633210     0  00223


Q ss_pred             hcccccEEEEEEECCCcc--cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908          494 ALASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      ....+|++++|+|++++.  ++.....|+..+.....    +.|+++|+||+|+..... .+...++++..+.+ ++++|
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~----~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~-~~~iS  316 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLN-PIKIS  316 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT----TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCC-CEECB
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC----CCCEEEEEECcccCChHH-HHHHHHHHHhcCCC-eEEEe
Confidence            445699999999999876  77888888888877543    589999999999987432 23455556666654 99999


Q ss_pred             cccC-ChHHHHHHHHHHHh
Q 005908          572 MKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       572 A~~g-~v~~l~~~l~~~~~  589 (670)
                      |++| |++++++++.+.+.
T Consensus       317 A~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999 99999999999875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.70  E-value=6.5e-18  Score=179.92  Aligned_cols=160  Identities=13%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhh-----hchHh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKE  493 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~-----~~~~~  493 (670)
                      ....++|+|+|.+|+|||||+|+|++..+...+. ++++.+.....+... +...+.+|||+|.+.+..+     .++..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence            3456999999999999999999999988754433 333334444556666 3457889999998765432     22466


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                      ++..+|++|+|+|++..   .....|+..+...      ++|+++|+||+|+...... +..+++++.++++ ++++||+
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~-v~~vSAk  178 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAK-VLLVSAL  178 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCC-CCCCSSC
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCC-EEEEECC
Confidence            88999999999999333   4456777777765      6999999999999875443 5566666667764 9999999


Q ss_pred             cC-ChHHHHHHHHHHHhCC
Q 005908          574 SK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~~  591 (670)
                      +| |++++|+.|.+.+...
T Consensus       179 tg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHhhhhh
Confidence            99 9999999999998554

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=2e-17  Score=161.78  Aligned_cols=144  Identities=19%  Similarity=0.253  Sum_probs=102.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (670)
                      ...++|+|+|++|||||||+++|.+..+...   +.++++..+         ....+.+||++|++.+...  ...+++.
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~   78 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT   78 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHH--HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHH--HHHHHHh
Confidence            4569999999999999999999999876542   223333322         2345678999999888776  5666666


Q ss_pred             ----ccEEEEEEECC-CcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCccc-------HHHHHHHHHHhCC
Q 005908          498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMA-------VQDSARVTQELGI  564 (670)
Q Consensus       498 ----ad~vllv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~  564 (670)
                          +|++|+|+|++ ++.++.....|+..+...... ...++|+++|+||+|+......       .+++..++...+.
T Consensus        79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence                89999999999 888999999998887654211 0016999999999999875442       3445666666665


Q ss_pred             CCcEEeecccC-C
Q 005908          565 EPPIPVSMKSK-D  576 (670)
Q Consensus       565 ~~~~~vSA~~g-~  576 (670)
                      . ++++||++| +
T Consensus       159 ~-~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 S-LNEVERKINEE  170 (218)
T ss_dssp             H-HHC--------
T ss_pred             c-ccccccccccc
Confidence            4 999999998 5

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.69  E-value=2.7e-16  Score=168.24  Aligned_cols=166  Identities=17%  Similarity=0.183  Sum_probs=116.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CCcc--------cceE----EEEEEcC---CCceEEEEEecCC
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA---PTTG--------EQYA----VNVVDQP---GGNKKTLILQEIP  481 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~---~t~~--------~~~~----~~~vd~~---g~~~~~~i~d~~g  481 (670)
                      .+..++|+++|.+|+|||||+|+|++........   .+..        ..+.    .......   +....+.+||++|
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            3567999999999999999999999854332110   0000        0000    0000000   0125778899999


Q ss_pred             hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH
Q 005908          482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE  561 (670)
Q Consensus       482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  561 (670)
                      ++.+...  +...+..+|++++|+|++++.++.+..+++..+....     ..|+++|+||+|+.+.....+..+++.+.
T Consensus        85 h~~~~~~--~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           85 HEVLMAT--MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             CGGGHHH--HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHH--HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            9888776  7888899999999999999876777788877666552     35899999999998754333333333333


Q ss_pred             h---C--CCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          562 L---G--IEPPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       562 ~---~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      +   +  ..+++++||++| |++++++.|.+.+..+.
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            2   2  236999999999 99999999999876544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.69  E-value=7.8e-17  Score=160.02  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=104.8

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCC-CCCCeEeCCcccCCceeEEEEeCCCCcc-----------chhh
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLE-----------NKGK   75 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~   75 (670)
                      ....+||+|+|++|||||||+|+|++..+... .++ ..+.......+...+..+.||||||..+           +...
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999999886443 221 1111112223445677899999999653           2233


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccc----hhhhhhHHHHHhc
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFR  148 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~  148 (670)
                      +..+++++|++|+|+|+++....+ .  .|+..+...   ....|+++|+||+|+.....+..    ..+.+..+...++
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~~-~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEEE-H--KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSHH-H--HHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHHH-H--HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            335567889999999987654422 1  234444221   12469999999999876543310    1235677778887


Q ss_pred             cCCeEEEeCccc-----CCCchHHHHHHHHHHcCCCC
Q 005908          149 EIETCVECSATT-----MIQVPDVFYYAQKAVLHPTA  180 (670)
Q Consensus       149 ~~~~~~~~SA~~-----~~gi~~l~~~i~~~~~~~~~  180 (670)
                      .  .++.+++..     +.++.++++.+.+.+.....
T Consensus       183 ~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g  217 (239)
T 3lxx_A          183 D--RYCALNNKATGAEQEAQRAQLLGLIQRVVRENKE  217 (239)
T ss_dssp             S--SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             C--EEEEEECCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence            5  466666653     37899999988887754433

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.69  E-value=9.1e-17  Score=153.74  Aligned_cols=120  Identities=20%  Similarity=0.273  Sum_probs=88.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc----CC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----AD   84 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad   84 (670)
                      ..+.++|+++|++|||||||+++|++..+....++......    .....+.+.+|||||+..+...+..+++.    +|
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  120 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK  120 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence            45679999999999999999999999876542211111111    12256789999999999887777777766    89


Q ss_pred             EEEEEEECC-ChhhHHHHHHHHHHHH-Hh----cCCCCCEEEEEeCCCCCCCCCc
Q 005908           85 AVVLTYACN-QQSTLSRLSSYWLPEL-RR----LEIKVPIIVAGCKLDLRGDHNA  133 (670)
Q Consensus        85 ~ii~v~d~~-~~~s~~~~~~~~~~~l-~~----~~~~~pvilv~NK~Dl~~~~~~  133 (670)
                      ++|+|||++ +..++..+.. |+..+ ..    ..+++|+++|+||+|+......
T Consensus       121 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          121 GLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             EEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             EEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence            999999999 8899988875 54444 32    2358999999999999876543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.68  E-value=1.2e-16  Score=167.54  Aligned_cols=163  Identities=16%  Similarity=0.129  Sum_probs=105.4

Q ss_pred             cceE-EEEEcCCCCCHHHHHHHHHcCCCCC-CCCC-CCCCeEeCCcccCCceeEEEEeCCCCcc---------chhhhHH
Q 005908           11 TGVR-VVVVGDRGTGKSSLIAAAATESVPE-KVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLE---------NKGKLNE   78 (670)
Q Consensus        11 ~~~k-I~ivG~~~vGKSSLi~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~   78 (670)
                      ..++ |+|+|.+|||||||+|+|++..+.. +.+. +.+.+..  .+...+..+.+|||+|+..         +.. ...
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~--~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~  253 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY--AIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLS  253 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--EEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--EEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHH
Confidence            3566 9999999999999999999887522 2222 2112222  2333447899999999632         111 223


Q ss_pred             HhccCCEEEEEEECCChh--hHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-ccCCeEE
Q 005908           79 ELKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-REIETCV  154 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~  154 (670)
                      .+..+|++++|+|++++.  ..+.+. .|...++... .++|+++|+||+|+...... ........+...+ ....+++
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~~~~~  331 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPIFDVI  331 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCEEEEE
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCCCcEE
Confidence            578999999999998876  455544 4666666543 47899999999998754211 1111222333444 2112589


Q ss_pred             EeCcccCCCchHHHHHHHHHHcCC
Q 005908          155 ECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      ++||++|.|++++++.+.+.+..+
T Consensus       332 ~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          332 PISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCcCHHHHHHHHHHHhccc
Confidence            999999999999999998876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.68  E-value=1.8e-16  Score=170.97  Aligned_cols=159  Identities=16%  Similarity=0.117  Sum_probs=106.3

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCC------------------------------CCCCCCeEeCCcc
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV------------------------------PPVHAPTRLPPDF   54 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~   54 (670)
                      ...++.++|+++|++|+|||||+++|++..  +....                              +++ +.......+
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~Gi-Tid~~~~~~   90 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGK-TVEVGRAYF   90 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCc-eEEEeEEEE
Confidence            345678999999999999999999996542  11100                              111 011122234


Q ss_pred             cCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCC-EEEEEeCCCC
Q 005908           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS---RLSSYWLPELRRLEIKVP-IIVAGCKLDL  127 (670)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~l~~~~~~~p-vilv~NK~Dl  127 (670)
                      ...+..+.||||||+++|...+..+++.+|++|+|+|+++...   ++   ... +.+..+...  ++| +|+|+||+|+
T Consensus        91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~-e~l~~~~~~--~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR-EHAMLAKTA--GVKHLIVLINKMDD  167 (439)
T ss_pred             ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHH-HHHHHHHHc--CCCeEEEEeecCCC
Confidence            4567799999999999999999999999999999999987632   11   111 133334444  667 9999999999


Q ss_pred             CCCCC----ccchhhhhhHHHHHhcc----CCeEEEeCcccCCCchHHHH
Q 005908          128 RGDHN----ATSLEEVMGPIMQQFRE----IETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       128 ~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~  169 (670)
                      .....    .....+.+..+.+.++.    ..+++++||++|.|+.++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            64211    00112333444444442    23799999999999999655

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.68  E-value=2.1e-17  Score=169.55  Aligned_cols=132  Identities=10%  Similarity=0.045  Sum_probs=99.6

Q ss_pred             HHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHH
Q 005908           27 SLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSY  104 (670)
Q Consensus        27 SLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~  104 (670)
                      +|+++++.+.|. ..+.++.+.... ..+..++ ++.+|||  ++++..+++.+++++|++|+|||++++. +++.+. +
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~  106 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K  106 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence            688899888887 565444444331 2222233 7999999  8899999999999999999999999987 677776 5


Q ss_pred             HHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908          105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       105 ~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |+..++..  ++|++||+||+|+.+.+.+    +....++..++...++++|||++|.||+++|.
T Consensus       107 ~l~~~~~~--~~piilv~NK~DL~~~~~v----~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~  165 (301)
T 1u0l_A          107 FLVLAEKN--ELETVMVINKMDLYDEDDL----RKVRELEEIYSGLYPIVKTSAKTGMGIEELKE  165 (301)
T ss_dssp             HHHHHHHT--TCEEEEEECCGGGCCHHHH----HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred             HHHHHHHC--CCCEEEEEeHHHcCCchhH----HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHH
Confidence            88888764  8999999999999754321    22445555554213799999999999998886

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.68  E-value=1.4e-17  Score=180.18  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=108.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ++..+|+++|++++|||||+++|.+..+.... +++. .......+..++..+.||||||++.|..++...+..+|++|+
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT-~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGIT-QHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCC-CCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCee-EeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            46689999999999999999999876544332 2211 111112333456789999999999999988889999999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh---hHHHHHhccCCeEEEeCcccCC
Q 005908           89 TYACNQQ---STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        89 v~d~~~~---~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      |+|+++.   ++.+.     +..++..  ++|+++++||+|+...+.. .....+   ..+...++...+++++||++|.
T Consensus        81 VVda~~g~~~qT~e~-----l~~~~~~--~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           81 VVAADDGVMPQTIEA-----IQHAKAA--QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEETTTBSCTTTHHH-----HHHHHHT--TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EeecccCccHHHHHH-----HHHHHhc--CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            9999884   44433     2334444  7899999999999753211 111110   1111223323479999999999


Q ss_pred             CchHHHHHHHH
Q 005908          163 QVPDVFYYAQK  173 (670)
Q Consensus       163 gi~~l~~~i~~  173 (670)
                      ||+++++.+..
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.67  E-value=7.7e-16  Score=161.42  Aligned_cols=165  Identities=18%  Similarity=0.163  Sum_probs=108.7

Q ss_pred             eeE-EEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------HhhhhchHhhc
Q 005908          423 VFR-CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEAL  495 (670)
Q Consensus       423 ~~k-I~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~~~~~~~~~~~  495 (670)
                      .++ |+|+|.+|||||||+|+|.+..+.....+.++.+.....+.++|  ..+.+||++|...      .+.+..+...+
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~~  255 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSEA  255 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHHH
Confidence            344 99999999999999999999876333223223234445566674  5677899999511      12222245578


Q ss_pred             ccccEEEEEEECCCcc--cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHh-C-CCCcEE
Q 005908          496 ASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL-G-IEPPIP  569 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~-~-~~~~~~  569 (670)
                      ..+|++++|+|++++.  +......|...+......   +.|+++|+||+|+......  ...+..+++.+ . -+++++
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~---~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS---GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC---SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC---CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            9999999999999876  455555555555443222   5899999999999764311  22333445555 2 125899


Q ss_pred             eecccC-ChHHHHHHHHHHHhCCC
Q 005908          570 VSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      +||++| |++++++.|.+.+..+.
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EECCCCcCHHHHHHHHHHHhcccC
Confidence            999999 99999999999876443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.67  E-value=1.1e-16  Score=175.66  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=86.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------C------CCCCCCCeEeCCcccCCceeEEEEeCC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-----------------K------VPPVHAPTRLPPDFYPDRVPVTIIDTS   67 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-----------------~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~   67 (670)
                      +..+|+|+|++|||||||+++|+...-..                 +      ..++. .......+...++.++|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS-VTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS-SSSSEEEEEETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee-EEEeEEEEEeCCEEEEEEECC
Confidence            45789999999999999999997221100                 0      00100 001112344567899999999


Q ss_pred             CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      |+.+|...+..+++.+|++|+|+|+++..+.....  ++..+...  ++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence            99999999999999999999999999887777654  55566655  7999999999999654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.67  E-value=5.5e-16  Score=166.16  Aligned_cols=165  Identities=19%  Similarity=0.131  Sum_probs=102.5

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCC-CCCCeEeCCc---------c------c--C----CceeE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPP-VHAPTRLPPD---------F------Y--P----DRVPV   61 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~-~~~~~~~~~~---------~------~--~----~~~~~   61 (670)
                      ..++.++|+++|+.++|||||+++|++..   +... .++ +.........         +      .  .    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            34567999999999999999999998643   2222 121 1111100000         0      1  1    12789


Q ss_pred             EEEeCCCCccchhhhHHHhccCCEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh
Q 005908           62 TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (670)
Q Consensus        62 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~  137 (670)
                      .+|||||+++|...+...+..+|++|+|+|+++.    ++.+.+     ..++.. ...|+++|+||+|+.+........
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEIL-GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHHT-TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHHc-CCCeEEEEEEccCCCCHHHHHHHH
Confidence            9999999988877777778888999999999864    344433     233333 135899999999998754321122


Q ss_pred             hhhhHHHHHhc-cCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          138 EVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      +.+..+.+.+. ...+++++||++|.||+++++.+.+.+..+
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            33344444321 124799999999999999999999877644

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.66  E-value=2.2e-16  Score=172.87  Aligned_cols=156  Identities=19%  Similarity=0.145  Sum_probs=101.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--CCC------------------------C------CCCCCCCeEeCCcccCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPE------------------------K------VPPVHAPTRLPPDFYPD   57 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~------------------------~------~~~~~~~~~~~~~~~~~   57 (670)
                      ++.+||+++|++|+|||||+++|++..  +..                        +      .+++.. ......+...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi-~~~~~~~~~~  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV-SICTSHFSTH  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSC-CCCEEEEECS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcce-EeeeEEEecC
Confidence            456999999999999999999998652  110                        0      011100 0011234456


Q ss_pred             ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC
Q 005908           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSR-----LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~  132 (670)
                      +..+.||||||+++|...+..+++.+|++|+|+|+++..++..     ........+... ...|+|+|+||+|+.+.+.
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCH
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchH
Confidence            7899999999999999999999999999999999998754322     111233333333 2357999999999976433


Q ss_pred             ccchhh---hhhHHHHHhcc---CCeEEEeCcccCCCchHHH
Q 005908          133 ATSLEE---VMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (670)
Q Consensus       133 ~~~~~~---~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~  168 (670)
                      . ..++   .+..+...++.   ..+++++||++|.||.++.
T Consensus       189 ~-~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~  229 (483)
T 3p26_A          189 Q-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  229 (483)
T ss_dssp             H-HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred             H-HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence            2 2222   22333333332   2379999999999998753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.66  E-value=4.2e-16  Score=160.20  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=104.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC----CC----------------------CeEe--C--C-----c
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HA----------------------PTRL--P--P-----D   53 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~----~~----------------------~~~~--~--~-----~   53 (670)
                      ....++|+|+|++|||||||+|+|++..+.+...+.    ..                      .+..  .  .     .
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999999998874221100    00                      0000  0  0     0


Q ss_pred             c-----------------cCCceeEEEEeCCCCcc-------------chhhhHHHhccCCEEE-EEEECCChhhHHHHH
Q 005908           54 F-----------------YPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVV-LTYACNQQSTLSRLS  102 (670)
Q Consensus        54 ~-----------------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~  102 (670)
                      +                 ......+.||||||+..             +...+..+++.++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence            0                 01136899999999742             3345667888888776 799988765444432


Q ss_pred             HHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc----cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          103 SYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----EIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       103 ~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                       .|...+...  +.|+++|+||+|+.+....  ..+.   +...+.    ...+++++||++|.|++++++.+.+..
T Consensus       183 -~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~---~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          183 -KIAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             -HHHHHHCTT--CSSEEEEEECGGGSCTTCC--CHHH---HTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             -HHHHHhCCC--CCeEEEEEEccccCCCCch--HHHH---HhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence             255555543  7899999999999765432  1111   111111    112688999999999999999988753

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.66  E-value=1.9e-16  Score=169.72  Aligned_cols=165  Identities=15%  Similarity=0.174  Sum_probs=113.7

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcC--------CCCCC----------CCCCCCCeEeCCcccCCceeEEEEeCCCC
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATE--------SVPEK----------VPPVHAPTRLPPDFYPDRVPVTIIDTSSS   69 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~   69 (670)
                      ..++.++|+++|++|+|||||+++|++.        .+...          ..++... .....+...+..+.+|||||+
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~~~~~~iiDtpG~   85 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN-TAHVEYETAKRHYSHVDCPGH   85 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS-CEEEEEECSSCEEEEEECCCS
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEE-eeeeEeccCCeEEEEEECCCh
Confidence            3456799999999999999999999873        22110          0010000 012234456788999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHh
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQF  147 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~  147 (670)
                      ++|...+..+++.+|++|+|+|+++....+. . .|+..++..  ++| +++|+||+|+...... ....+.+..+...+
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~-~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT-R-EHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-H-HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            9998888899999999999999988765443 2 366666665  788 8999999999752111 01122345555555


Q ss_pred             cc---CCeEEEeCcccCCC------------------chHHHHHHHHHHcC
Q 005908          148 RE---IETCVECSATTMIQ------------------VPDVFYYAQKAVLH  177 (670)
Q Consensus       148 ~~---~~~~~~~SA~~~~g------------------i~~l~~~i~~~~~~  177 (670)
                      +.   ..+++++||++|.|                  +.++++.+.+.+..
T Consensus       162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            42   24799999999987                  66777766665543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=1.5e-15  Score=164.09  Aligned_cols=157  Identities=17%  Similarity=0.120  Sum_probs=105.5

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC----------CCCCCCC-e-----------------Ee---CCccc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPPVHAP-T-----------------RL---PPDFY   55 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~----------~~~~~~~-~-----------------~~---~~~~~   55 (670)
                      .++.++|+++|++|+|||||+++|++..  +...          .+++.+. .                 ++   ...+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            4556999999999999999999998654  1111          1111100 0                 00   01133


Q ss_pred             CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CEEEEEeCCCCCCCCCc-
Q 005908           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-PIIVAGCKLDLRGDHNA-  133 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-pvilv~NK~Dl~~~~~~-  133 (670)
                      ..+..+.+|||||+++|...+..+++.+|++|+|+|+++....+..  .++..+...  +. |+|+|+||+|+.+.... 
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence            4567899999999999988888999999999999999886543332  255555554  44 69999999999763211 


Q ss_pred             -cchhhhhhHHHHHhc---cCCeEEEeCcccCCCchHHHH
Q 005908          134 -TSLEEVMGPIMQQFR---EIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       134 -~~~~~~~~~~~~~~~---~~~~~~~~SA~~~~gi~~l~~  169 (670)
                       ....+.+..+.+.++   ...+++++||++|.||+++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence             012233445555554   113799999999999998543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.64  E-value=8.5e-16  Score=170.37  Aligned_cols=161  Identities=18%  Similarity=0.230  Sum_probs=111.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCC-----CCCCC------CCCeE----eCCcc---cCCceeEEEEeCCCCc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSL   70 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~   70 (670)
                      +-.+|+|+|+.++|||||+++|+...  +..     .....      .+.+.    ....+   +...+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35689999999999999999998632  111     00000      00000    11111   2345889999999999


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-  149 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-  149 (670)
                      +|...+..+++.+|++|+|+|+++..+.+.... |...+. .  ++|+++|+||+|+...+    ..+....+...++. 
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-~--~ipiIvViNKiDl~~a~----~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-M--DLEVVPVLNKIDLPAAD----PERVAEEIEDIVGID  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-T--TCEEEEEEECTTSTTCC----HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-C--CCCEEEeeeccCccccc----HHHHHHHHHHHhCCC
Confidence            999999999999999999999999877776653 554443 3  78999999999997643    23444556665542 


Q ss_pred             CCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          150 IETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       150 ~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      ..+++++||++|.||+++++.+.+.+..+.
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            124899999999999999999999887654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.64  E-value=4e-15  Score=147.62  Aligned_cols=163  Identities=13%  Similarity=0.079  Sum_probs=106.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCceEEEEEecCCh-----------hhHh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPE-----------EGVK  486 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----------~~~~  486 (670)
                      ....++|+|+|++|||||||+|+|++..+.....+  +++.......+...  ...+.+|||+|.           ..+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHH
Confidence            34679999999999999999999999888655444  33444444445554  356788999992           2333


Q ss_pred             hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccH-------HHHHHHH
Q 005908          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-------QDSARVT  559 (670)
Q Consensus       487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~-------~~~~~~~  559 (670)
                      ..  ...+++.+|++|+|+|+++...  ....++..+....... ...|+++|+||+|+.......       +.++++.
T Consensus       104 ~~--~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          104 RC--ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM  178 (239)
T ss_dssp             HH--HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred             HH--HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence            33  4456678999999999986544  2233343333211100 046999999999987643322       4577888


Q ss_pred             HHhCCCCcEEeecc-----cC-ChHHHHHHHHHHHhC
Q 005908          560 QELGIEPPIPVSMK-----SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       560 ~~~~~~~~~~vSA~-----~g-~v~~l~~~l~~~~~~  590 (670)
                      +..+.. ++.++++     ++ ++.++++.+.+.+..
T Consensus       179 ~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          179 DIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            888876 7777665     34 789999999888754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.64  E-value=1.5e-15  Score=168.09  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC-----CCCC------CCCeE----eCCcc---cCCceeEEEEeCCCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEK-----VPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSS   69 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~-----~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~   69 (670)
                      .+..+|+|+|+.++|||||+++|+...  +...     ....      .+.+.    ....+   +...+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            345789999999999999999998631  1110     0000      00000    11111   233588999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (670)
                      .+|...+..+++.+|++|+|+|+++..+.+.... |..... .  ++|+++|+||+|+...+    ..+...++...++.
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-~--~ipiIvviNKiDl~~a~----~~~v~~el~~~lg~  155 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-Q--DLVIIPVINKIDLPSAD----VDRVKKQIEEVLGL  155 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-T--TCEEEEEEECTTSTTCC----HHHHHHHHHHTSCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-C--CCCEEEEEeccCccccC----HHHHHHHHHHhhCC
Confidence            9999989999999999999999999887777653 554443 3  79999999999997642    23444555555542


Q ss_pred             C-CeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          150 I-ETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       150 ~-~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      . .+++++||++|.||+++++.+.+.+..+.
T Consensus       156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          156 DPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             CGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             CcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            1 24899999999999999999999887654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.64  E-value=2.1e-17  Score=180.36  Aligned_cols=161  Identities=16%  Similarity=0.159  Sum_probs=117.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..++|+|+|.+|+|||||+++|.+..+.....++++.++....+.++ ....+.+||++|++.|..+  ...++..+|++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~--~~~~~~~aD~v   79 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAM--RARGTQVTDIV   79 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTS--BBSSSBSBSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHH--HHHHHccCCEE
Confidence            45789999999999999999999887766655655554544455554 2346778999999988887  77888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHH---HHHhC-CCCcEEeecccC
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARV---TQELG-IEPPIPVSMKSK  575 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~---~~~~~-~~~~~~vSA~~g  575 (670)
                      ++|+|++++...+.... +..+...      ++|+++|+||+|+.+....  ......+   +..++ ..+++++||++|
T Consensus        80 ILVVDa~dg~~~qt~e~-l~~~~~~------~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           80 ILVVAADDGVMKQTVES-IQHAKDA------HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             EEECBSSSCCCHHHHHH-HHHHHTT------TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEEEECCCCccHHHHHH-HHHHHHc------CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            99999999876554433 3333332      6899999999999753221  2222111   11111 125899999999


Q ss_pred             -ChHHHHHHHHHHHhCCC
Q 005908          576 -DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~~  592 (670)
                       |++++++.+...+..+.
T Consensus       153 ~GI~eLle~I~~l~~~~~  170 (537)
T 3izy_P          153 ENMMALAEATIALAEMLE  170 (537)
T ss_dssp             CSSHHHHHHHHHHHTTCC
T ss_pred             CCchhHHHHHHHhhhccc
Confidence             99999999999876443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.64  E-value=1.8e-15  Score=167.83  Aligned_cols=162  Identities=14%  Similarity=0.182  Sum_probs=114.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------C--CCcccceEE--EEEEc---CCCceEEEEEecCChh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-----------A--PTTGEQYAV--NVVDQ---PGGNKKTLILQEIPEE  483 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-----------~--~t~~~~~~~--~~vd~---~g~~~~~~i~d~~g~~  483 (670)
                      +..+|+|+|.+++|||||+++|+........           +  .+.+..+..  ..+.+   +|....+.+|||+|+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4579999999999999999999863211100           0  011111111  11111   4445788899999998


Q ss_pred             hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC
Q 005908          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG  563 (670)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~  563 (670)
                      .|...  ...+++.+|++|+|+|++++.+++....|......       ++|+++|+||+|+.... ..+..+++.+.++
T Consensus        83 dF~~e--v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-------~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg  152 (599)
T 3cb4_D           83 DFSYE--VSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-------DLEVVPVLNKIDLPAAD-PERVAEEIEDIVG  152 (599)
T ss_dssp             GGHHH--HHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-------TCEEEEEEECTTSTTCC-HHHHHHHHHHHTC
T ss_pred             HHHHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-------CCCEEEeeeccCccccc-HHHHHHHHHHHhC
Confidence            88776  77889999999999999999888877777665532       69999999999998643 3445667777777


Q ss_pred             CC--CcEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908          564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       564 ~~--~~~~vSA~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      +.  +++++||++| |++++++.+.+.+..+..
T Consensus       153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~  185 (599)
T 3cb4_D          153 IDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG  185 (599)
T ss_dssp             CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred             CCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence            64  5999999999 999999999999876553

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=7.4e-15  Score=157.36  Aligned_cols=165  Identities=17%  Similarity=0.167  Sum_probs=106.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----ceEEEE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLI  476 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~---~~~~~--t~~~~~~~~~vd~-------------~--g~----~~~~~i  476 (670)
                      +..++|+++|.+++|||||+++|.+....   ....+  |+...+....+..             +  |.    ...+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            45699999999999999999999965422   22222  4443333322211             2  11    257889


Q ss_pred             EecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HH
Q 005908          477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQ  553 (670)
Q Consensus       477 ~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~  553 (670)
                      ||++|++.|...  ....+..+|++|+|+|++++....+..+.+..+....     ..|+++|+||+|+.+....   .+
T Consensus        86 iDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~-----~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           86 VDSPGHETLMAT--MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG-----IDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EECSSHHHHHHH--HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EECCCHHHHHHH--HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC-----CCeEEEEEEccCCCCHHHHHHHHH
Confidence            999999988775  6777888999999999997642223333333333221     3589999999999874432   34


Q ss_pred             HHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          554 DSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       554 ~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      ++.++++...  ..+++++||++| |+++|++.|.+.+..+.
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~  200 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK  200 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence            4555554421  236999999999 99999999998776543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.64  E-value=6e-16  Score=171.83  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=107.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-C---CCCCeEeCCc--------------ccCCceeEEEEeCCCCcc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-P---VHAPTRLPPD--------------FYPDRVPVTIIDTSSSLE   71 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-~---~~~~~~~~~~--------------~~~~~~~~~i~Dt~G~~~   71 (670)
                      .+..+|+|+|++|+|||||+++|++..+....+ +   ..+.......              +......+.||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            456899999999999999999999766543322 1   1111111100              111223599999999999


Q ss_pred             chhhhHHHhccCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--------------c
Q 005908           72 NKGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------------T  134 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--------------~  134 (670)
                      |...+..+++.+|++|+|+|+++   +++++.+.     .++..  ++|+++|+||+|+......              .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99888888999999999999998   55555432     34444  7999999999999643110              0


Q ss_pred             ch----hhhhhHHHHHh----------------ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          135 SL----EEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       135 ~~----~~~~~~~~~~~----------------~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ..    .+.+..+...+                +...+++++||++|.||+++++.+...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            00    01111111111                12237999999999999999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.64  E-value=3.2e-15  Score=165.37  Aligned_cols=162  Identities=18%  Similarity=0.198  Sum_probs=116.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CC------CCcccceEEEEEE-cCCCceEEEEEecCChh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-----------YA------PTTGEQYAVNVVD-QPGGNKKTLILQEIPEE  483 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-----------~~------~t~~~~~~~~~vd-~~g~~~~~~i~d~~g~~  483 (670)
                      +..+|+|+|.+++|||||+++|+.......           .+      .|+........+. .+|....+.+|||+|+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            457999999999999999999986321110           00      0111111111122 24445788899999998


Q ss_pred             hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC
Q 005908          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG  563 (670)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~  563 (670)
                      .|...  ...+++.+|++|+|+|++++.+.+....|..... .      ++|+++|+||+|+.... ..+..+++.+.++
T Consensus        85 dF~~e--v~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~------~ipiIvviNKiDl~~a~-~~~v~~el~~~lg  154 (600)
T 2ywe_A           85 DFSYE--VSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q------DLVIIPVINKIDLPSAD-VDRVKKQIEEVLG  154 (600)
T ss_dssp             GGHHH--HHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred             hHHHH--HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C------CCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence            88776  6778899999999999999988888777766543 2      69999999999998643 3444566777777


Q ss_pred             CC--CcEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908          564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPHL  593 (670)
Q Consensus       564 ~~--~~~~vSA~~g-~v~~l~~~l~~~~~~~~~  593 (670)
                      +.  +++++||++| |++++++.+.+.+..+..
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~  187 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIPPPKG  187 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence            64  5899999999 999999999999876553

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.64  E-value=1.3e-15  Score=164.40  Aligned_cols=153  Identities=13%  Similarity=0.131  Sum_probs=105.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP  468 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-------------------------------~t~~~~~~~~~vd~~  468 (670)
                      .+..++|+++|.+|+|||||+++|++........                               ..++.+.....+.++
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            4566999999999999999999997543221110                               112223333445554


Q ss_pred             CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCccc---H---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 005908          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVP-CLLIAS  541 (670)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~N  541 (670)
                        ...+.+||++|++.|...  +..++..+|++|+|+|++++..   |   .+..+.+..+...      ++| +|+|+|
T Consensus        94 --~~~~~iiDTPGh~~f~~~--~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~~iIvviN  163 (439)
T 3j2k_7           94 --KKHFTILDAPGHKSFVPN--MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVKHLIVLIN  163 (439)
T ss_pred             --CeEEEEEECCChHHHHHH--HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCCeEEEEee
Confidence              357889999999988776  7788899999999999998742   1   1233333333332      567 999999


Q ss_pred             CCCCCCCc-------ccHHHHHHHHHHhCCC-----CcEEeecccC-ChHHHHH
Q 005908          542 KDDLKPYT-------MAVQDSARVTQELGIE-----PPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       542 K~Dl~~~~-------~~~~~~~~~~~~~~~~-----~~~~vSA~~g-~v~~l~~  582 (670)
                      |+|+....       ...++...+.+.+++.     +++++||++| |+.++.+
T Consensus       164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            99996421       1134555566666652     5999999999 9998655

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.64  E-value=1.6e-15  Score=152.56  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=105.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCC-cccceEEEEEEcCCCceEEEEEecCChhhHhh--------h-h
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APT-TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK--------I-L  489 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~t-~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~--------~-~  489 (670)
                      ...++|+|+|.+|||||||+|+|++....... .++ ++.......+...  ...+.+|||+|...+..        + .
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            45699999999999999999999998744433 233 3333444444444  35688899999754321        0 0


Q ss_pred             chHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEe-CCCCCCCcccH-------HHHHHHHHH
Q 005908          490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS-KDDLKPYTMAV-------QDSARVTQE  561 (670)
Q Consensus       490 ~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~N-K~Dl~~~~~~~-------~~~~~~~~~  561 (670)
                      ....+++.+|++|+|+|+++...  ....+...+....... ...|.++|+| |+|+.......       ..++.+.+.
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCH--HHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCH--HHHHHHHHHHHHhCch-hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHH
Confidence            12347789999999999986222  1222223333322110 0246666666 99998532211       234456666


Q ss_pred             hCCC----CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          562 LGIE----PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       562 ~~~~----~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++..    ..+++||++| |++++|+.|.+.+..
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            6532    1289999999 999999999998865

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.63  E-value=1.8e-15  Score=164.92  Aligned_cols=160  Identities=15%  Similarity=0.185  Sum_probs=110.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCC----C---CCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERP----F---SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKE  493 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~----~---~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~  493 (670)
                      ...++|+++|.+++|||||+++|.+..    .   .....+.++.+.....+.++  ...+.+||++|++.+...  ...
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~--~~~   92 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRA--VVS   92 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHH--HHH
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHH--HHH
Confidence            346999999999999999999999876    1   11111212222222233444  367889999999888766  678


Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHh-CC--CCc
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL-GI--EPP  567 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~-~~--~~~  567 (670)
                      .+..+|++|+|+|++++.. .+..+++..+...      ++|+++|+||+|+.+....   .+++.++.+.. ++  .++
T Consensus        93 ~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPK-TQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCcc-HHHHHHHHHHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            8899999999999998543 2223333333333      6899999999999863222   34455555555 32  369


Q ss_pred             EEeecccC-ChHHHHHHHHHHHhCC
Q 005908          568 IPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       568 ~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      +++||++| |++++++.|.+.+..+
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~~~  190 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLNNA  190 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHHhhcCc
Confidence            99999999 9999999999987533

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.63  E-value=3e-16  Score=167.55  Aligned_cols=165  Identities=16%  Similarity=0.146  Sum_probs=113.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC-------CCCC--CCC-----CCCCeE--eCCcccCCceeEEEEeCCCCccch
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES-------VPEK--VPP-----VHAPTR--LPPDFYPDRVPVTIIDTSSSLENK   73 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~~~--~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~   73 (670)
                      ++.++|+++|++|+|||||+++|++..       +...  .+.     ..+.+.  ....+...+..+.||||||+++|.
T Consensus         1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (397)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence            357899999999999999999998741       1110  000     000111  112244567889999999999988


Q ss_pred             hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhcc--
Q 005908           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE--  149 (670)
Q Consensus        74 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~--  149 (670)
                      ..+..+++.+|++|+|+|+++....+...  ++..++..  ++| +++|+||+|+.+.... ....+.+..+.+.++.  
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            88889999999999999999865444332  33555554  788 7899999999752111 0122344556665542  


Q ss_pred             -CCeEEEeCcccCCC----------chHHHHHHHHHHcCC
Q 005908          150 -IETCVECSATTMIQ----------VPDVFYYAQKAVLHP  178 (670)
Q Consensus       150 -~~~~~~~SA~~~~g----------i~~l~~~i~~~~~~~  178 (670)
                       ..+++++||++|.|          +.++++.+.+.+..+
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence             24799999999775          888998888776543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.63  E-value=3.1e-16  Score=158.93  Aligned_cols=160  Identities=17%  Similarity=0.146  Sum_probs=88.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC-CCCC-------CCCCCCeEeCCccc--CCceeEEEEeCCCCcc-------c
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV-PEKV-------PPVHAPTRLPPDFY--PDRVPVTIIDTSSSLE-------N   72 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~-------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~-------~   72 (670)
                      ...++|+|+|.+|||||||+|+|++... ....       .++.+.......+.  +..+.+.+|||||+.+       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            3469999999999999999999987763 3323       22222222222232  3346899999999842       2


Q ss_pred             hhhh-------HHHhcc-------------CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC
Q 005908           73 KGKL-------NEELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (670)
Q Consensus        73 ~~~~-------~~~~~~-------------ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~  132 (670)
                      ....       ..++..             +|+++++++.+... +......+++.+..   ++|+|+|+||+|+.....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHH
Confidence            2222       344443             78999999765521 22222236666654   799999999999865322


Q ss_pred             ccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      .....+.+.......+  .+++++||+++.|++++++.+.+.+
T Consensus       162 ~~~~~~~i~~~l~~~~--i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          162 CQQFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHTT--CCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcC--CeEEcCCCCCChhHHHHHHHHhcCC
Confidence            2011122222223333  3689999999999999999988765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.63  E-value=1.3e-15  Score=163.47  Aligned_cols=166  Identities=17%  Similarity=0.130  Sum_probs=108.7

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCCC-CCCeEeCCcc---------------c--C----CceeE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPV-HAPTRLPPDF---------------Y--P----DRVPV   61 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~~-~~~~~~~~~~---------------~--~----~~~~~   61 (670)
                      ...+.++|+++|+.++|||||+++|++..   +... .+++ .........+               .  .    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            34667999999999999999999999643   2222 1211 1111000000               0  1    12789


Q ss_pred             EEEeCCCCccchhhhHHHhccCCEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh
Q 005908           62 TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (670)
Q Consensus        62 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~  137 (670)
                      .||||||+++|...+...+..+|++|+|+|+++.    ++.+.+.     .++... ..|+++|+||+|+.+........
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~~~-~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-----ALQIIG-QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-----HHHHHT-CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-----HHHHcC-CCcEEEEEECccCCCHHHHHHHH
Confidence            9999999998887777888899999999999864    3444332     233332 36899999999997643210111


Q ss_pred             hhhhHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908          138 EVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      +.+..+.... ....+++++||++|.||+++++.+.+.+..+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence            2233333321 12247999999999999999999998776543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.62  E-value=8.3e-15  Score=157.15  Aligned_cols=166  Identities=16%  Similarity=0.177  Sum_probs=111.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----ceEEE
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTL  475 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~---~~~~~--t~~~~~~~~~vd~-------------~--g~----~~~~~  475 (670)
                      .+..++|+++|.+++|||||+++|++....   ....+  |+...+....+..             +  |.    ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            356799999999999999999999965322   11112  4433333222211             1  11    25788


Q ss_pred             EEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---H
Q 005908          476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---V  552 (670)
Q Consensus       476 i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~  552 (670)
                      +||++|++.|...  ....+..+|++|+|+|++++....+..+.+..+....     ..|+++|+||+|+.+....   .
T Consensus        87 iiDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           87 FIDAPGHEALMTT--MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEECSSHHHHHHH--HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEECCChHHHHHH--HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccCCCHHHHHHHH
Confidence            9999999888765  6777889999999999997642222333333333331     3689999999999874322   2


Q ss_pred             HHHHHHHHHh--CCCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908          553 QDSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       553 ~~~~~~~~~~--~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      +++.++.+..  ...+++++||++| |+++|++.|.+.+..+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence            3333443331  1236999999999 99999999998776543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.62  E-value=8.1e-16  Score=149.26  Aligned_cols=164  Identities=14%  Similarity=0.060  Sum_probs=101.3

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhhhH
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLN   77 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~   77 (670)
                      ...+..+|+|+|++|||||||+|+|++..+.....++.+.+.....+...+ .+.+|||||+..          +.....
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            345678999999999999999999998775433333233322111111112 588999999753          122233


Q ss_pred             HHh---ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908           78 EEL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV  154 (670)
Q Consensus        78 ~~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (670)
                      .++   +.++++++|+|+++..+....  .+...+...  ++|+++|+||+|+....+.......+..++.+.+....++
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~  176 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  176 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence            344   578999999999887665432  234444444  7899999999998653211001123334444444334689


Q ss_pred             EeCcccCCCchHHHHHHHHHHc
Q 005908          155 ECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       155 ~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ++||+++.|++++++.+.+.+.
T Consensus       177 ~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          177 TFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHC
T ss_pred             EEeecCCCCHHHHHHHHHHHHh
Confidence            9999999999999999887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.62  E-value=1.2e-15  Score=163.43  Aligned_cols=163  Identities=15%  Similarity=0.115  Sum_probs=114.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC--------CCCCC--CCC-----CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER--------PFSEN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~--------~~~~~--~~~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      +..++|+++|.+|+|||||+++|++.        .+...  .+.     +.+..+....+.+......+.+||++|++.|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45699999999999999999999973        11110  000     1111111122233334467889999999888


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ  560 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~  560 (670)
                      ...  +..++..+|++|+|+|++++.. .+..+++..+...      ++| +++|+||+|+.+....    .++..++.+
T Consensus        89 ~~~--~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  159 (405)
T 2c78_A           89 IKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN  159 (405)
T ss_dssp             HHH--HHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence            766  6788899999999999999865 4455566555544      678 8999999999853221    335666777


Q ss_pred             HhCC----CCcEEeecccC-C------------------hHHHHHHHHHHHhCCC
Q 005908          561 ELGI----EPPIPVSMKSK-D------------------LNNVFSRIIWAAEHPH  592 (670)
Q Consensus       561 ~~~~----~~~~~vSA~~g-~------------------v~~l~~~l~~~~~~~~  592 (670)
                      .+++    .+++++||++| |                  +.+|++.+.+.+..+.
T Consensus       160 ~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~  214 (405)
T 2c78_A          160 QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV  214 (405)
T ss_dssp             HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence            7775    46999999999 8                  7788888888765443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.62  E-value=2.5e-16  Score=165.70  Aligned_cols=99  Identities=19%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc-cchhhhhhHHHHH
Q 005908           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQ  146 (670)
Q Consensus        68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~  146 (670)
                      ..+.|...+..+.+.+|++++|+|++++.      ..|...+++...++|+++|+||+|+...... ....+.+....+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~  128 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQ  128 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHH
Confidence            35678888889999999999999998853      2477777776668999999999999754321 0011222233444


Q ss_pred             hcc-CCeEEEeCcccCCCchHHHHHHH
Q 005908          147 FRE-IETCVECSATTMIQVPDVFYYAQ  172 (670)
Q Consensus       147 ~~~-~~~~~~~SA~~~~gi~~l~~~i~  172 (670)
                      .+. ..+++.+||++|.|++++++.+.
T Consensus       129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~  155 (368)
T 3h2y_A          129 LGLKPEDVFLISAAKGQGIAELADAIE  155 (368)
T ss_dssp             TTCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCCcccEEEEeCCCCcCHHHHHhhhh
Confidence            442 12689999999999998887543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.62  E-value=5e-16  Score=167.76  Aligned_cols=158  Identities=18%  Similarity=0.156  Sum_probs=106.2

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcC--CCCCC------------------------------CCCCCCCeEeCCcccC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK------------------------------VPPVHAPTRLPPDFYP   56 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~   56 (670)
                      .++.++|+++|++|+|||||+++|++.  .+...                              ..++. .......+..
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giT-i~~~~~~~~~   81 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT-INLTFMRFET   81 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEEC
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCce-eEeeEEEEec
Confidence            356799999999999999999999864  23211                              01110 0111234556


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHH------HHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS------YWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~------~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      .+..+.||||||+++|...+..+++.+|++|+|+|+++ .+|+....      .....++.. .-.|+++|+||+|+.+.
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSS
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCc
Confidence            67899999999999999889999999999999999998 66664331      122233333 12469999999999763


Q ss_pred             C--Cc--cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHHHH
Q 005908          131 H--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       131 ~--~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~~  169 (670)
                      .  +.  ....+.+..+...++.   ..+++++||++|.||.++++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1  11  0123344555555542   14799999999999986543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.3e-15  Score=170.33  Aligned_cols=155  Identities=17%  Similarity=0.130  Sum_probs=104.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--------------------------------CCCCCCeEeCCcccC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--------------------------------PPVHAPTRLPPDFYP   56 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~   56 (670)
                      .++.++|+++|++|||||||+++|++.......                                +++. .......+..
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiT-id~~~~~~~~  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT-VSICTSHFST  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTC-CSCSCCEEEC
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCee-EeeeeEEEec
Confidence            456899999999999999999999976422111                                1111 1112334456


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL---SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~---~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      .+..+.||||||+++|...+..+++.+|++|+|+|+++..   ++   .... .....+... ...|+|+|+||+|+.+.
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~l-gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASSL-GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHHc-CCCeEEEEEecccccch
Confidence            6789999999999999888889999999999999998742   10   1111 122333333 13459999999999864


Q ss_pred             CCccch---hhhhhHHHHHhcc---CCeEEEeCcccCCCchHH
Q 005908          131 HNATSL---EEVMGPIMQQFRE---IETCVECSATTMIQVPDV  167 (670)
Q Consensus       131 ~~~~~~---~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l  167 (670)
                      +.. ..   .+.+..+...++.   ..++++|||++|.||.++
T Consensus       321 ~~~-~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQ-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHH-HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHH-HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            322 12   2223334444432   247999999999999876

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.62  E-value=2.6e-15  Score=160.21  Aligned_cols=162  Identities=15%  Similarity=0.112  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCC-------CCCC--CCC-----CcccceEEEEEEcCCCceEEEEEecCChhhHhh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERP-------FSEN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK  487 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~-------~~~~--~~~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~  487 (670)
                      ..++|+++|.+|+|||||+++|++..       +...  .+.     ..+..+....+.+......+.+||++|++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            45899999999999999999999741       1100  000     011111112223333446788999999988876


Q ss_pred             hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCcc----cHHHHHHHHHHh
Q 005908          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARVTQEL  562 (670)
Q Consensus       488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~----~~~~~~~~~~~~  562 (670)
                      .  ...++..+|++|+|+|++++...+.. +++..+...      ++| +++|+||+|+.+...    ..++++++++.+
T Consensus        82 ~--~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  152 (397)
T 1d2e_A           82 N--MITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF  152 (397)
T ss_dssp             H--HHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             H--HHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence            5  67889999999999999997654433 333444433      688 789999999985222    134666777777


Q ss_pred             CC----CCcEEeecccC-C----------hHHHHHHHHHHHhCCC
Q 005908          563 GI----EPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH  592 (670)
Q Consensus       563 ~~----~~~~~vSA~~g-~----------v~~l~~~l~~~~~~~~  592 (670)
                      ++    .+++++||++| |          +.+|++.+.+.+..+.
T Consensus       153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~  197 (397)
T 1d2e_A          153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT  197 (397)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred             CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence            75    37999999997 6          8899999988776543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.62  E-value=6.7e-16  Score=147.68  Aligned_cols=129  Identities=19%  Similarity=0.270  Sum_probs=89.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (670)
                      .+.++|+|+|.+|||||||+|+|.+..+...   ..++++..+         ....+.+||++|.+.+...  +..++..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~  114 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT  114 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCC--HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHH--HHHHHHh
Confidence            5679999999999999999999999876542   122332221         2234567999998776654  4445544


Q ss_pred             ----ccEEEEEEECC-CcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCcccHHHHHHHHH
Q 005908          498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQ  560 (670)
Q Consensus       498 ----ad~vllv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  560 (670)
                          +|++++|+|++ +..++.....|+..+...... ...+.|+++|+||+|+.+.....+..+.+.+
T Consensus       115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~  183 (193)
T 2ged_A          115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES  183 (193)
T ss_dssp             HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred             hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence                89999999999 888999888888777654321 0116999999999999876554444444443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.61  E-value=1.2e-15  Score=154.64  Aligned_cols=160  Identities=14%  Similarity=0.102  Sum_probs=93.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------CCCcccceEEEEEEcCCCceEEEEEecCChh-------hHh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPEE-------GVK  486 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~--------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-------~~~  486 (670)
                      ..++|+|+|.+|||||||+|+|++.......        .+|++.......+...|....+.+|||+|..       .+.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            4699999999999999999999887655443        3455544554555555555688899999962       122


Q ss_pred             hhh-----chHhhc-------------ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908          487 KIL-----SNKEAL-------------ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (670)
Q Consensus       487 ~~~-----~~~~~~-------------~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~  548 (670)
                      .+.     +...++             ..+|+++++++.+..........+++.+..       ++|+|+|+||+|+...
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCCCH
Confidence            220     002222             237899999987753222333444454433       4899999999999764


Q ss_pred             cccH---HHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          549 TMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       549 ~~~~---~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ....   +.+.+.....++. ++.+||+++ |++++++.|.+.++
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcCCC
Confidence            3332   2334444455665 899999999 99999999988653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.61  E-value=1.1e-15  Score=167.82  Aligned_cols=129  Identities=12%  Similarity=0.049  Sum_probs=87.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------CCC-------CCcccceEEEEEEcCCCceEEEEEec
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSE---------------NYA-------PTTGEQYAVNVVDQPGGNKKTLILQE  479 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~---------------~~~-------~t~~~~~~~~~vd~~g~~~~~~i~d~  479 (670)
                      +..+|+|+|.+|||||||+|+|+......               ..+       ..++.......+..  +...+.+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence            35799999999999999999997321111               000       01111122223333  3467889999


Q ss_pred             CChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH
Q 005908          480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT  559 (670)
Q Consensus       480 ~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  559 (670)
                      +|+..+...  +..+++.+|++|+|+|++++.+.+....| ..+...      ++|+++|+||+|+.... ..+..+++.
T Consensus        90 PG~~df~~~--~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~------~iPiivviNK~Dl~~~~-~~~~l~ei~  159 (528)
T 3tr5_A           90 PGHADFTED--TYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR------HTPIMTFINKMDRDTRP-SIELLDEIE  159 (528)
T ss_dssp             CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT------TCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred             CCchhHHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc------CCCEEEEEeCCCCcccc-HHHHHHHHH
Confidence            999888776  78899999999999999998876665544 344333      69999999999997532 223344444


Q ss_pred             HHh
Q 005908          560 QEL  562 (670)
Q Consensus       560 ~~~  562 (670)
                      +.+
T Consensus       160 ~~l  162 (528)
T 3tr5_A          160 SIL  162 (528)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            433

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.61  E-value=2e-15  Score=174.09  Aligned_cols=168  Identities=17%  Similarity=0.171  Sum_probs=114.9

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCC-------CCC--CCC-----CCCCCeE--eCCcccCCceeEEEEeCCCCc
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE--KVP-----PVHAPTR--LPPDFYPDRVPVTIIDTSSSL   70 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~~--~~~-----~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~   70 (670)
                      ...++.++|+++|++++|||||+++|++..       +..  ..+     ...+.+.  ....+...+..+.||||||++
T Consensus       291 ~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          291 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred             hccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence            345678999999999999999999998741       110  000     0011111  122345567889999999999


Q ss_pred             cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR  148 (670)
Q Consensus        71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~  148 (670)
                      +|...+...++.+|++|+|+|+++....+..  .++..++..  ++| +|+|+||+|+.+.... ....+.+..+...++
T Consensus       371 dF~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          371 DYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            9988888999999999999999986543332  255556555  788 7899999999753211 012234455566554


Q ss_pred             c---CCeEEEeCcccC--------CCchHHHHHHHHHHcCC
Q 005908          149 E---IETCVECSATTM--------IQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       149 ~---~~~~~~~SA~~~--------~gi~~l~~~i~~~~~~~  178 (670)
                      .   ..+++++||++|        .||.++++.+.+.+..+
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            2   247999999999        46889999888766543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.60  E-value=1e-15  Score=161.05  Aligned_cols=149  Identities=16%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      +|+++|++|+|||||+++|+....     + .....  ..+...+..+.+|||||+++|...+...++.+|++|+|+| +
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~gi-----T-i~~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~   93 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKKGT-----S-SDITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P   93 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEEEE-----E-SSSEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCE-----E-EEeeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence            899999999999999999981111     0 11111  1244556789999999999998888889999999999999 5


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCCE-EEEEe-CCCCCCCCCccchhhhhhHHHHHhc-cCCeEEE--eCccc---CCCch
Q 005908           94 QQSTLSRLSSYWLPELRRLEIKVPI-IVAGC-KLDLRGDHNATSLEEVMGPIMQQFR-EIETCVE--CSATT---MIQVP  165 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~SA~~---~~gi~  165 (670)
                      .. ...... .+...++..  ++|. ++++| |+|+ +........+.+..+.+.++ ...++++  +||++   |.||+
T Consensus        94 ~g-~~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~  168 (370)
T 2elf_A           94 QG-LDAHTG-ECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVD  168 (370)
T ss_dssp             TC-CCHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHH
T ss_pred             CC-CcHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHH
Confidence            43 333333 366666665  6787 88999 9999 43221001123333333332 1247999  99999   99999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++++.+.+.+.
T Consensus       169 ~L~~~l~~~~~  179 (370)
T 2elf_A          169 ELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhcc
Confidence            99998887653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.59  E-value=1.8e-15  Score=159.35  Aligned_cols=98  Identities=18%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc-cchhhhhhHHHHH
Q 005908           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQ  146 (670)
Q Consensus        68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~  146 (670)
                      .++.|...+..+++.++++++|+|++++.+      .|.+.+.+...++|+++|+||+|+...... ....+.+......
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~  130 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE  130 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence            477888889899999999999999998774      255566555568999999999999764321 0011222223344


Q ss_pred             hccC-CeEEEeCcccCCCchHHHHHH
Q 005908          147 FREI-ETCVECSATTMIQVPDVFYYA  171 (670)
Q Consensus       147 ~~~~-~~~~~~SA~~~~gi~~l~~~i  171 (670)
                      .+.. .+++.+||++|.|++++++.+
T Consensus       131 ~g~~~~~v~~iSA~~g~gi~~L~~~I  156 (369)
T 3ec1_A          131 LGLCPVDVCLVSAAKGIGMAKVMEAI  156 (369)
T ss_dssp             TTCCCSEEEECBTTTTBTHHHHHHHH
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHH
Confidence            4421 268999999999999888754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.58  E-value=2.4e-15  Score=163.14  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=104.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcC--CCCCC------------------------------CCCCCCCeEeCCcccC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK------------------------------VPPVHAPTRLPPDFYP   56 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~   56 (670)
                      .++.++|+++|++|+|||||+++|++.  .+...                              ..++. .......+..
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-i~~~~~~~~~   82 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFET   82 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEEC
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcE-EEEEEEEEec
Confidence            356799999999999999999999864  12110                              01100 0001123455


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCC-EEEEEeCCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRG  129 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~  129 (670)
                      .+..+.||||||+++|...+..+++.+|++|+|+|+++..   +|+   ...+ ++..+...  ++| +|+|+||+|+.+
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~~--~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHHc--CCCeEEEEEEcccccc
Confidence            6788999999999999988899999999999999998763   221   2222 33334444  565 999999999974


Q ss_pred             CCCc--cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHH
Q 005908          130 DHNA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDV  167 (670)
Q Consensus       130 ~~~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l  167 (670)
                      ....  ....+.+..+...++.   ..+++++||++|.||.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            2111  0122334455555542   147999999999999764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.58  E-value=1.6e-15  Score=155.78  Aligned_cols=158  Identities=16%  Similarity=0.118  Sum_probs=101.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----C-CC-----------------------ccc-------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-----A-PT-----------------------TGE-------------  458 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-----~-~t-----------------------~~~-------------  458 (670)
                      ...++|+|+|.+|||||||+|+|++..+....     . |+                       +..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999998875221     1 21                       100             


Q ss_pred             ----------ceEEEEEEcCCCceEEEEEecCChh-------------hHhhhhchHhhcccccEEE-EEEECCCcccHH
Q 005908          459 ----------QYAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASCDVTI-FVYDSSDEYSWK  514 (670)
Q Consensus       459 ----------~~~~~~vd~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~ad~vl-lv~D~s~~~s~~  514 (670)
                                ...+. +..+ ....+.+||++|..             .+..+  ...+++.++.++ +|+|+++..+..
T Consensus       104 ~g~~~gi~~~~~~~~-~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~v~d~~~~~~~~  179 (299)
T 2aka_B          104 TGTNKGISPVPINLR-VYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANS  179 (299)
T ss_dssp             CSSTTCCCSCCEEEE-EEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH--HHHHHTSTTEEEEEEEESSSCGGGC
T ss_pred             cccCCCccccceEEE-EeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHH--HHHHHcCCCeEEEEEecCCcchhhh
Confidence                      00000 1111 13467789999952             33444  667888888766 799998865544


Q ss_pred             HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHH--hCCCCcEEeecccC-ChHHHHHHHHHHH
Q 005908          515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQE--LGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       515 ~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                      ....+...+...      +.|+++|+||+|+.+.... .+..+.....  .++.+++++||++| |++++++.+.+..
T Consensus       180 ~~~~~~~~~~~~------~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          180 DALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHHHHCTT------CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHHHhCCC------CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            433444444321      6899999999999864332 2211110001  12336899999999 9999999998743

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.58  E-value=1.3e-14  Score=164.28  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=85.8

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC------------------CCeEeCCcccCCceeEEEEeCCCC
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH------------------APTRLPPDFYPDRVPVTIIDTSSS   69 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~i~Dt~G~   69 (670)
                      ...+..+|+|+|+.|+|||||+++|++........+..                  ........+...++.+++|||||+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            34567899999999999999999998543321111100                  000011223345788999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                      .++...+..+++.+|++++|+|+++.......  .++..+...  ++|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            99988899999999999999998876554443  366666665  79999999999987

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.57  E-value=7e-15  Score=147.89  Aligned_cols=121  Identities=15%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc------
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK------   81 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   81 (670)
                      ++.++|+++|.+|||||||+|+|++..+  ....+++.... ....+...+..+.+|||||+.++....+.+++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP-VMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCC-EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceee-EEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4679999999999999999999999884  33333322111 22234456779999999999877655544443      


Q ss_pred             ---cCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-C--CCCEEEEEeCCCCCCCCC
Q 005908           82 ---RADAVVLTYACNQQSTLSRLSSYWLPELRRLE-I--KVPIIVAGCKLDLRGDHN  132 (670)
Q Consensus        82 ---~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~--~~pvilv~NK~Dl~~~~~  132 (670)
                         .+|++++|+|++... +......|++.++... .  ..|+++|+||+|+...+.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~  168 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE  168 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence               789999999987654 4443335777776542 2  249999999999975443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.57  E-value=5.5e-16  Score=172.83  Aligned_cols=153  Identities=20%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC------------------------------CCCCCCCeEeCCcccC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------------------VPPVHAPTRLPPDFYP   56 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~   56 (670)
                      .++.++|+|+|++|+|||||+++|++..  +...                              .+++. .......+..
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiT-id~~~~~~~~  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVT-MDVASTTFES  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCee-EEeeEEEEEe
Confidence            4567899999999999999999996431  1000                              01100 0112223444


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hH--HHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGD  130 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~  130 (670)
                      .+..+.||||||+.+|...+...++.+|++|+|+|+++..   ++  .......+..+...  ++| +|+|+||+|+.+.
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence            5678999999999999888888999999999999998642   11  11011133344444  565 9999999999753


Q ss_pred             CCccchhhhhhHHHHH----hcc---CCeEEEeCcccCCCch
Q 005908          131 HNATSLEEVMGPIMQQ----FRE---IETCVECSATTMIQVP  165 (670)
Q Consensus       131 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~SA~~~~gi~  165 (670)
                      ... ........+...    ++.   ..+++++||++|.||.
T Consensus       331 ~~~-~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          331 SED-RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CHH-HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cHH-HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            221 122222333322    231   1269999999999998

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.57  E-value=4.9e-16  Score=163.26  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCC-C-------CCCCCeEeCCccc--CCceeEEEEeCCCC-------ccc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKV-P-------PVHAPTRLPPDFY--PDRVPVTIIDTSSS-------LEN   72 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~-~-------~~~~~~~~~~~~~--~~~~~~~i~Dt~G~-------~~~   72 (670)
                      ..++|+|+|++|||||||+|+|++.. +.... +       ++.........+.  .....+.+|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            35899999999999999999987754 32221 1       1111111111222  22457999999999       555


Q ss_pred             hhhhH-------HHhccCCEE-----------EEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908           73 KGKLN-------EELKRADAV-----------VLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (670)
Q Consensus        73 ~~~~~-------~~~~~ad~i-----------i~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~  133 (670)
                      ..+..       .+++.++++           +++|++++ ..++..+...|++.+   ..++|+|+|+||+|+...+.+
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev  192 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER  192 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence            55554       666554432           35555544 455655554455554   357999999999999765433


Q ss_pred             cchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      ....+.+..++..++  .+++++||++|.| ++.|..+.+.+..
T Consensus       193 ~~~k~~i~~~~~~~~--i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          193 ERLKKRILDEIEEHN--IKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHHHTTCC---CCSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--CCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            111123344444444  3789999999998 7878777776643

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.56  E-value=1.4e-14  Score=156.32  Aligned_cols=149  Identities=19%  Similarity=0.269  Sum_probs=103.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC------------CCCCccc---------------------ceEEEEEEc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN------------YAPTTGE---------------------QYAVNVVDQ  467 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------------~~~t~~~---------------------~~~~~~vd~  467 (670)
                      +..++|+++|.+|+|||||+++|++......            ..+|++.                     +.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4569999999999999999999987542111            1122211                     112223333


Q ss_pred             CCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCC-cEEEEEeCCCCC
Q 005908          468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-PCLLIASKDDLK  546 (670)
Q Consensus       468 ~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-piilv~NK~Dl~  546 (670)
                      +  ...+.+||++|++.|...  ...++..+|++|+|+|++++.. ....+++..+...      +. |+++|+||+|+.
T Consensus       102 ~--~~~~~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~------~~~~iIvviNK~Dl~  170 (434)
T 1zun_B          102 A--KRKFIIADTPGHEQYTRN--MATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL------GIKHIVVAINKMDLN  170 (434)
T ss_dssp             S--SEEEEEEECCCSGGGHHH--HHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCEEEEEEECTTTT
T ss_pred             C--CceEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEEcCcCC
Confidence            3  457889999999988776  6778899999999999999865 3344454444433      34 699999999998


Q ss_pred             CCcc-----cHHHHHHHHHHhC--C--CCcEEeecccC-ChHHH
Q 005908          547 PYTM-----AVQDSARVTQELG--I--EPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       547 ~~~~-----~~~~~~~~~~~~~--~--~~~~~vSA~~g-~v~~l  580 (670)
                      +...     ..++..++++.++  .  .+++++||++| |++++
T Consensus       171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            6321     2345666667777  2  25899999999 99874

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.56  E-value=1.8e-14  Score=163.76  Aligned_cols=237  Identities=13%  Similarity=0.090  Sum_probs=136.0

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC--C-CC--C---------CCCeE--eCCcccCC-------ceeEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK--V-PP--V---------HAPTR--LPPDFYPD-------RVPVT   62 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~--~-~~--~---------~~~~~--~~~~~~~~-------~~~~~   62 (670)
                      ...+..+|+|+|+.|+|||||+++|+...  +...  . ++  .         .+.+.  ....+...       .+.++
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34567899999999999999999997532  1110  0 00  0         00011  01112222       38999


Q ss_pred             EEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhH
Q 005908           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP  142 (670)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~  142 (670)
                      ||||||+.+|...+..+++.+|++|+|+|+++........  ++..+...  ++|+++|+||+|+...+    ..+..+.
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~~----~~~~~~~  157 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGAN----FLKVVNQ  157 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCccccc----HHHHHHH
Confidence            9999999999889999999999999999999876655543  33444444  79999999999987643    3455566


Q ss_pred             HHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCCCC-C---CCc-----cccccccHHHHHHH-HHHHHHhCCC----
Q 005908          143 IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTA-P---LFD-----HDEQTLKPRCVRAL-KRIFIICDHD----  208 (670)
Q Consensus       143 ~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~~-~---~~~-----~~~~~~~~~~~~~l-~ri~~~~d~~----  208 (670)
                      +...++.....+.+....+.++..+++.+......... .   .+.     ........+.+..| +.+....+..    
T Consensus       158 l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~  237 (704)
T 2rdo_7          158 IKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKY  237 (704)
T ss_pred             HHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66666532212222222233333233322222211110 0   000     00000011111112 2222211111    


Q ss_pred             -CCCCCChHHHHHHhh----------hhcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908          209 -MDGALNDAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (670)
Q Consensus       209 -~~~~l~~~el~~~q~----------~~~~~~l~~~~~~~l~~~l~~~~~~~~~~  252 (670)
                       .+..++.+++...-+          -+|++++...+++.|++.+.+++|+|.+.
T Consensus       238 l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~  292 (704)
T 2rdo_7          238 LGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDV  292 (704)
T ss_pred             hcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhc
Confidence             133455665554333          25788899999999999999999998764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.56  E-value=1.1e-14  Score=159.51  Aligned_cols=150  Identities=15%  Similarity=0.104  Sum_probs=98.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------------------CCCCcccceEEEEEEcCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------------------------------YAPTTGEQYAVNVVDQPG  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-------------------------------~~~t~~~~~~~~~vd~~g  469 (670)
                      +..+||+++|.+|+|||||+|+|++......                               ....++.+.....++.  
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence            4679999999999999999999986521110                               0011112222333444  


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHH------HHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK------RTKELLVEVARLGEDSGYGVPCLLIASKD  543 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~------~~~~~~~~i~~~~~~~~~~~piilv~NK~  543 (670)
                      ....+.+||++|++.|...  +..++..+|++|+|+|++++.++.      ........+... .    ..|+|+|+||+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~--~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~----~~~iIvviNK~  181 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G----IHNLIIAMNKM  181 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHH--HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T----CCCEEEEEECG
T ss_pred             CCceEEEEECCCcHHHHHH--HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C----CCcEEEEEECc
Confidence            3467889999999988876  788899999999999999975432      222222222222 1    25699999999


Q ss_pred             CCCCCcc-c----HHHHHHHHHHhCCC----CcEEeecccC-ChHH
Q 005908          544 DLKPYTM-A----VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (670)
Q Consensus       544 Dl~~~~~-~----~~~~~~~~~~~~~~----~~~~vSA~~g-~v~~  579 (670)
                      |+.+... .    .+++..+.+.+++.    +++++||++| |+++
T Consensus       182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            9986321 1    33444555555542    5899999999 9874

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.56  E-value=1.7e-15  Score=172.19  Aligned_cols=235  Identities=12%  Similarity=0.073  Sum_probs=143.5

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHc--CCCCCC---CC--CCC---------CCeE--eCCcccCCceeEEEEeCCCC
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAAT--ESVPEK---VP--PVH---------APTR--LPPDFYPDRVPVTIIDTSSS   69 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~--~~~~~~---~~--~~~---------~~~~--~~~~~~~~~~~~~i~Dt~G~   69 (670)
                      ...+..+|+|+|++|+|||||+|+|+.  +.+...   .+  .+.         +.+.  ....+...++.++||||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            345678999999999999999999985  222100   00  000         0000  11123345788999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (670)
                      .++...+..+++.+|++|+|+|+++..+.....  ++..+...  ++|+++|+||+|+...+    ..+.++.+...++.
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~~----~~~~~~~l~~~l~~  157 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGAN----FEYSVSTLHDRLQA  157 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHHHCC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCccccc----hHHHHHHHHHHhCC
Confidence            999888999999999999999999887776654  34455555  89999999999997642    33445555555542


Q ss_pred             --CCeEEEeCcccCCCchHHHHHHHHHHcCCC-C--CCCcc-cc-ccc---cHHHHHHH-HHHHHHhCC-----CCCCCC
Q 005908          150 --IETCVECSATTMIQVPDVFYYAQKAVLHPT-A--PLFDH-DE-QTL---KPRCVRAL-KRIFIICDH-----DMDGAL  213 (670)
Q Consensus       150 --~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~-~--~~~~~-~~-~~~---~~~~~~~l-~ri~~~~d~-----~~~~~l  213 (670)
                        ....+++|+  +.|+..+++.+........ .  ..+.. .. ...   .+..+..+ +.+....+.     ..+..+
T Consensus       158 ~~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~  235 (693)
T 2xex_A          158 NAAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEI  235 (693)
T ss_dssp             CEEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCC
T ss_pred             CceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCC
Confidence              123678888  6667766655432221111 0  00000 00 001   11112222 111111000     013346


Q ss_pred             ChHHHHHHhh----------hhcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908          214 NDAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (670)
Q Consensus       214 ~~~el~~~q~----------~~~~~~l~~~~~~~l~~~l~~~~~~~~~~  252 (670)
                      +.+++...-+          -+|++++...+++.+++.+.+++|+|.+.
T Consensus       236 ~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~  284 (693)
T 2xex_A          236 SVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDV  284 (693)
T ss_dssp             CHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGS
T ss_pred             CHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhc
Confidence            6666554332          26888999999999999999999998763

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.56  E-value=2.2e-14  Score=162.97  Aligned_cols=126  Identities=15%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCC--CC-C--CC---------CCCeE--eCCcccCCceeEE
Q 005908            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPE--KV-P--PV---------HAPTR--LPPDFYPDRVPVT   62 (670)
Q Consensus         1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~--~~-~--~~---------~~~~~--~~~~~~~~~~~~~   62 (670)
                      |+-.......+..+|+|+|++|+|||||+++|+...  +..  .. .  ..         .+.+.  ....+...++.++
T Consensus         1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~   80 (691)
T 1dar_A            1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN   80 (691)
T ss_dssp             CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred             CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence            443334445667899999999999999999998421  100  00 0  00         00000  1112334578999


Q ss_pred             EEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      ||||||+.+|...+..+++.+|++|+|+|+++..+..... .|. .+...  ++|+++|+||+|+...
T Consensus        81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~-~~~~~--~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEKY--KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred             EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHH-HHHHc--CCCEEEEEECCCcccC
Confidence            9999999999999999999999999999999988777654 244 45554  8999999999998754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.55  E-value=1.7e-14  Score=163.95  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=109.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEe--------CCccc------------------CCc---
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRL--------PPDFY------------------PDR---   58 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~--------~~~~~------------------~~~---   58 (670)
                      .+.++|+|+|.+|+|||||+|+|++..+...  .|++...+.+        ...+.                  ..+   
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            3578999999999999999999999875432  3433211110        00000                  000   


Q ss_pred             ---------------------------eeEEEEeCCCCccc---hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHH
Q 005908           59 ---------------------------VPVTIIDTSSSLEN---KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE  108 (670)
Q Consensus        59 ---------------------------~~~~i~Dt~G~~~~---~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~  108 (670)
                                                 ..+.||||||....   ...+..+++.+|++|+|+|++++.+..+.. .|...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence                                       46999999997652   344557889999999999999888877765 36555


Q ss_pred             HHhcCCCCCEEEEEeCCCCCCCCCccchhh---------hhhH-H---HHHh-c------cCCeEEEeCcc---------
Q 005908          109 LRRLEIKVPIIVAGCKLDLRGDHNATSLEE---------VMGP-I---MQQF-R------EIETCVECSAT---------  159 (670)
Q Consensus       109 l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~---------~~~~-~---~~~~-~------~~~~~~~~SA~---------  159 (670)
                      +...  +.|+++|+||+|+...... +.++         .+.. +   ...+ +      ...++++|||+         
T Consensus       226 l~~~--~~~iiiVlNK~Dl~~~~~~-~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          226 IKGR--GLTVFFLVNAWDQVRESLI-DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTTS--CCCEEEEEECGGGGGGGCS-STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             HHhh--CCCEEEEEECccccccccc-ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            6544  7899999999998654311 1100         1111 1   1111 1      11268999999         


Q ss_pred             -----cCCCchHHHHHHHHHHc
Q 005908          160 -----TMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       160 -----~~~gi~~l~~~i~~~~~  176 (670)
                           +|.|++++++.+.+.+.
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHH
T ss_pred             chhhhhccCHHHHHHHHHHHHH
Confidence                 99999999999988765

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.55  E-value=2.9e-14  Score=156.61  Aligned_cols=117  Identities=12%  Similarity=0.066  Sum_probs=82.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------CCCC---------CCeE--eCCcccCCceeEEEEeCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPVH---------APTR--LPPDFYPDRVPVTIIDTS   67 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-----------~~~~---------~~~~--~~~~~~~~~~~~~i~Dt~   67 (670)
                      .+..+|+|+|++|+|||||+++|+...-....           ..+.         +.+.  ....+...++.++|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            45689999999999999999999864211000           0000         0000  111234567899999999


Q ss_pred             CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      |+.+|...+..+++.+|++|+|+|+++.......  .+...+...  ++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccc
Confidence            9999988888999999999999999886543322  244555444  7999999999999754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.55  E-value=1.2e-14  Score=149.23  Aligned_cols=120  Identities=15%  Similarity=0.144  Sum_probs=93.2

Q ss_pred             CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHh--cCCCCCEEEEEe
Q 005908           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRR--LEIKVPIIVAGC  123 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~--~~~~~pvilv~N  123 (670)
                      .+++++.+|||+|++.+...+..++++++++|||||++          +..++++... |+..+..  ...++|++|++|
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEE
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEE
Confidence            35678999999999999999999999999999999998          6788888875 5555533  235899999999


Q ss_pred             CCCCCCCC---------------CccchhhhhhHHHHHh------c------------------cCCeEEEeCcccCCCc
Q 005908          124 KLDLRGDH---------------NATSLEEVMGPIMQQF------R------------------EIETCVECSATTMIQV  164 (670)
Q Consensus       124 K~Dl~~~~---------------~~~~~~~~~~~~~~~~------~------------------~~~~~~~~SA~~~~gi  164 (670)
                      |+|+...+               .. ..++....+..++      .                  ....+++|||+++.||
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            99986421               11 2445555555666      0                  1135899999999999


Q ss_pred             hHHHHHHHHHHcC
Q 005908          165 PDVFYYAQKAVLH  177 (670)
Q Consensus       165 ~~l~~~i~~~~~~  177 (670)
                      +.+|+.+.+.++.
T Consensus       316 ~~vF~~v~~~Il~  328 (340)
T 4fid_A          316 KRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887663

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.55  E-value=1.4e-14  Score=146.44  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=83.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH-------HH-
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------EE-   79 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~-   79 (670)
                      .+.++|+++|.+|||||||+|+|++..+..  ..+++.... ....+...+..+.+|||||+.++.....       .+ 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC-EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceee-EEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            457999999999999999999999988532  233322111 2233455678999999999976543222       12 


Q ss_pred             -hccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCC--CCEEEEEeCCCCCCCCC
Q 005908           80 -LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIK--VPIIVAGCKLDLRGDHN  132 (670)
Q Consensus        80 -~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~--~pvilv~NK~Dl~~~~~  132 (670)
                       .+.+|++|+|+|++.. ++......|+..+... ..+  +|+++|+||+|+...+.
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence             3479999999998653 3444433577777654 222  69999999999976543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.54  E-value=5.6e-15  Score=160.67  Aligned_cols=157  Identities=16%  Similarity=0.120  Sum_probs=91.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC------------------CCCC---------CCCeE--eCCcccCCc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------VPPV---------HAPTR--LPPDFYPDR   58 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~------------------~~~~---------~~~~~--~~~~~~~~~   58 (670)
                      ++.++|+++|++++|||||+++|+...  +...                  .+..         .+.+.  ....+...+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            567899999999999999999997521  2100                  0000         00010  112344567


Q ss_pred             eeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hHHH---HHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCC
Q 005908           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLSR---LSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH  131 (670)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~---~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~  131 (670)
                      ..+.||||||+++|...+...++.+|++|+|+|+++..   +|+.   ..+ .+..+...  ++| +|+|+||+|+....
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e-~l~~~~~~--~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHH-HHHHHHHc--CCCEEEEEEECccCCCcc
Confidence            88999999999999888889999999999999998862   2221   111 22223333  677 99999999996421


Q ss_pred             C--c--cchhhhhhHHHHHh-cc----CCeEEEeCcccCCCchHHHH
Q 005908          132 N--A--TSLEEVMGPIMQQF-RE----IETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       132 ~--~--~~~~~~~~~~~~~~-~~----~~~~~~~SA~~~~gi~~l~~  169 (670)
                      .  .  ....+.+..+...+ +.    ..+++++||++|.||.++++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence            1  0  01122344444444 21    13699999999999988763

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.54  E-value=2.1e-14  Score=163.30  Aligned_cols=164  Identities=16%  Similarity=0.181  Sum_probs=108.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCccc--------ceEEEEE--------------------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGE--------QYAVNVV--------------------------  465 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~--------~~~~~~v--------------------------  465 (670)
                      +..++|+|+|.+|+|||||+|+|++..+.++.. |+|..        .......                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            456999999999999999999999988766544 44421        1111111                          


Q ss_pred             -------------------EcCCCc--eEEEEEecCChhhHhh-hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHH
Q 005908          466 -------------------DQPGGN--KKTLILQEIPEEGVKK-ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV  523 (670)
Q Consensus       466 -------------------d~~g~~--~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i  523 (670)
                                         ..|...  ..+.+|||+|...... ...+..+++.+|++|+|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                               111000  2477899999755332 112567889999999999999988877665554444


Q ss_pred             HHhcCCCCCCCcEEEEEeCCCCCCCccc-H----------HHHHH-HHHHh----C-------CCCcEEeecc-------
Q 005908          524 ARLGEDSGYGVPCLLIASKDDLKPYTMA-V----------QDSAR-VTQEL----G-------IEPPIPVSMK-------  573 (670)
Q Consensus       524 ~~~~~~~~~~~piilv~NK~Dl~~~~~~-~----------~~~~~-~~~~~----~-------~~~~~~vSA~-------  573 (670)
                      ...      +.|+++|+||+|+...... .          ..+.. +...+    +       ..++++|||+       
T Consensus       227 ~~~------~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~  300 (695)
T 2j69_A          227 KGR------GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRL  300 (695)
T ss_dssp             TTS------CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred             Hhh------CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhc
Confidence            322      5889999999998753200 0          01111 11111    1       1368999999       


Q ss_pred             -------cC-ChHHHHHHHHHHHhC
Q 005908          574 -------SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       574 -------~g-~v~~l~~~l~~~~~~  590 (670)
                             +| |++++++.+.+.+..
T Consensus       301 ~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          301 KNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             cCchhhhhccCHHHHHHHHHHHHHH
Confidence                   99 999999999887753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.54  E-value=1.8e-14  Score=149.15  Aligned_cols=161  Identities=16%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CCC---CCeEeC------------------------------
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP----PVH---APTRLP------------------------------   51 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~----~~~---~~~~~~------------------------------   51 (670)
                      .....+|+|+|++|||||||+|+|++..+.....    ...   ..++..                              
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3456799999999999999999999988632211    000   011100                              


Q ss_pred             --------C---------------cccCCceeEEEEeCCCCcc-------------chhhhHHHhccCCEEEEEEECCCh
Q 005908           52 --------P---------------DFYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVLTYACNQQ   95 (670)
Q Consensus        52 --------~---------------~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~d~~~~   95 (670)
                              .               ........+.+|||||...             +......+++.+|++++|+|.++.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                    0               0112346799999999864             334556789999999999997433


Q ss_pred             h-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-CeEEEeCcc---c---CCCchHH
Q 005908           96 S-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECSAT---T---MIQVPDV  167 (670)
Q Consensus        96 ~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~SA~---~---~~gi~~l  167 (670)
                      . ...... .+...+...  ++|+++|+||+|+......  .   ...+...+... ..++++|+.   +   +.|+.++
T Consensus       181 ~~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~--~---~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l  252 (315)
T 1jwy_B          181 DLANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKGTD--A---MEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRES  252 (315)
T ss_dssp             CSTTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSSCC--C---HHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHH
T ss_pred             chhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcchH--H---HHHHhCCCccCCCCeEEEecCChhhhccCCCHHHH
Confidence            2 111111 255555444  7999999999999765431  1   11111211111 245555554   5   7889999


Q ss_pred             HHHHHHHHcC
Q 005908          168 FYYAQKAVLH  177 (670)
Q Consensus       168 ~~~i~~~~~~  177 (670)
                      ++.+.+.+..
T Consensus       253 ~~~~~~~~~~  262 (315)
T 1jwy_B          253 LKSEILYFKN  262 (315)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9988877654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.54  E-value=2.2e-14  Score=159.23  Aligned_cols=159  Identities=14%  Similarity=0.154  Sum_probs=103.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------C------CceEEEEEecCChhhH
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------G------GNKKTLILQEIPEEGV  485 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~----------g------~~~~~~i~d~~g~~~~  485 (670)
                      ..++|+|+|.+|+|||||+++|.+..+.......++.......+...          +      ....+.+|||+|++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            35799999999999999999999865543222111111111222211          0      1125789999999988


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc--------------c
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--------------A  551 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~  551 (670)
                      ..+  ...+++.+|++|+|+|++++..-+....| ..+...      ++|+++|+||+|+.....              .
T Consensus        84 ~~~--~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~~------~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           84 TTL--RKRGGALADLAILIVDINEGFKPQTQEAL-NILRMY------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             TTS--BCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHHT------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHH--HHHHHhhCCEEEEEEECCCCccHhHHHHH-HHHHHc------CCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            877  66788999999999999995332222222 233332      699999999999964211              0


Q ss_pred             -------HHHHHHHH---HHhCC--------------CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          552 -------VQDSARVT---QELGI--------------EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       552 -------~~~~~~~~---~~~~~--------------~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                             .+...++.   ...++              .|++++||++| |++++++++...+.
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                   00111111   12222              26999999999 99999999998765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.54  E-value=3.1e-14  Score=164.28  Aligned_cols=162  Identities=13%  Similarity=0.075  Sum_probs=111.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCC-------CCC--CCC-----CCcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERP-------FSE--NYA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~-------~~~--~~~-----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      .+..++|+++|.+|+|||||+++|++..       +..  ..+     .+.+..+....+.+.+....+.+||++|++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4567999999999999999999998741       100  000     11111111111223334567889999999998


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ  560 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~  560 (670)
                      ...  +..++..+|++|+|+|++++...+ ..+++..+...      ++| +|+|+||+|+.+....    .+++.++.+
T Consensus       373 ~~~--mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk  443 (1289)
T 3avx_A          373 VKN--MITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS  443 (1289)
T ss_dssp             HHH--HHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence            776  778899999999999999975533 44455555443      688 7899999999863221    345667777


Q ss_pred             HhCC----CCcEEeecccC-C--------hHHHHHHHHHHHhC
Q 005908          561 ELGI----EPPIPVSMKSK-D--------LNNVFSRIIWAAEH  590 (670)
Q Consensus       561 ~~~~----~~~~~vSA~~g-~--------v~~l~~~l~~~~~~  590 (670)
                      .+++    .+++++||++| +        +.++++.|.+.+..
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            7775    36999999998 4        78888888876653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.54  E-value=2e-14  Score=149.66  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=89.9

Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhc--CCCCCEEEEEeC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGCK  124 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK  124 (670)
                      +++.+.+|||+|++.+...+..++++++++|||||+++          ..++++... |+..+...  ..++|+|||+||
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK  269 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNK  269 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEEC
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEEC
Confidence            46789999999999999999999999999999999999          567888775 66666542  358999999999


Q ss_pred             CCCCCCC---------------CccchhhhhhHHHH-H---h-----ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          125 LDLRGDH---------------NATSLEEVMGPIMQ-Q---F-----REIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       125 ~Dl~~~~---------------~~~~~~~~~~~~~~-~---~-----~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      +|+...+               .+ ..++. ..++. .   +     .....+++|||++|.||.++|+++.+.+.
T Consensus       270 ~DL~~~ki~~~~l~~~fp~~~g~~-~~~e~-~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          270 KDLFEEKIKKSPLTICYPEYAGSN-TYEEA-AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             HHHHHHHHTTSCGGGTCTTCCSCS-CHHHH-HHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCchhhhccccchhhcccccCCCC-CHHHH-HHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9985321               12 23333 33333 1   1     11236899999999999999999988775

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.2e-14  Score=160.35  Aligned_cols=151  Identities=16%  Similarity=0.165  Sum_probs=102.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP  468 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-------------------------------~t~~~~~~~~~vd~~  468 (670)
                      .+..++|+++|.+|||||||+|+|++........                               +.++.+.....+.++
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            3557999999999999999999999774433221                               111112222334444


Q ss_pred             CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cH---HHHHHHHHHHHHhcCCCCCC-CcEEEEEe
Q 005908          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SW---KRTKELLVEVARLGEDSGYG-VPCLLIAS  541 (670)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~---~~~~~~~~~i~~~~~~~~~~-~piilv~N  541 (670)
                        ...+.+||++|++.+...  +..+++.+|++|+|+|++++.   +|   ......+..+...      + .|+|+|+|
T Consensus       244 --~~~~~iiDTPG~e~f~~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l------gi~~iIVVvN  313 (611)
T 3izq_1          244 --RANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL------GIHNLIIAMN  313 (611)
T ss_dssp             --SCEEEEEECCSSSCHHHH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT------TCCEEEEEEE
T ss_pred             --CceEEEEECCCCcccHHH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc------CCCeEEEEEe
Confidence              457888999999888776  778899999999999998752   11   1122222222222      3 45999999


Q ss_pred             CCCCCCCccc-----HHHHHHHHHHhCC----CCcEEeecccC-ChHHH
Q 005908          542 KDDLKPYTMA-----VQDSARVTQELGI----EPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       542 K~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l  580 (670)
                      |+|+.+....     ......+...+++    .+++++||++| |+.++
T Consensus       314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            9999863211     3445555666665    36899999999 99876

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.53  E-value=6.9e-15  Score=158.80  Aligned_cols=151  Identities=14%  Similarity=0.170  Sum_probs=102.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-----------------------------CCCcccceEEEEEEcCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENY-----------------------------APTTGEQYAVNVVDQPG  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~vd~~g  469 (670)
                      +..++|+++|.+|+|||||+++|++.  .+....                             ...++.+.....++.+ 
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence            45689999999999999999999864  221100                             0111112222234443 


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHH-------HHHHHHhcCCCCCC-CcEEEEEe
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-------LVEVARLGEDSGYG-VPCLLIAS  541 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~-------~~~i~~~~~~~~~~-~piilv~N  541 (670)
                       ...+.+||++|++.|...  +..++..+|++|+|+|+++ .+|+....|       ...+...      + .|+++|+|
T Consensus        83 -~~~~~iiDtpG~~~f~~~--~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~------~~~~iivviN  152 (435)
T 1jny_A           83 -KYFFTIIDAPGHRDFVKN--MITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM------GLDQLIVAVN  152 (435)
T ss_dssp             -SCEEEECCCSSSTTHHHH--HHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT------TCTTCEEEEE
T ss_pred             -CeEEEEEECCCcHHHHHH--HHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc------CCCeEEEEEE
Confidence             457889999999998876  7788999999999999999 566644332       2222222      3 46999999


Q ss_pred             CCCCCCCc-------ccHHHHHHHHHHhCC----CCcEEeecccC-ChHHHHH
Q 005908          542 KDDLKPYT-------MAVQDSARVTQELGI----EPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       542 K~Dl~~~~-------~~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l~~  582 (670)
                      |+|+.+..       ...++++++++.+++    .+++++||++| |+.++++
T Consensus       153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            99998621       124567777777774    35999999999 9986543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.53  E-value=6.2e-16  Score=167.41  Aligned_cols=155  Identities=14%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..++|+++|.+++|||||+++|.+..+.....++++.......+.+++  ..+.+||++|++.|..+  +...+..+|++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~--~~~~~~~aD~a   78 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSM--RARGAQATDIV   78 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTS--BCSSSBSCSSE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHH--HHHHHhhCCEE
Confidence            457999999999999999999998655433323222222222344443  35678999999988887  67788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc--cHHHH---HHHHHHhC-CCCcEEeecccC
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDS---ARVTQELG-IEPPIPVSMKSK  575 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~---~~~~~~~~-~~~~~~vSA~~g  575 (670)
                      ++|+|++++...+. ...+..+...      +.|+++++||+|+.....  .....   ..++..++ ..+++++||++|
T Consensus        79 ILVVda~~g~~~qT-~e~l~~~~~~------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG  151 (501)
T 1zo1_I           79 VLVVAADDGVMPQT-IEAIQHAKAA------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG  151 (501)
T ss_dssp             EEEEETTTBSCTTT-HHHHHHHHHT------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred             EEEeecccCccHHH-HHHHHHHHhc------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence            99999998533222 2222333332      699999999999975211  11110   00111222 136999999999


Q ss_pred             -ChHHHHHHHHHH
Q 005908          576 -DLNNVFSRIIWA  587 (670)
Q Consensus       576 -~v~~l~~~l~~~  587 (670)
                       |++++++.+...
T Consensus       152 ~gI~eLle~I~~~  164 (501)
T 1zo1_I          152 TGIDELLDAILLQ  164 (501)
T ss_dssp             TTCTTHHHHTTTT
T ss_pred             cCcchhhhhhhhh
Confidence             999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.52  E-value=5.3e-14  Score=136.37  Aligned_cols=160  Identities=12%  Similarity=0.051  Sum_probs=97.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChh----------hHhhh-h
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKI-L  489 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----------~~~~~-~  489 (670)
                      ....+|+|+|++|||||||+|+|++..+.....++.+.......+...+   ...+||++|..          .+... .
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4568999999999999999999999874333334443333223333332   34568888863          22221 0


Q ss_pred             chHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhCC-C
Q 005908          490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELGI-E  565 (670)
Q Consensus       490 ~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~-~  565 (670)
                      ........++++++++|++++.++... .....+...      +.|+++|+||+|+......   ...+..++...+. .
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            011223578999999999987665321 222222222      6899999999998763222   2344444444442 2


Q ss_pred             CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          566 PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       566 ~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      +++++||+++ |++++++.|.+.+..
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            4789999999 999999999987753

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.52  E-value=2.3e-14  Score=146.79  Aligned_cols=120  Identities=13%  Similarity=0.139  Sum_probs=90.2

Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRR--LEIKVPIIVAGCK  124 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK  124 (670)
                      +++++.+|||+|++.+...+..++++++++|+|||++          +..++++... |+..+..  ...++|++|++||
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence            5678999999999999999999999999999999665          5677777764 5555543  2358999999999


Q ss_pred             CCCCCCC----------------CccchhhhhhHHHHHhcc-------CCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          125 LDLRGDH----------------NATSLEEVMGPIMQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       125 ~Dl~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      +|+...+                .+ +.++....+...+..       ...+++|||+++.||+++|+.+.+.++..
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~-~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQR-DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSS-CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhccchHhhhchhccCCCC-CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            9986532                22 334443443333321       12578999999999999999999887643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.52  E-value=4.3e-15  Score=156.04  Aligned_cols=157  Identities=13%  Similarity=0.120  Sum_probs=82.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------CCcccceEEEEEEcCCCceEEEEEecCCh-------hh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA---------PTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EG  484 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~---------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-------~~  484 (670)
                      ...++|+|+|++|||||||+|+|++........         +|++.......+...|....+.+||++|.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346999999999999999999988754332211         22222222222333333457889999998       55


Q ss_pred             HhhhhchH-------hhcccc-------------cEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCC
Q 005908          485 VKKILSNK-------EALASC-------------DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKD  543 (670)
Q Consensus       485 ~~~~~~~~-------~~~~~a-------------d~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~  543 (670)
                      +..+  ..       .+++.+             |+++++++.+ +.++..+. .+++.+.     .  ++|+|+|+||+
T Consensus       115 ~~~i--~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~-----~--~~piIlV~NK~  184 (361)
T 2qag_A          115 FKTI--ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH-----N--KVNIVPVIAKA  184 (361)
T ss_dssp             -CCT--HHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC-----S---SCEEEEEECC
T ss_pred             HHHH--HHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc-----c--CCCEEEEEECC
Confidence            5554  22       444443             3455555432 33444444 3443331     1  69999999999


Q ss_pred             CCCCCcccH---HHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          544 DLKPYTMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       544 Dl~~~~~~~---~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      |+...+...   +.+.++++.++++ ++++||++| | ++.|..+.+.+.
T Consensus       185 Dl~~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          185 DTLTLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHH
Confidence            998744332   3555566666665 999999999 8 777777777664

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.51  E-value=2.5e-14  Score=155.12  Aligned_cols=150  Identities=14%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC--CCCCC----------------------CC-------CCcccceEEEEEEcCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSEN----------------------YA-------PTTGEQYAVNVVDQPG  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~----------------------~~-------~t~~~~~~~~~vd~~g  469 (670)
                      +..++|+++|.+|+|||||+|+|++.  .+...                      .+       ..++.+.....++.+ 
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~-   83 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-   83 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC-
Confidence            35689999999999999999999864  11100                      00       111111222234443 


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIASK  542 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-iilv~NK  542 (670)
                       ...+.+||++|++.|...  ...++..+|++|+|+|++++.   +|+   +..+++..+...      +.| +|+|+||
T Consensus        84 -~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~iivviNK  154 (458)
T 1f60_A           84 -KYQVTVIDAPGHRDFIKN--MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNK  154 (458)
T ss_dssp             -SEEEEEEECCCCTTHHHH--HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEEC
T ss_pred             -CceEEEEECCCcHHHHHH--HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCeEEEEEEc
Confidence             467889999999988876  778899999999999999863   221   233333333332      565 9999999


Q ss_pred             CCCCCC-cc----cHHHHHHHHHHhCC----CCcEEeecccC-ChHHH
Q 005908          543 DDLKPY-TM----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       543 ~Dl~~~-~~----~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l  580 (670)
                      +|+.+. ..    ..+++.++++.+++    .+++++||++| |+.++
T Consensus       155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999841 11    24456667777775    46999999999 98743

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.50  E-value=6.6e-14  Score=147.19  Aligned_cols=145  Identities=13%  Similarity=0.161  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      +|+++|.+|+|||||+++|+..      ..|+  +.....+.++  ...+.+||++|++.|...  ....++.+|++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~------giTi--~~~~~~~~~~--~~~i~iiDtPGh~~f~~~--~~~~~~~aD~ailV   90 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK------GTSS--DITMYNNDKE--GRNMVFVDAHSYPKTLKS--LITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE------EEES--SSEEEEECSS--SSEEEEEECTTTTTCHHH--HHHHHHTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhC------CEEE--EeeEEEEecC--CeEEEEEECCChHHHHHH--HHHHHHHCCEEEEE
Confidence            8999999999999999999911      1122  2333345554  346888999999887655  56778999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcE-EEEEe-CCCCCCCcccH---HHHHHHHHHhCC--CCcEE--eeccc-
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIAS-KDDLKPYTMAV---QDSARVTQELGI--EPPIP--VSMKS-  574 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~N-K~Dl~~~~~~~---~~~~~~~~~~~~--~~~~~--vSA~~-  574 (670)
                      +| +++ .+.+..+++..+...      ++|. ++++| |+|+ +.....   ++++++.+..+.  .|+++  +||++ 
T Consensus        91 vd-~~g-~~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~  161 (370)
T 2elf_A           91 IP-PQG-LDAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK  161 (370)
T ss_dssp             EC-TTC-CCHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred             Ec-CCC-CcHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence            99 655 345566666665554      5777 88999 9999 532222   344444444432  36999  99999 


Q ss_pred             --C-ChHHHHHHHHHHHhC
Q 005908          575 --K-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       575 --g-~v~~l~~~l~~~~~~  590 (670)
                        | |++++++.|.+.+..
T Consensus       162 ~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          162 NPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             STTTTHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhhccc
Confidence              9 999999999988753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.50  E-value=3.2e-14  Score=147.28  Aligned_cols=162  Identities=15%  Similarity=0.144  Sum_probs=96.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEE------------------------------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVN------------------------------------  463 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~------------------------------------  463 (670)
                      ...++|+|+|.+|||||||+|+|++..+..... .++.....+.                                    
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            456899999999999999999999988732221 1111000000                                    


Q ss_pred             ----------------------EEEcCCCceEEEEEecCChhh-------------HhhhhchHhhcccccEEEEEEECC
Q 005908          464 ----------------------VVDQPGGNKKTLILQEIPEEG-------------VKKILSNKEALASCDVTIFVYDSS  508 (670)
Q Consensus       464 ----------------------~vd~~g~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~ad~vllv~D~s  508 (670)
                                            .+..+ ....+.+|||+|...             +...  ...+++.+|++++|+|++
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~iilvvd~~  178 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRM--VMAYIKKQNAIIVAVTPA  178 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHH--HHHHHHSTTEEEEEEEES
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHH--HHHHHcCCCeEEEEEEec
Confidence                                  01222 234677899999642             3333  677889999999999974


Q ss_pred             Ccc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHH--hCCCCcEEeeccc---C-ChHHH
Q 005908          509 DEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQE--LGIEPPIPVSMKS---K-DLNNV  580 (670)
Q Consensus       509 ~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~~vSA~~---g-~v~~l  580 (670)
                      +.. .......+...+..    .  +.|+++|+||+|+...... .+..+.....  .++.++..+||.+   + |+.++
T Consensus       179 ~~~~~~~~~~~i~~~~~~----~--~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l  252 (315)
T 1jwy_B          179 NTDLANSDALQLAKEVDP----E--GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRES  252 (315)
T ss_dssp             SSCSTTCSHHHHHHHHCS----S--CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHH
T ss_pred             CcchhhhHHHHHHHHhCC----C--CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHH
Confidence            332 11111223333322    1  6999999999999864431 2222110001  1222345556666   7 89999


Q ss_pred             HHHHHHHHhCC
Q 005908          581 FSRIIWAAEHP  591 (670)
Q Consensus       581 ~~~l~~~~~~~  591 (670)
                      ++.+.+.+...
T Consensus       253 ~~~~~~~~~~~  263 (315)
T 1jwy_B          253 LKSEILYFKNH  263 (315)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhCC
Confidence            99999888653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.50  E-value=5.4e-14  Score=148.21  Aligned_cols=153  Identities=13%  Similarity=0.158  Sum_probs=99.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC----------------CeE-eC----------------------
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA----------------PTR-LP----------------------   51 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~----------------~~~-~~----------------------   51 (670)
                      .-.+|+|+|++|||||||+|+|++..+.+...+...                ... ..                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            344999999999999999999999876433221110                000 00                      


Q ss_pred             ---------------Cc-ccCCceeEEEEeCCCCccc-------------hhhhHHHhccCCEEEEEEECCChhhHHHHH
Q 005908           52 ---------------PD-FYPDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTYACNQQSTLSRLS  102 (670)
Q Consensus        52 ---------------~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~  102 (670)
                                     .. .......+.+|||||+..+             ......+++++|++|+|+|..+......  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                           00 0122456899999998775             4566689999999999998765433321  


Q ss_pred             HHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908          103 SYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus       103 ~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                       .|...++... .+.|+|+|+||+|+...... . .+........++  .+|+++|++++.++++.+..
T Consensus       191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTD-A-VEILEGRSFKLK--YPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-S-HHHHTTSSSCCS--SCCEEECCCCHHHHHTTCCH
T ss_pred             -HHHHHHHHhcccCCCEEEEEeCCccCCCccc-H-HHHHcCcccccc--CCeEEEEECChHHhccCCCH
Confidence             2455555433 27899999999999865443 1 121222222222  36999999999988876544

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.48  E-value=1.7e-13  Score=155.07  Aligned_cols=132  Identities=15%  Similarity=0.142  Sum_probs=89.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCc----------------ccceEEEEEEcCCCceEEEEEecCChhh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------------GEQYAVNVVDQPGGNKKTLILQEIPEEG  484 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~----------------~~~~~~~~vd~~g~~~~~~i~d~~g~~~  484 (670)
                      ....+|+|+|++|+|||||+++|++........++.                +..+......+......+.+||++|+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            456799999999999999999999544322111111                1112122222222457788999999988


Q ss_pred             HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC
Q 005908          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG  563 (670)
Q Consensus       485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~  563 (670)
                      +...  ...+++.+|++++|+|++++...+ ...++..+...      ++|+++|+||+|+.  ....+..+++.+.++
T Consensus        87 f~~~--~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~------~ip~ilv~NKiD~~--~~~~~~~~~l~~~l~  154 (665)
T 2dy1_A           87 FVGE--IRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL------GLPRMVVVTKLDKG--GDYYALLEDLRSTLG  154 (665)
T ss_dssp             GHHH--HHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCEEEEEECGGGC--CCHHHHHHHHHHHHC
T ss_pred             hHHH--HHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc------cCCEEEEecCCchh--hhHHHHHHHHHHHhC
Confidence            8766  778899999999999999886644 34555555543      69999999999987  333444444544433

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.47  E-value=5.3e-14  Score=147.74  Aligned_cols=158  Identities=15%  Similarity=0.115  Sum_probs=94.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC----CC----------------------CeEe--------------
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HA----------------------PTRL--------------   50 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~----~~----------------------~~~~--------------   50 (670)
                      ...+|+|+|++|||||||+|+|++..+.+...+.    ..                      .+..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998874321111    00                      0000              


Q ss_pred             ---C--------Cc-ccCCceeEEEEeCCCCcc-------------chhhhHHHhccCCEEEE-EEECCChhhHHHHHHH
Q 005908           51 ---P--------PD-FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVL-TYACNQQSTLSRLSSY  104 (670)
Q Consensus        51 ---~--------~~-~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~-v~d~~~~~s~~~~~~~  104 (670)
                         .        .. .......+.||||||...             +..+...+++.++.+++ |+|.+....-.... .
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence               0        00 011246799999999642             23455577776665554 55654422211211 1


Q ss_pred             HHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhH--HHHHhccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908          105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP--IMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       105 ~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      ++..+...  +.|+++|+||+|+.+....  ..+.++.  +....+ ..+++++||++|.|++++++.+.+.
T Consensus       189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~-~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          189 VAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             HHHHHCTT--CTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTC-EEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHHhCcC--CCceEEEeccccccCcchh--HHHHHhCCcccccCC-ceEEEeCCcccccccccHHHHHHHH
Confidence            44444433  7899999999999764331  1111110  000011 1257889999999999999998763

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.47  E-value=1.3e-13  Score=141.27  Aligned_cols=118  Identities=11%  Similarity=0.047  Sum_probs=92.2

Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC----------CcccHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI  539 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv  539 (670)
                      +...+.+||++|++.++++  +..++++++++|+|+|++          +..++.+...|+..+.......  +.|++++
T Consensus       165 ~~v~l~iwDtgGQe~~R~~--w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~--~~~iiL~  240 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRK--WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ--NSSVILF  240 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTT--GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT--TCEEEEE
T ss_pred             eceeeEEEEcCCchhHHHH--HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC--CceEEEE
Confidence            3477889999999999998  999999999999999665          6677888888888877543323  6999999


Q ss_pred             EeCCCCCCCc-----------------ccHHHHHHHHH----------HhCCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          540 ASKDDLKPYT-----------------MAVQDSARVTQ----------ELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       540 ~NK~Dl~~~~-----------------~~~~~~~~~~~----------~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      +||+|+..++                 ...+++.++..          ..++ .+++|||+++ ||+.+|+.+.+.+.+.
T Consensus       241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            9999986533                 23555655532          2222 3789999999 9999999999988654


Q ss_pred             C
Q 005908          592 H  592 (670)
Q Consensus       592 ~  592 (670)
                      .
T Consensus       320 ~  320 (327)
T 3ohm_A          320 N  320 (327)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.47  E-value=2.3e-13  Score=149.56  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=77.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC---------------C-----CCcccc--eEEEEEEcCCCceEEEEEec
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY---------------A-----PTTGEQ--YAVNVVDQPGGNKKTLILQE  479 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~---------------~-----~t~~~~--~~~~~vd~~g~~~~~~i~d~  479 (670)
                      ...+|+|+|.+|+|||||+++|++.......               +     .+.+..  .....+..  ....+.+||+
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HDCLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TTEEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CCeEEEEEEC
Confidence            4589999999999999999999964211100               0     000111  11122333  3467889999


Q ss_pred             CChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908          480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (670)
Q Consensus       480 ~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~  548 (670)
                      +|+..+...  ...+++.+|++|+|+|++++...+ ...++..+...      ++|+++|+||+|+...
T Consensus        90 PG~~df~~~--~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~~------~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           90 PGHEDFSED--TYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRLR------DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTTT------TCCEEEEEECTTSCCS
T ss_pred             CCChhHHHH--HHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHHc------CCCEEEEEcCcCCccc
Confidence            999887765  677899999999999999875532 23333333222      6999999999999763

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.46  E-value=5.4e-13  Score=141.54  Aligned_cols=164  Identities=21%  Similarity=0.147  Sum_probs=111.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh----Hhhhh-chHhhcccc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKIL-SNKEALASC  498 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~~-~~~~~~~~a  498 (670)
                      -.|+|+|.+|||||||++++.+........+.++.......+..+ ....+.++|++|...    ...+. .....+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            468999999999999999999875433222322222334455555 345677899998632    11120 022345679


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      +.+++|+|++ ...+..+..+.+++..+...- ...|.++|+||+|+... ...+...+..+..+.. ++.+||+++ |+
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL-~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~-vi~iSA~~g~gi  312 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE-EAVKALADALAREGLA-VLPVSALTGAGL  312 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSC-EEECCTTTCTTH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCe-EEEEECCCccCH
Confidence            9999999998 556777777777766543100 04899999999999874 2233334444444554 999999999 99


Q ss_pred             HHHHHHHHHHHhCCC
Q 005908          578 NNVFSRIIWAAEHPH  592 (670)
Q Consensus       578 ~~l~~~l~~~~~~~~  592 (670)
                      +++++.|.+.+....
T Consensus       313 ~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          313 PALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999986544

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.45  E-value=7.5e-14  Score=151.80  Aligned_cols=151  Identities=15%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCC--CC----------------------CCCC-------CCcccceEEEEEEcCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERP--FS----------------------ENYA-------PTTGEQYAVNVVDQPG  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~----------------------~~~~-------~t~~~~~~~~~vd~~g  469 (670)
                      +..++|+++|.+++|||||+++|+...  +.                      ...+       ..++.+.....+.++ 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            456999999999999999999997521  11                      0000       001111112234444 


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIASK  542 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-iilv~NK  542 (670)
                       ...+.+||++|++.|...  ....+..+|++|+|+|++++.   +|+   +..+.+..+...      ++| +|+|+||
T Consensus       120 -~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp~iivviNK  190 (467)
T 1r5b_A          120 -HRRFSLLDAPGHKGYVTN--MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GINHLVVVINK  190 (467)
T ss_dssp             -SEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCSSEEEEEEC
T ss_pred             -CeEEEEEECCCcHHHHHH--HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCCEEEEEEEC
Confidence             367889999999988776  677889999999999999872   222   122222222222      577 9999999


Q ss_pred             CCCCCCc-------ccHHHHHHHHHHh-CCC-----CcEEeecccC-ChHHHH
Q 005908          543 DDLKPYT-------MAVQDSARVTQEL-GIE-----PPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       543 ~Dl~~~~-------~~~~~~~~~~~~~-~~~-----~~~~vSA~~g-~v~~l~  581 (670)
                      +|+....       ....++.++++.+ ++.     +++++||++| |+.+++
T Consensus       191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            9996421       1134566666666 542     5899999999 998765

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.45  E-value=1.7e-14  Score=160.92  Aligned_cols=159  Identities=19%  Similarity=0.178  Sum_probs=88.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP  468 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-------------------------------~~t~~~~~~~~~vd~~  468 (670)
                      .+..++|+|+|.+|+|||||+|+|++.......                               .+.++.+.....+.++
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456799999999999999999999753211110                               1112222222333333


Q ss_pred             CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cH---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 005908          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SW---KRTKELLVEVARLGEDSGYGVP-CLLIAS  541 (670)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~---~~~~~~~~~i~~~~~~~~~~~p-iilv~N  541 (670)
                        ...+.+||++|++.|...  +...+..+|++|+|+|++++.   .+   ......+..+...      ++| +|+|+|
T Consensus       254 --~~~i~iiDTPGh~~f~~~--~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvviN  323 (592)
T 3mca_A          254 --KKIYEIGDAPGHRDFISG--MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVSVN  323 (592)
T ss_dssp             -------CCEEESSSEEEEE--CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEEEE
T ss_pred             --CeEEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEEEe
Confidence              356778999999887765  677889999999999998743   11   1122223333332      565 999999


Q ss_pred             CCCCCCCc-cc----HHHHHHHH-HHhCCC----CcEEeecccC-ChH--------------HHHHHHHHHH
Q 005908          542 KDDLKPYT-MA----VQDSARVT-QELGIE----PPIPVSMKSK-DLN--------------NVFSRIIWAA  588 (670)
Q Consensus       542 K~Dl~~~~-~~----~~~~~~~~-~~~~~~----~~~~vSA~~g-~v~--------------~l~~~l~~~~  588 (670)
                      |+|+.+.. ..    ..++..+. +.+++.    +++++||++| |+.              .|++.|.+.+
T Consensus       324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            99997621 11    23333333 444653    5899999999 998              6777776643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.45  E-value=1.6e-12  Score=130.57  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=81.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhc----
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL----  495 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~----  495 (670)
                      ...++|+++|.+|||||||+|+|++..+..... ++++.......+...  ...+.+|||+|.+.+...  ...++    
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~--~~~~~~~i~  109 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYV--NHQALELIK  109 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEE--CHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccc--hHHHHHHHH
Confidence            357999999999999999999999988644333 222222333344444  357889999998665443  11222    


Q ss_pred             -----ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          496 -----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       496 -----~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                           ..+|++++|+|++..........|+..+....... ...|+++|+||+|+..
T Consensus       110 ~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          110 GFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred             HHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence                 37899999999976542233356777776554221 0249999999999964

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.44  E-value=7.4e-13  Score=140.49  Aligned_cols=158  Identities=20%  Similarity=0.196  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCccch----hhh---HHHhccC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK----GKL---NEELKRA   83 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~---~~~~~~a   83 (670)
                      -.|+|+|++|||||||+++|++.... ..++.+....... .+... ...+.+|||||+.+..    .+.   ...+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            45899999999999999999887521 1122211111111 12222 3679999999985321    121   2345679


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      +.+++|+|++ ...+.++. .|.+.+..+.   .+.|.++|+||+|+...  . .. +.+.......+  .+++.+||++
T Consensus       237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~-~~-~~l~~~l~~~g--~~vi~iSA~~  308 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE--E-AV-KALADALAREG--LAVLPVSALT  308 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H-HH-HHHHHHHHTTT--SCEEECCTTT
T ss_pred             HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH--H-HH-HHHHHHHHhcC--CeEEEEECCC
Confidence            9999999998 56666665 3666665543   26899999999998753  1 11 22222223222  2699999999


Q ss_pred             CCCchHHHHHHHHHHcCCC
Q 005908          161 MIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~  179 (670)
                      +.||+++++.+.+.+....
T Consensus       309 g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          309 GAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             CTTHHHHHHHHHHHHHTSC
T ss_pred             ccCHHHHHHHHHHHHHhcc
Confidence            9999999999999886544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.44  E-value=4.5e-14  Score=144.49  Aligned_cols=161  Identities=16%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCC--------CCCCCCeEeCC--cccCCceeEEEEeCCCC-------ccc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE-SVPEKV--------PPVHAPTRLPP--DFYPDRVPVTIIDTSSS-------LEN   72 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~-~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~-------~~~   72 (670)
                      -.++|+|+|++|||||||+++|.+. .+....        .++.....+..  ........+.+|||+|+       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999999876 333221        01111011111  11233567999999998       444


Q ss_pred             hhhhH-------HHhccC-------------CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC
Q 005908           73 KGKLN-------EELKRA-------------DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (670)
Q Consensus        73 ~~~~~-------~~~~~a-------------d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~  132 (670)
                      .....       .++++.             ++++++.+.+. .+++....   ..++....+.|+++|+||+|+...++
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence            44443       444433             33444444322 23444332   33344344689999999999976433


Q ss_pred             ccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      .....+.+..+++..+  .+++++||++| |++++|..+.+.+...
T Consensus       173 ~~~~~~~~~~~~~~~~--~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 RERLKKRILDEIEEHN--IKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHTT--CCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcC--CeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            2112345566666665  37999999999 9999999999887644

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.43  E-value=8.5e-13  Score=149.94  Aligned_cols=114  Identities=17%  Similarity=0.082  Sum_probs=81.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCC--------------------CCCCCcccceEEEEEEcCCCceEEEEEecC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE--------------------NYAPTTGEQYAVNVVDQPGGNKKTLILQEI  480 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~--------------------~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~  480 (670)
                      .+..+|+|+|.+|+|||||+++|+......                    ....|+..  ....+..  ....+.+||++
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~--~~~~~~~--~~~~i~liDTP   85 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA--AVTTCFW--KDHRINIIDTP   85 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C--CEEEEEE--TTEEEEEECCC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc--ceEEEEE--CCeEEEEEECc
Confidence            456899999999999999999998421110                    00012111  1122333  34678899999


Q ss_pred             ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      |+..+...  ...+++.+|++|+|+|++++.+++....|.. +...      ++|+++|+||+|+..
T Consensus        86 G~~df~~~--~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~------~~p~ivviNKiD~~~  143 (691)
T 1dar_A           86 GHVDFTIE--VERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY------KVPRIAFANKMDKTG  143 (691)
T ss_dssp             SSTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT------TCCEEEEEECTTSTT
T ss_pred             CccchHHH--HHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc------CCCEEEEEECCCccc
Confidence            99887766  7788999999999999999988776665543 4433      699999999999975

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.43  E-value=4.7e-13  Score=137.52  Aligned_cols=123  Identities=12%  Similarity=0.045  Sum_probs=93.3

Q ss_pred             EEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC----------CcccHHHHHHHHHHHHHhcCCCC
Q 005908          462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSG  531 (670)
Q Consensus       462 ~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~  531 (670)
                      ...++.  +...+.+||++|++.++.+  +..++++++++|+|+|++          +..++.+...|+..+....... 
T Consensus       153 ~~~~~~--~~v~l~iwDtaGQe~~R~~--w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~-  227 (340)
T 4fid_A          153 EYDFVV--KDIPFHLIDVGGQRSERKX--WVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK-  227 (340)
T ss_dssp             EEEEES--SSCEEEEEECCSCHHHHHH--HHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT-
T ss_pred             EEEEEe--eeeeeccccCCCccccccc--HHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC-
Confidence            334444  3467889999999999998  999999999999999998          6788998889988887654333 


Q ss_pred             CCCcEEEEEeCCCCCCCcc----------------cHHHHHHH-HHHh-------------------------CCCCcEE
Q 005908          532 YGVPCLLIASKDDLKPYTM----------------AVQDSARV-TQEL-------------------------GIEPPIP  569 (670)
Q Consensus       532 ~~~piilv~NK~Dl~~~~~----------------~~~~~~~~-~~~~-------------------------~~~~~~~  569 (670)
                       +.|++|++||+|+..++.                ..+++.++ .+++                         .-..+++
T Consensus       228 -~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          228 -GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             -TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             -CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence             699999999999864221                12333333 3333                         1123789


Q ss_pred             eecccC-ChHHHHHHHHHHHhC
Q 005908          570 VSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      |||+++ ||..+|+.+.+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHHHH
Confidence            999999 999999999988764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.41  E-value=1.4e-12  Score=137.15  Aligned_cols=115  Identities=12%  Similarity=0.063  Sum_probs=90.3

Q ss_pred             ceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCC----------cccHHHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 005908          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSGYGVPCLLIA  540 (670)
Q Consensus       471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~  540 (670)
                      ...+.+||++|++.++.+  +..++++++++|+|||+++          ..+|.....|+..+.......  +.|++||+
T Consensus       216 ~v~l~iwDtaGQe~~r~~--w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~--~~piiLvg  291 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRK--WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR--TISVILFL  291 (402)
T ss_dssp             TEEEEEEEECCSGGGGGG--GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS--SCCEEEEE
T ss_pred             Cccceecccchhhhhhhh--hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC--CCeEEEEE
Confidence            367889999999999998  8999999999999999999          889999999999987653322  69999999


Q ss_pred             eCCCCCCCcc-------------------------------cHHHHHHHH-----HHh-------CCCCcEEeecccC-C
Q 005908          541 SKDDLKPYTM-------------------------------AVQDSARVT-----QEL-------GIEPPIPVSMKSK-D  576 (670)
Q Consensus       541 NK~Dl~~~~~-------------------------------~~~~~~~~~-----~~~-------~~~~~~~vSA~~g-~  576 (670)
                      ||+|+...+.                               ..+++..++     +..       ....+++|||+++ |
T Consensus       292 NK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~n  371 (402)
T 1azs_C          292 NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN  371 (402)
T ss_dssp             ECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHH
T ss_pred             EChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcC
Confidence            9999854221                               023444443     221       1113679999999 9


Q ss_pred             hHHHHHHHHHHHh
Q 005908          577 LNNVFSRIIWAAE  589 (670)
Q Consensus       577 v~~l~~~l~~~~~  589 (670)
                      |.++|..+.+.+.
T Consensus       372 V~~vF~~v~~~I~  384 (402)
T 1azs_C          372 IRRVFNDCRDIIQ  384 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.40  E-value=1.9e-13  Score=144.08  Aligned_cols=153  Identities=15%  Similarity=0.158  Sum_probs=97.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCc-ccceEEEE------------------------------------
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-GEQYAVNV------------------------------------  464 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~-~~~~~~~~------------------------------------  464 (670)
                      ..++|+|+|++|||||||+|+|++..+.....++. +....+..                                    
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            34699999999999999999999988754433221 11111111                                    


Q ss_pred             -----------------EEcCCCceEEEEEecCChhhH-------------hhhhchHhhcccccEEEEEEECCCcccHH
Q 005908          465 -----------------VDQPGGNKKTLILQEIPEEGV-------------KKILSNKEALASCDVTIFVYDSSDEYSWK  514 (670)
Q Consensus       465 -----------------vd~~g~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~ad~vllv~D~s~~~s~~  514 (670)
                                       +..+ ....+.+||++|...+             ..+  ...+++++|++|+|+|.++.....
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~--~~~~i~~~d~iilvv~~~~~~~~~  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENM--VRSYIEKPNCIILAISPANQDLAT  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHH--HHHHHHSSSEEEEEEEETTSCGGG
T ss_pred             HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHH--HHHHhhcCCeEEEEeecccCCcCC
Confidence                             1111 2335678999996554             334  678899999999999976543221


Q ss_pred             HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHHHHH
Q 005908          515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR  583 (670)
Q Consensus       515 ~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~  583 (670)
                        ..|+..+..... .  +.|+++|+||+|+.+.... ....+.+...++. +|+++|++++ ++++.+..
T Consensus       190 --~~~~~l~~~~~~-~--~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          190 --SDAIKISREVDP-S--GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             --CHHHHHHHHSCT-T--CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred             --HHHHHHHHHhcc-c--CCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence              233333333322 2  6899999999999864433 2223333333444 5999999999 88876544

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=8.5e-14  Score=147.51  Aligned_cols=83  Identities=22%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCC----------------------cccC-CceeEEEEeCCC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPP----------------------DFYP-DRVPVTIIDTSS   68 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~i~Dt~G   68 (670)
                      +||+|+|.||||||||+|+|++... ..++|.+........                      .+.. ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998872 223332211111000                      0111 146899999999


Q ss_pred             Cccc----hhhhH---HHhccCCEEEEEEECCCh
Q 005908           69 SLEN----KGKLN---EELKRADAVVLTYACNQQ   95 (670)
Q Consensus        69 ~~~~----~~~~~---~~~~~ad~ii~v~d~~~~   95 (670)
                      +...    ..+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8642    22223   357899999999999875

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.40  E-value=2e-12  Score=142.61  Aligned_cols=115  Identities=11%  Similarity=0.076  Sum_probs=83.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-----------------CCCCCCCCCCe--E---eCCcccCCceeEEEEeCCCC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESV-----------------PEKVPPVHAPT--R---LPPDFYPDRVPVTIIDTSSS   69 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~-----------------~~~~~~~~~~~--~---~~~~~~~~~~~~~i~Dt~G~   69 (670)
                      .=+|+|+|+.++|||||..+|+...-                 ..+........  +   ....+.++++.++|+||||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            45799999999999999999962210                 01111100000  0   12234577899999999999


Q ss_pred             ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      .+|.......++-+|++|+|+|+...-..+...  .++...+.  ++|+++++||+|....
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence            999999999999999999999998875555543  45666666  8999999999998654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.39  E-value=3.3e-12  Score=128.95  Aligned_cols=124  Identities=13%  Similarity=0.035  Sum_probs=81.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc-----hHh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS-----NKE  493 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~-----~~~  493 (670)
                      ...++|+++|.+|||||||+|+|++..+..+..  +++.. .....++.  ....+.+|||+|...+..+..     ...
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~--~~~~l~iiDTpG~~~~~~~~~~~~~~i~~  113 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSR--AGFTLNIIDTPGLIEGGYINDMALNIIKS  113 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEee--CCeEEEEEECCCCCCCccchHHHHHHHHH
Confidence            457999999999999999999999988754433  23322 22222332  456788999999755432200     111


Q ss_pred             --hcccccEEEEEEECCCcccHH-HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          494 --ALASCDVTIFVYDSSDEYSWK-RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       494 --~~~~ad~vllv~D~s~~~s~~-~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                        ..+.+|++++|+|++.. ++. ....|+..+....... ...|+++|+||+|+....
T Consensus       114 ~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          114 FLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCGG
T ss_pred             HhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCcC
Confidence              23579999999998753 333 3346777776543210 026999999999997643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.39  E-value=1.4e-13  Score=140.97  Aligned_cols=133  Identities=15%  Similarity=0.127  Sum_probs=106.7

Q ss_pred             HHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc-cHHH
Q 005908          438 ALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKR  515 (670)
Q Consensus       438 SLin~l~~~~~~-~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~-s~~~  515 (670)
                      +|+++++.+.|. ..+.||+++.+... +..+ +  ...+||+  ++++..+  +..+++++|++|+|||++++. ++..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~-~~~~-~--~~~iwD~--qer~~~l--~~~~~~~ad~vilV~D~~~~~~s~~~  103 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYT-PDET-G--SGVIENV--LHRKNLL--TKPHVANVDQVILVVTVKMPETSTYI  103 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEE-CCCS-S--SEEEEEE--CCCSCEE--TTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEE-EcCC-C--eEEEEEE--cccccee--eccccccCCEEEEEEeCCCCCCCHHH
Confidence            689999999988 77789999665533 2222 2  6778999  7788888  788999999999999999987 7888


Q ss_pred             HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHH
Q 005908          516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIW  586 (670)
Q Consensus       516 ~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~  586 (670)
                      +..|+..+...      ++|+++|+||+|+.+... .++.+++++.++  .. ++++||++| |++++|+.+..
T Consensus       104 l~~~l~~~~~~------~~piilv~NK~DL~~~~~-v~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          104 IDKFLVLAEKN------ELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHHHT------TCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHHHC------CCCEEEEEeHHHcCCchh-HHHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhcC
Confidence            99999877653      699999999999986432 244667777776  54 999999999 99999987754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.39  E-value=1.7e-12  Score=131.14  Aligned_cols=99  Identities=11%  Similarity=0.008  Sum_probs=63.1

Q ss_pred             EEeCCCCc-cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhh
Q 005908           63 IIDTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG  141 (670)
Q Consensus        63 i~Dt~G~~-~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~  141 (670)
                      |-..||+. .....+...+..+|+++.|+|+.++.+..+..  +.+.+    .++|+++|+||+|+.+..    ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~--l~~~l----~~kp~ilVlNK~DL~~~~----~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL----KNKPRIMLLNKADKADAA----VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC----SSSCEEEEEECGGGSCHH----HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHH--HHHHH----CCCCEEEEEECcccCCHH----HHHHHH
Confidence            44578865 34455668899999999999999987765310  11222    489999999999997521    111112


Q ss_pred             HHHHHhccCCeEEEeCcccCCCchHHHHHHHH
Q 005908          142 PIMQQFREIETCVECSATTMIQVPDVFYYAQK  173 (670)
Q Consensus       142 ~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~  173 (670)
                      .+....+  .+++.+||+++.|++++++.+.+
T Consensus        73 ~~~~~~g--~~~i~iSA~~~~gi~~L~~~i~~  102 (282)
T 1puj_A           73 EHFENQG--IRSLSINSVNGQGLNQIVPASKE  102 (282)
T ss_dssp             HHHHTTT--CCEEECCTTTCTTGGGHHHHHHH
T ss_pred             HHHHhcC--CcEEEEECCCcccHHHHHHHHHH
Confidence            2222222  26899999999999998886544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.39  E-value=1.7e-13  Score=143.82  Aligned_cols=156  Identities=15%  Similarity=0.145  Sum_probs=93.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CC-----------------------ccc--------------
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA------PT-----------------------TGE--------------  458 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~------~t-----------------------~~~--------------  458 (670)
                      ..++|+|+|.+|||||||+|+|++..+.+...      |+                       +..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            45899999999999999999999988753221      21                       000              


Q ss_pred             ---------ceEEEEEEcCCCceEEEEEecCChh-------------hHhhhhchHhhccccc-EEEEEEECCCcccHHH
Q 005908          459 ---------QYAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASCD-VTIFVYDSSDEYSWKR  515 (670)
Q Consensus       459 ---------~~~~~~vd~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~ad-~vllv~D~s~~~s~~~  515 (670)
                               ...+. +..+ ....+.+||++|..             .+..+  ...++..++ ++++|.|++....-..
T Consensus       110 g~~~gi~~~~~~~~-i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiL~v~~a~~~~~~~~  185 (353)
T 2x2e_A          110 GTNKGISPVPINLR-VYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSD  185 (353)
T ss_dssp             TTTTCCCCCCEEEE-EEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHH--HHHHHTSTTEEEEEEEETTSCGGGCH
T ss_pred             ccCCCcccCceEEE-EecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHH--HHHHHcCCCeEEEEEecCCCccchhH
Confidence                     00011 1112 13457789999942             33444  455665554 5566667765422222


Q ss_pred             HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHH--HHHHhCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908          516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSAR--VTQELGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       516 ~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~--~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      ...++..+..    .  +.|+++|+||+|+.+.... ....+.  +...+++.+++++||++| |++++++.+.+.
T Consensus       186 ~~~i~~~~~~----~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          186 ALKVAKEVDP----Q--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             HHHHHHHHCT----T--CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhCc----C--CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            2223333322    2  6899999999999864331 111110  000123335789999999 999999999773

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.39  E-value=2.4e-13  Score=144.28  Aligned_cols=161  Identities=17%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CC-------CCCCCeEeCCccc--CCceeEEEEeCCCCccch-------
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VP-------PVHAPTRLPPDFY--PDRVPVTIIDTSSSLENK-------   73 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~-------~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~-------   73 (670)
                      -.++|+|+|++|||||||+|+|++..+... ..       ++.....+...+.  .....+.+|||+|+....       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            457899999999999999999998876321 11       1111111222222  223478999999986531       


Q ss_pred             hhh------------------HHHhccCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc
Q 005908           74 GKL------------------NEELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT  134 (670)
Q Consensus        74 ~~~------------------~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~  134 (670)
                      ...                  ..++.++++.+++|+.... .++......|+..+.   .++|+|+|+||+|+...+.+.
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~  186 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ  186 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence            110                  1223455554444444332 344444434777664   378999999999997654431


Q ss_pred             chhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ...+.+...+...+  .+++++||+++.+++++|..+...++
T Consensus       187 ~~k~~i~~~~~~~~--i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          187 QFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHT--CCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHcC--CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            22244455555554  36899999999999998877766543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.39  E-value=3.8e-13  Score=142.55  Aligned_cols=87  Identities=17%  Similarity=0.111  Sum_probs=48.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-Ccc-cceEEEEE--Ec-----------------CCC-ceEEEEEecCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTG-EQYAVNVV--DQ-----------------PGG-NKKTLILQEIP  481 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-t~~-~~~~~~~v--d~-----------------~g~-~~~~~i~d~~g  481 (670)
                      ++|+|+|.||||||||+|+|++........| ||. .......+  +.                 .+. ...+.+||++|
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999999873222222 332 22222111  11                 111 24678899999


Q ss_pred             hhh----Hhhh-hchHhhcccccEEEEEEECCCc
Q 005908          482 EEG----VKKI-LSNKEALASCDVTIFVYDSSDE  510 (670)
Q Consensus       482 ~~~----~~~~-~~~~~~~~~ad~vllv~D~s~~  510 (670)
                      ...    .+.+ .+...+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            743    2222 1123567999999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.39  E-value=2.8e-12  Score=145.77  Aligned_cols=117  Identities=13%  Similarity=0.069  Sum_probs=81.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC--CCCC---CCCC-------------CcccceEEEEEEcCCCceEEEEEecCCh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSE---NYAP-------------TTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~---~~~~-------------t~~~~~~~~~vd~~g~~~~~~i~d~~g~  482 (670)
                      .+..+|+|+|.+|+|||||+|+|++.  .+..   +...             .++.......+...  ...+.+|||+|+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence            45689999999999999999999952  2210   0000             00111111223333  467889999999


Q ss_pred             hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (670)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~  548 (670)
                      ..+...  ...+++.+|++|+|+|++++.+.+....|. .+...      +.|+++|+||+|+...
T Consensus        86 ~df~~~--~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~------~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVE--VERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY------GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHH--HHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT------TCCEEEEEECTTSTTC
T ss_pred             cchHHH--HHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc------CCCEEEEEECCCcccc
Confidence            877665  678889999999999999988877665553 34443      6999999999999763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.38  E-value=5.2e-13  Score=136.58  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=84.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcC-CCCCCC--------CCCcccceEEEEEEcCCCceEEEEEecCCh-------hhH
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLER-PFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EGV  485 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~-~~~~~~--------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-------~~~  485 (670)
                      -.++|+|+|++|||||||+|+|++. .+....        .++.........+..++....+.+||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4589999999999999999999876 333221        112221111223333445567889999997       333


Q ss_pred             hhhhc-----hHhhccc-------------ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          486 KKILS-----NKEALAS-------------CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       486 ~~~~~-----~~~~~~~-------------ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      ..+..     ...+++.             +++++++.+.+.. +++....  ..+.....    +.|+++|+||+|+..
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~~----~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIHN----KVNIVPVIAKADTLT  169 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHTT----TSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHHh----cCCEEEEEEeCCCCC
Confidence            33310     0023322             3445555554331 2333321  22222221    579999999999986


Q ss_pred             Cccc---HHHHHHHHHHhCCCCcEEeecccCChHHHHHHHHHHHhC
Q 005908          548 YTMA---VQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEH  590 (670)
Q Consensus       548 ~~~~---~~~~~~~~~~~~~~~~~~vSA~~g~v~~l~~~l~~~~~~  590 (670)
                      .+..   .+++.++++.+++. ++++||++||++++|+.+.+.+..
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIK-IYHLPDAESDEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCC---------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCe-EEecCCccccccHHHHHHHHHhhc
Confidence            4332   45777888888875 999999999999999999988754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.37  E-value=1.5e-12  Score=133.34  Aligned_cols=108  Identities=16%  Similarity=0.091  Sum_probs=78.6

Q ss_pred             CCceeEEEEe-CCC-----CccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           56 PDRVPVTIID-TSS-----SLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        56 ~~~~~~~i~D-t~G-----~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                      ++.+.+.++| +.|     ++++..+.+.+++++|++++|+|++++. ++..+. .|+..+...  ++|+++|+||+|+.
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~  123 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLL  123 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGC
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCC
Confidence            3445566665 323     5667777778999999999999999886 888766 588877764  89999999999997


Q ss_pred             CCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      +...+ ...+....+....+  .+++++||++|.|++++++
T Consensus       124 ~~~~v-~~~~~~~~~~~~~g--~~~~~~SA~~g~gi~~L~~  161 (302)
T 2yv5_A          124 NEEEK-KELERWISIYRDAG--YDVLKVSAKTGEGIDELVD  161 (302)
T ss_dssp             CHHHH-HHHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHH
T ss_pred             Ccccc-HHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHh
Confidence            54321 11122334444444  3799999999999998776

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.37  E-value=8.8e-13  Score=140.00  Aligned_cols=159  Identities=15%  Similarity=0.131  Sum_probs=80.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--------CCcccceEEEEEEcCCCceEEEEEecCChhhHh-------
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-------  486 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~-------  486 (670)
                      -.++|+|+|++|||||||+|+|++..+.....        +|++.......+..++....+.+||++|.....       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            34899999999999999999999987642211        122211111122333344567889999864421       


Q ss_pred             hhh----------------chHhhcccccEEEEEEECCCc-ccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908          487 KIL----------------SNKEALASCDVTIFVYDSSDE-YSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (670)
Q Consensus       487 ~~~----------------~~~~~~~~ad~vllv~D~s~~-~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~  548 (670)
                      .+.                -....+.++++.+++|+.... .++.... .|+..+..       +.|+|+|+||+|+...
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-------~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-------TSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-------cCcEEEEEEcccCccH
Confidence            110                012344555544444443322 2343333 56665531       5899999999999874


Q ss_pred             ccc---HHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHH
Q 005908          549 TMA---VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       549 ~~~---~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                      +..   ...+.+.+...++. ++++||+++ +++++|..+...+
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-CCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhhC
Confidence            433   25667777788876 899999999 9999988887764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.36  E-value=6.3e-12  Score=142.98  Aligned_cols=118  Identities=11%  Similarity=-0.015  Sum_probs=81.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCC--CCC---CCCC-------------CcccceEEEEEEcC-----CCceEEEEE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE---NYAP-------------TTGEQYAVNVVDQP-----GGNKKTLIL  477 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~---~~~~-------------t~~~~~~~~~vd~~-----g~~~~~~i~  477 (670)
                      .+..+|+|+|..|+|||||+++|+...  +..   +...             .++.......+.+.     +....+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            456899999999999999999997532  111   0000             00011111122222     234788899


Q ss_pred             ecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       478 d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      ||+|+..|...  ...+++.+|++|+|+|++++.+.+....| ..+...      ++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~--~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~~------~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIE--VERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANKY------KVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHH--HHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHHc------CCCEEEEEeCCCccc
Confidence            99999887766  67888999999999999998775554444 333332      699999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.35  E-value=4.4e-13  Score=131.02  Aligned_cols=154  Identities=13%  Similarity=0.057  Sum_probs=93.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCC-------CCCCCC---------CCeEeCCc------c----------cCCc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-------KVPPVH---------APTRLPPD------F----------YPDR   58 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-------~~~~~~---------~~~~~~~~------~----------~~~~   58 (670)
                      +..+|+|+|.+|||||||+++|++.....       ..++..         +.......      .          ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            34689999999999999999998652111       011100         00000000      0          2245


Q ss_pred             eeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhh
Q 005908           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE  138 (670)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~  138 (670)
                      ..+.+|||+|+.....   .+...++.+++|+|+++....  .   | ......  +.|+++|+||+|+...... ...+
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~---~-~~~~~~--~~~~iiv~NK~Dl~~~~~~-~~~~  176 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--V---E-KHPEIF--RVADLIVINKVALAEAVGA-DVEK  176 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--H---H-HCHHHH--HTCSEEEEECGGGHHHHTC-CHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--h---h-hhhhhh--hcCCEEEEecccCCcchhh-HHHH
Confidence            6799999999521111   111357899999998775421  1   1 111222  5789999999998643211 1222


Q ss_pred             hhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          139 VMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                       +......++...+++++||++|.|++++++.+.+.+..
T Consensus       177 -~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          177 -MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             -HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence             23333444333479999999999999999999987754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.35  E-value=1.5e-12  Score=143.80  Aligned_cols=119  Identities=24%  Similarity=0.235  Sum_probs=83.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCC----CCCCCCCCCeEe-CCcc--------------------c--C----C
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP----EKVPPVHAPTRL-PPDF--------------------Y--P----D   57 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~----~~~~~~~~~~~~-~~~~--------------------~--~----~   57 (670)
                      .....+|+|+|.+|||||||+|+|++..+.    ...+++.....+ ....                    .  +    .
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            446789999999999999999999998863    223333111111 1000                    0  0    0


Q ss_pred             c-----------eeEEEEeCCCCcc-----------chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 005908           58 R-----------VPVTIIDTSSSLE-----------NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK  115 (670)
Q Consensus        58 ~-----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~  115 (670)
                      +           ..+.||||||+..           +......+++.+|++|+|+|+++........ .|+..++..  +
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--E  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--G
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--C
Confidence            0           3689999999875           4455667889999999999998754444443 377766654  6


Q ss_pred             CCEEEEEeCCCCCCC
Q 005908          116 VPIIVAGCKLDLRGD  130 (670)
Q Consensus       116 ~pvilv~NK~Dl~~~  130 (670)
                      .|+++|+||+|+...
T Consensus       219 ~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          219 DKIRVVLNKADMVET  233 (550)
T ss_dssp             GGEEEEEECGGGSCH
T ss_pred             CCEEEEEECCCccCH
Confidence            899999999998753

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.35  E-value=6.8e-13  Score=137.99  Aligned_cols=119  Identities=12%  Similarity=0.072  Sum_probs=87.9

Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK  124 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK  124 (670)
                      ..+++.+|||+|++.+...+..++++++++|+|||++          +..++++... |+..+...  .++.|+|||+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence            5689999999999999999999999999999999998          7889998885 66666542  358999999999


Q ss_pred             CCCCCCCCc-cc------------------hhhhhhHH-HHHh-------------ccCCeEEEeCcccCCCchHHHHHH
Q 005908          125 LDLRGDHNA-TS------------------LEEVMGPI-MQQF-------------REIETCVECSATTMIQVPDVFYYA  171 (670)
Q Consensus       125 ~Dl~~~~~~-~~------------------~~~~~~~~-~~~~-------------~~~~~~~~~SA~~~~gi~~l~~~i  171 (670)
                      +|+..++.. ..                  ..+....+ .+++             +....+++|||+++.||+++|+.+
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            998543210 01                  01222333 3322             112246899999999999999999


Q ss_pred             HHHHc
Q 005908          172 QKAVL  176 (670)
Q Consensus       172 ~~~~~  176 (670)
                      .+.+.
T Consensus       340 ~~~I~  344 (354)
T 2xtz_A          340 DETLR  344 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.34  E-value=5.2e-13  Score=140.17  Aligned_cols=106  Identities=13%  Similarity=0.046  Sum_probs=71.8

Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~  136 (670)
                      .++.+.||||||...   .....+..+|++|+|+|....+....+.        ....++|+++|+||+|+......   
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~---  235 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEA---  235 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHH---
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHH---
Confidence            568899999999643   2335568999999999987655443221        11124699999999998643211   


Q ss_pred             hhhhhHHHHH---hc-----cCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          137 EEVMGPIMQQ---FR-----EIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       137 ~~~~~~~~~~---~~-----~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ......+...   ++     ...+++++||++|.||+++++.+.+.+.
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            1122233222   21     1137999999999999999999988764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=1.2e-11  Score=128.35  Aligned_cols=148  Identities=17%  Similarity=0.148  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCc---------------eEEEEEecCChhhHh
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEGVK  486 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g~~---------------~~~~i~d~~g~~~~~  486 (670)
                      ++|+|+|.||||||||+|+|++........|  |.....  ..+.+++..               ..+.+||++|.....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999999999999774332222  222222  234555321               467889999975542


Q ss_pred             ----hhh-chHhhcccccEEEEEEECCCc----------ccHHHHHHHHHHHH---------------------------
Q 005908          487 ----KIL-SNKEALASCDVTIFVYDSSDE----------YSWKRTKELLVEVA---------------------------  524 (670)
Q Consensus       487 ----~~~-~~~~~~~~ad~vllv~D~s~~----------~s~~~~~~~~~~i~---------------------------  524 (670)
                          .+. ....+++.+|++++|+|+++.          +.+.++..+..++.                           
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~  160 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF  160 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence                221 134568999999999999862          23333332222210                           


Q ss_pred             ---------HhcC---------------------CCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecc
Q 005908          525 ---------RLGE---------------------DSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       525 ---------~~~~---------------------~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                               ....                     .....+|+++++||.|..- .+.....+.+++...+.. ++++||+
T Consensus       161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~-~i~~sA~  239 (363)
T 1jal_A          161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAV-VVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCE-EEEECHH
T ss_pred             HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCC-EEEechH
Confidence                     0000                     0011599999999999653 223366677788777765 9999987


Q ss_pred             c
Q 005908          574 S  574 (670)
Q Consensus       574 ~  574 (670)
                      .
T Consensus       240 ~  240 (363)
T 1jal_A          240 I  240 (363)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.32  E-value=2.7e-11  Score=125.53  Aligned_cols=83  Identities=17%  Similarity=0.266  Sum_probs=54.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEe-CCcccCC---------------ceeEEEEeCCCCccchh
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRL-PPDFYPD---------------RVPVTIIDTSSSLENKG   74 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~---------------~~~~~i~Dt~G~~~~~~   74 (670)
                      .++|+|+|.||||||||+|+|++..+ ..++|.+...... ...+...               ...+.+|||||+.++..
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            37999999999999999999998773 2223321111110 0111110               25799999999986532


Q ss_pred             -------hhHHHhccCCEEEEEEECCC
Q 005908           75 -------KLNEELKRADAVVLTYACNQ   94 (670)
Q Consensus        75 -------~~~~~~~~ad~ii~v~d~~~   94 (670)
                             ....+++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                   22356899999999999986

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.31  E-value=4.9e-12  Score=142.45  Aligned_cols=156  Identities=16%  Similarity=0.127  Sum_probs=100.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC--eEe-------------------------------------
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRL-------------------------------------   50 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~--~~~-------------------------------------   50 (670)
                      ..-.+|+|+|.+++|||||+|+|++..+.+...+..+.  ..+                                     
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            35579999999999999999999998763221111000  000                                     


Q ss_pred             ------------CCc-ccCCceeEEEEeCCCCccc-------------hhhhHHHh-ccCCEEEEEEECCChhhHHHHHH
Q 005908           51 ------------PPD-FYPDRVPVTIIDTSSSLEN-------------KGKLNEEL-KRADAVVLTYACNQQSTLSRLSS  103 (670)
Q Consensus        51 ------------~~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~-~~ad~ii~v~d~~~~~s~~~~~~  103 (670)
                                  ... .......+.|+||||....             ......++ ..+|++++|+|++......+.. 
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence                        000 0012335889999997641             12233444 5789999999998754333322 


Q ss_pred             HHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-Hh----ccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908          104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QF----REIETCVECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       104 ~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      .++..+...  +.|+|+|+||+|+.+....  ..    .+.. ..    ....+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~~--~~----~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDPQ--GQRTIGVITKLDLMDEGTD--AR----DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCTT--CSSEEEEEECTTSSCTTCC--SH----HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHhc--CCCEEEEEeCcccCCcchh--hH----HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            256666554  7999999999999865432  11    1111 11    012257889999999999999998874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.31  E-value=1.6e-12  Score=126.99  Aligned_cols=154  Identities=10%  Similarity=0.056  Sum_probs=96.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC------CCCCcc--------cceEEEEEEcCC----------------Cc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN------YAPTTG--------EQYAVNVVDQPG----------------GN  471 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------~~~t~~--------~~~~~~~vd~~g----------------~~  471 (670)
                      ...+|+|+|.+|||||||+++|++......      .++.++        .......++.+|                ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457999999999999999999987522110      111110        012233344432                12


Q ss_pred             eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-c
Q 005908          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-M  550 (670)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~  550 (670)
                      ..+.+||++|......     .+...++.+++|+|+++....  ...+..   ..      +.|+++|+||+|+.+.. .
T Consensus       109 ~d~iiidt~G~~~~~~-----~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~------~~~~iiv~NK~Dl~~~~~~  172 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV-----DFDLGENYRVVMVSVTEGDDV--VEKHPE---IF------RVADLIVINKVALAEAVGA  172 (221)
T ss_dssp             CSEEEEEEEEBSSGGG-----GCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH------HTCSEEEEECGGGHHHHTC
T ss_pred             CCEEEEeCCCCCCCCc-----hhccccCcEEEEEeCCCcchh--hhhhhh---hh------hcCCEEEEecccCCcchhh
Confidence            3567888888411000     111357889999999876431  111111   11      48899999999986532 2


Q ss_pred             cHHHHHHHHHHhC-CCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          551 AVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       551 ~~~~~~~~~~~~~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ..+...+..+.++ ..+++++||++| |++++++.+.+.+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            3455555555554 236899999999 9999999999987653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=136.57  Aligned_cols=151  Identities=17%  Similarity=0.084  Sum_probs=88.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC------C--CCCCCCCCC-------------------C---------------Ce
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE------S--VPEKVPPVH-------------------A---------------PT   48 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~------~--~~~~~~~~~-------------------~---------------~~   48 (670)
                      ....|+|+|.||||||||+|+|++.      +  +....|+..                   .               .+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            4689999999999999999999852      1  000001000                   0               00


Q ss_pred             E--eC--CcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeC
Q 005908           49 R--LP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK  124 (670)
Q Consensus        49 ~--~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK  124 (670)
                      +  ..  ..+...++.+.++||+|....   .......+|++++|+|++.......+.    ..+    ...|.++|+||
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK  221 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTK  221 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEee
Confidence            0  00  001235678999999996432   234568999999999987654322221    111    15688999999


Q ss_pred             CCCCCCCCccchhhhhhHHHHHhc--------cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          125 LDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       125 ~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      +|+.+...   .......+...+.        ...+++.+||++|.|++++++.|.+.+
T Consensus       222 ~Dl~~~~~---~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          222 SDGDLIVP---ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             CSGGGHHH---HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ecCCCchh---HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            99853211   0111222222111        013689999999999999999998865

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.29  E-value=7.4e-12  Score=125.71  Aligned_cols=167  Identities=19%  Similarity=0.118  Sum_probs=97.7

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHH-----cCCC--CCCCCCCCC-------------CeE--eCCcc----------
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAA-----TESV--PEKVPPVHA-------------PTR--LPPDF----------   54 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~-----~~~~--~~~~~~~~~-------------~~~--~~~~~----------   54 (670)
                      ...++...++++|.+|||||||++.|.     +.+.  ....+....             ...  .....          
T Consensus         9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (262)
T 1yrb_A            9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESY   88 (262)
T ss_dssp             CTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHH
T ss_pred             cCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecH
Confidence            345667889999999999999999998     4441  111111000             000  00000          


Q ss_pred             ----------------cCCceeEEEEeCCCCccchhhhH------HHhccCCEEEEEEECCChhhHHHHHHHH---HHHH
Q 005908           55 ----------------YPDRVPVTIIDTSSSLENKGKLN------EELKRADAVVLTYACNQQSTLSRLSSYW---LPEL  109 (670)
Q Consensus        55 ----------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~ii~v~d~~~~~s~~~~~~~~---~~~l  109 (670)
                                      ....+.+.||||||+.+......      ..+.. +++++++|.....+.......+   ....
T Consensus        89 ~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~  167 (262)
T 1yrb_A           89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID  167 (262)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence                            01235899999999875433221      24556 8999999876543333322111   1112


Q ss_pred             HhcCCCCCEEEEEeCCCCCCCCCccchhhh---hh----H-----------------HHHHhccCCeEEEeCcccCCCch
Q 005908          110 RRLEIKVPIIVAGCKLDLRGDHNATSLEEV---MG----P-----------------IMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus       110 ~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~---~~----~-----------------~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      ...  ++|+++|+||+|+..........+.   ..    .                 +...++...+++++||++|.|++
T Consensus       168 ~~~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~  245 (262)
T 1yrb_A          168 LRL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE  245 (262)
T ss_dssp             HHH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred             ccc--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence            222  7899999999998753211000110   01    1                 12333332368999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++++++.+.+.
T Consensus       246 ~l~~~i~~~~~  256 (262)
T 1yrb_A          246 DLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999887653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.29  E-value=2.8e-12  Score=133.87  Aligned_cols=120  Identities=15%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             cCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHh--cCCCCCEEEEE
Q 005908           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRR--LEIKVPIIVAG  122 (670)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~--~~~~~pvilv~  122 (670)
                      ..+++.+.+|||+|++.+...+..++++++++|||||+++          ..++++... |+..+..  ...++|+|||+
T Consensus       197 ~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~  275 (362)
T 1zcb_A          197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFL  275 (362)
T ss_dssp             EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred             eeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEE
Confidence            3457899999999999999999999999999999999999          788998875 6666543  23589999999


Q ss_pred             eCCCCCCCC---------------C-ccchhhhhhHHHHHh--------ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          123 CKLDLRGDH---------------N-ATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       123 NK~Dl~~~~---------------~-~~~~~~~~~~~~~~~--------~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ||+|+..++               . + +.++....+...|        .....+++|||+++.||+++|+.+.+.+.
T Consensus       276 NK~DL~~~ki~~~~l~~~fp~y~g~~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          276 NKTDLLEEKVQVVSIKDYFLEFEGDPH-CLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             ECHHHHHHHTTTCCGGGTCTTCCSCTT-CHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EChhhhhhhccccchhhcCccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            999986321               1 2 3333332222221        11236899999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.29  E-value=2.5e-11  Score=136.67  Aligned_cols=157  Identities=15%  Similarity=0.117  Sum_probs=99.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceE--------------------------------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYA--------------------------------------  461 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~--------------------------------------  461 (670)
                      ...++|+|+|.+|+|||||+|+|++..+.+... ++|+....                                      
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            345899999999999999999999988743332 22221111                                      


Q ss_pred             ------------EEEEEcCCCceEEEEEecCChh-------------hHhhhhchHhhc-ccccEEEEEEECCCcccHHH
Q 005908          462 ------------VNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEAL-ASCDVTIFVYDSSDEYSWKR  515 (670)
Q Consensus       462 ------------~~~vd~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~-~~ad~vllv~D~s~~~s~~~  515 (670)
                                  ...+..| ....+.++|++|-.             ....+  ...++ ..+|++++|+|+++...-.+
T Consensus       129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~l--v~~yi~~~aDlIL~VVDAs~~~~~~d  205 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSD  205 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHH--HHHHHTSTTEEEEEEEETTSCSSSCH
T ss_pred             cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHH--HHHHHhcCCcEEEEEEcCCCCcchhH
Confidence                        1112223 22345678888832             22222  23333 67999999999987644333


Q ss_pred             HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH----hCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908          516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (670)
Q Consensus       516 ~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g-~v~~l~~~l~~~  587 (670)
                      ...++..+...      +.|+++|+||+|+.+.......... .+.    +++.+++.+||++| |+++|++.+.+.
T Consensus       206 ~l~ll~~L~~~------g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          206 ALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHHHCTT------CSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHHHhc------CCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            33444444332      6999999999999875433222111 011    23346889999999 999999999873

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.28  E-value=7.5e-12  Score=130.71  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC------CCC-CCCCCCcc-------------------cceEEEEEE--------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER------PFS-ENYAPTTG-------------------EQYAVNVVD--------  466 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~------~~~-~~~~~t~~-------------------~~~~~~~vd--------  466 (670)
                      .....|+|+|.||||||||+|+|++.      ... ...++++.                   ....+....        
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            45789999999999999999999962      111 11111111                   001110000        


Q ss_pred             c----------CCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcE
Q 005908          467 Q----------PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (670)
Q Consensus       467 ~----------~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi  536 (670)
                      +          ......+.++||+|....     .......+|++++|+|++++...+.+..   .+   .     ..|.
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~-----~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l-----~~~~  215 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS-----EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I-----EMAD  215 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C-----HHHHHTTCSEEEEEECCC------------------C-----CSCS
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh-----hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H-----hcCC
Confidence            0          002235677999985211     1234578999999999987643221111   11   1     4688


Q ss_pred             EEEEeCCCCCCCcccHHHHHHHHHHhC---------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          537 LLIASKDDLKPYTMAVQDSARVTQELG---------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       537 ilv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ++|+||+|+.+..........+...+.         .++++.+||++| |++++++.|.+.+.
T Consensus       216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            999999998752211122333333221         245899999999 99999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.28  E-value=6.8e-12  Score=131.64  Aligned_cols=155  Identities=11%  Similarity=0.130  Sum_probs=95.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCC------CCC-CCCCCccc-----------------ceEEEEEEcCC------
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERP------FSE-NYAPTTGE-----------------QYAVNVVDQPG------  469 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~------~~~-~~~~t~~~-----------------~~~~~~vd~~g------  469 (670)
                      ....++|+|+|.+|||||||+++|...-      ... ..++....                 ...+.....++      
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG  155 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence            3456899999999999999999996321      100 00110000                 00011111111      


Q ss_pred             --------------CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc
Q 005908          470 --------------GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP  535 (670)
Q Consensus       470 --------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p  535 (670)
                                    ....+.++||+|....     ....+..+|++++|+|.+..+.++.+..   .+        .+.|
T Consensus       156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-----~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~--------~~~p  219 (355)
T 3p32_A          156 VTRATRETVVLLEAAGFDVILIETVGVGQS-----EVAVANMVDTFVLLTLARTGDQLQGIKK---GV--------LELA  219 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSCSSH-----HHHHHTTCSEEEEEEESSTTCTTTTCCT---TS--------GGGC
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH-----HHHHHHhCCEEEEEECCCCCccHHHHHH---hH--------hhcC
Confidence                          2356778999984321     2234588999999999887654322221   01        0479


Q ss_pred             EEEEEeCCCCCCCcccHHHHHHHHHH---h-----C-CCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          536 CLLIASKDDLKPYTMAVQDSARVTQE---L-----G-IEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       536 iilv~NK~Dl~~~~~~~~~~~~~~~~---~-----~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      +++|+||+|+.+.........++...   .     + ..|++++||++| |++++++.|.+.+..
T Consensus       220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            99999999997533322333333333   2     2 246999999999 999999999988753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.28  E-value=8.6e-14  Score=136.62  Aligned_cols=58  Identities=14%  Similarity=0.172  Sum_probs=44.6

Q ss_pred             CCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhC-CCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          533 GVPCLLIASKDDLKPYT-MAVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       533 ~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      +.|.++|+||+|+.+.. ...+...++++.++ ..+++++||++| |++++|+.+.+.+..
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            47889999999987532 23555666666654 236999999999 999999999887753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.28  E-value=6.4e-12  Score=130.74  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=96.5

Q ss_pred             EEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCC----------cccHHHHHHHHHHHHHhcCCCC
Q 005908          462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSG  531 (670)
Q Consensus       462 ~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~  531 (670)
                      ...+...  ...+.+||++|++.++.+  +..++++++++|+|+|+++          ..++.+...|+..+....... 
T Consensus       185 ~~~~~~~--~~~l~iwDt~GQe~~r~~--w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~-  259 (353)
T 1cip_A          185 ETHFTFK--DLHFKMFDVGGQRSERKK--WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT-  259 (353)
T ss_dssp             EEEEEET--TEEEEEEEECCSGGGGGG--GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT-
T ss_pred             EEEEeeC--CeeEEEEeCCCchhhhHH--HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc-
Confidence            3444443  577889999999999998  8999999999999999999          567888888988887643222 


Q ss_pred             CCCcEEEEEeCCCCCCCc----------------ccHHHHHHHHHH-----------hCCCCcEEeecccC-ChHHHHHH
Q 005908          532 YGVPCLLIASKDDLKPYT----------------MAVQDSARVTQE-----------LGIEPPIPVSMKSK-DLNNVFSR  583 (670)
Q Consensus       532 ~~~piilv~NK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSA~~g-~v~~l~~~  583 (670)
                       +.|+||++||+|+...+                ...+++.+++..           .++ .+++|||++| ||.++|++
T Consensus       260 -~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~  337 (353)
T 1cip_A          260 -DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDA  337 (353)
T ss_dssp             -TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHH
T ss_pred             -CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHH
Confidence             69999999999985322                335667777663           223 4899999999 99999999


Q ss_pred             HHHHHhC
Q 005908          584 IIWAAEH  590 (670)
Q Consensus       584 l~~~~~~  590 (670)
                      +.+.+..
T Consensus       338 v~~~i~~  344 (353)
T 1cip_A          338 VTDVIIK  344 (353)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.27  E-value=3.7e-12  Score=133.91  Aligned_cols=120  Identities=12%  Similarity=0.089  Sum_probs=90.4

Q ss_pred             CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhc--CCCCCEEEEEe
Q 005908           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC  123 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~N  123 (670)
                      .+++.+.+|||+|++.+...+..++++++++|||||+++          ..++++... |+..+...  .+++|+|||+|
T Consensus       214 ~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgN  292 (402)
T 1azs_C          214 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLN  292 (402)
T ss_dssp             ETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEE
T ss_pred             cCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEE
Confidence            356899999999999999999999999999999999999          899999885 77777553  46899999999


Q ss_pred             CCCCCCCCC---ccc-------------------------hhhhhhHH-----HHHh-----c-cCCeEEEeCcccCCCc
Q 005908          124 KLDLRGDHN---ATS-------------------------LEEVMGPI-----MQQF-----R-EIETCVECSATTMIQV  164 (670)
Q Consensus       124 K~Dl~~~~~---~~~-------------------------~~~~~~~~-----~~~~-----~-~~~~~~~~SA~~~~gi  164 (670)
                      |+|+...+.   +..                         ..+....+     +...     + ....+++|||+++.||
T Consensus       293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV  372 (402)
T 1azs_C          293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  372 (402)
T ss_dssp             CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred             ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence            999854321   100                         01122222     1111     0 1124789999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+.+.+.+.
T Consensus       373 ~~vF~~v~~~I~  384 (402)
T 1azs_C          373 RRVFNDCRDIIQ  384 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.27  E-value=4.8e-12  Score=146.75  Aligned_cols=115  Identities=11%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCC---------------CC-CCCCeEeCCc--------------ccCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV---------------PP-VHAPTRLPPD--------------FYPD   57 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~---------------~~-~~~~~~~~~~--------------~~~~   57 (670)
                      .+..+|+|+|++|+|||||+++|+...  +....               .+ +.........              .+..
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            345799999999999999999998642  11000               00 0000001111              1234


Q ss_pred             ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                      ++.++||||||+.+|...+..+++.+|++|+|+|+++..+++... .|... ...  ++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~-~~~--~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQA-LGE--RIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHH-HHT--TCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-HHc--CCCeEEEEECCCcc
Confidence            788999999999999999999999999999999999988887764 35433 333  78999999999986

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.27  E-value=4.3e-12  Score=142.99  Aligned_cols=113  Identities=20%  Similarity=0.241  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--CCC-----CCCCCCC-----------CeEeCCcccCCceeEEEEeCCCCccchhh
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPVHA-----------PTRLPPDFYPDRVPVTIIDTSSSLENKGK   75 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~--~~~-----~~~~~~~-----------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (670)
                      +|+|+|+.++|||||..+|+...  +..     ...++.+           .......+.++++.++|+||||+.+|...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            68999999999999999997322  111     0011110           01123445678899999999999999999


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      ....++-+|++|+|+|+...-..+..  ..++...+.  ++|.|+++||+|....
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSC
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccC
Confidence            99999999999999999876444433  355566666  7999999999998654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.27  E-value=2.7e-12  Score=133.80  Aligned_cols=107  Identities=13%  Similarity=0.089  Sum_probs=68.1

Q ss_pred             CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccc
Q 005908           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS  135 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~  135 (670)
                      ..++.+.||||||......   ...+.+|++++|+|.+.......+.    ..  ..  ++|+++|+||+|+.....   
T Consensus       146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~~--~~--~~p~ivv~NK~Dl~~~~~---  211 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----KG--LM--EVADLIVINKDDGDNHTN---  211 (341)
T ss_dssp             HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----HH--HH--HHCSEEEECCCCTTCHHH---
T ss_pred             ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----Hh--hh--cccCEEEEECCCCCChHH---
Confidence            3467899999999765432   3568999999999987553322111    01  11  468899999999864311   


Q ss_pred             hhhhhhHHHH---Hhcc-----CCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          136 LEEVMGPIMQ---QFRE-----IETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       136 ~~~~~~~~~~---~~~~-----~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      .......+..   .++.     ..+++++||++|.|++++++.+.+.+.
T Consensus       212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1111122222   2221     236899999999999999999988654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.25  E-value=7.8e-11  Score=122.85  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=75.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH----hh-hhchHhhcc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KK-ILSNKEALA  496 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~-~~~~~~~~~  496 (670)
                      ...+|+|||.||||||||+|+|++........|.++.+.....+.++|  ..+.++|++|-..-    .. ..+....++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            457999999999999999999999775544445444334445566663  45677888884211    11 122456779


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 005908          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL  545 (670)
Q Consensus       497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl  545 (670)
                      .||++++|+|++++.  ........++......- ..+|.+++.||+|.
T Consensus       149 ~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          149 TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRL-NKTPPDILIKKKEK  194 (376)
T ss_dssp             HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEE-TCCCCCEEEEECSS
T ss_pred             hcCccccccccCccH--HHHHHHHHHHHHhhHhh-ccCChhhhhhHhhh
Confidence            999999999999873  33333334443321100 13566667777775

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.23  E-value=1.4e-11  Score=136.21  Aligned_cols=121  Identities=16%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCC--CCC-CCCcccceEEEE---------------------------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS--ENY-APTTGEQYAVNV---------------------------------  464 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~-~~t~~~~~~~~~---------------------------------  464 (670)
                      ...++|+|+|.+|||||||+|+|++..+.  .+. .+++.....+..                                 
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45689999999999999999999998875  222 243321111000                                 


Q ss_pred             ---EEcCCC-ceEEEEEecCChhh-----------HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCC
Q 005908          465 ---VDQPGG-NKKTLILQEIPEEG-----------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED  529 (670)
Q Consensus       465 ---vd~~g~-~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~  529 (670)
                         +.+++. ...+.+|||+|...           +..+  ...++..+|++|+|+|+++.........++..+...   
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~--~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAV--LRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHH--HHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHH--HHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence               000000 02467899999753           3344  566789999999999998864556666666665432   


Q ss_pred             CCCCCcEEEEEeCCCCCCCc
Q 005908          530 SGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       530 ~~~~~piilv~NK~Dl~~~~  549 (670)
                         +.|+++|+||+|+....
T Consensus       218 ---~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          218 ---EDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             ---GGGEEEEEECGGGSCHH
T ss_pred             ---CCCEEEEEECCCccCHH
Confidence               58999999999998743

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.22  E-value=1.4e-11  Score=128.08  Aligned_cols=116  Identities=10%  Similarity=0.036  Sum_probs=89.5

Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC----------CcccHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI  539 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv  539 (670)
                      +...+.+||++|++.++.+  +..++++++++|+|||++          +..+|++...|+..+.......  +.|++||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~--~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~--~~piiLv  256 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRK--WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE--KTSFMLF  256 (354)
T ss_dssp             ---EEEEEEECCSTTGGGG--TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS--SCEEEEE
T ss_pred             cceeeEEEECCCchhhhHH--HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC--CCeEEEE
Confidence            4678889999999999998  899999999999999998          7789999999998887643222  6999999


Q ss_pred             EeCCCCCCCcc----------------------cHHHHHHHHHH-h-------------CCC-CcEEeecccC-ChHHHH
Q 005908          540 ASKDDLKPYTM----------------------AVQDSARVTQE-L-------------GIE-PPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       540 ~NK~Dl~~~~~----------------------~~~~~~~~~~~-~-------------~~~-~~~~vSA~~g-~v~~l~  581 (670)
                      +||+|+..++.                      ..+++.+++.. +             +.. .+++|||+++ ||.++|
T Consensus       257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF  336 (354)
T 2xtz_A          257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF  336 (354)
T ss_dssp             EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred             EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence            99999854221                      13455555432 1             111 3589999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      +++.+.+.
T Consensus       337 ~~v~~~I~  344 (354)
T 2xtz_A          337 KLVDETLR  344 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988775

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.21  E-value=6.4e-11  Score=123.68  Aligned_cols=157  Identities=15%  Similarity=0.083  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCC-------------------CceEEEEEecCCh
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPG-------------------GNKKTLILQEIPE  482 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g-------------------~~~~~~i~d~~g~  482 (670)
                      ++|+|+|.||||||||+|+|++........+  |......  .+..++                   ....+.+||++|.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999998753222222  2222222  233332                   1236778999997


Q ss_pred             hhHh----hh-hchHhhcccccEEEEEEECCCc----------ccHHHHHHHHHHH------------------------
Q 005908          483 EGVK----KI-LSNKEALASCDVTIFVYDSSDE----------YSWKRTKELLVEV------------------------  523 (670)
Q Consensus       483 ~~~~----~~-~~~~~~~~~ad~vllv~D~s~~----------~s~~~~~~~~~~i------------------------  523 (670)
                      ....    .+ .+....++.+|++++|+|+++.          +.+.++..+..++                        
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~  159 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE  159 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence            5432    12 1134568999999999999852          1222221111111                        


Q ss_pred             -----------HHhc-CC--------------------CCCCCcEEEEEeCCCC--CCC--cccHHHHHHHHHHhCCCCc
Q 005908          524 -----------ARLG-ED--------------------SGYGVPCLLIASKDDL--KPY--TMAVQDSARVTQELGIEPP  567 (670)
Q Consensus       524 -----------~~~~-~~--------------------~~~~~piilv~NK~Dl--~~~--~~~~~~~~~~~~~~~~~~~  567 (670)
                                 .... ..                    ....+|+++++||.|.  .+.  +.....++++++..+.+ +
T Consensus       160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~-v  238 (368)
T 2dby_A          160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE-V  238 (368)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE-E
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe-E
Confidence                       0000 00                    0114899999999973  332  33467778888888865 9


Q ss_pred             EEeecccC-ChHHHHHH
Q 005908          568 IPVSMKSK-DLNNVFSR  583 (670)
Q Consensus       568 ~~vSA~~g-~v~~l~~~  583 (670)
                      +++||+++ ++.++.+.
T Consensus       239 v~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          239 VVVSARLEAELAELSGE  255 (368)
T ss_dssp             EEECHHHHHHHHTSCHH
T ss_pred             EEeechhHHHHHHhchH
Confidence            99999986 66665544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.21  E-value=2.4e-11  Score=126.79  Aligned_cols=141  Identities=14%  Similarity=0.097  Sum_probs=96.4

Q ss_pred             HHHHhcCCCCCC-------CCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCC---
Q 005908          440 LNSFLERPFSEN-------YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD---  509 (670)
Q Consensus       440 in~l~~~~~~~~-------~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~---  509 (670)
                      +.++....+.++       ..+|++.  ....+...  ...+.+||++|++.++..  +..++++++++|+|+|+++   
T Consensus       166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi--~~~~~~~~--~~~l~i~Dt~Gq~~~r~~--w~~~f~~~~~iIfv~dls~~dq  239 (362)
T 1zcb_A          166 LDKLGVPDYIPSQQDILLARRPTKGI--HEYDFEIK--NVPFKMVDVGGQRSERKR--WFECFDSVTSILFLVSSSEFDQ  239 (362)
T ss_dssp             HHHHTSTTCCCCHHHHHHCCCCCSSE--EEEEEEET--TEEEEEEEECC---------CTTSCTTCCEEEEEEETTCTTC
T ss_pred             HHHHhcCCCCCChhhhhhccCCccce--EEEEeeeC--CeEEEEEeccchhhhhhh--HHHHhCCCCEEEEEEECccccc
Confidence            555655544432       1234443  33444444  478889999999999888  8999999999999999999   


Q ss_pred             -------cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----------------ccHHHHHHHHH-----
Q 005908          510 -------EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------------MAVQDSARVTQ-----  560 (670)
Q Consensus       510 -------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----------------~~~~~~~~~~~-----  560 (670)
                             ..++.+...|+..+.......  +.|+|+++||+|+..++                 ...+++..++.     
T Consensus       240 ~l~ed~~~n~~~es~~~~~~i~~~~~~~--~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~  317 (362)
T 1zcb_A          240 VLMEDRQTNRLTESLNIFETIVNNRVFS--NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG  317 (362)
T ss_dssp             EETTEEEEEHHHHHHHHHHHHHTCGGGT--TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHT
T ss_pred             cccccccccHHHHHHHHHHHHhcchhhC--CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHH
Confidence                   778999999998887653222  69999999999986322                 33455555542     


Q ss_pred             ------HhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          561 ------ELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       561 ------~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                            ..++ .+++|||++| ||.++|+++.+.+.
T Consensus       318 l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          318 KRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             TCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHH
Confidence                  1223 3789999999 99999999998775

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.19  E-value=4.1e-11  Score=125.09  Aligned_cols=81  Identities=17%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCC--CCCeEeCCccc-------------------CCceeEEEEeCCCCc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPV--HAPTRLPPDFY-------------------PDRVPVTIIDTSSSL   70 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~--~~~~~~~~~~~-------------------~~~~~~~i~Dt~G~~   70 (670)
                      ++|+|+|.||||||||+|+|++... ..++|.+  ..+... ..+.                   .....+.+|||||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~-~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV-VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE-EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee-EecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            6899999999999999999998652 2223321  111111 0111                   123579999999987


Q ss_pred             cch----hh---hHHHhccCCEEEEEEECCC
Q 005908           71 ENK----GK---LNEELKRADAVVLTYACNQ   94 (670)
Q Consensus        71 ~~~----~~---~~~~~~~ad~ii~v~d~~~   94 (670)
                      .+.    .+   ...+++.+|++++|+|+++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            642    12   3356899999999999975

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.18  E-value=1.7e-11  Score=120.16  Aligned_cols=153  Identities=16%  Similarity=0.105  Sum_probs=86.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC----------------eE--e--CCcc--------------cC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP----------------TR--L--PPDF--------------YP   56 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~----------------~~--~--~~~~--------------~~   56 (670)
                      +.++|+|+|++|||||||+++|+...+.....++...                ..  +  ...+              ..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999976543321111000                00  0  0000              00


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~  136 (670)
                      .+..+.++|++|.-...   ..+-...+.++.++|.........   .....   .  +.|.++|+||+|+.+.... ..
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~~-~~  184 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAVGA-DI  184 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHHTC-CH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchhHH-HH
Confidence            12256666776632110   011123455667777533211110   01111   2  5788999999998653222 12


Q ss_pred             hhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          137 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                       +........++...+++++||++|.|++++|+.+.+.+.
T Consensus       185 -~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          185 -KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             -HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence             233444444433347999999999999999999987653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.18  E-value=2.8e-11  Score=126.09  Aligned_cols=102  Identities=16%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc
Q 005908          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA  551 (670)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~  551 (670)
                      ..+.++||+|......     .....+|++++|+|++.+..++.+..   ..  .      +.|.++|+||+|+......
T Consensus       149 ~~i~liDTpG~~~~~~-----~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~------~~p~ivv~NK~Dl~~~~~~  212 (341)
T 2p67_A          149 YDVVIVETVGVGQSET-----EVARMVDCFISLQIAGGGDDLQGIKK---GL--M------EVADLIVINKDDGDNHTNV  212 (341)
T ss_dssp             CSEEEEEEECCTTHHH-----HHHTTCSEEEEEECC------CCCCH---HH--H------HHCSEEEECCCCTTCHHHH
T ss_pred             CCEEEEeCCCccchHH-----HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h------cccCEEEEECCCCCChHHH
Confidence            4677899999644332     24589999999999986543221111   11  1      3688999999999763222


Q ss_pred             HHHHHHHH---HHhC------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          552 VQDSARVT---QELG------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       552 ~~~~~~~~---~~~~------~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ....+++.   ..++      .++++++||++| |++++++.|.+.+.
T Consensus       213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            22222222   2223      346899999999 99999999998764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.17  E-value=3.6e-10  Score=129.09  Aligned_cols=116  Identities=15%  Similarity=0.165  Sum_probs=80.8

Q ss_pred             cce-EEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCCCC-------------CeEeCCcc-----cCCceeEEEE
Q 005908           11 TGV-RVVVVGDRGTGKSSLIAAAATES-------VPEKVPPVHA-------------PTRLPPDF-----YPDRVPVTII   64 (670)
Q Consensus        11 ~~~-kI~ivG~~~vGKSSLi~~l~~~~-------~~~~~~~~~~-------------~~~~~~~~-----~~~~~~~~i~   64 (670)
                      .++ +|+|+|+.++|||||..+|+...       -+.....+.+             ...+...+     ..+++.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            344 69999999999999999997321       0000000000             00011111     1246899999


Q ss_pred             eCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           65 DTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        65 Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      ||||+.+|.......++-+|++|+|+|+...-..+...  .++...+.  ++|.++++||+|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCc
Confidence            99999999999999999999999999988775555443  45555555  7999999999998643

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.17  E-value=4.4e-11  Score=138.66  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=84.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----------------C--CCcccceEEEEEE------------cCCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----------------A--PTTGEQYAVNVVD------------QPGG  470 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~----------------~--~t~~~~~~~~~vd------------~~g~  470 (670)
                      ....+|+|+|.+|+|||||+++|++.......                .  .|+........+.            ..+.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            45689999999999999999999875221111                0  1222221112222            2334


Q ss_pred             ceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (670)
Q Consensus       471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~  546 (670)
                      ...+.+|||+|+..|...  ...+++.+|++|+|+|++++.+++....|.... ..      ++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~--~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~------~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSE--VTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE------RIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHH--HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT------TCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc------CCCeEEEEECCCcc
Confidence            678889999999888776  788899999999999999998888766554433 32      69999999999986

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.16  E-value=1.5e-10  Score=116.15  Aligned_cols=111  Identities=12%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             eEEEEEecCChhhHhhhhc----hHhhcccccEEEEEEECCCcccHHHHHHHH----HHHHHhcCCCCCCCcEEEEEeCC
Q 005908          472 KKTLILQEIPEEGVKKILS----NKEALASCDVTIFVYDSSDEYSWKRTKELL----VEVARLGEDSGYGVPCLLIASKD  543 (670)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~----~~~~~~~ad~vllv~D~s~~~s~~~~~~~~----~~i~~~~~~~~~~~piilv~NK~  543 (670)
                      ..+.++|++|.........    ....+.. +++++++|++...+........    ......      +.|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence            3678899999866543210    1134566 8999999987544433322211    111111      58999999999


Q ss_pred             CCCCCccc---HH---HHHH---------------------HHHHhCCC-CcEEeecccC-ChHHHHHHHHHHHh
Q 005908          544 DLKPYTMA---VQ---DSAR---------------------VTQELGIE-PPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       544 Dl~~~~~~---~~---~~~~---------------------~~~~~~~~-~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      |+......   .+   ....                     +++.++.. +++++||++| |+++++++|.+.+.
T Consensus       182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            98764311   01   1111                     12344432 6999999999 99999999988764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.14  E-value=4.7e-11  Score=124.49  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-------hhHHHhccC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKRA   83 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a   83 (670)
                      ..+|+|||.||||||||+|+|++.+. +.++|.++... ....+...+.++.++||||......       ..-..++.+
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~-~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVT-VPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCE-EEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeee-eeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            46899999999999999999998763 33355433222 3344556778999999999754321       123567899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRG  129 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~  129 (670)
                      |++++|+|++++.....   .+..++....   ..+|.+++.||+|...
T Consensus       151 d~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~g  196 (376)
T 4a9a_A          151 NLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKGG  196 (376)
T ss_dssp             SEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred             CccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence            99999999988743332   2344454432   3678899999999753

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.14  E-value=5.3e-10  Score=123.29  Aligned_cols=113  Identities=13%  Similarity=0.102  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC---------------CCCC--C-----CcccceEEEEEEcCCCceEEEEEecCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFS---------------ENYA--P-----TTGEQYAVNVVDQPGGNKKTLILQEIP  481 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~---------------~~~~--~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g  481 (670)
                      -+|+|+|..++|||||..+|+...-.               ...+  +     .++..-....+.+.  ...+.++||+|
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDTPG  109 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLLDTPG  109 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEECCCC
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEEeCCC
Confidence            57999999999999999999722111               0000  0     01111112334443  47788999999


Q ss_pred             hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      +..|..-  ..+.++-+|++|+|+|+.++..-+....| +...++      ++|+++++||+|...
T Consensus       110 HvDF~~E--v~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~------~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          110 HQDFSED--TYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR------ATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGGCSHH--HHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT------TCCEEEEEECTTSCC
T ss_pred             cHHHHHH--HHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh------CCceEEEEecccchh
Confidence            9887765  67888999999999999999775544444 555554      799999999999865

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.05  E-value=7.9e-11  Score=117.61  Aligned_cols=89  Identities=10%  Similarity=0.040  Sum_probs=55.5

Q ss_pred             CCCCcc-chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH
Q 005908           66 TSSSLE-NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM  144 (670)
Q Consensus        66 t~G~~~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~  144 (670)
                      .||+.. ....+...+..+|+++.|+|+.++.+..+..  +.     .. ++|.++|+||+|+.+...   . +....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-----ll-~k~~iivlNK~DL~~~~~---~-~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-----FS-RKETIILLNKVDIADEKT---T-KKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-----CT-TSEEEEEEECGGGSCHHH---H-HHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-----hc-CCCcEEEEECccCCCHHH---H-HHHHHHH
Confidence            355542 2345668899999999999999887654321  11     12 789999999999975311   1 1112222


Q ss_pred             HHhccCCeEEEeCcccCCCchHHHH
Q 005908          145 QQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       145 ~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      .+.+  .++ .+||+++.|++++++
T Consensus        72 ~~~g--~~v-~iSa~~~~gi~~L~~   93 (262)
T 3cnl_A           72 KKQG--KRV-ITTHKGEPRKVLLKK   93 (262)
T ss_dssp             HHTT--CCE-EECCTTSCHHHHHHH
T ss_pred             HHcC--CeE-EEECCCCcCHHHHHH
Confidence            2333  256 999999999876654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.01  E-value=7.9e-10  Score=114.68  Aligned_cols=153  Identities=14%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHc------CCC--CCCCCCCCC-------C-eEeCC---------------------
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAAT------ESV--PEKVPPVHA-------P-TRLPP---------------------   52 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~------~~~--~~~~~~~~~-------~-~~~~~---------------------   52 (670)
                      .+...|+|+|++|+|||||++.+.+      ++.  ....+....       . .++..                     
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            4567899999999999999999973      331  111110000       0 00000                     


Q ss_pred             ---------cccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEe
Q 005908           53 ---------DFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC  123 (670)
Q Consensus        53 ---------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N  123 (670)
                               .+...++.+.|+||+|.....   ......+|++++|+|....+..+.+.    ..+.    ..|.+++.|
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlN  201 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVN  201 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEE
Confidence                     012257789999999976432   23457899999999976443221111    1111    235677889


Q ss_pred             CCCCCCCCCccchhhhhhHHHHHh---c-----cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          124 KLDLRGDHNATSLEEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       124 K~Dl~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      |+|+......  .....+.+....   .     ...+++.+||+++.|++++++.+.+..
T Consensus       202 K~Dl~~~~~~--s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          202 KADDGDGERR--ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             CCSTTCCHHH--HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             chhccCchhH--HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9997542211  111122222211   1     013689999999999999999988764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.00  E-value=1e-09  Score=113.79  Aligned_cols=153  Identities=12%  Similarity=0.128  Sum_probs=88.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCC-CCc-c----------------cceEEEEEEcC--------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA-PTT-G----------------EQYAVNVVDQP--------  468 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~-~t~-~----------------~~~~~~~vd~~--------  468 (670)
                      .....++|+|++|||||||+|.+.+      +....... ++. .                .........++        
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            4567899999999999999999983      33221110 100 0                00001111111        


Q ss_pred             ------------CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcE
Q 005908          469 ------------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (670)
Q Consensus       469 ------------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi  536 (670)
                                  .....+.++||+|...-.     ......+|++++|+|++.++..+.+..   .+.        ..|.
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~--------~~~~  196 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSE-----TAVADLTDFFLVLMLPGAGDELQGIKK---GIF--------ELAD  196 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----HHHHTTSSEEEEEECSCC------CCT---THH--------HHCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcch-----hhHHhhCCEEEEEEcCCCcccHHHHHH---HHh--------cccc
Confidence                        023456778999863211     123478999999999875432211111   111        2466


Q ss_pred             EEEEeCCCCCCCc-ccHHHHHHHHHHh---C------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          537 LLIASKDDLKPYT-MAVQDSARVTQEL---G------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       537 ilv~NK~Dl~~~~-~~~~~~~~~~~~~---~------~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ++|+||+|+.... ......+++....   .      .++++.+||++| |++++++.|.+...
T Consensus       197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            7788999976422 1222333443322   2      356899999999 99999999988765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.96  E-value=3.4e-10  Score=127.46  Aligned_cols=160  Identities=19%  Similarity=0.176  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCCCc-c------------cceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFS-----ENYAPTT-G------------EQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~-----~~~~~t~-~------------~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      -+|+|+|..++|||||..+|+...-.     .+...++ .            .......+.+.  .+.+.++||+|+..|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--NTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--SCBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--CEEEEEEECCCcHHH
Confidence            36999999999999999999732111     1111111 1            01111223333  356778999999887


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHH--------
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDS--------  555 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~--------  555 (670)
                      ..-  ..+.++-+|++|+|+|+..+..-+. ...++...++      ++|.++++||+|....+..  .+++        
T Consensus        81 ~~E--v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~------~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~  151 (638)
T 3j25_A           81 LAE--VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM------GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI  151 (638)
T ss_dssp             HHH--HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH------TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred             HHH--HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc------CCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence            765  6788899999999999999865444 3444455555      7999999999998652211  0000        


Q ss_pred             -----------------------HHH-----------------------------HHHhCCCCcEEeecccC-ChHHHHH
Q 005908          556 -----------------------ARV-----------------------------TQELGIEPPIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       556 -----------------------~~~-----------------------------~~~~~~~~~~~vSA~~g-~v~~l~~  582 (670)
                                             +.+                             .....+.|++..||++| |++.|++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd  231 (638)
T 3j25_A          152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE  231 (638)
T ss_dssp             CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred             cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence                                   000                             11223457999999999 9999999


Q ss_pred             HHHHHHhCCCCC
Q 005908          583 RIIWAAEHPHLN  594 (670)
Q Consensus       583 ~l~~~~~~~~~~  594 (670)
                      .+.+.++.|...
T Consensus       232 ~i~~~~p~p~~~  243 (638)
T 3j25_A          232 VITNKFYSSTHR  243 (638)
T ss_dssp             HHHHSCCCSGGG
T ss_pred             hhhccccCcccc
Confidence            999987665543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.92  E-value=5.5e-10  Score=116.85  Aligned_cols=93  Identities=13%  Similarity=0.093  Sum_probs=52.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC---------------ceEEEEEecCChhhH
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGV  485 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~---------------~~~~~i~d~~g~~~~  485 (670)
                      ...++|+|+|.||||||||+|+|++..+.....|+++.......+.+++.               ...+.+||++|....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999998764333344443333445555532               124778999997654


Q ss_pred             hh----h-hchHhhcccccEEEEEEECCCcccH
Q 005908          486 KK----I-LSNKEALASCDVTIFVYDSSDEYSW  513 (670)
Q Consensus       486 ~~----~-~~~~~~~~~ad~vllv~D~s~~~s~  513 (670)
                      .+    + .....+++.+|++++|+|+++..++
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            33    1 1256788999999999999875443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.86  E-value=3.3e-09  Score=108.37  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             hhhHhhhhchHhhcccccEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-c-HHHHHHH
Q 005908          482 EEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-A-VQDSARV  558 (670)
Q Consensus       482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~-~~~~~~~  558 (670)
                      ++++..+  ...++.++|++++|+|++++. ++..+.+|+..+...      ++|+++|+||+|+.+... . .++..++
T Consensus        66 ~er~~~l--~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~------~~~~ilV~NK~DL~~~~~v~~~~~~~~~  137 (302)
T 2yv5_A           66 EERKNLL--IRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF------KVEPVIVFNKIDLLNEEEKKELERWISI  137 (302)
T ss_dssp             CCCSCEE--ETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred             CChHHHH--hHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC------CCCEEEEEEcccCCCccccHHHHHHHHH
Confidence            4455666  567899999999999999985 888888998877653      799999999999987432 1 3445556


Q ss_pred             HHHhCCCCcEEeecccC-ChHHHHHHHH
Q 005908          559 TQELGIEPPIPVSMKSK-DLNNVFSRII  585 (670)
Q Consensus       559 ~~~~~~~~~~~vSA~~g-~v~~l~~~l~  585 (670)
                      .+..+++ ++++||++| |++++++.+.
T Consensus       138 ~~~~g~~-~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          138 YRDAGYD-VLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred             HHHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence            6667775 999999999 9999998654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.83  E-value=5e-08  Score=111.42  Aligned_cols=117  Identities=15%  Similarity=0.062  Sum_probs=78.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCCC-cc------------cceEEEEEEcCC-----CceEEEEEe
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFS-----ENYAPT-TG------------EQYAVNVVDQPG-----GNKKTLILQ  478 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~-----~~~~~t-~~------------~~~~~~~vd~~g-----~~~~~~i~d  478 (670)
                      +.-+|+|+|...+|||||..+|+...-.     .+...+ ..            ..-....+.+.+     +.+.+.++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            3458999999999999999999732100     011111 00            001112222322     246788999


Q ss_pred             cCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       479 ~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      |+|+..|..-  ....++-+|++|+|+|+..+..-+...-| +...+.      ++|.++++||+|...
T Consensus        92 TPGHvDF~~E--v~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~------~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           92 TPGHVDFTIE--VERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY------GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCSCTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH------TCCEEEEEECSSSTT
T ss_pred             CCCCcccHHH--HHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc------CCCeEEEEccccccC
Confidence            9999877664  67788999999999999998775544444 444444      799999999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.81  E-value=3.1e-08  Score=103.95  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=58.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCCcccceEEEEEEcCCC---------------ceEEEEEecCChhh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEG  484 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~t~~~~~~~~~vd~~g~---------------~~~~~i~d~~g~~~  484 (670)
                      ....+|+|+|++|||||||+|+|++.....+ ..|.++.....-.+.++|.               ...+.++|++|...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4568999999999999999999999876333 2343333333334445531               13466789988422


Q ss_pred             H----hhh-hchHhhcccccEEEEEEECCC
Q 005908          485 V----KKI-LSNKEALASCDVTIFVYDSSD  509 (670)
Q Consensus       485 ~----~~~-~~~~~~~~~ad~vllv~D~s~  509 (670)
                      .    +.+ ......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1    111 014566789999999999874

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.77  E-value=6.1e-09  Score=108.96  Aligned_cols=91  Identities=11%  Similarity=0.187  Sum_probs=49.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCC-CeEeCCcccC---------------CceeEEEEeCCCCccc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHA-PTRLPPDFYP---------------DRVPVTIIDTSSSLEN   72 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~-~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~   72 (670)
                      ...++|+|+|.||||||||+|+|++..+... +|.++. ...-.+.+..               ....+.+|||||+..+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            4568999999999999999999998865222 332111 1110011111               0235999999998764


Q ss_pred             hh-------hhHHHhccCCEEEEEEECCChhhHHH
Q 005908           73 KG-------KLNEELKRADAVVLTYACNQQSTLSR  100 (670)
Q Consensus        73 ~~-------~~~~~~~~ad~ii~v~d~~~~~s~~~  100 (670)
                      ..       .+..+++++|++++|+|+++..++.+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~  134 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH  134 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence            43       34578899999999999987665544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.67  E-value=1.1e-08  Score=103.79  Aligned_cols=86  Identities=17%  Similarity=0.207  Sum_probs=56.4

Q ss_pred             hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH---hccCC
Q 005908           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ---FREIE  151 (670)
Q Consensus        75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~  151 (670)
                      +....+.++|.+++|+|+.++..-.+..++++......  ++|.+||.||+|+.+...   ..+..+.+.+.   .+  .
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~g--~  151 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIG--Y  151 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHT--C
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh---hHHHHHHHHHHHHhCC--C
Confidence            34457889999999999987654444333455444444  899999999999976421   00112333333   33  3


Q ss_pred             eEEEeCcccCCCchHH
Q 005908          152 TCVECSATTMIQVPDV  167 (670)
Q Consensus       152 ~~~~~SA~~~~gi~~l  167 (670)
                      +++.+||+++.|++++
T Consensus       152 ~v~~~sa~~~~g~~~L  167 (307)
T 1t9h_A          152 DVYLTSSKDQDSLADI  167 (307)
T ss_dssp             CEEECCHHHHTTCTTT
T ss_pred             eEEEEecCCCCCHHHH
Confidence            6899999988887643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.67  E-value=1.3e-07  Score=99.14  Aligned_cols=85  Identities=15%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCC-CeEeCCcccC------------C---ceeEEEEeCCCCcc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHA-PTRLPPDFYP------------D---RVPVTIIDTSSSLE   71 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~-~~~~~~~~~~------------~---~~~~~i~Dt~G~~~   71 (670)
                      .+..+|+|+|++|||||||+|+|++...  ..++|.+.. ...-.+.+.+            .   ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4468999999999999999999999764  222443211 1110111111            1   13589999999643


Q ss_pred             -------chhhhHHHhccCCEEEEEEECCC
Q 005908           72 -------NKGKLNEELKRADAVVLTYACNQ   94 (670)
Q Consensus        72 -------~~~~~~~~~~~ad~ii~v~d~~~   94 (670)
                             ........++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22244567889999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.66  E-value=1.4e-08  Score=95.07  Aligned_cols=108  Identities=7%  Similarity=0.007  Sum_probs=68.0

Q ss_pred             CCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHH---HHHHHhc--CCCCCEEEEEeCC-CCCCCCCccchhhh
Q 005908           66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRL--EIKVPIIVAGCKL-DLRGDHNATSLEEV  139 (670)
Q Consensus        66 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~---~~~l~~~--~~~~pvilv~NK~-Dl~~~~~~~~~~~~  139 (670)
                      .+|+...+.+|..|+.++|++|||+|.+|.+.++ ..+.+   ...+...  ..+.|++|++||. |+...-.   ..+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams---~~EI  184 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYL  184 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC---HHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC---HHHH
Confidence            3478888999999999999999999999885444 33233   3333332  2478999999995 6754322   2222


Q ss_pred             hhHHHH-HhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          140 MGPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       140 ~~~~~~-~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      .+.+.. .......+..|||++|+|+.+-++|+.+.+..
T Consensus       185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            222211 11222368999999999999999999876643

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.62  E-value=4.1e-08  Score=91.93  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=67.2

Q ss_pred             ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCC-CCCCCcccHHHHHH
Q 005908          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKD-DLKPYTMAVQDSAR  557 (670)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~piilv~NK~-Dl~~~~~~~~~~~~  557 (670)
                      |++.++.+  |..|+.++|++|||+|++|.+.++ .+..+.++.......  ..+.|++|.+||. |+.. ...   ..+
T Consensus       111 GQ~klRpl--Wr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~-Ams---~~E  183 (227)
T 3l82_B          111 SRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMP---CFY  183 (227)
T ss_dssp             ------CC--HHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC-BCC---HHH
T ss_pred             cHHHHHHH--HHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC-CCC---HHH
Confidence            67788888  999999999999999999985543 333333333322211  1278999999996 6754 222   233


Q ss_pred             HHHHhCCC------CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          558 VTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       558 ~~~~~~~~------~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      +++.+++.      .+..|||++| |+.+-+++|.+.+..
T Consensus       184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            44444331      3789999999 999999999887654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.49  E-value=2.5e-07  Score=100.17  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=87.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHH------cCCC--CCC---CCCC------------CCCeEeCC-------------c
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAA------TESV--PEK---VPPV------------HAPTRLPP-------------D   53 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~------~~~~--~~~---~~~~------------~~~~~~~~-------------~   53 (670)
                      .+...|+|+|.+||||||++++|.      +.+.  +..   .+..            ........             .
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      4431  110   0100            00000000             0


Q ss_pred             ccCCceeEEEEeCCCCccch-hhhH---HH--hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCE-EEEEeCCC
Q 005908           54 FYPDRVPVTIIDTSSSLENK-GKLN---EE--LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLD  126 (670)
Q Consensus        54 ~~~~~~~~~i~Dt~G~~~~~-~~~~---~~--~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~NK~D  126 (670)
                      +...++.+.|+||||..... ....   ..  +..+|.+++|+|++.......    ....+..   .+|+ ++|.||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCc
Confidence            11156789999999976422 1111   11  237899999999887543221    2333333   2575 89999999


Q ss_pred             CCCCCCccchhhhhhHHHHHhcc----------------CCeEEEeCcccCCC-chHHHHHHHHH
Q 005908          127 LRGDHNATSLEEVMGPIMQQFRE----------------IETCVECSATTMIQ-VPDVFYYAQKA  174 (670)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~SA~~~~g-i~~l~~~i~~~  174 (670)
                      .......      ...+...++.                +.+.+.+|+..|.| +.++++.+.+.
T Consensus       252 ~~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            8643221      1112222221                11334579999999 99999888664

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.48  E-value=3.5e-07  Score=94.59  Aligned_cols=83  Identities=18%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-CeEEEeC
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECS  157 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S  157 (670)
                      .+.++|.+++|... ++..-....++++......  ++|.+||.||+|+.+...    .+..+.+...|... .+++.+|
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~~G~~v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRNIGYRVLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----HHHHHHHHHHHHTTTCCEEECB
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----HHHHHHHHHHHHhCCCcEEEEe
Confidence            36789999988765 4543333333455444444  788999999999975321    11123333333211 3689999


Q ss_pred             cccCCCchHHH
Q 005908          158 ATTMIQVPDVF  168 (670)
Q Consensus       158 A~~~~gi~~l~  168 (670)
                      |+++.|++++.
T Consensus       200 a~~~~gl~~L~  210 (358)
T 2rcn_A          200 SHTQDGLKPLE  210 (358)
T ss_dssp             TTTTBTHHHHH
T ss_pred             cCCCcCHHHHH
Confidence            99999886544

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.45  E-value=2.9e-07  Score=99.73  Aligned_cols=153  Identities=12%  Similarity=0.029  Sum_probs=87.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEEcC-------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVDQP-------------  468 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~------~~~~~~~~~~t~~-------------~~~~~~~vd~~-------------  468 (670)
                      ..+..|+|+|.+||||||++++|.      +.....+...+.+             ..+.+....+.             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345789999999999999999999      5443322111100             01111111000             


Q ss_pred             --CCceEEEEEecCChhh-----HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcE-EEEE
Q 005908          469 --GGNKKTLILQEIPEEG-----VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIA  540 (670)
Q Consensus       469 --g~~~~~~i~d~~g~~~-----~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~  540 (670)
                        .....+.++||+|...     ...+..... ...+|.+++|+|++.+..   .......+..       ..|+ ++|+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~---~~~~a~~~~~-------~~~i~gvVl  247 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQA---CEAQAKAFKD-------KVDVASVIV  247 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTT---HHHHHHHHHH-------HHCCCCEEE
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEecccccc---HHHHHHHHHh-------hcCceEEEE
Confidence              0234677899988532     111211111 237899999999988643   2222333332       2564 8899


Q ss_pred             eCCCCCCCcccHHHHHHHHHHhCCC-----------------CcEEeecccC-C-hHHHHHHHHHH
Q 005908          541 SKDDLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWA  587 (670)
Q Consensus       541 NK~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSA~~g-~-v~~l~~~l~~~  587 (670)
                      ||+|.......   ...+....+.+                 |.+.+||.+| | +.+|++.+.+.
T Consensus       248 NK~D~~~~~g~---~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          248 TKLDGHAKGGG---ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ECTTSCCCCTH---HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             eCCccccchHH---HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99998753221   22233344332                 3456899999 8 99999999876

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.45  E-value=2.6e-07  Score=96.80  Aligned_cols=98  Identities=16%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH----H
Q 005908          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS----A  556 (670)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~----~  556 (670)
                      ..+.|.++  ...+++.+|++++|+|++++.     ..|...+.++..    ++|+++|+||+|+.+.....+..    .
T Consensus        55 ~~e~f~~~--l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~----~~p~ilV~NK~DL~~~~~~~~~~~~~l~  123 (368)
T 3h2y_A           55 TDDDFLRI--LNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG----NNKVLLVGNKADLIPKSVKHDKVKHWMR  123 (368)
T ss_dssp             -CHHHHHH--HHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS----SSCEEEEEECGGGSCTTSCHHHHHHHHH
T ss_pred             CHHHHHHH--HHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC----CCcEEEEEEChhcCCcccCHHHHHHHHH
Confidence            44677777  667788899999999999852     456666666543    68999999999998754433333    3


Q ss_pred             HHHHHhCCC--CcEEeecccC-ChHHHHHHHHHHHh
Q 005908          557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       557 ~~~~~~~~~--~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      .+++..++.  +++++||++| |++++++.+.+...
T Consensus       124 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          124 YSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            446667773  5899999999 99999999987653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.42  E-value=1.7e-07  Score=92.29  Aligned_cols=110  Identities=7%  Similarity=-0.015  Sum_probs=73.0

Q ss_pred             CCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHH--HHHHHHHhc--CCCCCEEEEEeC-CCCCCCCCccchhhhh
Q 005908           66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS--YWLPELRRL--EIKVPIIVAGCK-LDLRGDHNATSLEEVM  140 (670)
Q Consensus        66 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~--~~~~~l~~~--~~~~pvilv~NK-~Dl~~~~~~~~~~~~~  140 (670)
                      .+|+...+.+|..|+.++|++|||+|.+|++.++...+  .+...+...  ..+.|++|.+|| .|+...-.   ..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHHH
Confidence            46888899999999999999999999999865442211  123444321  248999999997 58864322   22222


Q ss_pred             hHHHH-HhccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       141 ~~~~~-~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      +.+.. .......+..|||.+|+|+.+-++++.+.+...
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            22211 112223689999999999999999999887543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.40  E-value=2.4e-06  Score=90.26  Aligned_cols=159  Identities=13%  Similarity=0.036  Sum_probs=87.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCCCCCeEeCCcccCCc-eeEEEEeCCCCccchhhhHH-----Hhcc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLENKGKLNE-----ELKR   82 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~-----~~~~   82 (670)
                      ...|+|+|++|+|||||+|.|.+-.....   .......++....+.... -.+.++|++|..........     .+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            34899999999999999999998432111   011000111011111111 25899999996432222222     2344


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC-------CCCc--cchhhhhhHHHH----Hhc-
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------DHNA--TSLEEVMGPIMQ----QFR-  148 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~-------~~~~--~~~~~~~~~~~~----~~~-  148 (670)
                      .+.+++ ++..... -..+  .+...+...  ++|+++|.||.|+.-       -+..  ....+.+..+..    +.+ 
T Consensus       149 ~~~~~~-lS~G~~~-kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRFK-KNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCCC-HHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCcc-HHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            566665 7754211 2222  256666655  789999999999641       1111  011222233321    111 


Q ss_pred             cCCeEEEeCc--ccCCCchHHHHHHHHHHc
Q 005908          149 EIETCVECSA--TTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       149 ~~~~~~~~SA--~~~~gi~~l~~~i~~~~~  176 (670)
                      ....++.+|+  ..+.|++++.+.+.+.+.
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence            1235799999  667789999999987763

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.37  E-value=1.1e-06  Score=92.87  Aligned_cols=155  Identities=16%  Similarity=0.152  Sum_probs=87.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC----CCC--CcccceEEEEEEcCCCceEEEEEecCChhh----Hhhhhch
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN----YAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILSN  491 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~----~~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~~~~  491 (670)
                      ....++|+|++|||||||+|.+.|-.....    ...  ++...   .....+ ....+.++|.+|-..    ..... .
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~---~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L-~  142 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER---HPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL-E  142 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC---EEEECS-SCTTEEEEECCCGGGSSCCHHHHH-H
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE---Eecccc-ccCCeeehHhhcccchHHHHHHHH-H
Confidence            446899999999999999999998432211    111  11111   122222 222455688877421    11110 1


Q ss_pred             HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC------------CCcccHHHHHHHH
Q 005908          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK------------PYTMAVQDSARVT  559 (670)
Q Consensus       492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~------------~~~~~~~~~~~~~  559 (670)
                      ...+...+.+++ ++...+ . .....+...+...      ++|+++|.||.|+.            ......+.+.++.
T Consensus       143 ~~~L~~~~~~~~-lS~G~~-~-kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~  213 (413)
T 1tq4_A          143 KMKFYEYDFFII-ISATRF-K-KNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  213 (413)
T ss_dssp             HTTGGGCSEEEE-EESSCC-C-HHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             HcCCCccCCeEE-eCCCCc-c-HHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence            122344566655 777532 1 2222334444443      68999999999874            1111133344443


Q ss_pred             H----HhC--CCCcEEeec--ccC-ChHHHHHHHHHHHhC
Q 005908          560 Q----ELG--IEPPIPVSM--KSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       560 ~----~~~--~~~~~~vSA--~~g-~v~~l~~~l~~~~~~  590 (670)
                      .    +.+  ...++.+|+  ..+ |++++.+.+.+.+..
T Consensus       214 ~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          214 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             HHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence            1    222  345799999  667 899999999988754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.36  E-value=3.6e-07  Score=96.46  Aligned_cols=113  Identities=18%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCC-CCCCeE--eCCcccCCc--eeEEEEeCCCCccch-------------
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTR--LPPDFYPDR--VPVTIIDTSSSLENK-------------   73 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~-~~~~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~-------------   73 (670)
                      ++++|+|++|+|||||+|.|++..+... ... ......  +...+....  ..+.++|++|.....             
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            4699999999999999999998764322 110 111111  222222222  368999999875321             


Q ss_pred             -hhhHHHh-------------ccC--C-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           74 -GKLNEEL-------------KRA--D-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        74 -~~~~~~~-------------~~a--d-~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                       ..+..++             .++  | +++|+.|....-+..++  .+++.+.   .++|+|+|.||+|....
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence             1111111             112  3 35566675544433332  2555554   47999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.32  E-value=5.7e-07  Score=94.33  Aligned_cols=99  Identities=20%  Similarity=0.240  Sum_probs=71.9

Q ss_pred             ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHH----
Q 005908          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----  556 (670)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~----  556 (670)
                      .++.|.++  ...+++.++++++|+|++++.+     .|...+.++..    ++|+++|+||+|+.+.....+...    
T Consensus        57 ~~e~f~~~--L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~----~~piilV~NK~DLl~~~~~~~~~~~~l~  125 (369)
T 3ec1_A           57 DDDDFLSM--LHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPKLLRWMR  125 (369)
T ss_dssp             --CHHHHH--HHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT----TSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred             CHHHHHHH--HHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC----CCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence            46678876  5667789999999999999753     34444444433    589999999999987543333333    


Q ss_pred             HHHHHhCCC--CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       557 ~~~~~~~~~--~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++++..+..  +++.+||++| |++++++.+.+....
T Consensus       126 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~  162 (369)
T 3ec1_A          126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG  162 (369)
T ss_dssp             HHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence            335566763  5899999999 999999999887643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.32  E-value=2e-07  Score=91.67  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=69.3

Q ss_pred             ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHH---HHH-HhcCCCCCCCcEEEEEeC-CCCCCCcccHHHH
Q 005908          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV---EVA-RLGEDSGYGVPCLLIASK-DDLKPYTMAVQDS  555 (670)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~---~i~-~~~~~~~~~~piilv~NK-~Dl~~~~~~~~~~  555 (670)
                      |++.++.+  +..|+.++|++|+|+|++|++.++ ....+.   .+. ......  +.|++|.+|| -|+... ..   .
T Consensus       196 GQ~~lRpl--Wr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~--~apLLVfANKkQDlp~A-ms---~  266 (312)
T 3l2o_B          196 SRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSS--GRPLLVLSCISQGDVKR-MP---C  266 (312)
T ss_dssp             -CCCCCHH--HHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCT--TCCEEEEEEESSTTSCB-CC---H
T ss_pred             CHHHHHHH--HHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcC--CCeEEEEeCCcccccCC-CC---H
Confidence            56677777  899999999999999999986544 222222   221 111011  7999999997 587542 22   2


Q ss_pred             HHHHHHhCCC------CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          556 ARVTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       556 ~~~~~~~~~~------~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      .++++.+++.      .+..+||++| |+.+-+++|.+.+..
T Consensus       267 ~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          267 FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            3344444331      3789999999 999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.29  E-value=1.7e-06  Score=91.34  Aligned_cols=142  Identities=15%  Similarity=0.181  Sum_probs=68.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC----CCcccceEEEEEEcCCCceEEEEEecCChhh--------------
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------------  484 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~--------------  484 (670)
                      .++++|+|++|+|||||+|.|+|..+.....    +.............++-...+.++|++|-..              
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            4679999999999999999999875432111    1111111111222232223556677665211              


Q ss_pred             ----HhhhhchH-------hhccccc---EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc
Q 005908          485 ----VKKILSNK-------EALASCD---VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (670)
Q Consensus       485 ----~~~~~~~~-------~~~~~ad---~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~  550 (670)
                          +.......       ....+++   +++++.|+..+.+-.+ ..+++.+.     .  +.|+|+|.||+|......
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~-----~--~~~vI~Vi~KtD~Lt~~E  193 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD-----S--KVNIIPIIAKADAISKSE  193 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC-----S--CSEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh-----h--CCCEEEEEcchhccchHH
Confidence                11100000       0112333   4667778766544332 22333332     1  699999999999887443


Q ss_pred             cHHHHHHHHH---HhCCCCcEEeecc
Q 005908          551 AVQDSARVTQ---ELGIEPPIPVSMK  573 (670)
Q Consensus       551 ~~~~~~~~~~---~~~~~~~~~vSA~  573 (670)
                      .......+.+   ..++. ++.+|.-
T Consensus       194 ~~~l~~~I~~~L~~~gi~-I~~is~~  218 (427)
T 2qag_B          194 LTKFKIKITSELVSNGVQ-IYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHHBTTBCC-CCCCC--
T ss_pred             HHHHHHHHHHHHHHcCCc-EEecCCC
Confidence            3332233333   23443 7777753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.24  E-value=1.4e-06  Score=87.04  Aligned_cols=113  Identities=20%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCC---------CCCCCCCeEeCCcccCC--ceeEEEEeCCCCccchh------
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK---------VPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLENKG------   74 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~------   74 (670)
                      .++++|+|++|+|||||+|.|++......         .+.......+...+...  ...+.++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999987542211         11111111111111112  23689999998642110      


Q ss_pred             hhH--------H--------------HhccCCEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC
Q 005908           75 KLN--------E--------------ELKRADAVVLTYACN-QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (670)
Q Consensus        75 ~~~--------~--------------~~~~ad~ii~v~d~~-~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~  129 (670)
                      ...        .              .+..+++.++++|.. .+-+-.+.  .++..+...   .++|+|.||+|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~~---~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSKV---VNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHTT---SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHhc---CcEEEEEeccccCC
Confidence            011        0              122368889999854 33332232  356666543   89999999999764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.19  E-value=3.2e-06  Score=84.51  Aligned_cols=119  Identities=14%  Similarity=0.215  Sum_probs=62.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------CCcccceEEEE-EEcCCCceEEEEEecCChh---------
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA---------PTTGEQYAVNV-VDQPGGNKKTLILQEIPEE---------  483 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~---------~t~~~~~~~~~-vd~~g~~~~~~i~d~~g~~---------  483 (670)
                      .++++|+|++|+|||||+|.|+|........         .+... ..+.. ..-++-...+.++|++|-.         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~-~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI-KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC-CEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee-eeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            4789999999999999999999754332110         11111 11111 1111112244556665510         


Q ss_pred             -hHhhhh--c--------------hHhhcccccEEEEEEECC-CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 005908          484 -GVKKIL--S--------------NKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL  545 (670)
Q Consensus       484 -~~~~~~--~--------------~~~~~~~ad~vllv~D~s-~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl  545 (670)
                       ......  .              .+-.+..+++.++++|.. .+.+-. ....++.+..       ..++|+|.||+|.
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L~~-------~~~vI~Vi~K~D~  152 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHLSK-------VVNIIPVIAKADT  152 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHHHT-------TSEEEEEETTGGG
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHHHh-------cCcEEEEEecccc
Confidence             011100  0              011233468899999965 443322 2344444433       3799999999998


Q ss_pred             CCCcc
Q 005908          546 KPYTM  550 (670)
Q Consensus       546 ~~~~~  550 (670)
                      .....
T Consensus       153 lt~~e  157 (270)
T 3sop_A          153 MTLEE  157 (270)
T ss_dssp             SCHHH
T ss_pred             CCHHH
Confidence            87443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.03  E-value=5.7e-06  Score=83.25  Aligned_cols=86  Identities=16%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             hHhhcccccEEEEEEECCCcccHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcE
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPI  568 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  568 (670)
                      ....+..+|+|+.|+|+.++.+..  .+.+++       .    ++|+++|+||+|+.+... .+...++.+..+. +++
T Consensus        17 ~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~----~kp~ilVlNK~DL~~~~~-~~~~~~~~~~~g~-~~i   83 (282)
T 1puj_A           17 VTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------K----NKPRIMLLNKADKADAAV-TQQWKEHFENQGI-RSL   83 (282)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------S----SSCEEEEEECGGGSCHHH-HHHHHHHHHTTTC-CEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------C----CCCEEEEEECcccCCHHH-HHHHHHHHHhcCC-cEE
Confidence            677899999999999999986653  233322       1    699999999999987321 1122222333455 489


Q ss_pred             EeecccC-ChHHHHHHHHHHHh
Q 005908          569 PVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       569 ~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ++||++| |++++++.+.+.+.
T Consensus        84 ~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           84 SINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EEECCCcccHHHHHHHHHHHHH
Confidence            9999999 99999988877653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.97  E-value=6.2e-06  Score=87.91  Aligned_cols=111  Identities=22%  Similarity=0.254  Sum_probs=64.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC------C--CCC-C--CCCC------------------CCCeEeCCcc------cC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE------S--VPE-K--VPPV------------------HAPTRLPPDF------YP   56 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~------~--~~~-~--~~~~------------------~~~~~~~~~~------~~   56 (670)
                      ...|+|+|.+||||||+++.|...      +  +.. +  .+..                  ...+.-+..+      ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            457999999999999999999752      2  100 0  0000                  0000000000      12


Q ss_pred             CceeEEEEeCCCCccchhh-hH---H--HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-C-EEEEEeCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGK-LN---E--ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-P-IIVAGCKLDLR  128 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~-~~---~--~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-p-vilv~NK~Dl~  128 (670)
                      .++.+.|+||||....... ..   .  .+..+|.+++|+|.+....   ... ....++   ... | ..+|.||+|..
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK---EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh---hcccCCeEEEEeCCCCc
Confidence            5678999999997643221 11   1  1236899999999865542   111 222222   245 5 88999999975


Q ss_pred             C
Q 005908          129 G  129 (670)
Q Consensus       129 ~  129 (670)
                      .
T Consensus       252 ~  252 (432)
T 2v3c_C          252 A  252 (432)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.96  E-value=0.0001  Score=78.03  Aligned_cols=141  Identities=14%  Similarity=0.090  Sum_probs=80.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc------CCC---CCC--CCC----------CCCCeEeCCc---------------c
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAAT------ESV---PEK--VPP----------VHAPTRLPPD---------------F   54 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~------~~~---~~~--~~~----------~~~~~~~~~~---------------~   54 (670)
                      +...|+++|.+||||||++..|..      .+.   ..+  .++          ..+.......               .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999872      221   100  010          0000011000               0


Q ss_pred             cCCceeEEEEeCCCCccchh-hhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                      ...++.+.|+||+|...... ...     .....+|.+++|+|++.......    ....+...  -.+..+|.||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence            01357899999999654222 111     22346899999999876543322    23334433  34567999999986


Q ss_pred             CCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ...      .....+....+  .|+..++.  |++++++
T Consensus       253 ~~g------G~~ls~~~~~g--~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          253 AKG------GGALSAVAATG--APIKFIGT--GEKIDDI  281 (443)
T ss_dssp             SSH------HHHHHHHHTTC--CCEEEEEC--SSSTTCE
T ss_pred             ccc------cHHHHHHHHHC--CCEEEEEc--CCChHHh
Confidence            421      22233344444  25666664  8888654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.87  E-value=6.8e-06  Score=87.62  Aligned_cols=151  Identities=15%  Similarity=0.069  Sum_probs=83.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC------CCCCCCC-------------------------C-Ccccc--eEEEEEEcC
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER------PFSENYA-------------------------P-TTGEQ--YAVNVVDQP  468 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~------~~~~~~~-------------------------~-t~~~~--~~~~~vd~~  468 (670)
                      +..|+|+|.+||||||+++.|...      .......                         + ++.+.  .....+...
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            457999999999999999999862      1110000                         0 11110  000001111


Q ss_pred             CCceEEEEEecCChhh-----HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCC-c-EEEEEe
Q 005908          469 GGNKKTLILQEIPEEG-----VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-P-CLLIAS  541 (670)
Q Consensus       469 g~~~~~~i~d~~g~~~-----~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-p-iilv~N  541 (670)
                       ....+.++||+|...     +..+. ....+..+|.+++|+|++.+..   .......+..       .. | ..+|.|
T Consensus       179 -~~~D~vIIDT~G~~~~~~~l~~~l~-~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-------~~~~i~gvVln  246 (432)
T 2v3c_C          179 -KKADVLIIDTAGRHKEEKGLLEEMK-QIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-------AVGEIGSIIVT  246 (432)
T ss_dssp             -SSCSEEEEECCCSCSSHHHHHHHHH-HTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-------TSCSCEEEEEE
T ss_pred             -hCCCEEEEcCCCCccccHHHHHHHH-HHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-------cccCCeEEEEe
Confidence             234567788888532     11111 1223347899999999987632   2222222221       35 5 789999


Q ss_pred             CCCCCCCcccHHHHHHHHHHhCCC-----------------CcEEeecccC-C-hHHHHHHHHHHH
Q 005908          542 KDDLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWAA  588 (670)
Q Consensus       542 K~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSA~~g-~-v~~l~~~l~~~~  588 (670)
                      |+|.....   ..+..+....+.+                 |...+|+..| | +..+++.+.+.+
T Consensus       247 K~D~~~~~---g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~  309 (432)
T 2v3c_C          247 KLDGSAKG---GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV  309 (432)
T ss_dssp             CSSSCSTT---HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred             CCCCccch---HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            99986422   2233355555443                 2345677788 7 777777665543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.82  E-value=9.8e-06  Score=80.56  Aligned_cols=57  Identities=28%  Similarity=0.234  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE   71 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   71 (670)
                      ++|+++|.+|||||||+|+|.+....... .+.+.++....+. .+..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~-~~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFS-LENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEE-eCCCEEEEECCCccc
Confidence            69999999999999999999987753321 1112222111111 134689999999764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.81  E-value=8.9e-05  Score=78.56  Aligned_cols=137  Identities=12%  Similarity=0.019  Sum_probs=75.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCCCCcc-------------cceEEEEEEcCC-------------
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTG-------------EQYAVNVVDQPG-------------  469 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~~t~~-------------~~~~~~~vd~~g-------------  469 (670)
                      .+..|+++|.+||||||++..|..      .........+.+             ....+.......             
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999873      222111100100             011111110000             


Q ss_pred             --CceEEEEEecCChh-----hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 005908          470 --GNKKTLILQEIPEE-----GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK  542 (670)
Q Consensus       470 --~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK  542 (670)
                        ....+.++||+|..     ....+. .......+|.+++|+|++.+..   .......+...      -.+..+|+||
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~-~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~------~~i~gVIlTK  248 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMK-QISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA------TPIGSIIVTK  248 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHH-HHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS------CTTEEEEEEC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHH-HHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh------CCCeEEEEEC
Confidence              12456778888831     222221 2233446899999999987633   23333333332      2455689999


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908          543 DDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       543 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      +|...+.   ..+..+....+.+ +.+++.
T Consensus       249 lD~~~~g---G~~ls~~~~~g~P-I~fig~  274 (443)
T 3dm5_A          249 LDGSAKG---GGALSAVAATGAP-IKFIGT  274 (443)
T ss_dssp             CSSCSSH---HHHHHHHHTTCCC-EEEEEC
T ss_pred             CCCcccc---cHHHHHHHHHCCC-EEEEEc
Confidence            9987632   2344455556655 776765

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.79  E-value=2.2e-05  Score=86.35  Aligned_cols=63  Identities=19%  Similarity=0.078  Sum_probs=42.5

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcc------cCCceeEEEEeCCCCcc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF------YPDRVPVTIIDTSSSLE   71 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~Dt~G~~~   71 (670)
                      ..+..+|+|+|.||||||||+|+|++.......+++....+.....      ...+..+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3466889999999999999999999987432333322121111110      23467899999999764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.57  E-value=0.00041  Score=73.47  Aligned_cols=140  Identities=14%  Similarity=0.094  Sum_probs=78.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHH------cCCC--CC-C--CCC----------CCCCeEeCC---------------cc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAA------TESV--PE-K--VPP----------VHAPTRLPP---------------DF   54 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~------~~~~--~~-~--~~~----------~~~~~~~~~---------------~~   54 (670)
                      +...|+++|.+||||||++..|.      +.+.  .. +  .++          ..+......               ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            45678999999999999999986      2221  00 0  000          000000000               01


Q ss_pred             cCCceeEEEEeCCCCcc--ch-hhhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Q 005908           55 YPDRVPVTIIDTSSSLE--NK-GKLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD  126 (670)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~--~~-~~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D  126 (670)
                      ...++.+.|+||||...  .. ....     ...-.+|.+++|+|........+    ....+.+.  -.+..+|.||.|
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD  249 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMD  249 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEeccc
Confidence            12467899999999643  11 1111     11235699999999876543222    33344433  356789999999


Q ss_pred             CCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908          127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      ....     . .....+....+  .|+..++.  |+++++
T Consensus       250 ~~a~-----~-G~als~~~~~g--~Pi~fig~--Ge~v~d  279 (433)
T 3kl4_A          250 GTAK-----G-GGALSAVVATG--ATIKFIGT--GEKIDE  279 (433)
T ss_dssp             GCSC-----H-HHHHHHHHHHT--CEEEEEEC--CSSSSC
T ss_pred             cccc-----c-hHHHHHHHHHC--CCEEEEEC--CCChHh
Confidence            7632     1 12233334444  36766665  777753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.45  E-value=0.0019  Score=65.16  Aligned_cols=141  Identities=16%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCCCCcc-----------cceEEEEEEcC-----------------
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTG-----------EQYAVNVVDQP-----------------  468 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~~t~~-----------~~~~~~~vd~~-----------------  468 (670)
                      .-.|+++|++|+||||++..+.+      .........+.+           ....+.++..+                 
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999873      222111101000           00001111100                 


Q ss_pred             CCceEEEEEecCChhh--Hh-hhhc---hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 005908          469 GGNKKTLILQEIPEEG--VK-KILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIAS  541 (670)
Q Consensus       469 g~~~~~~i~d~~g~~~--~~-~~~~---~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~N  541 (670)
                      .....+.++|++|...  .. .+..   .......+|.+++|+|++.+.   +.....+.+..       ..| ..+|.|
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-------~~~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-------ASKIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-------TCTTEEEEEE
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-------hCCCCEEEEe
Confidence            0234577889888644  21 1100   112345789999999987542   22223333332       245 678899


Q ss_pred             CCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       542 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      |+|....   ...+..+....+.+ +.+++  +| ++++
T Consensus       248 k~D~~~~---~g~~~~~~~~~~~p-i~~i~--~Ge~v~d  280 (297)
T 1j8m_F          248 KMDGTAK---GGGALSAVAATGAT-IKFIG--TGEKIDE  280 (297)
T ss_dssp             CGGGCTT---HHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             CCCCCcc---hHHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence            9997642   33445566667765 77776  45 5543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.44  E-value=9.6e-05  Score=74.78  Aligned_cols=85  Identities=18%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             hHhhcccccEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhCCCC
Q 005908          491 NKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELGIEP  566 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~  566 (670)
                      .+..+.++|.+++|+|+.++. +...+.+++......      ++|.++|+||+||.+....   .+...+..+..+.+ 
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-  152 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-  152 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe-
Confidence            345789999999999999764 333334444333322      6899999999999875321   22233333445764 


Q ss_pred             cEEeecccC-ChHHHHH
Q 005908          567 PIPVSMKSK-DLNNVFS  582 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~  582 (670)
                      ++.+||++| |+++|++
T Consensus       153 v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EEECCHHHHTTCTTTGG
T ss_pred             EEEEecCCCCCHHHHHh
Confidence            999999998 8877665

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.44  E-value=0.00012  Score=73.95  Aligned_cols=139  Identities=16%  Similarity=0.144  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH------cCCC---CCC--CCCCC----------CCeEeCC---------------ccc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAA------TESV---PEK--VPPVH----------APTRLPP---------------DFY   55 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~------~~~~---~~~--~~~~~----------~~~~~~~---------------~~~   55 (670)
                      .-.|+++|.+|+||||++..|.      +.+.   ..+  .+...          +...+..               ...
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5578899999999999999986      2221   000  01000          0000000               001


Q ss_pred             CCceeEEEEeCCCCcc--chh-hhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCC
Q 005908           56 PDRVPVTIIDTSSSLE--NKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLD  126 (670)
Q Consensus        56 ~~~~~~~i~Dt~G~~~--~~~-~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D  126 (670)
                      ..++.+.|+||||...  ... .+.     ..+..+|.+++|+|......   ..+ ..+.+..   ..| ..+|.||.|
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~~---~~~i~gvVlnk~D  250 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYD-LASKFNQ---ASKIGTIIITKMD  250 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHH-HHHHHHH---TCTTEEEEEECGG
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHH-HHHHHHh---hCCCCEEEEeCCC
Confidence            1567899999999766  321 221     23457899999999764322   111 2233332   355 678999999


Q ss_pred             CCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908          127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ....      ......+....+  .|+..++  .|++++++
T Consensus       251 ~~~~------~g~~~~~~~~~~--~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          251 GTAK------GGGALSAVAATG--ATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             GCTT------HHHHHHHHHTTT--CCEEEEE--CSSSTTCE
T ss_pred             CCcc------hHHHHHHHHHHC--cCEEEEe--CCCChhhc
Confidence            7532      122334455554  2565555  67777643

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.44  E-value=0.00017  Score=79.44  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=40.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcc---cceEEEEEEcC-CCceEEEEEecCCh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG---EQYAVNVVDQP-GGNKKTLILQEIPE  482 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~---~~~~~~~vd~~-g~~~~~~i~d~~g~  482 (670)
                      ....++|+|+|.||||||||+|+|+|........+|+.   .......+..+ +....+.++||+|-
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi  101 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL  101 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence            45678999999999999999999999875432222221   11211111121 23456778899885

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.39  E-value=0.00049  Score=72.87  Aligned_cols=137  Identities=15%  Similarity=0.044  Sum_probs=74.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEE---------------c
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVD---------------Q  467 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~------~~~~~~~~~~t~~-------------~~~~~~~vd---------------~  467 (670)
                      .+..|+++|++||||||++..|.      +.........+.+             ....+....               .
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            35678999999999999999987      2222111000000             001110000               0


Q ss_pred             CCCceEEEEEecCChhh-------HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 005908          468 PGGNKKTLILQEIPEEG-------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA  540 (670)
Q Consensus       468 ~g~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~  540 (670)
                      ......+.++||+|...       ...+.... .....|.+++|+|++.+..   .......+...      -.+..+|+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~-~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~------~~~~gVIl  245 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY-DVLKPDDVILVIDASIGQK---AYDLASRFHQA------SPIGSVII  245 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH-HHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH------CSSEEEEE
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHH-HhhCCcceEEEEeCccchH---HHHHHHHHhcc------cCCcEEEE
Confidence            00134566788888422       11121111 2235689999999987633   23333444333      25678899


Q ss_pred             eCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908          541 SKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       541 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      ||+|....   ...+..+....+.| +.+++.
T Consensus       246 TKlD~~a~---~G~als~~~~~g~P-i~fig~  273 (433)
T 3kl4_A          246 TKMDGTAK---GGGALSAVVATGAT-IKFIGT  273 (433)
T ss_dssp             ECGGGCSC---HHHHHHHHHHHTCE-EEEEEC
T ss_pred             eccccccc---chHHHHHHHHHCCC-EEEEEC
Confidence            99997752   33445555666765 777775

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.35  E-value=0.00053  Score=76.59  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      ..|+|+|++|+|||||++.+.|-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999999874

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=97.20  E-value=0.0014  Score=59.69  Aligned_cols=137  Identities=17%  Similarity=0.292  Sum_probs=94.5

Q ss_pred             cccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCC-CCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHH
Q 005908          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (670)
Q Consensus       189 ~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~-~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~  267 (670)
                      .+.+.....++++|...|.+++|.++..++...-.. ++. .+...++..+....         +..++++.|+.++...
T Consensus        18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~l~~~~---------dg~i~~~eF~~~~~~~   87 (166)
T 2mys_B           18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAA-MGRLNVKNEELDAMIKEA---------SGPINFTVFLTMFGEK   87 (166)
T ss_pred             hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHC---------CCCcCHHHHHHHHHHH
Confidence            345666778999999999999999999999876554 355 66776666665431         5669999999886533


Q ss_pred             HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (670)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~  347 (670)
                      ....                                         ...+.++..|+.||.|++|.|+..|+..++... +
T Consensus        88 ~~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g  125 (166)
T 2mys_B           88 LKGA-----------------------------------------DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG-G  125 (166)
T ss_pred             hccC-----------------------------------------CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHc-C
Confidence            2100                                         113567889999999999999999999998764 2


Q ss_pred             CCCCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908          348 SPWDE---APYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       348 ~p~~~---~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      .+...   .........+..|.|++..|+..+.
T Consensus       126 ~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~  158 (166)
T 2mys_B          126 GRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT  158 (166)
T ss_pred             CCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHH
Confidence            22211   1111223446677888877776654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.15  E-value=0.0005  Score=76.81  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      .|+|+|++|+|||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999999864

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=97.13  E-value=0.0011  Score=59.68  Aligned_cols=142  Identities=16%  Similarity=0.191  Sum_probs=98.7

Q ss_pred             ccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHH
Q 005908          188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (670)
Q Consensus       188 ~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~  267 (670)
                      ....+.....+.++|...|.+++|.++.+++...-.. .+..+...++..+...+...     .+..++.+.|+.+....
T Consensus        15 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~   88 (161)
T 3fwb_A           15 SELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDSE-----GRHLMKYDDFYIVMGEK   88 (161)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSCEEHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCcC-----CCCeEeHHHHHHHHHHH
Confidence            3466778889999999999999999999998876554 56778888877777665322     24459999998886643


Q ss_pred             HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (670)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~  347 (670)
                      ....                                         ...+.++..|+.+|.|++|.++.+|+..++.....
T Consensus        89 ~~~~-----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~  127 (161)
T 3fwb_A           89 ILKR-----------------------------------------DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGE  127 (161)
T ss_dssp             HHTC-----------------------------------------CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC
T ss_pred             HhcC-----------------------------------------CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCC
Confidence            3211                                         12456788999999999999999999998875421


Q ss_pred             -CC-CCCCCCCCCccccCCCccchhhhHhhh
Q 005908          348 -SP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       348 -~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                       .+ ............+..|.|++..|+..+
T Consensus       128 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~  158 (161)
T 3fwb_A          128 TLTDEELRAMIEEFDLDGDGEINENEFIAIC  158 (161)
T ss_dssp             CCCHHHHHHHHHTTCSSSSSSEEHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence             11 001111122334566778887776654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.05  E-value=0.0015  Score=67.45  Aligned_cols=82  Identities=20%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             hcccccEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH---HhCCCCcEE
Q 005908          494 ALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ---ELGIEPPIP  569 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~  569 (670)
                      ...++|.+++|... ++ .+...+.+++......      ++|.++|+||+||.+... .+..+++..   ..+++ ++.
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G~~-v~~  197 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIGYR-VLM  197 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTTCC-EEE
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCCCc-EEE
Confidence            46899999988554 45 3444445554444333      688899999999987432 112333333   45665 899


Q ss_pred             eecccC-ChHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRI  584 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l  584 (670)
                      +||++| |++++...+
T Consensus       198 ~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          198 VSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CBTTTTBTHHHHHHHH
T ss_pred             EecCCCcCHHHHHHhc
Confidence            999999 999887643

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=97.05  E-value=0.0012  Score=58.70  Aligned_cols=144  Identities=17%  Similarity=0.235  Sum_probs=97.5

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      +.++....+.++|...|.+++|.++.+++...-.. .+..+...++..+...+...     .+..++.+.|+.+......
T Consensus         5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~   78 (153)
T 3ox6_A            5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRT-MGYMPTEMELIELSQQINMN-----LGGHVDFDDFVELMGPKLL   78 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTT-----STTCCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCccCcHHHHHHHHHHHhh
Confidence            45667788999999999999999999998876543 46678888888877766533     2445999999988654331


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                      ....                                     .....+.++.+|+.+|.|++|.++.+|+..++...-+.+
T Consensus        79 ~~~~-------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~  121 (153)
T 3ox6_A           79 AETA-------------------------------------DMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQ  121 (153)
T ss_dssp             TCCH-------------------------------------HHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSC
T ss_pred             cccc-------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence            1110                                     112245688899999999999999999998887522222


Q ss_pred             CCCC---CCCCCccccCCCccchhhhHhhh
Q 005908          350 WDEA---PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ....   ........+..|.|++..|+..+
T Consensus       122 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~  151 (153)
T 3ox6_A          122 VGHRDIEEIIRDVDLNGDGRVDFEEFVRMM  151 (153)
T ss_dssp             CCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred             CCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            2111   11112334567778777776543

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=97.04  E-value=0.0016  Score=58.76  Aligned_cols=147  Identities=17%  Similarity=0.246  Sum_probs=98.9

Q ss_pred             cccccccHHHHHHHHHHHHHhCCCC-CCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHH
Q 005908          185 HDEQTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (670)
Q Consensus       185 ~~~~~~~~~~~~~l~ri~~~~d~~~-~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~  263 (670)
                      .....+.+.....++++|...|.++ +|.++.+++...-.. .+..+...++..+.+.+...     .+..++.+.|+.+
T Consensus         7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~D~~-----~~g~i~~~eF~~~   80 (161)
T 1dtl_A            7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRM-LGQNPTPEELQEMIDEVDED-----GSGTVDFDEFLVM   80 (161)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSSBCHHHHHHH
T ss_pred             HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHH
Confidence            3344566777888999999999999 999999998876554 46677777777776655322     2455999999988


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (670)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~  343 (670)
                      .........                                      .....+.++.+|+.+|.|++|.|+.+|+..++.
T Consensus        81 ~~~~~~~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~  122 (161)
T 1dtl_A           81 MVRSMKDDS--------------------------------------KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQ  122 (161)
T ss_dssp             HHHHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGT
T ss_pred             HHHHhcccc--------------------------------------cchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            765541000                                      112345688999999999999999999999887


Q ss_pred             cCCCCCCCCC---CCCCCccccCCCccchhhhHhhh
Q 005908          344 TAPESPWDEA---PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       344 ~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ... .+....   ........+..|.|++..|+..+
T Consensus       123 ~~g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~  157 (161)
T 1dtl_A          123 ATG-ETITEDDIEELMKDGDKNNDGRIDYDEFLEFM  157 (161)
T ss_dssp             TC---CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHH
T ss_pred             HhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            642 111111   11112233566777777776654

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=96.99  E-value=0.00073  Score=59.69  Aligned_cols=134  Identities=15%  Similarity=0.282  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (670)
                      ++....++++|...|.+++|.++..++...-.. ++..+...++..+...         .+..++.+.|+.++...... 
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~---------~~g~i~~~eF~~~~~~~~~~-   71 (143)
T 3j04_B            3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS-MGKNPTDEYLEGMMSE---------APGPINFTMFLTMFGEKLNG-   71 (143)
T ss_dssp             HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHH-TSCCCCHHHHHTTTTT---------SSSCCCHHHHHHHHHHTTTS-
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHh---------CCCCcCHHHHHHHHHHHhcc-
Confidence            455678899999999999999999998876544 4556666665554432         45679999999885522100 


Q ss_pred             CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC
Q 005908          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD  351 (670)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~  351 (670)
                                                              ....+.++..|+.||.|++|.++.+|+..++.... .+..
T Consensus        72 ----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g-~~~~  110 (143)
T 3j04_B           72 ----------------------------------------TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMG-DRFT  110 (143)
T ss_dssp             ----------------------------------------SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSS-SCCC
T ss_pred             ----------------------------------------CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC-CCCC
Confidence                                                    01124678899999999999999999988887542 1111


Q ss_pred             C---CCCCCCccccCCCccchhhhHhhhh
Q 005908          352 E---APYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       352 ~---~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      .   .........+..|.|++..|+....
T Consensus       111 ~~~~~~~~~~~D~d~dg~i~~~eF~~~~~  139 (143)
T 3j04_B          111 DEEVDEMYREAPIDKKGNFNYVEFTRILK  139 (143)
T ss_dssp             HHHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence            1   1111122345667777777766543

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=96.97  E-value=0.0039  Score=55.13  Aligned_cols=141  Identities=17%  Similarity=0.250  Sum_probs=94.1

Q ss_pred             cHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHc
Q 005908          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (670)
Q Consensus       191 ~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~  270 (670)
                      .+.....++++|...|.+++|.++..++...-.. .+..+...++..+.+.+...-   .+...++.+.|+.++......
T Consensus         3 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~~~~d---~~~g~i~~~eF~~~~~~~~~~   78 (149)
T 2mys_C            3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARA-LGQNPTNAEINKILGNPSKEE---MNAAAITFEEFLPMLQAAANN   78 (149)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhhhcc---ccCCcCcHHHHHHHHHHHhcc
Confidence            3556677899999999999999999998765433 466777777777776651111   222559999998886543200


Q ss_pred             CCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCC
Q 005908          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPW  350 (670)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~  350 (670)
                      .                                       .......++..|+.+|.|++|.++.+|+..++..... +.
T Consensus        79 ~---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~  118 (149)
T 2mys_C           79 K---------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGE-KM  118 (149)
T ss_pred             C---------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCC-CC
Confidence            0                                       1122456888999999999999999999999876421 21


Q ss_pred             CCC---CCCCCccccCCCccchhhhHhhh
Q 005908          351 DEA---PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       351 ~~~---~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ...   ..... ..+..|.+++..|+..+
T Consensus       119 ~~~~~~~~~~~-d~~~dg~i~~~eF~~~~  146 (149)
T 2mys_C          119 TEEEVEELMKG-QEDSNGCINYEAFVKHI  146 (149)
T ss_pred             CHHHHHHHHhh-CCCCCCcEeHHHHHHHH
Confidence            111   11122 44566777777776654

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=96.93  E-value=0.0039  Score=56.47  Aligned_cols=140  Identities=19%  Similarity=0.243  Sum_probs=92.9

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      ..++....++++|...|.+++|.++..|+...-.. .+..+...++..+.+.+...     .+..++.+.|+.+..... 
T Consensus        21 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~-   93 (166)
T 2aao_A           21 LSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAADVD-----NSGTIDYKEFIAATLHLN-   93 (166)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHCTT-----CCSSBCHHHHHHHHTTCH-
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHHHh-
Confidence            34556677899999999999999999999776555 46777777777666655322     244588899887742110 


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                                                               .....+.++.+|+.+|.|++|.++.+|+..++......+
T Consensus        94 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~  132 (166)
T 2aao_A           94 -----------------------------------------KIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVED  132 (166)
T ss_dssp             -----------------------------------------HHHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC-----
T ss_pred             -----------------------------------------hcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCH
Confidence                                                     001123578899999999999999999999988653212


Q ss_pred             CCCCCCCCCccccCCCccchhhhHhhhh
Q 005908          350 WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      ............+..|.|++..|+....
T Consensus       133 ~~~~~~~~~~d~~~dg~i~~~eF~~~~~  160 (166)
T 2aao_A          133 VRIEELMRDVDQDNDGRIDYNEFVAMMQ  160 (166)
T ss_dssp             ---CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence            2111122233446677888887777654

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=96.86  E-value=0.0016  Score=59.32  Aligned_cols=141  Identities=16%  Similarity=0.202  Sum_probs=96.8

Q ss_pred             cccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHH
Q 005908          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (670)
Q Consensus       189 ~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (670)
                      .+.++....++++|...|.+++|.++..|+...-. .++..+...++..+...+...     .+..++.+.|+.+.....
T Consensus        21 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~~~~   94 (169)
T 3qrx_A           21 GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMR-ALGFEPKKEEIKKMISEIDKD-----GSGTIDFEEFLTMMTAKM   94 (169)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHH-HTSCCCCHHHHHHHHHHHCSS-----SSSSEEHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCC-----CCCcCCHHHHHHHHHHHh
Confidence            45667788899999999999999999999976653 456777887777776665322     244599999998866433


Q ss_pred             HcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCC
Q 005908          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (670)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~  348 (670)
                      .                                         .....+.++.+|+.+|.|++|.++.+|+..++.... .
T Consensus        95 ~-----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g-~  132 (169)
T 3qrx_A           95 G-----------------------------------------ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG-E  132 (169)
T ss_dssp             H-----------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTT-C
T ss_pred             c-----------------------------------------ccCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcC-C
Confidence            1                                         112345677889999999999999999988887542 1


Q ss_pred             CCCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908          349 PWDE---APYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       349 p~~~---~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      +...   .........+..|.|++..|+..+.
T Consensus       133 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  164 (169)
T 3qrx_A          133 NLTEEELQEMIAEADRNDDNEIDEDEFIRIMK  164 (169)
T ss_dssp             CCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence            1111   1111123346677777777776654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.85  E-value=0.0048  Score=71.00  Aligned_cols=25  Identities=28%  Similarity=0.518  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ..-.|+++|+||||||++++.+...
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999988654

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=96.85  E-value=0.0019  Score=59.03  Aligned_cols=145  Identities=19%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhc---CCCCCHHH-HHHHH-----HHHhhhcCCCcccCCcChhhHHH
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAE-IVGVK-----RVVQEKQHDGVNDLGLTLSGFLF  262 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~---~~~l~~~~-~~~l~-----~~l~~~~~~~~~~~~~~~~~f~~  262 (670)
                      ++..+.++++|...|.+++|.++.+|+...-....   +..+...+ +..+.     .++... .   .+..++.+.|+.
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-D---~~g~i~~~EF~~   77 (174)
T 1q80_A            2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV-A---GGKGIDETTFIN   77 (174)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGT-T---TTSCEEHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhc-C---CCCeEcHHHHHH
Confidence            34567789999999999999999999887655433   35666655 54432     222222 1   455699999998


Q ss_pred             HHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhh
Q 005908          263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF  342 (670)
Q Consensus       263 ~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f  342 (670)
                      ++.......                                     .......+.++.+|+.+|.|++|.|+.+|+..++
T Consensus        78 ~~~~~~~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l  120 (174)
T 1q80_A           78 SMKEMVKNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF  120 (174)
T ss_dssp             HHHHHTTST-------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred             HHHHHcCcc-------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence            766443200                                     0112234678899999999999999999998888


Q ss_pred             ccCCCCCCCCCCCCCCccccCCCccchhhhHhhhh
Q 005908          343 LTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       343 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      ......+............+..|.|++..|+..+.
T Consensus       121 ~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~  155 (174)
T 1q80_A          121 GMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             HHHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence            76521111111111223346677787777766553

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.82  E-value=0.0002  Score=77.66  Aligned_cols=113  Identities=11%  Similarity=-0.001  Sum_probs=65.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCcc--chhhh--------HH
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLE--NKGKL--------NE   78 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~--------~~   78 (670)
                      ...++|+++|.+|+||||+.++|...-.....++..-. ..+............+||..|.+.  ....+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999754321111110000 001111112223456789888632  22222        45


Q ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Q 005908           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD  126 (670)
Q Consensus        79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D  126 (670)
                      ++..+++.++|+|.++. +.+... .|...+++.  ..+++++-..++
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~~~~~  160 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVESICV  160 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEEECCC
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEEEECC
Confidence            66668899999999887 344443 477777766  455555544443

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=96.77  E-value=0.0023  Score=56.67  Aligned_cols=136  Identities=15%  Similarity=0.192  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCC
Q 005908          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (670)
Q Consensus       193 ~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  272 (670)
                      +....++++|...|.+++|.++..|+...-.. .+..+...++..+...+...     .+..++++.|+.++.....   
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~~~~~---   73 (143)
T 2obh_A            3 EQKQEIREAFDLFDADGTGTIDVKELKVAMRA-LGFEPKKEEIKKMISEIDKE-----GTGKMNFGDFLTVMTQKMS---   73 (143)
T ss_dssp             HHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHTTT-----CCSEEEHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCCeeeHHHHHHHHHHHhc---
Confidence            44667899999999999999999998766543 46677777777766544322     2445999999988543221   


Q ss_pred             ccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC-CCC-C
Q 005908          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP-W  350 (670)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-~~p-~  350 (670)
                                                            .....+-++..|+.||.|++|.++..|+..++...- ..+ .
T Consensus        74 --------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~  115 (143)
T 2obh_A           74 --------------------------------------EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE  115 (143)
T ss_dssp             --------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHH
T ss_pred             --------------------------------------cccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH
Confidence                                                  011234578899999999999999999998886531 111 0


Q ss_pred             CCCCCCCCccccCCCccchhhhHhh
Q 005908          351 DEAPYKDAAETTALGNLTLKGFVSK  375 (670)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~l~~  375 (670)
                      ...........+..|.|++..|+..
T Consensus       116 ~~~~~~~~~D~d~dG~I~~~eF~~~  140 (143)
T 2obh_A          116 ELQEMIDEADRDGDGEVSEQEFLRI  140 (143)
T ss_dssp             HHHHHHHHHCTTSSSSBCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            0000111223456677777776654

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.77  E-value=0.0015  Score=57.50  Aligned_cols=135  Identities=18%  Similarity=0.310  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCC
Q 005908          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (670)
Q Consensus       193 ~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  272 (670)
                      +....++++|...|.+++|.++.+++...-.. ++..+...++..+.+.+...     .+..++.+.|+.+........ 
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~~~-   75 (142)
T 2bl0_C            3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQ-FGVRVEPAAFNEMFNEADAT-----GNGKIQFPEFLSMMGRRMKQT-   75 (142)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTT-----CSSEEEHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCcC-----CCCeeeHHHHHHHHHHHhcCC-
Confidence            44667899999999999999999998876544 46777877777766655322     234599999998866432100 


Q ss_pred             ccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC
Q 005908          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE  352 (670)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~  352 (670)
                                                              ...+.++.+|+.+|.|++|.++.+|+..++.... .+...
T Consensus        76 ----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~  114 (142)
T 2bl0_C           76 ----------------------------------------TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLG-DRLKP  114 (142)
T ss_dssp             ----------------------------------------CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSS-SCCCH
T ss_pred             ----------------------------------------ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC-CCCCH
Confidence                                                    1134688899999999999999999998887541 11111


Q ss_pred             C---CCCCCccccCCCccchhhhHhhh
Q 005908          353 A---PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       353 ~---~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      .   ....... +..|.+++..|+..+
T Consensus       115 ~~~~~~~~~~d-~~dg~i~~~eF~~~~  140 (142)
T 2bl0_C          115 HEFAEFLGITE-TEKGQIRYDNFINTM  140 (142)
T ss_dssp             HHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred             HHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence            1   1111223 566777777766543

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=96.68  E-value=0.0053  Score=57.10  Aligned_cols=152  Identities=14%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             cHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHHHhhhc-----CCCc-ccCCcChhhH
Q 005908          191 KPRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQ-----HDGV-NDLGLTLSGF  260 (670)
Q Consensus       191 ~~~~~~~l~ri~~~~-d~~~~~~l~~~el~~~q~~~~---~~~l~~~~~~~l~~~l~~~~-----~~~~-~~~~~~~~~f  260 (670)
                      .+...+.++++|... |.+++|.++.+|+...-....   +.......+..+...+....     .... .+..++.+.|
T Consensus         7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef   86 (191)
T 2ccm_A            7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW   86 (191)
T ss_dssp             CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence            456677889999999 999999999999987766553   66677777777663222210     0111 2445999999


Q ss_pred             HHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhh
Q 005908          261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED  340 (670)
Q Consensus       261 ~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~  340 (670)
                      +.++........           +            |          ..+.......++.+|+.+|.|++|.++.+|+..
T Consensus        87 ~~~~~~~~~~~~-----------~------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~  133 (191)
T 2ccm_A           87 LKMWAECVKSVE-----------K------------G----------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST  133 (191)
T ss_dssp             HHHHHHHHHHHH-----------T------------T----------CCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred             HHHHHHHhcccc-----------c------------h----------hhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            887654321000           0            0          001223456788999999999999999999988


Q ss_pred             hhccCCCCC-CCCCCCCCCccccCCCccchhhhHhhh
Q 005908          341 LFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       341 ~f~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ++.... .+ -...........+..|.|++..|+...
T Consensus       134 ~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~  169 (191)
T 2ccm_A          134 VYMSYG-IPKSDCDAAFDTLSDGGKTMVTREIFARLW  169 (191)
T ss_dssp             HHHTTT-CCHHHHHHHHHHHTTTTTSCCBHHHHHHHH
T ss_pred             HHHHhC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence            886532 11 000001112233556677776665544

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=96.68  E-value=0.001  Score=62.65  Aligned_cols=135  Identities=15%  Similarity=0.195  Sum_probs=92.6

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      +.+.....+.++|...|.+++|.++..++...-.. ++..+...++..+...+         +..++++.|+.++.....
T Consensus        51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~l~~~~---------~g~i~~~eF~~~~~~~~~  120 (196)
T 3dtp_E           51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDS-LGRLCTEQELDSMVAEA---------PGPINFTMFLTIFGDRIA  120 (196)
T ss_dssp             SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHT-TSCCCCHHHHHHHHTTS---------SSCCBHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHc---------cCCCcHHHHHHHHHHHhc
Confidence            44556678999999999999999999998776543 46677777766665543         556999999988542110


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                                                               .......++..|+.||.|++|.|+..|+..++ .. +.+
T Consensus       121 -----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~-g~~  157 (196)
T 3dtp_E          121 -----------------------------------------GTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TW-GEK  157 (196)
T ss_dssp             -----------------------------------------SSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HS-SSC
T ss_pred             -----------------------------------------CCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-Hc-CCC
Confidence                                                     00113467889999999999999999999999 43 222


Q ss_pred             CCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908          350 WDE---APYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       350 ~~~---~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      ...   ..+......+..|.|++..|+....
T Consensus       158 ~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  188 (196)
T 3dtp_E          158 FSQDEVDQALSEAPIDGNGLIDIKKFAQILT  188 (196)
T ss_dssp             CCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence            221   1111233446677787777766544

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.67  E-value=0.0027  Score=64.86  Aligned_cols=142  Identities=13%  Similarity=0.090  Sum_probs=76.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--------CCCCCCCC-------------CCCeEeCCccc-------------
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--------VPEKVPPV-------------HAPTRLPPDFY-------------   55 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--------~~~~~~~~-------------~~~~~~~~~~~-------------   55 (670)
                      .+.--|+|+|++||||||+++.|.+..        +.......             .+...+.....             
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            456789999999999999999987421        00000000             00000000000             


Q ss_pred             --CCceeEEEEeCCCCccchhh-hH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Q 005908           56 --PDRVPVTIIDTSSSLENKGK-LN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL  127 (670)
Q Consensus        56 --~~~~~~~i~Dt~G~~~~~~~-~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl  127 (670)
                        ..+..+.++||+|....... ..     ...-..|-.+++.|.....   ++.+ ....+.+.  -...+++.||.|.
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~~--~~it~iilTKlD~  280 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNEA--VKIDGIILTKLDA  280 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHHH--SCCCEEEEECGGG
T ss_pred             HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHHh--cCCCEEEEeCcCC
Confidence              12356778999997543221 11     1122478999999976553   2221 33333322  2234788999996


Q ss_pred             CCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908          128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ....      -.+..+....+  .|+..++  +|++++++
T Consensus       281 ~a~~------G~~l~~~~~~~--~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          281 DARG------GAALSISYVID--APILFVG--VGQGYDDL  310 (328)
T ss_dssp             CSCC------HHHHHHHHHHT--CCEEEEE--CSSSTTCE
T ss_pred             ccch------hHHHHHHHHHC--CCEEEEe--CCCCcccc
Confidence            4321      22334455555  2566666  77777553

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=96.66  E-value=0.003  Score=60.93  Aligned_cols=146  Identities=13%  Similarity=0.047  Sum_probs=93.0

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcC---CCcc-cCCcChhhHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH---DGVN-DLGLTLSGFLFLHA  265 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~---~~~~-~~~~~~~~f~~~~~  265 (670)
                      ..++....++++|...|.+++|.++.+|+...-...++......++..+...+-..+.   ...+ +..++++.|+.+..
T Consensus        45 ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~  124 (226)
T 2lvv_A           45 KDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRL  124 (226)
T ss_dssp             CCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHH
Confidence            3456677889999999999999999999988555556666666666666555411110   0011 33488899988522


Q ss_pred             HHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                      ....                                          ......++.+|+.||.|++|.|+.+|+..++...
T Consensus       125 ~~~~------------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~  162 (226)
T 2lvv_A          125 MLCY------------------------------------------IYDIFELTVMFDTMDKDGSLLLELQEFKEALPKL  162 (226)
T ss_dssp             HHHH------------------------------------------HHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHH
T ss_pred             HHHh------------------------------------------ccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHH
Confidence            1110                                          0112467889999999999999999999988643


Q ss_pred             --CCCCCC-CCCCCCCccccCCCccchhhhHhhhh
Q 005908          346 --PESPWD-EAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       346 --~~~p~~-~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                        .+.+-. ..........+..|.|++..|+....
T Consensus       163 ~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~  197 (226)
T 2lvv_A          163 KEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAV  197 (226)
T ss_dssp             HHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence              122211 11112223446677788777666543

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=96.65  E-value=0.0027  Score=58.12  Aligned_cols=118  Identities=22%  Similarity=0.282  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHH---hhhhcCCCCCHHHHHHHH--------HHHhhhcCCCcccCCcChhhH
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEF---QVKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGF  260 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~---q~~~~~~~l~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~f  260 (670)
                      ++..+.++++|...|.+++|.++.+|+...   -...++..+...++..+.        .++...-.+  .+..++.+.|
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d--~dg~i~~~Ef   80 (176)
T 1nya_A            3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVG--SDGSLTEEQF   80 (176)
T ss_dssp             SHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSC--TTCCBCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC--CCCeEcHHHH
Confidence            355678899999999999999999999875   234577888888888665        333333222  2445999999


Q ss_pred             HHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhh
Q 005908          261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED  340 (670)
Q Consensus       261 ~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~  340 (670)
                      +.+..........+                                  .+.......++.+|+.+|.|++|.++.+|+..
T Consensus        81 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~  126 (176)
T 1nya_A           81 IRVTENLIFEQGEA----------------------------------SFNRVLGPVVKGIVGMCDKNADGQINADEFAA  126 (176)
T ss_dssp             HHHHHHHHSSSCHH----------------------------------HHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHH
T ss_pred             HHHHHHHhcCCchh----------------------------------hHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence            98866543211100                                  01111245677888888888888888888877


Q ss_pred             hhccC
Q 005908          341 LFLTA  345 (670)
Q Consensus       341 ~f~~~  345 (670)
                      ++...
T Consensus       127 ~l~~~  131 (176)
T 1nya_A          127 WLTAL  131 (176)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            77653

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=96.65  E-value=0.0037  Score=55.15  Aligned_cols=137  Identities=20%  Similarity=0.345  Sum_probs=95.3

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      +.+.....++++|...|.+++|.++.+++...-.. .+..+...++..+...+...     .+..++.+.|+.+......
T Consensus         5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~ef~~~~~~~~~   78 (147)
T 4ds7_A            5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDVD-----GNHAIEFSEFLALMSRQLK   78 (147)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSEEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhccC-----CCCcCcHHHHHHHHHHhcc
Confidence            45677788999999999999999999998876554 56677888877777665322     2445999999988653321


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                                                               .....+.++..|+.+|.|++|.++.+|+..++..... +
T Consensus        79 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~-~  116 (147)
T 4ds7_A           79 -----------------------------------------CNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE-K  116 (147)
T ss_dssp             -----------------------------------------THHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC-C
T ss_pred             -----------------------------------------CCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCC-C
Confidence                                                     1123456788999999999999999999999885421 1


Q ss_pred             CCCC---CCCCCccccCCCccchhhhHhh
Q 005908          350 WDEA---PYKDAAETTALGNLTLKGFVSK  375 (670)
Q Consensus       350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~  375 (670)
                      ....   ....... +..|.+++..|+..
T Consensus       117 ~~~~~~~~~~~~~d-~~dg~i~~~eF~~~  144 (147)
T 4ds7_A          117 LTDAEVDEMLREVS-DGSGEINIKQFAAL  144 (147)
T ss_dssp             CCHHHHHHHHHHHS-SSCSSEEHHHHHHH
T ss_pred             CCHHHHHHHHHHhc-CCCCcCcHHHHHHH
Confidence            1111   1111223 56677777766654

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=96.62  E-value=0.003  Score=56.64  Aligned_cols=135  Identities=16%  Similarity=0.251  Sum_probs=90.7

Q ss_pred             cccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHH
Q 005908          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (670)
Q Consensus       189 ~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (670)
                      .+.++....++++|...|.+++|.++.+++...-... +..+...++..+..   .      .+..++++.|+.++....
T Consensus        11 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~   80 (156)
T 1wdc_B           11 KLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKL   80 (156)
T ss_dssp             -CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHH-SSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHH---h------CCCcCcHHHHHHHHHHHh
Confidence            3456677889999999999999999999998766543 66677766666553   1      255699999998865332


Q ss_pred             HcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCC
Q 005908          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (670)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~  348 (670)
                      ...                                         ...+.++..|+.||.|++|.++.+|+..++... +.
T Consensus        81 ~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~  118 (156)
T 1wdc_B           81 SGT-----------------------------------------DSEETIRNAFAMFDEQETKKLNIEYIKDLLENM-GD  118 (156)
T ss_dssp             CSC-----------------------------------------CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS-SS
T ss_pred             cCC-----------------------------------------ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHh-CC
Confidence            100                                         012457889999999999999999999888764 21


Q ss_pred             CCCCC---CCCCCccccCCCccchhhhHhhh
Q 005908          349 PWDEA---PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       349 p~~~~---~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      +....   ........+ .|.|++..|+...
T Consensus       119 ~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~  148 (156)
T 1wdc_B          119 NFNKDEMRMTFKEAPVE-GGKFDYVKFTAMI  148 (156)
T ss_dssp             CCCHHHHHHHHHHCCEE-TTEECHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCC-CCEEeHHHHHHHH
Confidence            21111   011112334 6677776666554

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=96.60  E-value=0.012  Score=54.00  Aligned_cols=150  Identities=13%  Similarity=0.158  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHh-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHH--------HhhhcCCCcccCCcChhh
Q 005908          192 PRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRV--------VQEKQHDGVNDLGLTLSG  259 (670)
Q Consensus       192 ~~~~~~l~ri~~~~-d~~~~~~l~~~el~~~q~~~~---~~~l~~~~~~~l~~~--------l~~~~~~~~~~~~~~~~~  259 (670)
                      +...+.++++|... |.+++|.++.+|+...-....   +..+...+++.+...        +...-.+  .+..++.+.
T Consensus         4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d--~dG~I~~~E   81 (185)
T 2sas_A            4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADIN--KDDVVSWEE   81 (185)
T ss_dssp             HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTT--CSSCEEHHH
T ss_pred             HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeEcHHH
Confidence            45677889999999 999999999999876655432   246677777766433        3332221  244599999


Q ss_pred             HHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHh
Q 005908          260 FLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELE  339 (670)
Q Consensus       260 f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~  339 (670)
                      |+.++.........                       +          ........+.++.+|+.+|.|++|.|+.+|+.
T Consensus        82 f~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~  128 (185)
T 2sas_A           82 YLAMWEKTIATCKS-----------------------V----------ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ  128 (185)
T ss_dssp             HHHHHHHHHHTCCS-----------------------G----------GGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHH
T ss_pred             HHHHHHHHhccccc-----------------------h----------hhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHH
Confidence            99887655432100                       0          00012234678999999999999999999999


Q ss_pred             hhhccCCCCC-CCCCCCCCCccccCCCccchhhhHhhhh
Q 005908          340 DLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       340 ~~f~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      .++.... .| ............+..|.|++..|+....
T Consensus       129 ~~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~  166 (185)
T 2sas_A          129 NYCKNFQ-LQCADVPAVYNVITDGGKVTFDLNRYKELYY  166 (185)
T ss_dssp             HHTTSSC-CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred             HHHHHhC-CCHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            9987542 22 1111111223446677777776665543

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=96.59  E-value=0.0028  Score=57.25  Aligned_cols=144  Identities=19%  Similarity=0.199  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhh---hhcCCCCCHHHHHHHH--------HHHhhhcCCCcccCCcChhhHHHH
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQV---KCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFLFL  263 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~---~~~~~~l~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~f~~~  263 (670)
                      .+.++++|...|.+++|.++.+|+...-.   ...+..++..++..+.        ..+...-.+  .+..++.+.|+.+
T Consensus         3 ~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d--~~g~i~~~ef~~~   80 (166)
T 3akb_A            3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRD--GDQRITREEFVTG   80 (166)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SSSCEEHHHHHHT
T ss_pred             HHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCcCcHHHHHHH
Confidence            35678999999999999999999987643   3457788888887775        333333222  2345999999887


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (670)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~  343 (670)
                      ..........                                   .+.....+.++.+|+.+|.|++|.++.+|+..++.
T Consensus        81 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~  125 (166)
T 3akb_A           81 AVKRLRDKPD-----------------------------------RFAEMARPFLHAALGVADTDGDGAVTVADTARALT  125 (166)
T ss_dssp             HHHHHHHSHH-----------------------------------HHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHH
T ss_pred             HHHHhccCcc-----------------------------------chHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            6544321100                                   01112244578899999999999999999888876


Q ss_pred             cCCCCC-CCCCCCCCCccccCCCccchhhhHhhh
Q 005908          344 TAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       344 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ... .+ ............+..|.|++..|+...
T Consensus       126 ~~~-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~  158 (166)
T 3akb_A          126 AFG-VPEDLARQAAAALDTDGDGKVGETEIVPAF  158 (166)
T ss_dssp             HTT-CCHHHHHHHHHHHCTTCSSBCCHHHHHHHH
T ss_pred             HhC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            542 11 000011112233566677776666544

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=96.58  E-value=0.0039  Score=55.37  Aligned_cols=139  Identities=21%  Similarity=0.306  Sum_probs=90.6

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      +.++....++++|...|.+++|.++..|+...-.. .+..+...++..+...+...     .+..++++.|+.++.....
T Consensus         4 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~   77 (148)
T 1exr_A            4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GNGTIDFPEFLSLMARKMK   77 (148)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTT-----CSSSEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHHCCC-----CCCcCcHHHHHHHHHhccc
Confidence            34556677899999999999999999998776544 45666777766665544221     2345899999887643221


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                                                               .....+-++..|+.||.|++|.++..|+..++...- .+
T Consensus        78 -----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~  115 (148)
T 1exr_A           78 -----------------------------------------EQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLG-EK  115 (148)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTT-CC
T ss_pred             -----------------------------------------CCCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhC-CC
Confidence                                                     012234577899999999999999999988887542 11


Q ss_pred             CCCC---CCCCCccccCCCccchhhhHhhh
Q 005908          350 WDEA---PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ....   ..-.....+..|.|++..|+...
T Consensus       116 ~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~  145 (148)
T 1exr_A          116 LTDDEVDEMIREADIDGDGHINYEEFVRMM  145 (148)
T ss_dssp             CCHHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            1110   01111233566777777666543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.57  E-value=0.0042  Score=63.46  Aligned_cols=142  Identities=11%  Similarity=0.139  Sum_probs=75.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------CCCcc-----------cceEEEEEEcC-C--------------
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY------APTTG-----------EQYAVNVVDQP-G--------------  469 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------~~t~~-----------~~~~~~~vd~~-g--------------  469 (670)
                      .+-.++++|++||||||+++.+.+.......      ..+.+           ....+..+.-. +              
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            4568999999999999999998853211100      01100           00000011000 0              


Q ss_pred             --CceEEEEEecCChhhH-----hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 005908          470 --GNKKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK  542 (670)
Q Consensus       470 --~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK  542 (670)
                        ......++|++|....     ..+. .....-..|-.+++.|++.+   +++......+.+..      ...++++||
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~-~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~------~it~iilTK  277 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMK-KIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV------KIDGIILTK  277 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHH-HHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS------CCCEEEEEC
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHH-HHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc------CCCEEEEeC
Confidence              0123445788874221     1111 11112347889999998765   33444445544331      234677899


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       543 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      .|-...   .-.+..+....+.+ +.+++  +| ++++
T Consensus       278 lD~~a~---~G~~l~~~~~~~~p-i~~i~--~Ge~v~d  309 (328)
T 3e70_C          278 LDADAR---GGAALSISYVIDAP-ILFVG--VGQGYDD  309 (328)
T ss_dssp             GGGCSC---CHHHHHHHHHHTCC-EEEEE--CSSSTTC
T ss_pred             cCCccc---hhHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            996432   23345666777866 88877  55 5543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.50  E-value=0.0098  Score=63.19  Aligned_cols=112  Identities=14%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHH-------cCCC---CCC--CCCCC----------CCeEeCC---------------c
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAA-------TESV---PEK--VPPVH----------APTRLPP---------------D   53 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~-------~~~~---~~~--~~~~~----------~~~~~~~---------------~   53 (670)
                      +...|+++|.+||||||++..|.       +.+.   ..+  .+...          +...+..               .
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            45678899999999999999987       3331   111  11000          0000000               0


Q ss_pred             ccCCceeEEEEeCCCCccchh-hhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCC
Q 005908           54 FYPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLD  126 (670)
Q Consensus        54 ~~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D  126 (670)
                      ....++.+.|+||||...... ...     ..+..++.+++|+|.........    ....+..   ..+ .-+|.||.|
T Consensus       179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D  251 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVD  251 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTT
T ss_pred             HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCC
Confidence            112467899999999654322 221     22457899999999875533221    2222322   244 347999999


Q ss_pred             CCC
Q 005908          127 LRG  129 (670)
Q Consensus       127 l~~  129 (670)
                      ...
T Consensus       252 ~~~  254 (433)
T 2xxa_A          252 GDA  254 (433)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            753

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=96.49  E-value=0.0061  Score=63.40  Aligned_cols=114  Identities=22%  Similarity=0.355  Sum_probs=84.3

Q ss_pred             ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHH
Q 005908          184 DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (670)
Q Consensus       184 ~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~  263 (670)
                      .+....+.++....++++|...|.++++.++.+|+...-+ .++..++..+++.+.+.+...     .+..++++.|+.+
T Consensus       290 ePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLr-sLG~~~TeeEI~~Lf~~~D~D-----gDG~IdFeEFl~l  363 (440)
T 3u0k_A          290 EPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR-SLGQNPTEAELQDMINEVDAD-----GDGTIDFPEFLIM  363 (440)
T ss_dssp             CCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH-HTTCCCCHHHHHHHHHHHCSS-----CSSSEEHHHHHHH
T ss_pred             HhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCC-----CCCcCcHHHHHHH
Confidence            3445567788999999999999999999999999987654 357788888888877665432     2445899999877


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (670)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~  343 (670)
                      +.....   .                                      ....+-++..|+.||.|++|.|+.+|+..++.
T Consensus       364 ms~~lk---~--------------------------------------~d~eeeLreAFk~fDkDgdG~IS~eELr~vL~  402 (440)
T 3u0k_A          364 MARKMK---D--------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMT  402 (440)
T ss_dssp             HHTC-----------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred             HHHHhc---C--------------------------------------CChHHHHHHHHHHHCCCCcCcCCHHHHHHHHH
Confidence            431110   0                                      00123578899999999999999999988876


Q ss_pred             c
Q 005908          344 T  344 (670)
Q Consensus       344 ~  344 (670)
                      .
T Consensus       403 ~  403 (440)
T 3u0k_A          403 N  403 (440)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=96.42  E-value=0.015  Score=52.23  Aligned_cols=108  Identities=23%  Similarity=0.364  Sum_probs=78.3

Q ss_pred             cccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHH
Q 005908          187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (670)
Q Consensus       187 ~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~  266 (670)
                      ...++++....++.+|...|.+++|.++..|+...-+ .++..+...++..+..   ..      +..++++.|+.++..
T Consensus         7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~-~lg~~~~~~~~~~~~~---~~------~~~i~f~ef~~~~~~   76 (153)
T 3i5g_B            7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFS-SLGRVPPDDELNAMLK---EC------PGQLNFTAFLTLFGE   76 (153)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHH-HTTSCCCHHHHHHHHH---TS------SSCCCSHHHHHTTTT
T ss_pred             ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHH-HcCCCccHHHHHHHHH---hc------cCCccHHHHHHHHHh
Confidence            3457788888999999999999999999999876654 4566777766665543   11      334777777766321


Q ss_pred             HHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                      ..                            .     .        ....+-|+..|+.||.|++|.++..|+..++...
T Consensus        77 ~~----------------------------~-----~--------~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~  114 (153)
T 3i5g_B           77 KV----------------------------S-----G--------TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENM  114 (153)
T ss_dssp             TT----------------------------T-----T--------CCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSS
T ss_pred             hh----------------------------c-----c--------cccHHHHHHHHhccccCCCCeEeHHHHHHHHHHc
Confidence            00                            0     0        0013468999999999999999999999998763

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.39  E-value=0.02  Score=65.84  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ..-.++|+|+||||||++++.+...
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence            4557899999999999999998753

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=96.38  E-value=0.0067  Score=54.47  Aligned_cols=142  Identities=17%  Similarity=0.267  Sum_probs=95.7

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      +.++....++++|...|.+++|.++..++...-.. .+..+...++..+.+.+...     .+..++.+.|+.+......
T Consensus        14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~   87 (162)
T 1top_A           14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRM-LGQNPTKEELDAIIEEVDED-----GSGTIDFEEFLVMMVRQMK   87 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SCCEEEHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHcCC-----CCCcEeHHHHHHHHHHHhc
Confidence            55677788999999999999999999998776543 46677777777766655322     2445999999988664431


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                      ...                                      .......++.+|+.+|.|++|.++.+|+..++.... .+
T Consensus        88 ~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g-~~  128 (162)
T 1top_A           88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATG-EH  128 (162)
T ss_dssp             HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTT-CC
T ss_pred             ccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CC
Confidence            100                                      011345688999999999999999999999887642 11


Q ss_pred             CCCC---CCCCCccccCCCccchhhhHhhh
Q 005908          350 WDEA---PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ....   ........+..|.+++..|+...
T Consensus       129 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~  158 (162)
T 1top_A          129 VTEEDIEDLMKDSDKNNDGRIDFDEFLKMM  158 (162)
T ss_dssp             CCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            1110   11112233556677777666543

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=96.38  E-value=0.0062  Score=56.90  Aligned_cols=129  Identities=20%  Similarity=0.240  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCcc
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  274 (670)
                      .+.++++|...|.+++|.++.+|+...- ...+..+...++..+.+.+...     .+..++.+.|+.++..        
T Consensus        26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l-~~~~~~~~~~~~~~l~~~~D~d-----~dG~I~~~EF~~~~~~--------   91 (191)
T 1y1x_A           26 NQELMEWFRAVDTDGSGAISVPELNAAL-SSAGVPFSLATTEKLLHMYDKN-----HSGEITFDEFKDLHHF--------   91 (191)
T ss_dssp             TSCHHHHHHHHCTTCSSSBCHHHHHHHH-CBTTBCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHcCCCCCcCcHHHHHHHH-HHcCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHH--------
Confidence            3467889999999999999999988776 3455667777777776655322     2445999999887542        


Q ss_pred             chhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC--
Q 005908          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE--  352 (670)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~--  352 (670)
                                                              .+.++..|+.+|.|++|.++.+|+..++...-. +...  
T Consensus        92 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~-~~~~~~  130 (191)
T 1y1x_A           92 ----------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGY-QVSEQT  130 (191)
T ss_dssp             ----------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSC-CCCHHH
T ss_pred             ----------------------------------------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCC-CCCHHH
Confidence                                                    134678999999999999999999998876421 1111  


Q ss_pred             -CCCCCCccccCCCccchhhhHhhhhh
Q 005908          353 -APYKDAAETTALGNLTLKGFVSKWAL  378 (670)
Q Consensus       353 -~~~~~~~~~~~~~~~~~~~~l~~w~~  378 (670)
                       .........+..|.+++..|+..+..
T Consensus       131 ~~~~~~~~D~d~dg~i~~~eF~~~~~~  157 (191)
T 1y1x_A          131 FQALMRKFDRQRRGSLGFDDYVELSIF  157 (191)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence             11112233466778888888777653

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=96.34  E-value=0.0022  Score=57.30  Aligned_cols=138  Identities=20%  Similarity=0.291  Sum_probs=87.8

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      ++++....++.+|...|.+++|.++..|+...-. ..+..+...++..+...+...     .+..++...|+........
T Consensus         4 lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~   77 (148)
T 2lmt_A            4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMR-TLGQNPTEAELQDLIAEAENN-----NNGQLNFTEFCGIMAKQMR   77 (148)
T ss_dssp             CCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHH-HHTCCCCHHHHHHHHHHHHTT-----STTEEEHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHH-hcCCCchHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHHhc
Confidence            4456677899999999999999999999876544 345667777777666554433     2334677777665432110


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC-CCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PES  348 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~-~~~  348 (670)
                      .                                         ....+-++..|+.||.|++|.++.+|+..++... ...
T Consensus        78 ~-----------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~  116 (148)
T 2lmt_A           78 E-----------------------------------------TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKV  116 (148)
T ss_dssp             T-----------------------------------------TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCC
T ss_pred             c-----------------------------------------cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccc
Confidence            0                                         0112347889999999999999999998887643 111


Q ss_pred             C-CCCCCCCCCccccCCCccchhhhHh
Q 005908          349 P-WDEAPYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       349 p-~~~~~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      + ......-.....+..|.|++..|+.
T Consensus       117 ~~~e~~~l~~~~D~d~dG~I~~~EF~~  143 (148)
T 2lmt_A          117 TDEEIDEMIREADFDGDGMINYEEFVW  143 (148)
T ss_dssp             CHHHHHHHHHHHCCSCCSSEEHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            1 0001111123346667777776664

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=96.31  E-value=0.007  Score=57.26  Aligned_cols=156  Identities=21%  Similarity=0.244  Sum_probs=91.1

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCC--CCCHHHHHHHHHHHhhhc--CCCc-ccCCcChhhHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA--PLQPAEIVGVKRVVQEKQ--HDGV-NDLGLTLSGFLFLH  264 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~--~l~~~~~~~l~~~l~~~~--~~~~-~~~~~~~~~f~~~~  264 (670)
                      +.++....++++|...|.+++|.++.+|+...-... +.  .+...++..+...+ +.+  .-.. .+..++++.|+.++
T Consensus        30 l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~-~~~~~~~~~~~~~l~~~~-~~lf~~~D~d~dg~i~~~EF~~~~  107 (208)
T 2hpk_A           30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRM-RQLVNATDEQVEKMRDAV-RVFFLHKGVEPVNGLLREDWVEAN  107 (208)
T ss_dssp             ------CHHHHHHHHHCTTCSSEECHHHHTHHHHHH-HHHSCCCHHHHHHHHHHH-HHHHHHTTCBTTTBEEGGGHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-HhhcCCCHHHHHHHHHHH-HHHHHHhCCCCCCeEcHHHHHHHH
Confidence            334455678899999999999999999987765543 22  56777777776333 111  0112 24459999999886


Q ss_pred             HHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                      ...-..       .-.+.....          |              ..-.+.++.+|+.+|.|++|.++.+|+..++..
T Consensus       108 ~~~~~~-------~~~~~~~~~----------~--------------~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~  156 (208)
T 2hpk_A          108 RVFAEA-------ERERERRGE----------P--------------SLIALLSNSYYDVLDDDGDGTVDVDELKTMMKA  156 (208)
T ss_dssp             HHHHHH-------HHHHHHTTC----------C--------------CHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHhhh-------hhhhhccCC----------h--------------HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            520000       000000000          0              112344788999999999999999999998865


Q ss_pred             CCCCCCCCCCCCCCccccCCCccchhhhHhhhhh
Q 005908          345 APESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (670)
Q Consensus       345 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~  378 (670)
                      ....+............+..|.|++..|+..+.-
T Consensus       157 ~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~  190 (208)
T 2hpk_A          157 FDVPQEAAYTFFEKADTDKSGKLERTELVHLFRK  190 (208)
T ss_dssp             TTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            4311111111112233467788888887776653

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.23  E-value=0.00081  Score=72.81  Aligned_cols=104  Identities=14%  Similarity=0.070  Sum_probs=57.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH--hhh------hchH
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV--KKI------LSNK  492 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~--~~~------~~~~  492 (670)
                      ..+.+|+++|.+|+||||+.++|...-.... .++.............|......+||..|.+.+  ...      ....
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3457999999999999999999986422111 011110000000001111112234777776322  221      1114


Q ss_pred             hhcccccEEEEEEECCCcccHHHHHHHHHHHHHh
Q 005908          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARL  526 (670)
Q Consensus       493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~  526 (670)
                      .++..+++.++|+|+++. ++.....|...+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            556667888999999997 566667776666654

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=96.23  E-value=0.0068  Score=58.07  Aligned_cols=146  Identities=13%  Similarity=0.074  Sum_probs=91.4

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhc----CCCcccCCcChhhHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ----HDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~f~~~~~  265 (670)
                      +.++....++++|...|.+++|.++..|+...-...++......++..+...+-...    ...-.+..++++.|+.+..
T Consensus        42 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~  121 (219)
T 3cs1_A           42 KTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRL  121 (219)
T ss_dssp             SSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHH
Confidence            345567788999999999999999999998765554555555555555443221100    0001134588888887743


Q ss_pred             HHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                      ....                                          ....+-++..|+.||.|++|.|+..|+..++...
T Consensus       122 ~~~~------------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~  159 (219)
T 3cs1_A          122 MLCY------------------------------------------IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKL  159 (219)
T ss_dssp             HHHH------------------------------------------HHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHH
T ss_pred             HHhc------------------------------------------cchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh
Confidence            2210                                          0113457889999999999999999999888643


Q ss_pred             ---CCCCCCCCCCCCCccccCCCccchhhhHhhhh
Q 005908          346 ---PESPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       346 ---~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                         +..+............+..|.|++..|+....
T Consensus       160 g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~  194 (219)
T 3cs1_A          160 EAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS  194 (219)
T ss_dssp             HHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence               11111111122223446777888887776544

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.22  E-value=0.023  Score=60.22  Aligned_cols=27  Identities=30%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ..+-.-|+|+|++++|||+|+|+|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            445667999999999999999999863

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=96.16  E-value=0.0082  Score=55.07  Aligned_cols=139  Identities=20%  Similarity=0.314  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (670)
                      ++....++++|...|.+++|.++..|+...-.. .+..+...++..+.+.+...     .+..++.+.|+.++...... 
T Consensus         7 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~EF~~~~~~~~~~-   79 (179)
T 2f2o_A            7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GNGTIDFPEFLTMMARKMKD-   79 (179)
T ss_dssp             CSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhccC-----CCCCCcHHHHHHHHHHHccC-
Confidence            344567889999999999999999998876543 56667777777666554322     24459999998886543210 


Q ss_pred             CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC
Q 005908          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD  351 (670)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~  351 (670)
                                                              ......++.+|+.+|.|++|.++.+|+..++..... +..
T Consensus        80 ----------------------------------------~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~-~~~  118 (179)
T 2f2o_A           80 ----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE-KLT  118 (179)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC---CCC
T ss_pred             ----------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCC
Confidence                                                    122345778899999999999999999888775421 111


Q ss_pred             CC---CCCCCccccCCCccchhhhHhhhhh
Q 005908          352 EA---PYKDAAETTALGNLTLKGFVSKWAL  378 (670)
Q Consensus       352 ~~---~~~~~~~~~~~~~~~~~~~l~~w~~  378 (670)
                      ..   ........+..|.|++..|+..+.-
T Consensus       119 ~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  148 (179)
T 2f2o_A          119 DEEVDEMIREADIDGDGQVNYEEFVQMMTA  148 (179)
T ss_dssp             HHHHHHHHHHHCTTCSSSEEHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence            11   0111223456677777777666543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.14  E-value=0.017  Score=54.38  Aligned_cols=67  Identities=12%  Similarity=-0.024  Sum_probs=49.1

Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLR  128 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~  128 (670)
                      ..+.+.|+|||+..  .......+..+|.+|+++..+...  ..+. .+.+.++..   .++.++.+|.|+.|..
T Consensus        74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            45789999999865  445567788899999999875544  4554 366666554   3467889999999954

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.09  E-value=0.006  Score=64.76  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+.--|+|+|++++|||+|+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45678999999999999999999864

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=96.09  E-value=0.0012  Score=62.28  Aligned_cols=138  Identities=21%  Similarity=0.247  Sum_probs=83.9

Q ss_pred             cHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHc
Q 005908          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (670)
Q Consensus       191 ~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~  270 (670)
                      .++....+.++|...|.+++|.++.+|+...-... +..+...++..+.+.+...     .+..++.+.|+.+.....  
T Consensus        52 ~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~-g~~~~~~~~~~l~~~~D~d-----~~g~I~~~EF~~~~~~~~--  123 (197)
T 3pm8_A           52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI-GYQKIPPDIHQVLRDIDSN-----ASGQIHYTDFLAATIDKQ--  123 (197)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-C----CHHHHHHHHC------------CEEHHHHHHTTCCHH--
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHHHH--
Confidence            45567788999999999999999999988766544 5566666766666554322     234588888877632111  


Q ss_pred             CCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC-CCC
Q 005908          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP  349 (670)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-~~p  349 (670)
                                                              .....+.++.+|+.||.|++|.++.+|+..++.... +.+
T Consensus       124 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~  163 (197)
T 3pm8_A          124 ----------------------------------------TYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENP  163 (197)
T ss_dssp             ----------------------------------------HHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCH
T ss_pred             ----------------------------------------hhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCC
Confidence                                                    011134688899999999999999999999988751 111


Q ss_pred             CCC---CCCCCCccccCCCccchhhhHhhh
Q 005908          350 WDE---APYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       350 ~~~---~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ...   .........+..|.|++..|+..+
T Consensus       164 ~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l  193 (197)
T 3pm8_A          164 LIDKAIDSLLQEVDLNGDGEIDFHEFMLMM  193 (197)
T ss_dssp             HHHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCCCcCcHHHHHHHH
Confidence            100   001112233566777777776554

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.0046  Score=57.13  Aligned_cols=137  Identities=20%  Similarity=0.339  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (670)
                      ++....++.+|...|.+++|.++..|+...-. .++..++..++..+...+.   ++  .+..+.++.|+.+....    
T Consensus         7 ~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~-~lg~~~~~~~~~~~~~~~d---~d--~~~~i~~~ef~~~~~~~----   76 (176)
T 2lhi_A            7 EEQIAEFKEAFALFDKDNNGSISSSELATVMR-SLGLSPSEAEVNDLMNEID---VD--GNHQIEFSEFLALMSRQ----   76 (176)
T ss_dssp             TTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHH-HHTCCCCHHHHHHHHTTTC---SS--CSSSBCTTHHHHHHTSS----
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HcCCChhHHHHHHHHHHhC---cC--CCccchHHHHHHHHHHh----
Confidence            34455688999999999999999999876543 4566777777666544322   11  24447777877653200    


Q ss_pred             CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC
Q 005908          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD  351 (670)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~  351 (670)
                                              ..             .....+-++..|+.||.|++|.++.+|+..++..... +..
T Consensus        77 ------------------------~~-------------~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~-~~~  118 (176)
T 2lhi_A           77 ------------------------LK-------------SNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE-KLT  118 (176)
T ss_dssp             ------------------------CC-------------SSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTC-CCC
T ss_pred             ------------------------cc-------------cCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCc-ccc
Confidence                                    00             1123456889999999999999999999999876421 211


Q ss_pred             CC---CCCCCccccCCCccchhhhHhhhh
Q 005908          352 EA---PYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       352 ~~---~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      ..   ..-.... +..|.|++..|+..-.
T Consensus       119 ~~ei~~l~~~~d-d~dG~I~~~EF~~~m~  146 (176)
T 2lhi_A          119 DAEVDDMLREVS-DGSGEINIQQFAALLS  146 (176)
T ss_dssp             HHHHHHHHHHHH-TTSSCBCTTHHHHHHT
T ss_pred             hHHHHHHHHhhc-CCCCeEeHHHHHHHHH
Confidence            11   0111122 6677788877776543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.04  E-value=0.069  Score=56.62  Aligned_cols=151  Identities=16%  Similarity=0.059  Sum_probs=80.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHh-------cCCCCCCCCCCcc-----------cceEEEEEEc----------------
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFL-------ERPFSENYAPTTG-----------EQYAVNVVDQ----------------  467 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~-------~~~~~~~~~~t~~-----------~~~~~~~vd~----------------  467 (670)
                      .+..|+++|.+||||||++..|.       |.......-.+.+           ....+.++..                
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            35678899999999999999987       3322211100100           0000111110                


Q ss_pred             -CCCceEEEEEecCChhhH-----hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEE
Q 005908          468 -PGGNKKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIA  540 (670)
Q Consensus       468 -~g~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~  540 (670)
                       ......+.++|++|....     ..+. ....+..++.+++|+|+..+..   .......+..       ..+ .-+|.
T Consensus       179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~-~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-------~l~i~gvVl  247 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHVDEAMMDEIK-QVHASINPVETLFVVDAMTGQD---AANTAKAFNE-------ALPLTGVVL  247 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTTCHHHHHHHH-HHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-------HSCCCCEEE
T ss_pred             HHhCCCCEEEEECCCcccccHHHHHHHH-HHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-------cCCCeEEEE
Confidence             002345778899885222     1111 1223457899999999986533   2222333322       234 34688


Q ss_pred             eCCCCCCCcccHHHHHHHHHHhCCCCcEE------------------eecccC-C-hHHHHHHHHHH
Q 005908          541 SKDDLKPYTMAVQDSARVTQELGIEPPIP------------------VSMKSK-D-LNNVFSRIIWA  587 (670)
Q Consensus       541 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------------------vSA~~g-~-v~~l~~~l~~~  587 (670)
                      ||+|...+.   ..+..+....+.+ +.+                  +|+..| + +..+++.+.+.
T Consensus       248 nK~D~~~~~---g~~l~i~~~~~~P-i~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~  310 (433)
T 2xxa_A          248 TKVDGDARG---GAALSIRHITGKP-IKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESK  310 (433)
T ss_dssp             ECTTSSSCC---THHHHHHHHHCCC-EEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHH
T ss_pred             ecCCCCccH---HHHHHHHHHHCCC-eEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHh
Confidence            999976432   2334555666654 222                  345556 4 77777776554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.98  E-value=0.039  Score=55.61  Aligned_cols=63  Identities=14%  Similarity=-0.009  Sum_probs=36.8

Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      ...+.++++.|++.+..   +...+..+.+..     +. .++++||.|....   -..+..+...++.+ +.+++
T Consensus       219 ~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-----~~-t~iivTh~d~~a~---gg~~l~i~~~~~~p-i~~ig  281 (304)
T 1rj9_A          219 EEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-----GL-TGVIVTKLDGTAK---GGVLIPIVRTLKVP-IKFVG  281 (304)
T ss_dssp             TCCSEEEEEEETTBCTH---HHHHHHHHHHHH-----CC-SEEEEECTTSSCC---CTTHHHHHHHHCCC-EEEEE
T ss_pred             CCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-----CC-cEEEEECCccccc---ccHHHHHHHHHCCC-eEEEe
Confidence            45777888999876532   333344443321     23 4667899986542   22344566667765 66665

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=95.91  E-value=0.0072  Score=55.20  Aligned_cols=130  Identities=18%  Similarity=0.306  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCcc
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  274 (670)
                      ...++++|...|.+++|.++.+|+...-......++...++..+.+.+...     .+..++.+.|+.++..        
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~ef~~~~~~--------   72 (172)
T 2znd_A            6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRE-----NKAGVNFSEFTGVWKY--------   72 (172)
T ss_dssp             CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSS-----SSSEECHHHHHHHHHH--------
T ss_pred             hhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCC-----CCCcCCHHHHHHHHHH--------
Confidence            346788999999999999999999877665433667777777776655321     2345899999887441        


Q ss_pred             chhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCC-
Q 005908          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA-  353 (670)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~-  353 (670)
                                                              .+-++.+|+.+|.|++|.++.+|+..++..... +.... 
T Consensus        73 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~~~~~  111 (172)
T 2znd_A           73 ----------------------------------------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY-RLSDQF  111 (172)
T ss_dssp             ----------------------------------------HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC-CCCHHH
T ss_pred             ----------------------------------------HHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCC-CCCHHH
Confidence                                                    134778999999999999999999888876421 11110 


Q ss_pred             --CCCCCccccCCCccchhhhHhhhhh
Q 005908          354 --PYKDAAETTALGNLTLKGFVSKWAL  378 (670)
Q Consensus       354 --~~~~~~~~~~~~~~~~~~~l~~w~~  378 (670)
                        ........+..|.+++..|+..+..
T Consensus       112 ~~~~~~~~d~~~dg~i~~~eF~~~~~~  138 (172)
T 2znd_A          112 HDILIRKFDRQGRGQIAFDDFIQGCIV  138 (172)
T ss_dssp             HHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence              1111233456778888888877654

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=95.91  E-value=0.038  Score=52.88  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=95.8

Q ss_pred             cccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHH
Q 005908          187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (670)
Q Consensus       187 ~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~  266 (670)
                      ...+.++....++++|...|.+++|.++.+|+...-.. .+..+...+++.+.+.+...     .+..++.+.|+.+...
T Consensus        42 ~~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~-~g~~~~~~~~~~l~~~~D~d-----~dg~I~~~EF~~~~~~  115 (220)
T 3sjs_A           42 LNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFP-GGIRLSPQTALRMMRIFDTD-----FNGHISFYEFMAMYKF  115 (220)
T ss_dssp             GGGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBG-GGBCCCHHHHHHHHHHHCTT-----CSSCBCHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCCcCCHHHHHHHHHH
Confidence            34566778888999999999999999999998776544 36677787777777766322     2455999999888553


Q ss_pred             HHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC
Q 005908          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (670)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~  346 (670)
                      .                                                +-++..|+.+|.|++|.++.+|+..++...-
T Consensus       116 ~------------------------------------------------~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g  147 (220)
T 3sjs_A          116 M------------------------------------------------ELAYNLFVMNARARSGTLEPHEILPALQQLG  147 (220)
T ss_dssp             H------------------------------------------------HHHHHHHHHHCCSSTTEECHHHHHHHHHHHT
T ss_pred             H------------------------------------------------HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhC
Confidence            1                                                2377899999999999999999998887531


Q ss_pred             -CCC-CCCCCCCCCccccCCCccchhhhHhhhhh
Q 005908          347 -ESP-WDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (670)
Q Consensus       347 -~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~  378 (670)
                       ..+ ........... +..|.|++..|+.....
T Consensus       148 ~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~  180 (220)
T 3sjs_A          148 FYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAF  180 (220)
T ss_dssp             CCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHH
Confidence             111 11111112233 56678888888876654

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=95.90  E-value=0.0062  Score=57.33  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=91.7

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      +.++....+.++|...|.+++|.++..|+... . .++....      +..++...-.+  .+..++++.|+.+......
T Consensus        23 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~-~lg~~~~------~~~l~~~~D~d--~dg~i~~~EF~~~~~~~~~   92 (202)
T 2bec_A           23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-G-ALAVNPL------GDRIIESFFPD--GSQRVDFPGFVRVLAHFRP   92 (202)
T ss_dssp             CCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-H-HHHHSTT------HHHHHHTTSCS--SCCCCCHHHHHHHHGGGSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-H-hcCCCcc------HHHHHHHhCCC--CCCcCcHHHHHHHHHHhcc
Confidence            45667778999999999999999999999877 2 2222222      33344333222  2445999999887542210


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                      .. .                    ...| ...   ...........+.++.+|+.||.|++|.|+.+|+..++....+.+
T Consensus        93 ~~-~--------------------~~~~-~~~---~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~  147 (202)
T 2bec_A           93 VE-D--------------------EDTE-TQD---PKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQ  147 (202)
T ss_dssp             CC-H--------------------HHHC---------CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSC
T ss_pred             cc-h--------------------hccc-ccc---cccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCC
Confidence            00 0                    0001 000   000112344567799999999999999999999999987653333


Q ss_pred             CCCCC---CCCC----ccccCCCccchhhhHhhhh
Q 005908          350 WDEAP---YKDA----AETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       350 ~~~~~---~~~~----~~~~~~~~~~~~~~l~~w~  377 (670)
                      .....   ....    ...+..|.|++..|+..+.
T Consensus       148 ~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~  182 (202)
T 2bec_A          148 VTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE  182 (202)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence            22111   1111    3345677788777776554

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.88  E-value=0.004  Score=58.48  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=22.8

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ..+.--|+|+|++|||||||++.|.+.
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            344557999999999999999999864

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=95.88  E-value=0.009  Score=55.62  Aligned_cols=154  Identities=14%  Similarity=0.160  Sum_probs=86.4

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHH----hhhhcCCCCCHHHHH--HHHHHHhhhcCCCcccCCcChhhHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEF----QVKCFNAPLQPAEIV--GVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~----q~~~~~~~l~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~f~~~  263 (670)
                      ..++....++++|...|.+++|.++.+|+...    -...++......++.  .+..++...-.+  .+..++.+.|+.+
T Consensus        14 ~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d--~~g~i~~~EF~~~   91 (195)
T 1qv0_A           14 DNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME--YGKEIAFPQFLDG   91 (195)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCC--TTCCBCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCC--CCceEcHHHHHHH
Confidence            35677788999999999999999999999732    123345444443211  233344333221  2445999999998


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (670)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~  343 (670)
                      +.........  .|.      -.     .                  ...-..++...|+.||.|++|.|+.+|+..++.
T Consensus        92 ~~~~~~~~~~--~~~------~~-----~------------------~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~  140 (195)
T 1qv0_A           92 WKQLATSELK--KWA------RN-----E------------------PTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK  140 (195)
T ss_dssp             HHHHHHHHHH--HHH------TT-----C------------------CCHHHHHHHHHHHHTC----CEECHHHHHHHHH
T ss_pred             HHHHHhhhhh--ccc------cc-----H------------------HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            7654432100  000      00     0                  001123455899999999999999999988886


Q ss_pred             cCCCCCCCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908          344 TAPESPWDE---APYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       344 ~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      ..- .+...   .........+..|.|++..|+..+.
T Consensus       141 ~~g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~  176 (195)
T 1qv0_A          141 ISG-ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHL  176 (195)
T ss_dssp             HHS-SCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             HhC-CCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            531 11111   0111122345677788777766554

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=95.86  E-value=0.0077  Score=52.91  Aligned_cols=130  Identities=21%  Similarity=0.281  Sum_probs=88.6

Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchh
Q 005908          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (670)
Q Consensus       198 l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (670)
                      ++++|...|.+++|.++.+|+...-.. .+..+...++..+.+.        -.+..++.+.|+.+......        
T Consensus         7 l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~--------   69 (145)
T 2bl0_B            7 IQECFQIFDKDNDGKVSIEELGSALRS-LGKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK--------   69 (145)
T ss_dssp             HHHHHHHHCTTCSSCEEGGGHHHHHHH-TTCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC--------
T ss_pred             HHHHHHHhCCCCcCccCHHHHHHHHHH-hCCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh--------
Confidence            889999999999999999998876554 3667777777766654        12445899998887431100        


Q ss_pred             HHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC---CC
Q 005908          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE---AP  354 (670)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~---~~  354 (670)
                                                      -.......++.+|+.+|.|++|.++.+|+..++.... .+...   ..
T Consensus        70 --------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g-~~~~~~~~~~  116 (145)
T 2bl0_B           70 --------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLG-DALTSSEVEE  116 (145)
T ss_dssp             --------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSS-SCCCHHHHHH
T ss_pred             --------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcC-CCCCHHHHHH
Confidence                                            0122345688999999999999999999998887642 12111   11


Q ss_pred             CCCCccccCCCccchhhhHhhhh
Q 005908          355 YKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      .......+..|.+++..|+..+.
T Consensus       117 ~~~~~d~~~dg~i~~~eF~~~~~  139 (145)
T 2bl0_B          117 LMKEVSVSGDGAINYESFVDMLV  139 (145)
T ss_dssp             HHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHHHcCCCCCCcEeHHHHHHHHH
Confidence            11223446677788877776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	670
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-19
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-07
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-18
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-08
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-16
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-07
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-15
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-04
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-14
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-09
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-14
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-12
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-14
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	5e-11
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-14
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-12
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-14
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-10
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-13
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-09
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-13
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	7e-12
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-13
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-13
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-13
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-09
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-12
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	6e-08
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-12
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-06
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-12
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-11
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-12
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-09
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-11
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-05
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-11
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-10
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-11
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-10
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-11
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-08
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	7e-11
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-07
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-11
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	9e-11
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-10
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-07
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-10
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-08
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-10
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-10
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	7e-10
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-04
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-09
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-09
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-05
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-09
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-09
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-07
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-09
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-09
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-05
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	6e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-05
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-07
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-08
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-06
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-08
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-07
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	8e-05
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-07
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-07
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.002
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	7e-07
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-04
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-06
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	8e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	7e-05
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	8e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-04
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-05
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.004
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-04
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-04
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	1e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	5e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	7e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.001
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	0.003
d1uhka1	187	a.39.1.5 (A:3-189) Calcium-regulated photoprotein	0.003
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	0.004
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.004
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	0.004

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 3e-19
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ +  T + P + +P V              V + + DT+   +
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 132 NATSLEEVMGPI-------MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHPT 179
           +     +            +   +EI     +ECSA T   +  VF  A +AVL P 
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +C++ G    GK+ LL S+    F   Y PT  + Y+ N      G    L L +   +
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN--VMVDGKPVNLGLWDTAGQ 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                L       +    I     S         +   EV     +     P +L+ +K 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN----TPIILVGTKL 119

Query: 544 DL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
           DL             K   +       + +E+G    +  S  ++  L  VF   I A  
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 590 HP 591
            P
Sbjct: 180 CP 181

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 8e-18
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ +  T   P + VP V     +      +   + + DT+   +
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + D  ++ ++    S+   +   W+PE+     K P ++ G ++DLR D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 132 NATSLEEVMGPIMQQFREIE---------TCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
           +                  E           VECSA T   + +VF  A  A L P  P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 20/182 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +C++ G    GK+ LL S+    F   Y PT  + Y    V   G      +     +E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              ++           +  F   S   +   + K +        +      P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-----TPFLLVGTQI 117

Query: 544 DL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
           DL             K   +  + + ++ ++L     +  S  ++  L NVF   I AA 
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

Query: 590 HP 591
            P
Sbjct: 178 EP 179

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 5e-16
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           + VVVGD   GK+ L+ + A ++ PE+  P V     +       +  + + DT+   + 
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
                      D  ++ ++    ++   +   W+PEL+     VP ++ G ++DLR D  
Sbjct: 71  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130

Query: 133 ATSLEEVMGPIM-------QQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
             +    M           +  +EI  C  VECSA T   +  VF  A  A+L P
Sbjct: 131 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +C++ G    GK+ LL S+    F E Y PT  + YAV+ V   G      +     +E
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQE 68

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              ++      +    +  F   +   +   + + +        ++    VP LLI ++ 
Sbjct: 69  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWV-----PELKEYAPNVPFLLIGTQI 123

Query: 544 DL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
           DL             K   + V+   ++ +E+G    +  S  ++  L  VF   I A  
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

Query: 590 HP 591
            P
Sbjct: 184 TP 185

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.2 bits (173), Expect = 6e-15
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            ++VVVGD   GK++L+   A +  PE  VP V        +    R+ +++ DTS S  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD- 130
                      +DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 131 --------HNATSLEEVMGPIMQQFREIETCVECSATTMI-QVPDVFYYAQKAVL 176
                   H  T +    G  M +     T +ECSA      V D+F+ A  A +
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GK+ALL+ F +  F ENY PT  E Y  +        + +L         
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
                    +    D  +  +D S   +      +L +     ++       LL+  K D
Sbjct: 64  DNV---RPLSYPDSDAVLICFDISRPETL---DSVLKKWKGEIQEFCPNTKMLLVGCKSD 117

Query: 545 LKPYTMAVQDSARVTQ-------------ELGIEPPIPVSMKSKD--LNNVFSRIIWAA 588
           L+     + + +   Q             ++G    I  S    +  + ++F     A 
Sbjct: 118 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 1e-14
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 10/166 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           + +++GD G GKS L+     +      P                 ++ + I DT+    
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   ++ Y   ++ST + LSS+             II+ G K DL    
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAV 175
           + T  E       +QF E      +E SA T   V D F  A K +
Sbjct: 126 DVTYEE------AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 8e-09
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G    GKS LL+ F E+ F  +   T G ++   +++  G   K  I     +
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + +   +         + VYD +   ++      L +       +      +LI +K
Sbjct: 64  ERFRAV--TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN---LTNPNTVIILIGNK 118

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL+       + A+   E      +  S K+ + + + F    
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 1e-14
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ +L G    GKS LL+ F    F+     T G ++A   +   G   K  I     +
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  ++I             + VYD +   +++  +  L E+    +     +  +L+ +K
Sbjct: 64  ERYRRI--TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNK 118

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL+       D AR   E      I  S      +   F  I+
Sbjct: 119 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 162

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           +VV++GD G GKS+L++         +                D   +   I DT+    
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +   +   + A   +L Y   +  T   +  +        +  + I++ G K DLR   
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
              + E              + +E SA     V + F      +  
Sbjct: 126 AVPTDEARAFAEKNNL----SFIETSALDSTNVEEAFKNILTEIYR 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.2 bits (171), Expect = 1e-14
 Identities = 23/165 (13%), Positives = 57/165 (34%), Gaps = 6/165 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           +++++GD G GK+ ++   + ++                    D  R+ + I DT+    
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  ++L Y    + +   + ++           V  ++ G K D+    
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
             +        +    +     +E SA   I V + F+   + + 
Sbjct: 128 QVSKERGEKLALDYGIK----FMETSAKANINVENAFFTLARDIK 168

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (144), Expect = 5e-11
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GK+ +L  F E  F+  +  T G  + +  ++  G   K  I     +
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I             + VYD ++E S+     +   +  + E +   V  +++ +K
Sbjct: 66  ERFRTI--TTAYYRGAMGIMLVYDITNEKSFDN---IRNWIRNIEEHASADVEKMILGNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            D+       ++             +  S K+   + N F  + 
Sbjct: 121 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (166), Expect = 5e-14
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 7/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP--DFYPDRVPVTIIDTSSSLE 71
           +++++GD G GKS L+     +                   D    +V + I DT+    
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  ++L Y    + T + +  ++         +  +++ G K D+    
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 123

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                    G  + +   I   +E SA     V ++F+   K + 
Sbjct: 124 VTAD----QGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQ 163

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (153), Expect = 3e-12
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 7/165 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  I     
Sbjct: 1   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I             I VYD +DE ++   K+    V     D       LL+ +
Sbjct: 61  QERFRTI--TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE---AQLLLVGN 115

Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           K D++   +       + +ELGI P I  S K+ D +N +F  + 
Sbjct: 116 KSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLA 159

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 5e-14
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP--VHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           + +++GD G GKS L+     +                   +    ++ + I DT+    
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y   ++ T + L+S+     +     + I++ G K DL    
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
           +                     +E SA T   V + F    K +  
Sbjct: 125 DVKR----EEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 2e-10
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G    GKS LL  F ++ F   +  T G ++   +V+  G   K  I     +
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I   +         + VYD +   ++      L +  +        +  +LI +K
Sbjct: 63  ESFRSI--TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNK 117

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL+      ++             +  S K+   +   F    
Sbjct: 118 SDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 161

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 2e-13
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           ++V++G+ G GK+ L+        P           +      +   V   I DT+    
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A+A++LTY    + +   L  +     +    KV  ++ G K+D     
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID---LA 123

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY-AQKAVLH 177
               + +       + +++   +E SA     V  +F   A + +  
Sbjct: 124 ERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISE 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 4e-09
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ +L G    GK+ L+  F +  F      T G  + +  V+  G   K  I     +
Sbjct: 5   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I   +    S +  I  YD + E S++   E L E+ +    +   V  +L+ +K
Sbjct: 65  ERFRSI--TQSYYRSANALILTYDITCEESFRCLPEWLREIEQ---YASNKVITVLVGNK 119

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL       Q  A    E      +  S K  D +  +F  + 
Sbjct: 120 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 163

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (163), Expect = 2e-13
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 6/170 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--YPDRVPVTIIDTSSSLE 71
           +++++G+ G GKS L+   + ++                        V + I DT+    
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +   +   + +  +++ Y    Q + + +  +     R     V  ++ G K DL+   
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
                         +   +ET     A     V D F    + +    + 
Sbjct: 128 VVEYDVAKEFADANKMPFLETS----ALDSTNVEDAFLTMARQIKESMSQ 173

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (151), Expect = 7e-12
 Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 6/184 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++ +Y  T G  + +  V+  G   K  I     +
Sbjct: 6   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+          I VYD +D+ S+   K  L E+ R    +   V  LL+ +K
Sbjct: 66  ERFRTITSS--YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST---VLKLLVGNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAEHPHLNIPETETG 601
            DLK   +   D A+   +    P +  S      + + F  +    +         ET 
Sbjct: 121 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 180

Query: 602 RNRK 605
           + ++
Sbjct: 181 QKKE 184

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 3e-13
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTIIDTSSSLE 71
           + +V+G+ GTGKS L+     +   +                       + I DT+    
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y    + T + L+++           + II+ G K       
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK-----KD 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVLH 177
                E       +  +E E   +E SA T   V + F    + +L+
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ L+ G    GKS LL+ F+E+ F ++   T G ++   +++  G   K  I     +
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + +   +         + VYD +   ++     L   +      +   +  +L  +K
Sbjct: 65  ERFRSV--TRSYYRGAAGALLVYDITSRETY---NALTNWLTDARMLASQNIVIILCGNK 119

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL          A    +      +  S  + + +   F +  
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 163

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 4e-13
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++V+VGD   GK+ L+   + +  PE   P      +       +     +  ++ LE+ 
Sbjct: 4   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 63

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
            +L        D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +
Sbjct: 64  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 123

Query: 133 ATSLEEVMGPIMQQFREIE---------TCVECSATTMIQVPDVFYYAQKAVL 176
                  M     +  E             +ECSA T   V +VF  A +A L
Sbjct: 124 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 20/179 (11%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GK+ LL    +  F E Y PT  E Y  ++       +  L      E+
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             +    +        +   +       +        V      +     VP +L+ +K 
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV------KHFCPNVPIILVGNKK 116

Query: 544 D-------------LKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
           D             +K   +  ++   +   +G    +  S K+KD +  VF     AA
Sbjct: 117 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 5e-13
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +VVV+G  G GKS+L     T +  EK  P +    R   +       + I+DT+ + + 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH 131
               +  +K     +L Y+   Q +   +       +R     KVP+I+ G K+DL  + 
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLH 177
             +S E       +   E   C  +E SA +   V ++F    + + +
Sbjct: 125 EVSSSE------GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 3e-09
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F+   F E Y PT  + Y   +      +   ++     E+
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                    +      +   + +       K  ++ ++ V R        VP +L+ +K 
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-----YEKVPVILVGNKV 118

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           DL+          R   E    P +  S KSK  ++ +F+ I+
Sbjct: 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 1e-12
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 8/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           ++V +G++  GK+SLI     +S             L    Y +   +   + DT+    
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +  +   ++ + A V+ Y     ++  + + +           V I++ G K DL    
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAV 175
                +  +    ++ +E+    +E SA     V  +F     A+
Sbjct: 122 -----QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 6e-08
 Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +  G Q+ GK++L+  F+   F   Y  T G  +    +       +  +     +E
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + +      +      + VYD ++  S+++T + + +V     + G  V  +L+ +K 
Sbjct: 61  RFRSL--IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT---ERGSDVIIMLVGNKT 115

Query: 544 DLK-PYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           DL     +++++  R  +EL +   I  S K+   +  +F R+ 
Sbjct: 116 DLADKRQVSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVA 158

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.7 bits (154), Expect = 2e-12
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 8/166 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLE 71
           +++++G+   GK+S +   A +S                       R+ + I DT+    
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y    + + + +  +             +++ G K       
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK-----CD 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
                        Q    +     E SA   I V   F      + 
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ L+ G  + GK++ L  + +  F+  +  T G  + V  + +     K  I     +E
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + I             I +YD ++E S+   ++   ++     D+      LL+ +K 
Sbjct: 66  RYRTI--TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ---VLLVGNKC 120

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D++   +   +  R   +         S K    +   F R++
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 3e-12
 Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 4/168 (2%)

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           + ++F+ +L G    GKS+L+N ++   F      T G ++    ++  G      I   
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLL 538
             +E  + +          D  +  +   D  S++       E     +       P ++
Sbjct: 63  AGQERFRSL--RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           + +K D+    ++ +++    ++ G  P    S K    +   F   +
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 5e-11
 Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +V+++GD G GKSSL+    T     ++   +                   I  ++  E 
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDL 127
              L     R     L       S   +  S W  E             P ++ G K+D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                +T   E      +   +     E SA     V   F  A + VL
Sbjct: 128 SERQVST---EEAQAWCRDNGDYP-YFETSAKDATNVAAAFEEAVRRVL 172

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 62.6 bits (151), Expect = 4e-12
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +V++VG  G GKS+L      +   E   P  A +               I  ++  E+ 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGD 130
             + +   R  +  +  ++  +  + +  ++ +  ++ R++    VP ++ G K DL   
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAA-TADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
              +  E        Q+      VE SA T   V  VF+   + + 
Sbjct: 125 RQVSVEE--AKNRADQWN--VNYVETSAKTRANVDKVFFDLMREIR 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 54.2 bits (129), Expect = 4e-09
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GKSAL   F+   F E+Y PT  + Y   VV      +  ++     E+
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                 +      S +  + V+  ++  S+  T +   ++ R+ ED    VP LL+ +K 
Sbjct: 65  YAAIRDNYFR---SGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKS 119

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           DL+       + A+   +      +  S K++  ++ VF  ++
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 3e-11
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 7/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP---DRVPVTIIDTSSSL 70
           +V++VGD G GK+ L+      +                        +V + + DT+   
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
             +   +   + A A++L Y    +++   + ++        +  V +++ G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                 +   G  + +   +   +E SA T + V   F    K +
Sbjct: 128 RVVKRED---GEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKEL 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
            F+ +L G    GK+ LL  F +  F    +  T G  +   V+D  G   K  +     
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + +             + +YD +++ S+   +  L E+    +        LL   
Sbjct: 66  QERFRSVTHAYY--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA--LMLLGNK 121

Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            D      +  +D  ++ +E G+ P +  S K+   ++  F+ I 
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 3e-11
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 9/166 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++VVVG  G GKS+L          ++  P    +            +  I  ++  E  
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDH 131
             + ++  R     L       +        +  +++R++    VP+++ G K DL    
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
             +             R      +E SA T   V D FY   + + 
Sbjct: 125 VESR------QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL    ++  F + Y PT  + Y   VV       +T +L  +   
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG----ETCLLDILDTA 59

Query: 484 GVKKILSNKEALASCDVTIFV-YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G ++  + ++            +  ++  S++   +   ++ R+ +     VP +L+ +K
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNK 117

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL   T+  + +  + +  GI P I  S K++  + + F  ++
Sbjct: 118 CDLAARTVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLV 160

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 6e-11
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT---IIDTSSSL 70
           +V+++GD G GK+SL+     +   ++         L  +   D   V    + DT+   
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK----VPIIVAGCKLD 126
             +       + AD  VL Y     S+   + S+    L    +      P ++ G K+D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                   S E+    + +   +I      SA   I V   F    ++ L 
Sbjct: 124 AEESKKIVS-EKSAQELAKSLGDIP-LFLTSAKNAINVDTAFEEIARSALQ 172

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (136), Expect = 5e-10
 Identities = 33/172 (19%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           N+ + ++ G    GK++L++ ++   +S+ Y  T G  +    V   G    T+ + +  
Sbjct: 1   NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA 60

Query: 482 EEGVKKILSNKEALAS-CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGY-GVPCLLI 539
             G ++  S   A     D  + VYD ++  S++  K    E       +     P +++
Sbjct: 61  --GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 118

Query: 540 ASKDDLKP--YTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
            +K D +     ++ + +  + + LG  P    S K+   ++  F  I  +A
Sbjct: 119 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 7e-11
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRV-PVTIIDTSSSLE 71
            ++VVVG  G GKS+L              P    +             + I+DT+   E
Sbjct: 7   HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGD 130
                 + ++     +L +A N + + + +   +   LR  +    P+++ G K DL   
Sbjct: 67  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 126

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                                   E SA   + V + F    +AV 
Sbjct: 127 RQVPR----SEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 6/165 (3%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
              + ++ G    GKSAL   F++  F  +Y PT  + Y               +     
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKI---CSVDGIPARLDILDT 61

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
               +     ++ + +    + V+  +D  S+    +L  ++ R+ +   +  P +L+ +
Sbjct: 62  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF--PVVLVGN 119

Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           K DL+      +  A              S K +  ++  F +++
Sbjct: 120 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 7e-11
 Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           +VV++G+   GK+SL+         +K       + L          V   I DT+    
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                    + ++  +L Y    + +  ++ ++     + L  ++ + + G K+DL  + 
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + +          + + E         SA     + ++F    K ++
Sbjct: 125 HVSI------QEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +L G    GK++L+  + E  F++ +  T G  +    ++  G      I     +E
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
               +          +  I VYD +DE S+++ K  + E+ +          C++    D
Sbjct: 64  RFHAL--GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 119

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
             K   +++Q++    + +G       S K    +  +F  + 
Sbjct: 120 LEKERHVSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLC 161

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 8e-11
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           VR++++G    GK++L+   A+E +    P      +           + + D     + 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK---SVQSQGFKLNVWDIGGQRKI 73

Query: 73  KGKLNEELKRADAVVLTY-ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
           +       +  D ++    + +++                    VP+++   K DL    
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
            A+ + E +     + R  +    CSA T   V D  
Sbjct: 134 PASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGM 169

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           S+ RK +       R LL G  NAGK+ LL        S           +V        
Sbjct: 4   SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ------- 56

Query: 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS 530
           ++   +         K     +    + D+ I+V DS+D   ++ T + L E+    E+ 
Sbjct: 57  SQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE--EEK 114

Query: 531 GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKSKD-LNNVFS 582
              VP L+ A+K DL    +    ++ + + L +             S  + + + +  +
Sbjct: 115 LSCVPVLIFANKQDL----LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170

Query: 583 RII 585
            + 
Sbjct: 171 WVC 173

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 9e-11
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 5/164 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VV+G  G GKS+L          EK  P +    R   +    +  + I+DT+ + + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
               +  +K      L Y+   QST + L       LR  + + VP+I+ G K DL  + 
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                +E    + +Q+      +E SA + I V ++FY   + +
Sbjct: 125 VVG--KEQGQNLARQWCNCA-FLESSAKSKINVNEIFYDLVRQI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 5/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F++  F E Y PT  + Y   V        +  +L+ +   
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDC----QQCMLEILDTA 59

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
           G ++  + ++          +  S    S     + L E     +D+      L+    D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
                 +  +    + ++      +  S KSK  +N +F  ++
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 3/162 (1%)

Query: 11  TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSS 68
           T +++V++G+   GKSS++    +    E   P    A            V   I DT+ 
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 69  SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
                       + A A ++ Y   +  +  +   +      +    + I + G K+D+ 
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170
            +     +    G  + + + +    E SA T   V DVF  
Sbjct: 122 QEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLG 162

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 11/166 (6%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + +L G    GKS+++  F+   F+EN  PT G  +    V       K  I     +E 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
              +        +    + VYD +   S+ + +  + E+      +   +   L+ +K D
Sbjct: 65  FASL--APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHE---QASKDIIIALVGNKID 119

Query: 545 ----LKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
                    +A ++  ++ +E G+      S K+ + +N+VF  I 
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIG 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 3e-10
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 8/172 (4%)

Query: 8   SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTS 67
           S +   R+VVVG  G GKS+L              P    +        DR     I  +
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 68  SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKL 125
           +  E  G + E+  R     L                +  ++ R++   + P+I+ G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 126 DLRGDHNATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
           DL      T  E       Q  R+++ T +E SA   + V   F+   + + 
Sbjct: 121 DLDHQRQVTQEE-----GQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 31/168 (18%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
           +  +R ++ G    GKSAL   F++  F  +Y PT  + Y    V       +   L  +
Sbjct: 3   QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDD----RAARLDIL 58

Query: 481 PEEGVKKILSNKEALAS-CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
              G ++  + +E      +  + V+  +D  S++   +   ++ R+ +   +  P +LI
Sbjct: 59  DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF--PMILI 116

Query: 540 ASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            +K DL     +  ++  ++ ++L +   +  S K +  ++  F  ++
Sbjct: 117 GNKADLDHQRQVTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELV 163

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (138), Expect = 3e-10
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 4/167 (2%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GK++L+N ++ + FS  Y  T G  +    V          I       
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI--WDTAG 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARL-GEDSGYGVPCLLIASK 542
             +            D  + V+D +   ++K       E             P +++ +K
Sbjct: 61  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
            DL+   +A + +          P    S K    +   F  I   A
Sbjct: 121 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (136), Expect = 6e-10
 Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP--DRVPVTIIDTSSSLE 71
           +V+++GD G GK+SL+     +    +         L  +       V + I DT+    
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI----KVPIIVAGCKLDL 127
            +       + AD  VL +     +T   L S+    L +         P +V G K+DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                AT   +         +      E SA   I V   F    +  L
Sbjct: 124 ENRQVATKRAQ----AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 7e-10
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++V++G+   GKSSL+         E        A            V   I DT+    
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                    + A A ++ Y    + + +R  ++     R+    + I ++G K DL    
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                E                +E SA T + V ++F    K + 
Sbjct: 128 AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMAIAKKLP 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           F+ +L G    GKS+L+  F++  F E    T G  +
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 43

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 16/163 (9%), Positives = 50/163 (30%), Gaps = 5/163 (3%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS 68
           +    +V++VG    GK++++   +   V    P + +      +   +     + D   
Sbjct: 12  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE---EIVINNTRFLMWDIGG 68

Query: 69  SLENKGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL 127
               +   N      + V++     +++         +         K  +++   K D+
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 128

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170
           +       + + +     +  +      C A T   +     +
Sbjct: 129 KECMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEW 170

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 21/170 (12%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G  NAGK+ +L  F                  + + +         ++ +I  +
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN------TRFLMWDIGGQ 69

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              +   N     +  V +   DS+D      T+E L +   L  +       L+ A+K 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVV-VDSTDRERISVTREELYK--MLAHEDLRKAGLLIFANKQ 126

Query: 544 DLKPYTMAVQDSARVTQELGIE-------PPIPVSMKSKD-LNNVFSRII 585
           D+          A ++Q L +                + + L      ++
Sbjct: 127 DV----KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 172

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 7/164 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++V+VGD GTGK++ +    T    +K V  +                   +  ++  E 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
            G L +         +           +    W  +L R+   +PI++ G K+D++    
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 124

Query: 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                     I+   ++     + SA +       F +  + ++
Sbjct: 125 ------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 9/163 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +L G    GK+  +   L   F + Y  T G +    V     G  K  +     +E
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
               +             I ++D +   ++K       ++          +P +L  +K 
Sbjct: 64  KFGGLRDGYY--IQAQCAIIMFDVTSRVTYKNVPNWHRDL----VRVCENIPIVLCGNKV 117

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D+K   +  +      ++  +     +S KS       F  + 
Sbjct: 118 DIKDRKVKAKSIVF-HRKKNL-QYYDISAKSNYNFEKPFLWLA 158

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 9/158 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           R+++VG    GK++++       +   +P +              +  T+ D     + +
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIR 58

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDHN 132
                  +    ++     N +  ++      +  L   E++   ++V   K D     N
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD---LPN 115

Query: 133 ATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           A +  E+   +                AT+   + +  
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 11/174 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           RV V G  G GKSSL+      +  E   P    T          +    I  ++     
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 74  GKLNEELKRADAVVLTYACNQQST---LSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
             +           +              +     + E++     +PI++ G K D    
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123

Query: 131 HNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHPTAPL 182
               S E       +       C  +E SA     V ++F          T  L
Sbjct: 124 REVQSSE------AEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 171

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 7/166 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           N +R  +FG    GKS+L+  F++  F E+Y PT  + Y   +             Q   
Sbjct: 1   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTL----QITD 56

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
             G  +  + +    S      +  S          + + E     +     +P +L+ +
Sbjct: 57  TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 116

Query: 542 KDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           K D  P       ++  + +       +  S K    +  +F  ++
Sbjct: 117 KCDESPSREVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELL 161

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G    GK++++           +P V              V   + D     + 
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKI 69

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
           +            ++    C  +  +          +   E++   I++   K DL    
Sbjct: 70  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
               ++E +G    + R         AT+   + +  
Sbjct: 130 KPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGL 165

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 54.6 bits (130), Expect = 3e-09
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G  G GK++++       V    P +              + + + D       
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE---TLSYKNLKLNVWDLGGQTSI 74

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
           +           AV+       +  +S  S      L+  E++   ++V   K D  G  
Sbjct: 75  RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
           +A+ + + +  +  + R     V  SA     + +  
Sbjct: 135 SASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGL 170

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 13/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G   AGK+ +L             PT G     NV      N K L + ++  +
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG----FNVETLSYKNLK-LNVWDLGGQ 71

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              +         +  V     DS+D+       + L  + +  E+       L+ A+K 
Sbjct: 72  TSIRPYWRCYYADTAAVIFV-VDSTDKDRMSTASKELHLMLQ--EEELQDAALLVFANKQ 128

Query: 544 DLKPYTMAVQDSARVTQELGIEPP---IPVSMKSKD-LNNVFSRII 585
           D      A + S  +      +     +  S    + +      +I
Sbjct: 129 DQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 174

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 3e-09
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 7/166 (4%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R+ V+GD  +GKSSLI    T S            +           V I + + + + 
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
           K     +      V      N    +SRL              + + + G +  +     
Sbjct: 66  KFSGWAD--AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123

Query: 133 ATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
               +           +++ C   E  AT  + V  VF    + V+
Sbjct: 124 RVVGDA---RARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 9e-04
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 13/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R  + G   +GKS+L++ FL   +      T  EQY         G    ++++E    
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQY--KKEMLVDGQTHLVLIREEAGA 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              K           D  IFV+   DE S++    L  +++ L  +   G+   L+ ++D
Sbjct: 63  PDAKFSGW------ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116

Query: 544 DLKPYTMAVQDSARVTQ---ELGIEPPIPVSMKSKD-LNNVFSRII 585
            +   +  V   AR      ++               ++ VF  + 
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVA 162

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 2/156 (1%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           + + +VG + +GK++ +   A+    E + P               + +  I       +
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
             +       A   ++  A  ++   S+   + L +  +L+  +P++V G K DL G  +
Sbjct: 63  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ-GIPVLVLGNKRDLPGALD 121

Query: 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
              L E M     Q REI  C   S      +    
Sbjct: 122 EKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITL 156

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 12/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
               L G Q +GK+  +N      F+E+  PT G                 +  Q     
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             ++      A+                +               +    G+P L++ +K 
Sbjct: 63  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL--------DKPQLQGIPVLVLGNKR 114

Query: 544 DLKPYTMAVQDSARVTQELGIE---PPIPVSMKSKD-LNNVFSRII 585
           DL       +   ++      +       +S K KD ++     +I
Sbjct: 115 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTIIDTSSSLE 71
           +++++G+ G GKSSL+     ++   ++               D     + I DT+    
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  V+L Y   ++ T  +L ++             + +      L G+ 
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM------LVGNK 122

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
                 EV      +F    +   +E SA T   V   F    + ++  
Sbjct: 123 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + L+ G    GKS+LL  F +  F    A T G  + V  +   G   K  I     +E
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + +             I VYD +   ++ +    L E+      +   +  +L+ +K 
Sbjct: 68  RFRTL--TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET--YCTRNDIVNMLVGNKI 123

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D +   +   +  +  ++  +   I  S K+ D +   F  ++
Sbjct: 124 DKENREVDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELV 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 6/165 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLE 71
           ++V ++GD G GKSS++     +S    + P    + +     Y + +   +I  ++ LE
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 72  NKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
               L     + + A ++ Y   ++ T S L ++     +     + + +AG K DL   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                 E            I   VE SA   I + ++F    + +
Sbjct: 125 REVM--ERDAKDYADSIHAI--FVETSAKNAININELFIEISRRI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +  L G    GKS+++  F+E  F  N  PT G  +    V       K LI      E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + +             I VYD + E ++   K  + E+ + G      V  +     D
Sbjct: 65  RFRAL--APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCD 120

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
                 +  +D+      +     +  S K+   +N +F  I 
Sbjct: 121 LTDVREVMERDAKDYADSIHA-IFVETSAKNAININELFIEIS 162

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 6/160 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G  N GK+ L   F    F +    T G  +    VD  G   K  +     +
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  +K    +    +    +FVYD ++  S+      + E  +        +P +L+ +K
Sbjct: 62  ERFRK-SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ--HLLANDIPRILVGNK 118

Query: 543 DDLKPYTMAVQDSA-RVTQELGIEPPIPVSMKSKDLN-NV 580
            DL+       D A +      + P    S K+ + N +V
Sbjct: 119 CDLRSAIQVPTDLAQKFADTHSM-PLFETSAKNPNDNDHV 157

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 15/166 (9%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL-PPDFYPDRVPVTIIDTSSSLEN 72
           +++V+GD   GK+ L         P++                        +  ++  E 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 73  KGKLNEEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRG 129
             K   +   +   AVV  Y     ++   L ++     + L    +P I+ G K DLR 
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 130 DHNATSLEEVMGPIMQQFREIETC--VECSATTM---IQVPDVFYY 170
                +         Q+F +  +    E SA        V  +F  
Sbjct: 124 AIQVPTDL------AQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 17/177 (9%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPP------------VHAPTRLPPDFYPDRVP 60
           ++++ +GD G GK++ +          K                +A           +V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 61  VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPII 119
           + + DT+     +       + A   +L +    Q +   + ++          +   I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
           + G K       +   + E     +     I    E SA T   V          ++
Sbjct: 126 LIGNK---ADLPDQREVNERQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIM 178

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 13/173 (7%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           + + L  G    GK+  L  + +  F+  +  T G  +    V            +    
Sbjct: 5   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64

Query: 483 EGVKKILSNKEALAS--------CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV 534
                  + +E   S            + ++D + + S+   +  + ++           
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA--NAYCENP 122

Query: 535 PCLLIASKDDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKSKD-LNNVFSRII 585
             +LI +K DL       +  AR +  + GI P    S  +   +      ++
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGI-PYFETSAATGQNVEKAVETLL 174

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++VVVGD G GKS+L      +       P    + L      ++  +  +  ++  E  
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDH 131
             + E+  R  D  ++ Y+   +++   +  +    LR  +    P+I+   K+DL    
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSA-TTMIQVPDVFYYAQKAVL 176
                  V     ++         +E SA    + V   F+   + + 
Sbjct: 126 K------VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F ++ F  +Y PT  + Y  +           ++     EE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                        + D  + VY  +D+ S++        + R         P +L+A+K 
Sbjct: 65  FSAMREQYMR---TGDGFLIVYSVTDKASFEHVDRFHQLILR--VKDRESFPMILVANKV 119

Query: 544 DLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKDLN--NVFSRII 585
           DL     +       +  +  I P I  S K   LN    F  ++
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLV 163

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           V++ + G  G GKS+L+    T+    +  P    T        D V    I  ++  E+
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 73  KGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
             +    ++  +  VL Y   ++ S    L    + +  +    V +I+ G K DL    
Sbjct: 63  TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 122

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATT-MIQVPDVFYYAQKAVL 176
             ++ E       +   E+     ECSA T    + ++FY   + V 
Sbjct: 123 QVSTEE-----GEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 10/165 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +  +FG    GKSAL+  FL + F   Y PT    Y      Q   + + + ++ +   
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY----RHQATIDDEVVSMEILDTA 58

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
           G +  +  +  +   +  + VYD +D  S++      ++           V  +L+ +K 
Sbjct: 59  GQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLP--LKNILDEIKKPKNVTLILVGNKA 116

Query: 544 DLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKDLN--NVFSRII 585
           DL     ++ ++  ++  EL        S  + + N   +F  + 
Sbjct: 117 DLDHSRQVSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELC 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G    GK++++     E V    P +    +           + I D       
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK---TLEHRGFKLNIWDVGGQKSL 59

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH 131
           +       +  D ++       +  +          L    +    +++   K DL G  
Sbjct: 60  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 119

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
           +  +++E +     +         CSA T   +    
Sbjct: 120 SCNAIQEALELDSIRSHHWR-IQGCSAVTGEDLLPGI 155

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 15/167 (8%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G  NAGK+ +L  F           T       N+        K  I     ++
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            ++     +    S D  I+V DS+D    +  +  L  +      +G     L+ A+K 
Sbjct: 58  SLRSY--WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA--TLLIFANKQ 113

Query: 544 DLKPYTMAVQDSARVTQELGIEPP----IPVSMKSKD-LNNVFSRII 585
           DL P  ++        +   I          S  + + L      ++
Sbjct: 114 DL-PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G  G GK++++       V   +P +              +   + D       
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG---FNVETVTYKNLKFQVWDLGGLTSI 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131
           +          DAV+       +  +    S  +  L   E++   ++V   K D+    
Sbjct: 63  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
            ++ +   +G    + R+ +   + SAT    + +  
Sbjct: 123 TSSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAM 158

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 13/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G   AGK+ +L              TT      NV      N K  +       
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            ++     +   ++ D  I+V DS D      +K  LV +    E     +   + A+K 
Sbjct: 61  SIRPY--WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV--VFANKQ 116

Query: 544 DLKPYTMAVQDSARVTQELGIE---PPIPVSMKSKD-LNNVFSRII 585
           D++    + + +  +      +        S      L+     ++
Sbjct: 117 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 7e-07
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
           R V   L  G  ++GK+ L    L   + +    +  +  A+  V+       +L L ++
Sbjct: 1   RAV---LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNN--RGNSLTLIDL 54

Query: 481 PEEGVKKILSNKEALASCDVTIFVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           P     +        +S    +FV DS+  +   K   E L +V             L+ 
Sbjct: 55  PGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114

Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNV 580
            +K D+       + +  + Q+L  E       +S   + +
Sbjct: 115 CNKQDI----AMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 151

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 16/131 (12%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           V+ VG   +GK+ L     T    +    +   +      +   + + +  +    SL  
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK---VPIIVAGCKLDLRG 129
           +     +      V +  +   Q  +  ++ +    L           +++A  K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 130 DHNATSLEEVM 140
             +A  +++ +
Sbjct: 123 AKSAKLIQQQL 133

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTII--DTSSSL 70
           +++VVVG+   GKSS+I         +          L      +   V ++  DT+   
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           E         + A A VL ++   + +   +SS+    +  +   +P  +   K+DL  D
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 121

Query: 131 HNATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYY-AQKAV 175
                            + ++      S    + V +VF Y A+K +
Sbjct: 122 SCIK-----NEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GKS+++  + +  F+++Y  T G  +    +       + + L      G
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND---EDVRLMLWDTAG 60

Query: 485 VKKI-LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            ++     K         + V+ ++D  S++       +V     D       L+    D
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT---ALVQNKID 117

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            L    +  +++  + + L +      S+K    ++ VF  + 
Sbjct: 118 LLDDSCIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLA 159

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +++ +G    GK++L+     + +    P  H  +    +     +  T  D    ++ +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQAR 58

Query: 74  GKLNEELKRADAVVLTYAC-NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
               +     + +V      + +                    VP ++ G K+D     +
Sbjct: 59  RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 118

Query: 133 ATSLEEVMGPIMQQFREIE------TCVECSATTMIQVPDVF 168
              L   +G +     +            CS        + F
Sbjct: 119 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 25/178 (14%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + L  G  NAGK+ LL+       +    PT         +         L         
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHI----- 55

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
            +     K+     +  +F+ D++D   +   +  L  +  + E         +I     
Sbjct: 56  -QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV---PFVILGNKI 111

Query: 545 LKPYTMAVQDSARVTQELGIEPP-----------IPVSMKSKD-LNNVFSRIIWAAEH 590
             P  ++  +       L                   S+  ++     F    W +++
Sbjct: 112 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ---WLSQY 166

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 8e-06
 Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 11/167 (6%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAA----AATESVPEKVPPVHAPTRLPPDFYPDRVPVTII 64
             + + V V G+ G+GKSS I         E    K   V       P  +P+   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 65  DTSSSLENKGKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
           D           +  L++    +          +   + +       +  ++ +   +  
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI--DIAKAISMMKKEFYFVRT 170

Query: 122 GCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
               D+  + +          ++Q  R    CV       I  P +F
Sbjct: 171 KVDSDITNEADGEPQTFDKEKVLQDIRLN--CVNTFRENGIAEPPIF 215

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL-ERPFSENYAPTTGEQYAVNVVDQPG 469
           ++    ++ + +V    + G   +GKS+ +N+        E  A T   +  +       
Sbjct: 44  AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 103

Query: 470 GNKKTLILQEIPEEGVKKILSNKEALASC--DVTIFVYDSSDEYSWKRTKELLVEVARLG 527
            N   ++  ++P  G          L         F    S     K   ++   ++   
Sbjct: 104 PNIPNVVFWDLPGIGSTNF-PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM-- 160

Query: 528 EDSGYGVPCLLIASKDD 544
                      + +K D
Sbjct: 161 ----MKKEFYFVRTKVD 173

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 8e-06
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 3/163 (1%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +V+++G  G GKS+L           +                +   + + D       +
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133
                 +   DA V+ Y+   + +  + S   +   R  +     I+             
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122

Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
            S++E  G       + +  +E SA     V  +F    + + 
Sbjct: 123 VSVDE--GRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIR 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           V++ LL G    GKSAL   F         A   G  Y
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY 37

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 9/168 (5%)

Query: 14  RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           RVV++G++G GKS+L    A   +S+      +   T              I+      +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 72  NKGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
            + +   +             +     S              R    +PII+ G K DL 
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                +  E     ++   +     +E SA     V ++F    + V 
Sbjct: 125 RCREVSVSEGRACAVVFDCK----FIETSAAVQHNVKELFEGIVRQVR 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 5/164 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           +R +L G Q  GKS L N F     S +       +          G   T+IL ++ E 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA-SK 542
             +    +   +   D  + VY  +D  S+++  EL +++ R        +P +L+    
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR--ARQTEDIPIILVGNKS 121

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D ++   ++V +             I  S   +  +  +F  I+
Sbjct: 122 DLVRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIV 164

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 10/162 (6%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
             ++ GPQN+GK++LL        +++  PT   Q  ++  D  G     +      +  
Sbjct: 5   SIIIAGPQNSGKTSLLTLLT----TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60

Query: 485 VKKILSNKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSG-YGVPCLLIASK 542
            K     K         IF+ DS+ D      T E LV++  + E S   G+  L+  +K
Sbjct: 61  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRI 584
            +L       +  +++   L  E    +  + K LN V  +I
Sbjct: 121 SEL----FTARPPSKIKDALESEIQKVIERRKKSLNEVERKI 158

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
            +++ G + +GK+SL+    T+SV   V      +    D     +           +  
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLS 64

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLR 128
             L    K    ++              ++ +L ++  +     E  + I++A  K +L 
Sbjct: 65  DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 124

Query: 129 GDHNATSLEEVMGPIMQQFREI 150
                + +++ +   +Q+  E 
Sbjct: 125 TARPPSKIKDALESEIQKVIER 146

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 17/169 (10%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH--APTRLPPDFYPDRVPVTIIDTSSSL 70
            ++V +G    GK++L+     + + + VP +H  +              +     +  +
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
                              +    +S     S      +      VPI++ G K+D    
Sbjct: 74  WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA----NVPILILGNKIDRPEA 129

Query: 131 HNATSLEEVMGPIMQQFREIE-----------TCVECSATTMIQVPDVF 168
            +   L E+ G   Q   +                 CS        + F
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 10/143 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + +  G  NAGK+ LL+   +    ++          + +              +    
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                   K  L + +  +F+ D +D      +KE L  +      +   VP L++ +K 
Sbjct: 74  -------WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKI 124

Query: 544 DLKPYTMAVQDSARVTQELGIEP 566
           D  P  ++ +    +    G   
Sbjct: 125 DR-PEAISEERLREMFGLYGQTT 146

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 6/167 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +  + G ++ GKS+L   F+E  F ++Y PT    +   +      N +   LQ +   
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV----NGQEYHLQLVDTA 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
           G  +     +  +       +  S          +++                L+   KD
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
                 ++ ++   + +       +  S K      +VF RII  AE
Sbjct: 121 LHMERVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAE 166

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 10/163 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            ++ ++G R  GKSSL          +   P +                + ++DT+   E
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGD 130
                       +  +L Y+     +   +       L    ++++PI++ G K DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124

Query: 131 HNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYA 171
              +  E       +   E      +E SA       DVF   
Sbjct: 125 RVISYEE------GKALAESWNAAFLESSAKENQTAVDVFRRI 161

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 22/175 (12%)

Query: 393 YVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSE-- 450
           + G      A    T+   +    +Q + N    L+ G    GKS+ +NS +        
Sbjct: 4   WSGINTFAPAT--QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSIS 61

Query: 451 NYAPTTGE--QYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY--- 505
            +          + +          T  L E        +   K  L    + + +Y   
Sbjct: 62  PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDR 121

Query: 506 ------DSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
                 D+ D+   K   +        G+        + +       P  +   +
Sbjct: 122 LDAYRVDNLDKLVAKAITDS------FGKGIWNKA-IVALTHAQFSPPDGLPYDE 169

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 16/178 (8%)

Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKT------LILQEIP 481
           + G  N GKS LLN  L +  S         ++ +  +   G  +        L ++E  
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
                   +   ++   ++ IFV + +             E+       G     L +  
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPD-------DEMVLNKLREGKAPVILAVNK 122

Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII-WAAEHPHLNIPE 597
            D+++     +     +  ++     +P+S ++   ++ + + +     E  H   PE
Sbjct: 123 VDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHH-FPE 179

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 15/167 (8%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLER-----------PFSENYAPTTGEQYAVNVVDQPG 469
            +  +  + G  N GKS L N+ L +                      +      VD  G
Sbjct: 6   TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65

Query: 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED 529
             +K+ +     E+         +++   DV + V D++   + +  +     +      
Sbjct: 66  LRRKSRVEPRTVEKYSNYR--VVDSIEKADVVVIVLDATQGITRQDQRMA--GLMERRGR 121

Query: 530 SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
           +   V           K Y    +        +   P I  S     
Sbjct: 122 ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW 168

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 20/188 (10%)

Query: 14  RVVVVGDRGTGKSSLIAA-AATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT------ 66
            V +VG    GKS+L++  ++ +              L      D     + D       
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62

Query: 67  SSSLENKG-KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRR-----LEIKVPIIV 120
           +      G +    ++R   +V     +          Y               + P I+
Sbjct: 63  AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 121 AGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV-LHPT 179
              K+D+          E +    ++  +       SA T   + ++ +     +   P 
Sbjct: 123 VANKMDMPEA------AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 176

Query: 180 APLFDHDE 187
            PL+D +E
Sbjct: 177 FPLYDEEE 184

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 24/137 (17%), Positives = 36/137 (26%), Gaps = 20/137 (14%)

Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
           Q  R   R LL G   +GKS ++          +   T+G    +               
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQM----RILHVVLTSG----IFETKFQVDKVN---F 49

Query: 478 QEIPEEGVKKILS-NKEALASCDVTIFVYDSSDEYSW-------KRTKELLVEVAR-LGE 528
                 G +       +        IFV  SS             R +E L         
Sbjct: 50  HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 109

Query: 529 DSGYGVPCLLIASKDDL 545
                +  +L  +K DL
Sbjct: 110 RWLRTISVILFLNKQDL 126

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 23/192 (11%), Positives = 46/192 (23%), Gaps = 25/192 (13%)

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQ----PAEIVGV 238
           FD+         +   K +F   D + +G ++  E+           L      A+    
Sbjct: 5   FDNPRW------IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKD 58

Query: 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPV 298
                         +      ++            +      +       +     F  V
Sbjct: 59  AVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKY----AKNEPTLIRIWGDALFDIV 114

Query: 299 PTKLSPDQSVELASE---------AVEFLRGIFGLYDIDNDGAVRPAELEDLFLT--APE 347
               +   +++             + E     F + DID  G +   E+    L      
Sbjct: 115 DKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTM 174

Query: 348 SPWDEAPYKDAA 359
            P  E  Y  A 
Sbjct: 175 DPACEKLYGGAV 186

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 16/121 (13%), Positives = 28/121 (23%), Gaps = 8/121 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + LL G   +GKS  +          +  PTTG       +         +  Q     
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERR 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRT----KELLVEVARLGEDSGYGVPCLLI 539
                  N  ++              E   +      K L   +  +          +L 
Sbjct: 61  KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI--ITYPWFQNSSVILF 118

Query: 540 A 540
            
Sbjct: 119 L 119

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 21/169 (12%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFS----ENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
           R ++ G  N GKS LLN  L    +                + +         T  ++  
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 481 PEEGVKKILSNK--EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
             + V+++   +  + +   D+ +FV D+S     +  K                     
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-------------LERIKNK 108

Query: 539 IASKDDLKPYTMAVQDSARVTQELGIEPP-IPVSMKSKD-LNNVFSRII 585
                  K   +   +   +  +LG +   + +S    + L  +   I 
Sbjct: 109 RYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIY 157

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 9/126 (7%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           + + LL G   +GKS  L             PT G       +         +  Q    
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58

Query: 483 EGVKKILSNKEAL----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
           +   +   +  ++    +S +    + +         +  +   +  +       V  +L
Sbjct: 59  KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI--VNNRVFSNVSIIL 116

Query: 539 IASKDD 544
             +K D
Sbjct: 117 FLNKTD 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	670
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.95
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.94
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.94
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.93
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.93
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.93
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.92
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.92
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.92
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.92
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.89
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.88
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.88
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.87
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.87
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.83
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.83
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.83
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.81
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.8
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.8
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.79
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.78
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.78
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.77
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.77
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.76
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.76
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.75
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.75
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.75
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.75
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.74
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.74
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.74
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.71
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.71
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.69
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.69
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.69
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.68
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.67
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.67
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.66
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.65
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.65
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.64
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.64
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.64
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.63
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.63
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.62
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.6
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.59
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.57
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.56
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.56
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.54
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.53
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.5
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.46
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.45
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.41
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.37
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.37
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.35
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.35
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.33
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.28
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.22
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.19
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.19
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.18
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.17
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.17
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.16
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.09
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.07
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.02
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.94
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.92
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.88
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.86
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.82
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.74
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.73
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.72
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.7
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.64
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.63
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.6
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.56
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.51
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.46
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.44
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.44
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.03
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.69
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.4
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.33
d1okkd2	207	GTPase domain of the signal recognition particle r	97.29
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.25
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.19
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.17
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.15
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	97.03
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.01
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.99
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.84
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	96.65
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.6
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.56
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.52
d1okkd2	207	GTPase domain of the signal recognition particle r	96.49
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.36
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.36
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	96.31
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.29
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.14
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	96.12
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.98
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.87
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	95.77
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.77
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.76
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.72
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.72
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	95.67
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.58
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.57
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.56
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.52
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.52
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.45
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.37
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.36
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.35
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.31
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.3
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.29
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.25
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.23
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	95.2
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	95.11
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.1
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.09
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.06
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.04
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.04
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.01
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	94.96
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	94.96
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.93
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.92
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.91
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.86
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.7
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.67
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.64
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.61
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.6
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	94.59
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	94.59
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	94.59
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.54
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	94.44
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.43
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.35
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.35
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.32
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.26
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.23
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.2
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.2
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	94.15
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.03
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.96
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.96
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.94
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.93
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	93.92
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.92
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.91
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.9
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.87
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.85
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.82
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.78
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.77
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.75
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.75
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.68
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	93.67
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.67
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.65
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.63
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.63
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.61
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	93.61
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	93.6
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.58
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.55
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.55
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.54
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.53
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.49
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.48
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.46
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.39
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.38
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.35
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.33
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.27
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.26
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.23
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.2
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.18
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.16
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.11
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.06
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	93.04
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.03
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.99
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	92.98
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	92.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.93
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.89
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.84
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.84
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	92.79
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.78
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.73
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.64
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.63
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.62
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.56
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.52
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.47
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.44
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.43
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.42
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	92.36
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.35
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.32
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.29
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.26
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.25
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.24
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.18
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.17
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	92.16
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.15
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.03
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.96
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.92
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.91
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	91.9
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.79
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	91.72
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.71
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	91.71
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.67
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.58
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.56
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	91.54
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.51
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.42
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	91.4
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.37
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.36
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.35
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	91.29
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.27
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	91.23
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	91.18
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.17
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	91.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	91.15
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	90.99
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	90.98
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	90.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.86
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	90.82
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	90.65
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.63
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	90.59
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	90.54
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	90.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	90.43
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.36
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	90.33
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	90.25
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.23
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	90.13
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	90.06
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	89.96
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	89.95
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.9
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	89.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	89.81
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	89.59
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.58
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	89.49
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	89.42
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	89.41
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	89.39
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.36
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	89.33
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	89.25
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	89.15
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	88.96
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.96
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	88.91
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	88.82
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	88.79
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	88.67
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	88.49
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	88.44
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	88.38
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	88.17
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	88.07
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	88.03
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	88.0
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	87.93
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	87.85
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	87.84
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	87.74
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	87.69
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	87.67
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.66
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	87.62
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	87.53
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	87.45
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	87.41
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	87.28
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	87.27
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.21
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	87.13
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	87.05
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	86.82
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	86.58
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	86.52
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.52
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	86.44
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	86.2
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	86.11
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	86.09
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	86.04
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	86.0
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.98
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	85.92
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.88
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	85.85
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.82
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	85.81
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	85.7
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	85.62
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	85.55
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	85.25
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	85.24
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	85.16
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	85.14
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	85.04
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	85.01
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	84.97
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	84.95
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	84.75
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	84.56
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	84.39
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	84.34
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	84.33
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	84.2
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	84.18
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	84.15
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	84.12
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	84.07
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.96
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	83.86
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	83.84
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	83.75
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	83.74
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	83.66
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	83.63
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	83.5
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	83.41
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	83.14
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	83.02
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	82.88
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	82.74
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	82.73
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	82.56
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	82.56
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	82.3
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	82.03
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	81.94
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	81.86
d1tuea_	205	Replication protein E1 helicase domain {Human papi	81.82
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	81.79
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.72

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=233.57  Aligned_cols=170  Identities=23%  Similarity=0.347  Sum_probs=143.2

Q ss_pred             CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (670)
Q Consensus         6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (670)
                      +.+....+||+|+|++|||||||++||+++.|...+.++.. .........+..+.+.+|||+|++.+...+..+++++|
T Consensus         3 ~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           3 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             SCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccc
Confidence            34577889999999999999999999999998888544443 33344455567789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCe
Q 005908           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIET  152 (670)
Q Consensus        85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~  152 (670)
                      ++++|||+++++||+++..+|...++...++.|+++||||+|+.+.            +.+  ..+....++++++. ..
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v--~~~~~~~~a~~~~~-~~  159 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI--CVEQGQKLAKEIGA-CC  159 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC--CHHHHHHHHHHHTC-SC
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccc--cHHHHHHHHHHcCC-CE
Confidence            9999999999999999887888888888889999999999998752            233  33445778888874 37


Q ss_pred             EEEeCcccCCCchHHHHHHHHHHcCC
Q 005908          153 CVECSATTMIQVPDVFYYAQKAVLHP  178 (670)
Q Consensus       153 ~~~~SA~~~~gi~~l~~~i~~~~~~~  178 (670)
                      |+||||++|.||+++|+.++++++.|
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHcCC
Confidence            99999999999999999999988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=226.21  Aligned_cols=170  Identities=25%  Similarity=0.343  Sum_probs=141.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      .++.+||+|+|++|||||||+++|+++.|...+.++..... .....+...+++.+||++|++.+...+..+++.+|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46789999999999999999999999998888554444333 44556677889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      +|||++++.||+++..+|...++....++|++||+||+|+..++..          .........++++++. .+|+|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~E~S  160 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCC-ceEEEcC
Confidence            9999999999999987788888888889999999999998654211          0122344566677764 4899999


Q ss_pred             cccCCCchHHHHHHHHHHcCCC
Q 005908          158 ATTMIQVPDVFYYAQKAVLHPT  179 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~~~~  179 (670)
                      |++|.||+++|+.+++.++.|.
T Consensus       161 Ak~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCCC
Confidence            9999999999999999998763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=224.85  Aligned_cols=164  Identities=24%  Similarity=0.377  Sum_probs=137.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +.||+|+|++|||||||+++|+++.|...+.++.+... .........+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999887554443332 44455667889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      |+++++||+++...|.+.++...+++|++|||||+|+...+..          ....+....++++++. .+|+||||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCC-cEEEEecCCC
Confidence            9999999999988888888888889999999999999754210          0133456778888764 3799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 005908          161 MIQVPDVFYYAQKAVL  176 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (670)
                      |.||+++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=8.9e-28  Score=222.51  Aligned_cols=160  Identities=19%  Similarity=0.259  Sum_probs=136.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+++|++|||||||+++|+++.|.....++.+...  .........+.+.+|||+|++++......+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999998877544443322  3444555678899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ||++++.+++.+. .|++.+.+..+++|++|||||+|+.+++.+  ..+.++.++++++.  ++++|||++|.||+++|+
T Consensus        82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~~v~e~f~  156 (164)
T d1z2aa1          82 FSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLKL--RFYRTSVKEDLNVSEVFK  156 (164)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECBTTTTBSSHHHHH
T ss_pred             Eeccchhhhhhcc-cccccccccCCCceEEEeeccCCcccceee--eehhhHHHHHHcCC--EEEEeccCCCcCHHHHHH
Confidence            9999999999987 599999887779999999999999877766  34456778888873  799999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      .+++.++
T Consensus       157 ~l~~~~l  163 (164)
T d1z2aa1         157 YLAEKHL  163 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=222.31  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +||+++|++|||||||+++|.+..+....++..........+++..+.+.+|||+|++.+..++..+++++|++|+|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            79999999999999999999998876655544444444455667789999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908           93 NQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      +++.+++.+.. |...+...  ..++|+++||||+|+.+.+.+  .....+.+++.++.  ++++|||++|.||+++|+.
T Consensus        82 t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          82 TDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFDC--KFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTS--EEEECBTTTTBSHHHHHHH
T ss_pred             ccccccccccc-ccchhhcccccccceEEEeecccchhhhcch--hHHHHHHHHHhcCC--EEEEEeCCCCcCHHHHHHH
Confidence            99999999985 88887654  346899999999999877666  34456778888873  7999999999999999999


Q ss_pred             HHHHHc
Q 005908          171 AQKAVL  176 (670)
Q Consensus       171 i~~~~~  176 (670)
                      +++.+.
T Consensus       157 l~~~i~  162 (168)
T d2gjsa1         157 VVRQIR  162 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-27  Score=220.57  Aligned_cols=163  Identities=24%  Similarity=0.313  Sum_probs=137.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ++++||+++|++|||||||++||+.++|...+.++.+. ...........+.+.+||++|++.+...++.+++++|++|+
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            57899999999999999999999999998885554443 33455667778999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-c-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRR-L-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~-~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.||+++.. |+..+.+ . .+++|++|||||+|+.....+  ..+....+++++... ++++|||++|.||++
T Consensus        81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e  156 (167)
T d1c1ya_          81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCNC-AFLESSAKSKINVNE  156 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTSC-EEEECBTTTTBSHHH
T ss_pred             eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCccccccc--chhHHHHHHHHhCCC-EEEEEcCCCCcCHHH
Confidence            999999999999986 6666644 2 458999999999999877665  345556777776543 799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+.+++.+.
T Consensus       157 ~F~~l~~~i~  166 (167)
T d1c1ya_         157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=222.80  Aligned_cols=165  Identities=18%  Similarity=0.241  Sum_probs=138.4

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      +..+.+||+|+|++|||||||+++|+++.|....+++..... ....+++..+.+.+|||+|++++...+..+++++|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            355679999999999999999999999999888655443332 4455566678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |+|||++++.|++.+.. |...+.+.  ..+.|++|||||+|+...+.+  ..+....++++++  .++++|||++|.||
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sak~g~gv  156 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHH--VAYFEASAKLRLNV  156 (173)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSH
T ss_pred             eeecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhcccc--chhhhhHHHHhcC--CEEEEEeCCCCcCH
Confidence            99999999999999985 77776442  458999999999999876655  3455678888876  37999999999999


Q ss_pred             hHHHHHHHHHHcC
Q 005908          165 PDVFYYAQKAVLH  177 (670)
Q Consensus       165 ~~l~~~i~~~~~~  177 (670)
                      +++|+.+++.+..
T Consensus       157 ~e~f~~l~~~i~k  169 (173)
T d2fn4a1         157 DEAFEQLVRAVRK  169 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=225.47  Aligned_cols=169  Identities=23%  Similarity=0.388  Sum_probs=142.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      |+.+||+++|++|||||||++||+++.|..++.++.+... ......+..+.+.+|||+|++++...+..+++++|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            3569999999999999999999999998887544444333 444555667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (670)
                      |||+++++||+++.++|...+....++.|+++|+||+|+.+.            +.+  ..+....++++++.. +|+||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~e~  157 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI--TPETAEKLARDLKAV-KYVEC  157 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHTTCS-CEEEC
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccc--cHHHHHHHHHHcCCC-eEEEE
Confidence            999999999999988888888888789999999999998643            222  345567788887643 69999


Q ss_pred             CcccCCCchHHHHHHHHHHcCCCCC
Q 005908          157 SATTMIQVPDVFYYAQKAVLHPTAP  181 (670)
Q Consensus       157 SA~~~~gi~~l~~~i~~~~~~~~~~  181 (670)
                      ||++|.||+++|+.+++.++.+..+
T Consensus       158 SAk~~~~V~e~f~~l~~~~~~~~~~  182 (191)
T d2ngra_         158 SALTQKGLKNVFDEAILAALEPPEP  182 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHHHTSCCST
T ss_pred             eCCCCcCHHHHHHHHHHHHhcCcCC
Confidence            9999999999999999998876554

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.1e-27  Score=218.80  Aligned_cols=160  Identities=16%  Similarity=0.286  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|+++.+...+.+|.+.+.........+....+.+||++|++++..+  ...+++.+|+++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~i   79 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQACV   79 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--CHHHHTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhh--hhhhhccCceEE
Confidence            389999999999999999999999998888899887777777777767778899999999988887  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.||+.+..|+.++.+...    ++|+++|+||+|+.+++. ..+++++++++++++ ++++||++| ||+++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1          80 LVFSTTDRESFEAISSWREKVVAEVG----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEV  154 (164)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHC----SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSHHH
T ss_pred             EEEeccchhhhhhcccccccccccCC----CceEEEeeccCCcccceeeeehhhHHHHHHcCCE-EEEeccCCCcCHHHH
Confidence            99999999999999999999987765    699999999999976544 377889999999985 999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |+.|++.+.
T Consensus       155 f~~l~~~~l  163 (164)
T d1z2aa1         155 FKYLAEKHL  163 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=220.39  Aligned_cols=162  Identities=22%  Similarity=0.289  Sum_probs=136.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ++++||+++|++|||||||++||+++.|.....++.+.. ......+...+.+.+||++|++.+......+++++|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            578999999999999999999999999888855544433 3445566667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.+++++.. |...+...  .+++|++|||||+|+...+.+  ..+....+++.++.  ++++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWGC--PFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--CEEEECTTCHHHHHH
T ss_pred             eeeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccc--hHHHHHHHHHHcCC--eEEEECCCCCcCHHH
Confidence            999999999999985 77776543  357999999999999877666  33456777777763  799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+.+++.+.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.7e-27  Score=218.60  Aligned_cols=162  Identities=17%  Similarity=0.244  Sum_probs=137.5

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .+.+||+++|++|||||||+++|+++.|.....++... .......+...+.+.+||++|++.+......+++++|++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            46799999999999999999999999988775444433 33445566778999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC-Cch
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVP  165 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~-gi~  165 (670)
                      |||++++.||+.+.. |+..+.+.  ..++|+|+||||+|+...+.+ + .+.+..+++.++.  +|++|||++|. ||+
T Consensus        82 v~d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v-~-~e~~~~~~~~~~~--~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          82 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKV-T-RDQGKEMATKYNI--PYIETSAKDPPLNVD  156 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCS-C-HHHHHHHHHHHTC--CEEEEBCSSSCBSHH
T ss_pred             ecccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhcee-e-hhhHHHHHHHcCC--EEEEEcCCCCCcCHH
Confidence            999999999999985 88877543  347999999999999988776 3 4556888888873  79999999875 999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+.+++.++
T Consensus       157 ~~F~~l~~~i~  167 (169)
T d1x1ra1         157 KTFHDLVRVIR  167 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.5e-27  Score=218.41  Aligned_cols=162  Identities=21%  Similarity=0.312  Sum_probs=136.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ++++||+|+|++|||||||++||++++|...+.++.....  ...........+.+|||+|++++......+++.+|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            5789999999999999999999999999888655554444  22333345677889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|||++++++|+.+.. |...+.. ..++.|+++||||+|+.+.+.+  ..+..+.++++++.  +|++|||++|.||++
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          82 IVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIHA--IFVETSAKNAININE  156 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred             EEeeechhhhhhhHHH-hhhhhhhccCCcceEEEecccchhccccch--hHHHHHHHHHHcCC--EEEEEecCCCCCHHH
Confidence            9999999999999985 6666654 4568999999999999877666  44566788888873  799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|..+++.+.
T Consensus       157 ~f~~l~~~i~  166 (167)
T d1z0ja1         157 LFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.94  E-value=4.9e-27  Score=218.25  Aligned_cols=161  Identities=20%  Similarity=0.308  Sum_probs=134.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +-+||+|+|++|||||||+++|++++|...+.++.+. ......++...+.+.+||++|++++..+...+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            5689999999999999999999999988875444433 334455667788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      ||++++.+++.+.. |++.+.+.  .+++|+++||||+|+...+.+  ..+..+.+++.++  .++++|||++|.||+++
T Consensus        83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~gv~e~  157 (168)
T d1u8za_          83 FSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWN--VNYVETSAKTRANVDKV  157 (168)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTHHHH
T ss_pred             eeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEeccccccccccc--cHHHHHHHHHHcC--CeEEEEcCCCCcCHHHH
Confidence            99999999999984 88887653  458999999999999877666  3455678888887  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+.+++.+.
T Consensus       158 f~~l~~~i~  166 (168)
T d1u8za_         158 FFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.7e-27  Score=216.54  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+|+|++|||||||++||+++++...+.++.+...  .....++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999998887555444333  33444556789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      |++++.+++.+.. |+..+.. ..++.|++|||||+|+.+.+.+  ..+....+++.++.  ++++|||++|.||+++|+
T Consensus        81 d~~~~~s~~~i~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~SAk~g~~v~e~f~  155 (164)
T d1yzqa1          81 DITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNV--MFIETSAKAGYNVKQLFR  155 (164)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHHHH
T ss_pred             ccccccchhhhHh-hHHHHHHhcCCCceEEEEecccchhhhhhh--hHHHHHHHHHHcCC--EEEEecCCCCcCHHHHHH
Confidence            9999999999986 6665554 4568999999999999876665  34456778888763  799999999999999999


Q ss_pred             HHHHHHc
Q 005908          170 YAQKAVL  176 (670)
Q Consensus       170 ~i~~~~~  176 (670)
                      .|++++.
T Consensus       156 ~i~~~l~  162 (164)
T d1yzqa1         156 RVAAALP  162 (164)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhhC
Confidence            9998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.1e-27  Score=217.07  Aligned_cols=161  Identities=15%  Similarity=0.211  Sum_probs=133.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      -+||+++|++|||||||+++|++++|.....++.+...  .........+++.+|||||++++..+++.+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999998877555444333  3344445578899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||+++++++..+.. |...++. ..++.|+++|+||+|+.+.+.+  ..+....+++..+.  ++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~gv~e~f  159 (169)
T d3raba_          85 YDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLGF--EFFEASAKDNINVKQTF  159 (169)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHCCSCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHHHHH
T ss_pred             EECccchhhhhhhh-hhhhhhcccCCcceEEEEEeeccccccccc--chhhhHHHHHHcCC--EEEEecCCCCcCHHHHH
Confidence            99999999999885 5555544 4568999999999999877665  33456778888763  79999999999999999


Q ss_pred             HHHHHHHcC
Q 005908          169 YYAQKAVLH  177 (670)
Q Consensus       169 ~~i~~~~~~  177 (670)
                      +.+++.+..
T Consensus       160 ~~l~~~i~e  168 (169)
T d3raba_         160 ERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999988754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9e-27  Score=216.09  Aligned_cols=159  Identities=23%  Similarity=0.301  Sum_probs=133.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      -+||+|+|++|||||||+++|+++++....+++.....  ....++...+.+.+|||+|++.+...+..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999998887554343333  3445556678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||+++.+|++.+.. |...+++ ..+..|+++||||+|+.....+  ..+....+++..+.  ++++|||++|.||+++|
T Consensus        84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Saktg~~v~e~f  158 (166)
T d1z0fa1          84 YDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENGL--LFLEASAKTGENVEDAF  158 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHHH
T ss_pred             eccCchHHHHHHHH-HHHHHHhhccccceEEEEcccccchhhccc--HHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHH
Confidence            99999999999885 6666654 4568999999999999776655  34556778888763  79999999999999999


Q ss_pred             HHHHHHH
Q 005908          169 YYAQKAV  175 (670)
Q Consensus       169 ~~i~~~~  175 (670)
                      +.|++.+
T Consensus       159 ~~i~~~i  165 (166)
T d1z0fa1         159 LEAAKKI  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.6e-27  Score=218.65  Aligned_cols=161  Identities=20%  Similarity=0.243  Sum_probs=133.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .++||+++|++|||||||+++|+++.|...+.++.+.. ......+...+.+.+|||+|++.+......+++.+|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            36899999999999999999999999887754444433 34445556678899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh---cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      ||++++++++.+.. |+..+.+   ...++|++|||||+|+...+.+ . .+.++.+++.++  .++++|||++|.||++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v-~-~~e~~~~~~~~~--~~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          81 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV-Q-SSEAEALARTWK--CAFMETSAKLNHNVKE  155 (171)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS-C-HHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred             eecccccchhcccc-hhhhhhhhhccCCCCcEEEEeecccccccccc-c-HHHHHHHHHHcC--CeEEEEcCCCCcCHHH
Confidence            99999999999985 7666643   2358999999999999877766 3 455678888887  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 005908          167 VFYYAQKAVL  176 (670)
Q Consensus       167 l~~~i~~~~~  176 (670)
                      +|+.+++.+.
T Consensus       156 ~f~~l~~~~~  165 (171)
T d2erxa1         156 LFQELLNLEK  165 (171)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHH
Confidence            9999997643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-27  Score=217.92  Aligned_cols=161  Identities=18%  Similarity=0.281  Sum_probs=130.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+|+|++|||||||+++|++++|.....++.....  .........+.+.+||++|+.++..++..+++++|++|+|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            58999999999999999999999999888665555444  3445556678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||+++++||+.+.. |+..+.. .....|++|||||+|+..++.+ + .+.++.++++++.  ++++|||++|.||+++|
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v-~-~~e~~~~a~~~~~--~~~e~Sak~~~~v~e~F  157 (167)
T d1z08a1          83 YDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKERHV-S-IQEAESYAESVGA--KHYHTSAKQNKGIEELF  157 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTTC--EEEEEBTTTTBSHHHHH
T ss_pred             EeCCchhHHHhhhh-hhhhcccccccccceeeecccccccccccc-c-hHHHHHHHHHcCC--eEEEEecCCCcCHHHHH
Confidence            99999999999985 6666654 3457899999999999887776 3 4556788888873  79999999999999999


Q ss_pred             HHHHHHHcC
Q 005908          169 YYAQKAVLH  177 (670)
Q Consensus       169 ~~i~~~~~~  177 (670)
                      +.|++.++.
T Consensus       158 ~~l~~~i~~  166 (167)
T d1z08a1         158 LDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999988763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=215.77  Aligned_cols=163  Identities=18%  Similarity=0.317  Sum_probs=140.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|.+|||||||+++|+++.+...+.+|.+.......+...|....+.+||+.|++.+..+  +..+++++|++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   79 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL--GPIYYRDSNGA   79 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceeccc--chhhccCCcee
Confidence            5689999999999999999999999999988899998888888999877889999999999998888  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||+++++||+.+..|+..+......   ..|+++|+||+|+...+ ...+++++++++++++ +++|||++| ||++
T Consensus        80 i~v~d~~~~~Sf~~~~~~~~~~~~~~~~---~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~-~~e~Sak~~~~v~e  155 (167)
T d1z08a1          80 ILVYDITDEDSFQKVKNWVKELRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEE  155 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGG---GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHHH
T ss_pred             EEEEeCCchhHHHhhhhhhhhccccccc---ccceeeeccccccccccccchHHHHHHHHHcCCe-EEEEecCCCcCHHH
Confidence            9999999999999999999887665443   58999999999998654 3488899999999986 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|+.|++.+.+
T Consensus       156 ~F~~l~~~i~~  166 (167)
T d1z08a1         156 LFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=215.84  Aligned_cols=163  Identities=19%  Similarity=0.269  Sum_probs=133.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      +..++||+|+|++|||||||+++|+++.|...+.++.+. ......+++..+.+.+||++|..++......+++.+|+++
T Consensus         2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEE
Confidence            345699999999999999999999999988875444433 3345556667789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      +|||++++.|++.+.. |...+.+.  ..+.|+||||||+|+...+.+  ..+....+++.++.  +|++|||++|.||+
T Consensus        82 lv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~~~~i~  156 (171)
T d2erya1          82 LVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQV--TQEEGQQLARQLKV--TYMEASAKIRMNVD  156 (171)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSS--CHHHHHHHHHHTTC--EEEECBTTTTBSHH
T ss_pred             EeeccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccc--hHHHHHHHHHHcCC--EEEEEcCCCCcCHH
Confidence            9999999999999985 77665432  357999999999999877766  34556788888873  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 005908          166 DVFYYAQKAVL  176 (670)
Q Consensus       166 ~l~~~i~~~~~  176 (670)
                      ++|+.|++.+.
T Consensus       157 e~f~~l~~~i~  167 (171)
T d2erya1         157 QAFHELVRVIR  167 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-27  Score=217.53  Aligned_cols=161  Identities=17%  Similarity=0.195  Sum_probs=135.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .+.+||+|+|++|||||||+++|+++.|...+.++. ........+++..+.+.+|||+|.+.+..+...+++.+|++|+
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            456899999999999999999999999887744433 3334445666778899999999999999888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++++|+.+.. |+..+.+.  .+++|++|||||+|+...+.+ + .+.+..++++++.  +|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v-~-~~~~~~~a~~~~~--~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI-S-YEEGKALAESWNA--AFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHTC--EEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccch-h-HHHHHHHHHHcCC--EEEEEecCCCCCHHH
Confidence            999999999999985 77777543  357999999999999877766 3 3456788888873  799999999999999


Q ss_pred             HHHHHHHHH
Q 005908          167 VFYYAQKAV  175 (670)
Q Consensus       167 l~~~i~~~~  175 (670)
                      +|+.+++.+
T Consensus       157 ~f~~li~~~  165 (167)
T d1xtqa1         157 VFRRIILEA  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.6e-27  Score=217.74  Aligned_cols=160  Identities=19%  Similarity=0.270  Sum_probs=132.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+|+|++|||||||+++|+++.|....+++.+...  ....+....+++.+|||||++++..+++.+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            58999999999999999999999998777544443332  3445556678899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||++++.+++.+.+ |...+. ....+.|++|||||+|+.+...+  ..+.++.+++..+.  ++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v--~~~~~~~~~~~~~~--~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          85 YDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQDM--YYLETSAKESDNVEKLF  159 (171)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--CEEECCTTTCTTHHHHH
T ss_pred             eecccchhhhhhhh-hhhhhcccccccccEEEEEeecccccccch--hhhHHHHHHHhCCC--EEEEEccCCCCCHHHHH
Confidence            99999999999986 666654 44557999999999998876665  33456777887763  79999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      ..+++.++
T Consensus       160 ~~l~~~l~  167 (171)
T d2ew1a1         160 LDLACRLI  167 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.3e-27  Score=216.59  Aligned_cols=162  Identities=19%  Similarity=0.309  Sum_probs=142.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|++|||||||+++|+++.+...+.||.+..+. ..+..+|....+.+||++|.+.+..+  ...+++.+|++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~--~~~~~~~~d~~   79 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIF--PQTYSIDINGY   79 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETTEEEEEEEEECCCCCTTCCC--CGGGTSSCCEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEecCcEEEEeeecccccccccccc--cchhhhhhhhh
Confidence            4589999999999999999999999998888888887654 56777877788889999999888887  77899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.||+.+..|+..+.+.....  ++|+++|+||+|+...+. ..+++++++++++++ +++|||++| ||++
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          80 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAVD  156 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHHHHH
T ss_pred             hhhcccchhhhhhhhhhhhhhhhhccccc--ccceeeeccccccccccchhHHHHHHHHHHcCCE-EEEEecCCCCCHHH
Confidence            99999999999999999999988765544  699999999999976543 477889999999986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.|++.+.
T Consensus       157 ~f~~li~~~~  166 (167)
T d1xtqa1         157 VFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-27  Score=220.93  Aligned_cols=161  Identities=17%  Similarity=0.265  Sum_probs=129.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+||+++|++|||||||+++|+++.|...+.++.+...  .....+...+.+.+|||+|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999998887544443322  4445566789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ||+++++||+.+.. |+..+.+..+++|+++||||+|+......    +....++...+  .++++|||++|.||+++|+
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~piilvgnK~Dl~~~~~~----~~~~~~~~~~~--~~~~e~Sak~~~~v~e~f~  155 (170)
T d1i2ma_          83 FDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISAKSNYNFEKPFL  155 (170)
T ss_dssp             EETTSGGGGTTHHH-HHHHHHHHHCSCCEEEEEECCCCSCSCCT----TTSHHHHSSCS--SEEEEEBTTTTBTTTHHHH
T ss_pred             cccccccccchhHH-HHHHHhhccCCCceeeecchhhhhhhhhh----hHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence            99999999999985 88888776679999999999999765433    22334555554  3799999999999999999


Q ss_pred             HHHHHHcCCC
Q 005908          170 YAQKAVLHPT  179 (670)
Q Consensus       170 ~i~~~~~~~~  179 (670)
                      +|++.++...
T Consensus       156 ~l~~~l~~~~  165 (170)
T d1i2ma_         156 WLARKLIGDP  165 (170)
T ss_dssp             HHHHHHHTCT
T ss_pred             HHHHHHccCC
Confidence            9999887544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=215.98  Aligned_cols=162  Identities=20%  Similarity=0.251  Sum_probs=136.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+++|++|||||||+++|++++|....+++.+...  .........+.+.+|||+|++.+...+..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            468999999999999999999999998888665555544  233344557889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH-HhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l-~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||+++..+++.+.. |...+ +...++.|++|||||+|+...+.+ + .+..+.+++.++  .+|++|||++|.||+++
T Consensus        85 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~-~e~~~~~~~~~~--~~~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_          85 VYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANKRAV-D-FQEAQSYADDNS--LLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHHH
T ss_pred             EeccchhhHHHHHHH-HhhhhhhccCCCceEEeecccccccccccc-c-HHHHHHHHHhcC--CEEEEeeCCCCCCHHHH
Confidence            999999999999986 55555 556678999999999999887766 3 455677888776  37999999999999999


Q ss_pred             HHHHHHHHcC
Q 005908          168 FYYAQKAVLH  177 (670)
Q Consensus       168 ~~~i~~~~~~  177 (670)
                      |+.|++.+..
T Consensus       160 f~~l~~~i~~  169 (170)
T d1r2qa_         160 FMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHHHHhh
Confidence            9999887653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=213.55  Aligned_cols=162  Identities=19%  Similarity=0.362  Sum_probs=145.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+|+|++|||||||+++|+++++...+.++++.++....+..+|....+.+||++|++.+..+  +..+++.+|+
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~d~   79 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG   79 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--HHHHHHTCSE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHH--HHHHhcCCcE
Confidence            35799999999999999999999999999888888888888888888877789999999999998887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||++++.||+.+..|+..+.+....   ..|+++|+||+|+...... .++++.+++.++++ +++|||++| ||+
T Consensus        80 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Saktg~~v~  155 (166)
T d1z0fa1          80 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVE  155 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEeccCchHHHHHHHHHHHHHHhhccc---cceEEEEcccccchhhcccHHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999988776554   5899999999998765444 67899999999985 999999999 999


Q ss_pred             HHHHHHHHHH
Q 005908          579 NVFSRIIWAA  588 (670)
Q Consensus       579 ~l~~~l~~~~  588 (670)
                      ++|+.|++.+
T Consensus       156 e~f~~i~~~i  165 (166)
T d1z0fa1         156 DAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=216.70  Aligned_cols=166  Identities=17%  Similarity=0.321  Sum_probs=144.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ..+.+||+|+|++|||||||+++|+++.+...+.+|..+ .....+.++|....+.+||++|++++..+  +..+++.+|
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~   79 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPARLDILDTAGQEEFGAM--REQYMRAGH   79 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTTTSCC--HHHHHHHCS
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccccc-ceeeEeccCCeeeeeeccccccccccccc--cchhhccce
Confidence            346799999999999999999999999998887777654 44567778877788889999999998887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||++++.||..+..|+..+.+.....  +.|+++|+||+|+...+. ..++++.+++.++++ +++|||++| ||
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~gv  156 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLNV  156 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccC--CCceEEEEEeechhhccccchhhhhHHHHhcCCE-EEEEeCCCCcCH
Confidence            9999999999999999999999987765433  689999999999976543 477899999999986 999999999 99


Q ss_pred             HHHHHHHHHHHhCC
Q 005908          578 NNVFSRIIWAAEHP  591 (670)
Q Consensus       578 ~~l~~~l~~~~~~~  591 (670)
                      +++|+.|++.+.+.
T Consensus       157 ~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         157 DEAFEQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.4e-26  Score=213.39  Aligned_cols=162  Identities=21%  Similarity=0.315  Sum_probs=144.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|.+|||||||+++|+++++...+.+|.+..+....+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~   80 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL--APMYYRGSAAA   80 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--THHHHTTCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHH--HHHHHhhccce
Confidence            3589999999999999999999999999988888888777777777766677889999999999888  88899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      |+|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+ ...++++++++.++++ +++|||++| ||++
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE  156 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccCC---cceEEEecccchhccccchhHHHHHHHHHHcCCE-EEEEecCCCCCHHH
Confidence            9999999999999999999888776654   69999999999997644 3477899999999986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|..|++.++
T Consensus       157 ~f~~l~~~i~  166 (167)
T d1z0ja1         157 LFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.94  E-value=2e-26  Score=214.15  Aligned_cols=162  Identities=23%  Similarity=0.403  Sum_probs=139.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+|+|++|||||||+++|+++++...+.+|.+..+. ..+..+|....+.+||++|++++..+  ...+++++|+++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~--~~~~~~~~~~~i   80 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEGFL   80 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhh--hhhcccccceeE
Confidence            479999999999999999999999998888888887665 44566767778889999999888877  788899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.||+.+..|+.++.+.....  +.|+++|+||+|+.+.+. ..++++++++.+++. +++|||++| ||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gv~e~  157 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDKV  157 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCT--TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCC--CCcEEEEeccccccccccccHHHHHHHHHHcCCe-EEEEcCCCCcCHHHH
Confidence            9999999999999999999998776544  799999999999876543 478899999999986 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 005908          581 FSRIIWAAEH  590 (670)
Q Consensus       581 ~~~l~~~~~~  590 (670)
                      |+.|++.+..
T Consensus       158 f~~l~~~i~~  167 (168)
T d1u8za_         158 FFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            9999988753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=213.59  Aligned_cols=159  Identities=21%  Similarity=0.319  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|++|||||||+++|.+..+... .+++.. .....+.++|....+.+||++|++.+..+  +..+++.+|++|+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~e~~~~~--~~~~~~~~d~~il   77 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGH-TYDRSIVVDGEEASLMVYDIWEQDGGRWL--PGHCMAMGDAYVI   77 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CE-EEEEEEEETTEEEEEEEEECC-------C--HHHHHTSCSEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeee-eecceeeccccccceeeeeccccccccee--cccchhhhhhhce
Confidence            7999999999999999999999876443 234443 34456777877788899999999999888  8889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.||+.+..|+.++.......  ++|+++|+||+|+.+.+. ...+++++++.++++ +++|||++| ||+++|
T Consensus        78 v~d~t~~~s~~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~~~~v~~~f  154 (168)
T d2gjsa1          78 VYSVTDKGSFEKASELRVQLRRARQTD--DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQALF  154 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSE-EEECBTTTTBSHHHHH
T ss_pred             eccccccccccccccccchhhcccccc--cceEEEeecccchhhhcchhHHHHHHHHHhcCCE-EEEEeCCCCcCHHHHH
Confidence            999999999999999999998765544  689999999999987544 478889999999986 999999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      +.|++.+.
T Consensus       155 ~~l~~~i~  162 (168)
T d2gjsa1         155 EGVVRQIR  162 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=212.26  Aligned_cols=160  Identities=20%  Similarity=0.366  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|.+|||||||+++|+++++...+.++++.......+...|....+.+||++|++.+...  ...+++.+|++++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~il   78 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL--IPSYIRDSAAAVV   78 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGG--HHHHHTTCSEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccc--hHHHhhccceEEE
Confidence            58999999999999999999999999888888887777777878777788999999999998887  7889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |||++++.||+.+..|+..+......   +.|+++|+||+|+.+... ..+++.++++.+++. +++|||++| ||+++|
T Consensus        79 v~d~~~~~s~~~i~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1          79 VYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLF  154 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHHH
T ss_pred             eeccccccchhhhHhhHHHHHHhcCC---CceEEEEecccchhhhhhhhHHHHHHHHHHcCCE-EEEecCCCCcCHHHHH
Confidence            99999999999999999988876543   699999999999976443 467899999999987 999999999 999999


Q ss_pred             HHHHHHHh
Q 005908          582 SRIIWAAE  589 (670)
Q Consensus       582 ~~l~~~~~  589 (670)
                      +.|++.+.
T Consensus       155 ~~i~~~l~  162 (164)
T d1yzqa1         155 RRVAAALP  162 (164)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhC
Confidence            99999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-26  Score=213.61  Aligned_cols=163  Identities=21%  Similarity=0.319  Sum_probs=144.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+|+|.+|||||||+++|+++.+...+.++++.++....+..++....+.+||++|++.+..+  +..+++++|+
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~--~~~~~~~~~~   80 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--TQSYYRSANA   80 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HGGGSTTCSE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhccce
Confidence            35699999999999999999999999998888888888888888888877778899999999999888  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|+|++++.++.....|+..+.+....   ..|+++|+||+|+.+... ..++++++++..+++ +++|||++| ||+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~SAktg~gV~  156 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASN---KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVE  156 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccc---cccEEEEEeecccccccchhhhHHHHHHHhCCCE-EEEEccCCCCCHH
Confidence            99999999999999999999988776543   589999999999876543 477889999999986 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|..|++.+.
T Consensus       157 e~f~~l~~~l~  167 (171)
T d2ew1a1         157 KLFLDLACRLI  167 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-26  Score=215.07  Aligned_cols=166  Identities=23%  Similarity=0.338  Sum_probs=139.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ....+||+|+|.+|||||||+++|+++.+...+.+|++. .....+...|....+.+||++|++.+..+  +..+++++|
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~--~~~~~~~a~   82 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTD   82 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTT--GGGGCTTCS
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhh--hhhcccccc
Confidence            345699999999999999999999999998888888875 45566777777788889999999998887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP  566 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  566 (670)
                      ++++|||+++++||++...|+....+....   +.|+++|+||+|+.+.             ....+++++++++++..+
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhcCC---CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            999999999999999876655544443332   6999999999998752             234678889999999767


Q ss_pred             cEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      |++|||++| ||+++|+.+++.+..|
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHcCC
Confidence            999999999 9999999999988654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.9e-26  Score=211.05  Aligned_cols=162  Identities=20%  Similarity=0.359  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+.... ...|....+.+||+.|.+.+...  ...+++.+++++
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~~~i   79 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEE-EETTEEEEEEEEEECCCGGGHHH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccce-eeeceeeeeeeeeccCccccccc--hhhhhhcccccc
Confidence            589999999999999999999999998887788887666554 45556778889999999888877  788899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      +|||++++.+|+.+..|+..+.+.....  ++|+++|+||+|+..+....++++++++.++++ +++|||++| ||+++|
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~gi~e~f  156 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCS--SCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCC--CCeEEEEecccccccccccHHHHHHHHHHhCCe-EEEEcCCCCcCHHHHH
Confidence            9999999999999999999998776544  699999999999988777788999999999986 999999999 999999


Q ss_pred             HHHHHHHhC
Q 005908          582 SRIIWAAEH  590 (670)
Q Consensus       582 ~~l~~~~~~  590 (670)
                      +.|++.+.+
T Consensus       157 ~~i~~~i~~  165 (166)
T d1ctqa_         157 YTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=4.9e-26  Score=211.69  Aligned_cols=164  Identities=19%  Similarity=0.345  Sum_probs=143.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+++|++|||||||+++|.++++...+.++.+.+.....+...+....+.+||++|++++..+  +..+++.+|+
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~--~~~~~~~ad~   80 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI--TTAYYRGAMG   80 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTTTTCCE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHH--HHHHHhcCCE
Confidence            45799999999999999999999999998888888887777777777766778889999999999888  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.++.....|+..+......   ..|+++|+||+|+.+... ..++++.+++.++++ +++|||++| ||+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gv~  156 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVK  156 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCS---CCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCC---cceEEEEEeecccccccccchhhhHHHHHHcCCE-EEEecCCCCcCHH
Confidence            99999999999999999998877665543   589999999999887544 367888999999986 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|+.|++.+.+
T Consensus       157 e~f~~l~~~i~e  168 (169)
T d3raba_         157 QTFERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5.2e-26  Score=211.49  Aligned_cols=163  Identities=19%  Similarity=0.346  Sum_probs=142.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|++|||||||+++|+++.+...+.+|.++.+ ...+..++....+.+||++|++.+..+  ...+++.+|++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~   79 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM--REQYMRTGDGF   79 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS--HHHHHHHCSEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccc--hhhhhhhccEE
Confidence            359999999999999999999999999888878777654 455677777788899999999999888  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC--ChH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK--DLN  578 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g--~v~  578 (670)
                      ++|||++++.||..+..|+..+.+.....  +.|+|+|+||+|+...+. ..++++++++.++++ ++++|||+|  ||+
T Consensus        80 llv~d~~d~~Sf~~~~~~~~~i~~~~~~~--~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~-~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          80 LIVYSVTDKASFEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLNVD  156 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBSHH
T ss_pred             EEecccccchhhhccchhhHHHHhhcccc--CccEEEEecccchhhhceeehhhHHHHHHHcCCE-EEEEcCCCCCcCHH
Confidence            99999999999999999999988775544  699999999999987654 478899999999985 999999975  899


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|+.|++.+.+
T Consensus       157 ~~F~~l~~~i~~  168 (169)
T d1x1ra1         157 KTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.8e-26  Score=216.73  Aligned_cols=163  Identities=26%  Similarity=0.379  Sum_probs=137.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++||+++|++|||||||++||+.+.|...+.++.. ........+...+.+.+||++|++.+...+..+++++|++|+||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            57999999999999999999999999887555443 33344556677899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA  158 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (670)
                      |+++++||+.+.+.|...++...+++|++|||||+|+...            +.+  ..+....++++++. .+|+||||
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V--~~~e~~~~a~~~~~-~~y~E~SA  158 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIECSA  158 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEECBT
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcc--hHHHHHHHHHHhCC-CeEEEEeC
Confidence            9999999999988788888888889999999999998642            223  34456678888764 47999999


Q ss_pred             ccCCC-chHHHHHHHHHHcC
Q 005908          159 TTMIQ-VPDVFYYAQKAVLH  177 (670)
Q Consensus       159 ~~~~g-i~~l~~~i~~~~~~  177 (670)
                      ++|.| |+++|+.+++.++.
T Consensus       159 k~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         159 LQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99985 99999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=216.03  Aligned_cols=164  Identities=18%  Similarity=0.336  Sum_probs=139.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+++|+++.+...+.+|.+..+. .....++....+.+||++|++.+...  ...+++.+|+++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~a~~~i   78 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM--QRLSISKGHAFI   78 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH--HHHHHHHCSEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc-cceeeccccceecccccccccccccc--ccccccceeEEE
Confidence            589999999999999999999999998888888876544 45566766678889999999888887  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||+++++||..+..|+..+.+..... .++|+++|+||+|+...+ ...++++++++.++++ +++|||++| ||+++
T Consensus        79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~-~~e~Sak~~~~v~e~  156 (171)
T d2erxa1          79 LVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKEL  156 (171)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHHH
T ss_pred             EEeecccccchhcccchhhhhhhhhccC-CCCcEEEEeecccccccccccHHHHHHHHHHcCCe-EEEEcCCCCcCHHHH
Confidence            9999999999999999998887654321 168999999999997654 3477899999999986 999999999 99999


Q ss_pred             HHHHHHHHhCC
Q 005908          581 FSRIIWAAEHP  591 (670)
Q Consensus       581 ~~~l~~~~~~~  591 (670)
                      |+.|++.+.+.
T Consensus       157 f~~l~~~~~~~  167 (171)
T d2erxa1         157 FQELLNLEKRR  167 (171)
T ss_dssp             HHHHHHTCCSS
T ss_pred             HHHHHHHHHHh
Confidence            99999876543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-26  Score=212.78  Aligned_cols=162  Identities=22%  Similarity=0.356  Sum_probs=140.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|++|||||||+++|+++.+...+.+|+++ .....+..++....+.+||++|++.+..+  ...+++++|++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~a~~~   78 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGF   78 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccc--hHHHhhcccce
Confidence            3689999999999999999999999998888777775 44556677767788899999999888877  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.+|..+..|+..+.......  ++|+++|+||+|+...+ ...++++.+++.++++ +++|||++| ||++
T Consensus        79 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          79 ILVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVDE  155 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHHH
T ss_pred             eeeeeecchhhhhhhhchhhhhhhhccCC--CCCEEEEEEccchhhcccchHHHHHHHHHHcCCe-EEEECCCCCcCHHH
Confidence            99999999999999999999887765443  69999999999987643 3477888999999986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.|++.+.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-26  Score=211.32  Aligned_cols=162  Identities=20%  Similarity=0.324  Sum_probs=135.8

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ++++||+++|++|||||||+++|+++.|....+++.+.. .......+..+.+.+||++|++.+....+.+++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            467999999999999999999999999888755444433 3444455667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |||++++.+++.+. +|+..+.+.  .+++|+++|+||+|+... .+  ..+.++.+++.++.  ++++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          81 VFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDLAAR-TV--ESRQAQDLARSYGI--PYIETSAKTRQGVED  154 (166)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHTCSSCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHTC--CEEECCTTTCTTHHH
T ss_pred             eecccccccHHHHH-HHHHHHHHhcCCCCCeEEEEecccccccc-cc--cHHHHHHHHHHhCC--eEEEEcCCCCcCHHH
Confidence            99999999999988 599988763  357999999999998643 33  34556788888873  799999999999999


Q ss_pred             HHHHHHHHHcC
Q 005908          167 VFYYAQKAVLH  177 (670)
Q Consensus       167 l~~~i~~~~~~  177 (670)
                      +|+.+++.+..
T Consensus       155 ~f~~i~~~i~~  165 (166)
T d1ctqa_         155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=216.56  Aligned_cols=160  Identities=18%  Similarity=0.288  Sum_probs=137.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|+++.+...+.+|++.++....+...|....+.+||++|++.+..+  +..+++++|+++
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i   80 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--RDGYYIQAQCAI   80 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSC--GGGGTTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccccccccccccccccccccccee--cchhcccccchh
Confidence            389999999999999999999999998888888888888888888888889999999999999888  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      +|||++++.||+.+..|+..+.+...    ++|+++|+||+|+...+.. .+...+++..+++ +++|||++| ||+++|
T Consensus        81 lv~d~~~~~Sf~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~-~~~~~~~~~~~~~-~~e~Sak~~~~v~e~f  154 (170)
T d1i2ma_          81 IMFDVTSRVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQ-YYDISAKSNYNFEKPF  154 (170)
T ss_dssp             EEEETTSGGGGTTHHHHHHHHHHHHC----SCCEEEEEECCCCSCSCCT-TTSHHHHSSCSSE-EEEEBTTTTBTTTHHH
T ss_pred             hccccccccccchhHHHHHHHhhccC----CCceeeecchhhhhhhhhh-hHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999999887654    6999999999999875544 3455677777776 999999999 999999


Q ss_pred             HHHHHHHhC
Q 005908          582 SRIIWAAEH  590 (670)
Q Consensus       582 ~~l~~~~~~  590 (670)
                      ++|++.+.+
T Consensus       155 ~~l~~~l~~  163 (170)
T d1i2ma_         155 LWLARKLIG  163 (170)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcc
Confidence            999997753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.2e-26  Score=211.13  Aligned_cols=162  Identities=20%  Similarity=0.332  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+++|+++++...+.+|.+..+. ..+..++....+.+||+.|++.+..+  +..+++.+|+++
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i   79 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc-eeEEeeeeEEEeccccccCccccccc--ccccccccceeE
Confidence            589999999999999999999999999888888876554 45567767888999999999888887  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      +|||++++.||+.+..|+..+.+.....  +.|+++|+||+|+...... .+++..+++++...++++|||++| ||+++
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~--~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  157 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCC--CCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHH
Confidence            9999999999999999999987765433  6899999999999875444 677788888865556999999999 99999


Q ss_pred             HHHHHHHHh
Q 005908          581 FSRIIWAAE  589 (670)
Q Consensus       581 ~~~l~~~~~  589 (670)
                      |+.|++.+.
T Consensus       158 F~~l~~~i~  166 (167)
T d1c1ya_         158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-26  Score=211.78  Aligned_cols=163  Identities=18%  Similarity=0.336  Sum_probs=138.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+|+|.+|||||||+++|+++.+...+.+|.++ .....+..+|....+.+||++|.+.+...  ...+++.+|++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   80 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAM--REQYMRTGEGF   80 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHH--HHHHHHHCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeeccccccccccccccccccccc--ccccccccceE
Confidence            4589999999999999999999999988888777765 44466667767778899999999888877  77889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||.+++.||+.+..|+..+.+.....  ..|+|+|+||+|+...+ ...++++++++.++++ +++|||++| ||++
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~~~~i~e  157 (171)
T d2erya1          81 LLVFSVTDRGSFEEIYKFQRQILRVKDRD--EFPMILIGNKADLDHQRQVTQEEGQQLARQLKVT-YMEASAKIRMNVDQ  157 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred             EEeeccccccchhhHHHHhHHHHhhcccC--CCCEEEEEeccchhhhccchHHHHHHHHHHcCCE-EEEEcCCCCcCHHH
Confidence            99999999999999999999887765544  69999999999998654 3477899999999986 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|+.|++.+.+
T Consensus       158 ~f~~l~~~i~k  168 (171)
T d2erya1         158 AFHELVRVIRK  168 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.8e-26  Score=210.49  Aligned_cols=159  Identities=21%  Similarity=0.307  Sum_probs=130.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      ++||+++|++|||||||++||+++.|...+.++.+. .......++..+.+.+|||+|++.+. ....+++.+|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            689999999999999999999999998885554433 33444555667899999999998764 5677899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHH--hcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC-CchHH
Q 005908           91 ACNQQSTLSRLSSYWLPELR--RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVPDV  167 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~--~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~-gi~~l  167 (670)
                      |++++.+++.+.. |...+.  ...++.|+++||||+|+...+.+  ..+.+..++++++.  +|++|||++|. ||+++
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V--~~~e~~~~a~~~~~--~~~e~Saktg~gnV~e~  155 (168)
T d2atva1          81 DITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELAC--AFYECSACTGEGNITEI  155 (168)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--EEEECCTTTCTTCHHHH
T ss_pred             ccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccC--cHHHHHHHHHHhCC--eEEEEccccCCcCHHHH
Confidence            9999999999985 555443  33458999999999999877666  34556788888873  79999999998 59999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |..+++.+.
T Consensus       156 F~~l~~~i~  164 (168)
T d2atva1         156 FYELCREVR  164 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.7e-26  Score=210.87  Aligned_cols=162  Identities=19%  Similarity=0.327  Sum_probs=139.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+|+|++|||||||+++|+++++...+.++.............+....+.+||++|++.+..+  +..+++.+|++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~d~~   79 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAAGA   79 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--CHHHHTTCSEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhH--HHHHhhccCEE
Confidence            4689999999999999999999999998888888777777777777766778899999999998888  88899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||++++.||+.+..|+..+.+....   ++|+++|+||+|+...+ ...+++..+++..+++ +++|||++| ||++
T Consensus        80 ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~-~~e~Sa~tg~~V~e  155 (173)
T d2a5ja1          80 LLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEE  155 (173)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTHHH
T ss_pred             EEEEeecChHHHHhHHHHHHHHHHhCCC---CCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCE-EEEecCCCCCCHHH
Confidence            9999999999999999999988776543   69999999999987654 3477899999999986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.|++.+.
T Consensus       156 ~f~~i~~~i~  165 (173)
T d2a5ja1         156 AFINTAKEIY  165 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.7e-26  Score=212.11  Aligned_cols=160  Identities=20%  Similarity=0.293  Sum_probs=130.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      -+||+|+|++|||||||+++++++++..... +...... .........+.+.+||++|++.+...++.+++.+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            3899999999999999999999999877643 3222222 3334445578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||++++.+|+.+.. |+..+.+ ..+++|++||+||+|+...+..  ..+....+++..+  .++++|||++|.||+++|
T Consensus        83 ~d~~~~~sf~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~a~~~~--~~~~e~Sa~tg~~V~e~f  157 (173)
T d2a5ja1          83 YDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--LIFMETSAKTACNVEEAF  157 (173)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHH
T ss_pred             EeecChHHHHhHHH-HHHHHHHhCCCCCeEEEEecCCchhhhhhh--HHHHHHHHHHHcC--CEEEEecCCCCCCHHHHH
Confidence            99999999999986 6666655 4568999999999998776655  4455677888776  379999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      ..+++.+.
T Consensus       158 ~~i~~~i~  165 (173)
T d2a5ja1         158 INTAKEIY  165 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=209.80  Aligned_cols=162  Identities=17%  Similarity=0.207  Sum_probs=126.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ..+||+|+|++|||||||+++|++++|... .+++.+...  ......+..+.+.+|||+|++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            458999999999999999999999987665 444333333  33445556688999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +|||++++.++..+...|....+......|+++|+||+|+.....+  ..+.+..+++.++  .++++|||++|.||+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~gi~e~  160 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG--LPFMETSAKTGLNVDLA  160 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccc--cHHHHHHHHHHcC--CEEEEEeCCCCcCHHHH
Confidence            9999999999999987555555556668999999999999887766  3455677788876  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+.+++.+.
T Consensus       161 f~~l~~~i~  169 (170)
T d2g6ba1         161 FTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcC
Confidence            999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.1e-26  Score=212.90  Aligned_cols=163  Identities=18%  Similarity=0.231  Sum_probs=121.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE---eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      -+||+++|++|||||||+++|+++++...+.++.+...   ...........+.+|||+|++++...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            37999999999999999999999998877444333222   112223345778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      |||++++.|++.+. .|++.+...     ..++|+++|+||+|+.+.+.. ...+..+.++++++. .++++|||++|.|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~e~SA~~g~g  158 (175)
T d1ky3a_          82 VYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAKNAIN  158 (175)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTTTTBS
T ss_pred             Eeecccccccchhh-hcchhhhhhhhhcccccCcEEEEecccchhhhhcc-hhHHHHHHHHHHcCC-CeEEEEeCCCCcC
Confidence            99999999999987 588887542     247899999999999876554 345566788888875 3799999999999


Q ss_pred             chHHHHHHHHHHcC
Q 005908          164 VPDVFYYAQKAVLH  177 (670)
Q Consensus       164 i~~l~~~i~~~~~~  177 (670)
                      |+++|+++++.++.
T Consensus       159 v~e~f~~l~~~~l~  172 (175)
T d1ky3a_         159 VDTAFEEIARSALQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.1e-26  Score=212.19  Aligned_cols=161  Identities=22%  Similarity=0.249  Sum_probs=133.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+++|++|||||||+++|++++|....+++.....  .....+.....+.+|||||++++..+++.+++.+|++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            358999999999999999999999998877555444443  233344567889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||.++++++..+.. |...+. ...+++|+++|+||+|+......  ..+....+++..+  .++++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sak~~~gi~e~  158 (174)
T d2bmea1          84 VYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDADREV--TFLEASRFAQENE--LMFLETSALTGENVEEA  158 (174)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHH
T ss_pred             EEecccchhHHHHhh-hhcccccccCCceEEEEEEecccccchhch--hhhHHHHHHHhCC--CEEEEeeCCCCcCHHHH
Confidence            999999999999986 555554 45568999999999998766555  3445567777776  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+++++.++
T Consensus       159 f~~l~~~i~  167 (174)
T d2bmea1         159 FVQCARKIL  167 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=210.14  Aligned_cols=160  Identities=20%  Similarity=0.252  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      .||+|+|++|||||||+++|+++.+...+.+|.+. .........+....+.+||++|++.+..+  +..+++++|++|+
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~il   79 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRL--RPLSYPDTDVILM   79 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCSEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccccccceeeeccccCccchhccc--chhhcccchhhhh
Confidence            68999999999999999999999998888788764 34455666667778999999999999888  8889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEEe
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~v  570 (670)
                      |||++++.||+.+..|+..+......   +.|+++|+||+|+.+.+             ...++++.+++.++..++++|
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  156 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC  156 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhCC---CCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEe
Confidence            99999999999888766554443332   69999999999997532             236788899999997779999


Q ss_pred             ecccC-ChHHHHHHHHHHHh
Q 005908          571 SMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       571 SA~~g-~v~~l~~~l~~~~~  589 (670)
                      ||++| ||+++|+.+++.+.
T Consensus       157 SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         157 SAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHh
Confidence            99999 99999999998875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=210.56  Aligned_cols=160  Identities=20%  Similarity=0.256  Sum_probs=129.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      -+||+|+|++|||||||+++|+++.+.....+..+...  .....+...+.+.+|||+|++++...+..+++.+|++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            58999999999999999999999998777444333333  3344556678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      ||++++.|+..+.. |+..+.+. .+++|++|||||+|+.+.+..  ..+.........+  .++++|||++|.||+++|
T Consensus        84 ~d~~~~~S~~~~~~-~~~~i~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~g~~i~e~f  158 (175)
T d2f9la1          84 YDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNN--LSFIETSALDSTNVEEAF  158 (175)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred             EECCCcccchhHHH-HHHHHHHhcCCCCcEEEEEeeecccccccc--hHHHHHHhhcccC--ceEEEEecCCCcCHHHHH
Confidence            99999999999985 77777654 467999999999999876544  3333445555554  379999999999999999


Q ss_pred             HHHHHHHc
Q 005908          169 YYAQKAVL  176 (670)
Q Consensus       169 ~~i~~~~~  176 (670)
                      +.+++.+.
T Consensus       159 ~~l~~~i~  166 (175)
T d2f9la1         159 KNILTEIY  166 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.9e-25  Score=212.65  Aligned_cols=162  Identities=17%  Similarity=0.252  Sum_probs=134.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .-+||+|+|++|||||||+++|+++.+.....++.+...  ....+....+.+.+|||||++++..++..+++++|++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            358999999999999999999999998887555444433  345556678899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||+++++++..+.. |...+. ....++|+++|+||+|+.+...+  ..+....+....+  .++++|||++|.||+++
T Consensus        85 v~d~t~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          85 VYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHHHH
T ss_pred             EEeCcchhhhhhHhh-hhhhhhhcccCCceEEEEEeccccccccch--hHHHHhhhhhccC--cceEEEecCcCccHHHH
Confidence            999999999999986 555554 45678999999999999887666  3444566666665  36999999999999999


Q ss_pred             HHHHHHHHcC
Q 005908          168 FYYAQKAVLH  177 (670)
Q Consensus       168 ~~~i~~~~~~  177 (670)
                      |+.+++.+..
T Consensus       160 f~~l~~~i~~  169 (194)
T d2bcgy1         160 FLTMARQIKE  169 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-25  Score=207.90  Aligned_cols=163  Identities=19%  Similarity=0.343  Sum_probs=139.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+|+|++|||||||+++|.++.+...+.++++.......+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~--~~~~~~~~~~   79 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--TSAYYRGAVG   79 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--CHHHHTTCSE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHH--HHHHhhccCe
Confidence            35689999999999999999999999998888888877777788888877778899999999998887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||.+++.||.....|+..+.+....   +.|+++|+||+|+.+.+.. .+....+.+..+.+ ++++||++| |++
T Consensus        80 ~i~v~d~~~~~S~~~~~~~~~~i~~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~i~  155 (175)
T d2f9la1          80 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVE  155 (175)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECCCcccchhHHHHHHHHHHhcCC---CCcEEEEEeeecccccccchHHHHHHhhcccCce-EEEEecCCCcCHH
Confidence            99999999999999999999999887653   6899999999999875444 45566677777665 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|+.+++.+.
T Consensus       156 e~f~~l~~~i~  166 (175)
T d2f9la1         156 EAFKNILTEIY  166 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.3e-26  Score=209.56  Aligned_cols=161  Identities=20%  Similarity=0.293  Sum_probs=136.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|+++.+...+.||.+..+..... .+|....+.+||++|++.+..   ...+++.+|+++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~-~~~~~~~l~i~D~~g~~~~~~---~~~~~~~~~~~i   77 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQEDTIQ---REGHMRWGEGFV   77 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEE-ETTEEEEEEEEECCCCCCCHH---HHHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccccc-ccccceEEEEeeccccccccc---chhhhcccccce
Confidence            4899999999999999999999999998888998877665544 455677888999999876543   456889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-C-hHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-D-LNN  579 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~-v~~  579 (670)
                      +|||++++.||..+..|...+.......  +.|+++|+||+|+.+.+ ...+++++++++++++ ++++||++| | |++
T Consensus        78 lv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~Saktg~gnV~e  154 (168)
T d2atva1          78 LVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNITE  154 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCHHH
T ss_pred             eecccCCccchhhhhhhccccccccccc--CcceeeeccchhhhhhccCcHHHHHHHHHHhCCe-EEEEccccCCcCHHH
Confidence            9999999999999999877665554433  69999999999997654 4478899999999986 999999998 5 999


Q ss_pred             HHHHHHHHHhC
Q 005908          580 VFSRIIWAAEH  590 (670)
Q Consensus       580 l~~~l~~~~~~  590 (670)
                      +|..|++.+.+
T Consensus       155 ~F~~l~~~i~~  165 (168)
T d2atva1         155 IFYELCREVRR  165 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=207.34  Aligned_cols=162  Identities=22%  Similarity=0.294  Sum_probs=142.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+|+|.+|||||||+++|+++.+...+.+|.+..+....+...+....+.+||++|++.+..+  +..+++++|++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   82 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--APMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhh--HHHHhhCcceE
Confidence            3589999999999999999999999998888888887777777777766778889999999999888  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++|||.+++.+|..+..|...+.+....   +.|+++|+||+|+..++. ..+.++++++.++++ +++|||++| ||++
T Consensus        83 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~-~~e~SAk~g~~V~e  158 (170)
T d1r2qa_          83 IVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEeccchhhHHHHHHHHhhhhhhccCC---CceEEeecccccccccccccHHHHHHHHHhcCCE-EEEeeCCCCCCHHH
Confidence            9999999999999999999988765543   699999999999876543 478899999999886 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|+.|++.+.
T Consensus       159 ~f~~l~~~i~  168 (170)
T d1r2qa_         159 IFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.9e-25  Score=205.39  Aligned_cols=166  Identities=16%  Similarity=0.285  Sum_probs=141.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      .-+||+|+|++|||||||+++|+++.+...+.+|++.......+...+....+.+||+.|.......  ...++..+|++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~   82 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL--RTPFYRGSDCC   82 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH--HGGGGTTCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhh--hhhhhhccceE
Confidence            4589999999999999999999999999888888888877788888866778889999998777776  77889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++++|.+++.||+.+..|+.++....... ..+.|+++|+||+|+.++....+++++++++.+..++++|||++| ||++
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999998887654321 126899999999999876667889999999887556999999999 9999


Q ss_pred             HHHHHHHHHh
Q 005908          580 VFSRIIWAAE  589 (670)
Q Consensus       580 l~~~l~~~~~  589 (670)
                      +|++|++.+.
T Consensus       163 ~f~~l~~~il  172 (174)
T d1wmsa_         163 AFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.4e-25  Score=207.21  Aligned_cols=160  Identities=20%  Similarity=0.275  Sum_probs=133.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+||+++|++|||||||+++|++++|...++++.+...  .........+.+.+|||+|++++...+..+++.+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            358999999999999999999999999888666555322  345556667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH-HhcCCCCCEEEEEeCCCCCCC---CCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           89 TYACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l-~~~~~~~pvilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |||++++.+++.+.. |...+ .......|+++|+||+|+.+.   +.+  ..+....++++.+.  +|++|||++|.||
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~gV  156 (170)
T d1ek0a_          82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDMLQEGGERKV--AREEGEKLAEEKGL--LFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHTC--EEEECCTTTCTTH
T ss_pred             EEeCCcccchhhhhh-hhhhhccccccccceeeeecccccccccchhhh--hHHHHHHHHHHcCC--EEEEecCCCCcCH
Confidence            999999999999986 55544 445568999999999998654   333  34556788888873  7999999999999


Q ss_pred             hHHHHHHHHHH
Q 005908          165 PDVFYYAQKAV  175 (670)
Q Consensus       165 ~~l~~~i~~~~  175 (670)
                      +++|+.|++.+
T Consensus       157 ~e~F~~i~~~i  167 (170)
T d1ek0a_         157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-25  Score=209.27  Aligned_cols=164  Identities=21%  Similarity=0.350  Sum_probs=137.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      .+.+||+|+|++|||||||+++|+++.+...+.+|+++... ..+...+....+.+||+.|++.+..+  ...+++.+|+
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~   79 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDV   79 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeecee-eeeeccCcceEEEeecccccccchhh--hhhcccccce
Confidence            45699999999999999999999999999888888876544 44556667778889999999999888  7889999999


Q ss_pred             EEEEEECCCcccHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908          501 TIFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (670)
                      +++|||++++.||+.+.. |...+.....    +.|+++|+||+|+.+.+             ....+...+++.++..+
T Consensus        80 ~ilv~d~~~~~sf~~i~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  155 (183)
T d1mh1a_          80 SLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  155 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             eeeeeccchHHHHHHHHHHHHHHHHHhCC----CCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCce
Confidence            999999999999999876 4455544432    68999999999986532             22557788889988767


Q ss_pred             cEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      |++|||++| ||+++|+.+++.+..|
T Consensus       156 ~~E~SAk~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         156 YLECSALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             EEEcCCCCCcCHHHHHHHHHHHHcCC
Confidence            999999999 9999999999998765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-25  Score=207.03  Aligned_cols=161  Identities=21%  Similarity=0.337  Sum_probs=133.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCC---hhhHhhhhchHhhcccc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP---EEGVKKILSNKEALASC  498 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g---~~~~~~~~~~~~~~~~a  498 (670)
                      -+||+++|.+|||||||+++|.+..+...+. +|++.+.....+.++|....+.+||..+   ++++  +  +..+++.+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~--~~~~~~~~   78 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L--HDHCMQVG   78 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--H--HHCCCCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--c--cccccccc
Confidence            5899999999999999999999887665444 5666667777788887677777888654   4443  3  56788999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-D  576 (670)
Q Consensus       499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~  576 (670)
                      |++|+|||++++.||+.+..|+..+.......  ++|+++|+||+|+.+.+ ...++++++++.++++ +++|||++| |
T Consensus        79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~g~~  155 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHN  155 (172)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBS
T ss_pred             ceeeeeecccccchhhhhhhhhhhhhhccccC--CceEEEEeccccccccccccHHHHHHHHHHcCCe-EEEEeCCCCcC
Confidence            99999999999999999999999887665433  69999999999998754 3477889999999986 999999999 9


Q ss_pred             hHHHHHHHHHHHhC
Q 005908          577 LNNVFSRIIWAAEH  590 (670)
Q Consensus       577 v~~l~~~l~~~~~~  590 (670)
                      |+++|+.|++.+..
T Consensus       156 i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         156 VKELFEGIVRQVRL  169 (172)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6e-25  Score=205.56  Aligned_cols=165  Identities=18%  Similarity=0.338  Sum_probs=127.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-ceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      .+||+++|++|||||||+++|+++++...+.+|.+...........+. ...+.+||++|++.+...  +..+++.+|++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   79 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--GVAFYRGADCC   79 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCCEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhH--HHHHhhccceE
Confidence            489999999999999999999999998888777776666555554533 346778999999888877  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCCc--ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYT--MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++|||++++.||+.+..|+.++....... ..++|+++|+||+|+.+.+  ...++++++++.++..++++|||++| ||
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          80 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            99999999999999999999887654321 1268999999999998643  33678899999998777999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|++|++.+.
T Consensus       160 ~e~f~~l~~~~l  171 (175)
T d1ky3a_         160 DTAFEEIARSAL  171 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6e-25  Score=203.63  Aligned_cols=162  Identities=26%  Similarity=0.423  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+++|+++++...+.+|++.++....+.++|....+.+||++|++.+..+  +..+++++|+++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~i   79 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--TTAYYRGAMGII   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--CHHHHTTEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhcCCEEE
Confidence            489999999999999999999999998888899998898899999988888889999999999888  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      +|||.+++.||+.+..|+..+......   ..|+++++||.|+.+.....++++++++.++++ +++|||++| ||+++|
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~e~f  155 (166)
T d1g16a_          80 LVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF  155 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHHH
T ss_pred             EEEECCCccCHHHHHhhhhhhhccccC---cceeeeecchhhhhhhhhhHHHHHHHHHhcCCe-EEEECCCCCCCHHHHH
Confidence            999999999999999988887776554   589999999999998777889999999999985 999999999 999999


Q ss_pred             HHHHHHHhC
Q 005908          582 SRIIWAAEH  590 (670)
Q Consensus       582 ~~l~~~~~~  590 (670)
                      +.|++.+.+
T Consensus       156 ~~l~~~i~~  164 (166)
T d1g16a_         156 FTLAKLIQE  164 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-25  Score=206.48  Aligned_cols=163  Identities=19%  Similarity=0.338  Sum_probs=143.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+++|.+|||||||+++|+++++...+.+|.........+...+....+.+||++|++++..+  +..+++.+|+
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~   80 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--TRSYYRGAAG   80 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTSTTCSE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhh--HHHHhhhCCE
Confidence            46699999999999999999999999998888888887777777777766778889999999999888  8889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +++|||.+++.+|..+..|+..+......   ++|+++|+||+|+...... .+.+..+++.++++ +++|||++| |++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~~~gi~  156 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVE  156 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCC---ceEEEEEEecccccchhchhhhHHHHHHHhCCCE-EEEeeCCCCcCHH
Confidence            99999999999999999999998876543   6999999999998664433 67778899998886 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|+.+.+.+.
T Consensus       157 e~f~~l~~~i~  167 (174)
T d2bmea1         157 EAFVQCARKIL  167 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.1e-25  Score=207.68  Aligned_cols=164  Identities=22%  Similarity=0.342  Sum_probs=137.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|+++.+...+.+|++... .......|....+.+||++|++++..+  ...+++.+|+++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i   79 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRL--RPLSYPQTDVFL   79 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCSEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhh--hhhcccccceee
Confidence            48999999999999999999999999888888887544 444555656778889999999999888  888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCcEE
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~  569 (670)
                      +|||+++++||+.+..|+.........   +.|+++|+||+|+.+.             ....++++++++.++..++++
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~---~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE  156 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEE
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCC---CCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEE
Confidence            999999999999998765554443332   6999999999998642             234778889999987666999


Q ss_pred             eecccC-ChHHHHHHHHHHHhCCC
Q 005908          570 VSMKSK-DLNNVFSRIIWAAEHPH  592 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~~~~~  592 (670)
                      |||++| ||+++|+.+++.+.++.
T Consensus       157 ~SAk~~~~V~e~f~~l~~~~~~~~  180 (191)
T d2ngra_         157 CSALTQKGLKNVFDEAILAALEPP  180 (191)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHTSCC
T ss_pred             EeCCCCcCHHHHHHHHHHHHhcCc
Confidence            999999 99999999999887653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.3e-25  Score=204.86  Aligned_cols=161  Identities=19%  Similarity=0.170  Sum_probs=127.4

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+.+||+++|++|||||||+++|++++|....++..........+++..+.+.+|||+|+..+     .+++.+|++|+
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            4578999999999999999999999999876665544444444556677899999999998653     47899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |||++++.||+.+.. |.+++...    ..++|+++|+||.|+..........+..+.++.+... .+|+||||++|.||
T Consensus        77 Vfd~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~~~v  154 (175)
T d2bmja1          77 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKR-CSYYETCATYGLNV  154 (175)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTT-EEEEEEBTTTTBTH
T ss_pred             EeecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCC-CeEEEeCCCCCcCH
Confidence            999999999999984 88887543    2467999999998876543221234445666655543 37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|..+++.+.
T Consensus       155 ~~~F~~l~~~i~  166 (175)
T d2bmja1         155 DRVFQEVAQKVV  166 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.9e-25  Score=205.49  Aligned_cols=165  Identities=18%  Similarity=0.300  Sum_probs=148.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      ..+||+|+|.+|||||||+++|.++++...+.++++.......+.+++....+.+||++|++++..+  +..+++.+|++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~i   83 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--TPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--HHHHHTTCCEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHH--HHHHHhcCCEE
Confidence            4589999999999999999999999998888888877777778888877788999999999998887  78899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l  580 (670)
                      ++|||++++.+++....|+.++.+.....  ..|+++++||.|.........++.++++.+++. ++++||++| ||+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRN--DIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQCA  160 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCS--CCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             EEEEECCCccccccchhhhhhhccccccc--ceeeEEEeeccccccccccHHHHHHHHHHCCCE-EEEEeCCCCCCHHHH
Confidence            99999999999999999999987765554  689999999999988777788899999999986 999999999 99999


Q ss_pred             HHHHHHHHhCC
Q 005908          581 FSRIIWAAEHP  591 (670)
Q Consensus       581 ~~~l~~~~~~~  591 (670)
                      |+++++.+.++
T Consensus       161 f~~l~~~l~~~  171 (177)
T d1x3sa1         161 FEELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHccC
Confidence            99999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.7e-25  Score=204.68  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|+++++...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|+++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~--~~~~~~~~~~~i   80 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--APMYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHH--HHHHHhccceEE
Confidence            489999999999999999999999999988899888888888888877788999999999988887  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC----cccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY----TMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      +|||.+++.||..+..|+..+......   ..|+++|+||+|+.+.    ....++++++++.++++ ++++||++| ||
T Consensus        81 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gV  156 (170)
T d1ek0a_          81 VVYDVTKPQSFIKARHWVKELHEQASK---DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENV  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred             EEEeCCcccchhhhhhhhhhhcccccc---ccceeeeecccccccccchhhhhHHHHHHHHHHcCCE-EEEecCCCCcCH
Confidence            999999999999999999887766544   5899999999998653    33477889999999985 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|+.|++.+.
T Consensus       157 ~e~F~~i~~~i~  168 (170)
T d1ek0a_         157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1e-24  Score=201.89  Aligned_cols=159  Identities=19%  Similarity=0.336  Sum_probs=137.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|++|||||||+++|+++++...+.++++.......+...+......+||..|...+.... +..+++++|++|
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM-VQHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT-HHHHHTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhcccc-ceeeecCCCceE
Confidence            5899999999999999999999999998888888888877788777677788899999987665431 567889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeeccc---C-Ch
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKS---K-DL  577 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~---g-~v  577 (670)
                      +|||++++.||+.+..|+.++.+.....  +.|+++||||+|+.+.+ ...++++++++.++++ +++||||+   + ||
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAkt~~~~~~V  157 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLAN--DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDNDHV  157 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGGGSCH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCC--CCeEEEEeccccchhccchhHHHHHHHHHHCCCE-EEEEecccCCcCcCH
Confidence            9999999999999999999998876544  79999999999997754 4578899999999985 99999997   5 89


Q ss_pred             HHHHHHHH
Q 005908          578 NNVFSRII  585 (670)
Q Consensus       578 ~~l~~~l~  585 (670)
                      +++|++|+
T Consensus       158 ~e~F~~lA  165 (165)
T d1z06a1         158 EAIFMTLA  165 (165)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998873

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.6e-24  Score=206.11  Aligned_cols=163  Identities=23%  Similarity=0.353  Sum_probs=144.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ...+||+|+|.+|||||||+++|+++.+...+.+|.+..+....+..+|+...+.+||++|++++..+  +..+++++|+
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~--~~~~~~~a~~   81 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--TSSYYRGSHG   81 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGGTTCSE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHH--HHHHhccCCE
Confidence            45699999999999999999999999988888888888888788888877888999999999999888  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.+|.....|+..+.+....   +.|+++|+||+|+.+.... .++...+++..++. ++++||++| ||+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~SAk~g~gi~  157 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVE  157 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccC---CceEEEEEeccccccccchhHHHHhhhhhccCcc-eEEEecCcCccHH
Confidence            99999999999999999998888765543   6999999999999875444 67778888888877 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|+.+++.+.
T Consensus       158 e~f~~l~~~i~  168 (194)
T d2bcgy1         158 DAFLTMARQIK  168 (194)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=203.63  Aligned_cols=162  Identities=21%  Similarity=0.274  Sum_probs=130.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      .+-+||+|+|++|||||||+++|++++|...++++.+...  .........+.+.+||++|..+.......++..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            4568999999999999999999999998887555444443  33334455688999999999988888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      ++||.+++.|++.+.. |++.+.+.     ..+.|++|||||+|+.+ +.+  ..+.+..++++.+.+ +|+||||++|.
T Consensus        84 ~~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v--~~~~~~~~~~~~~~~-~~~e~Sak~~~  158 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-RQV--STEEAQAWCRDNGDY-PYFETSAKDAT  158 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS--CHHHHHHHHHHTTCC-CEEECCTTTCT
T ss_pred             EEEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchhh-ccC--cHHHHHHHHHHcCCC-eEEEEcCCCCc
Confidence            9999999999999885 88877543     24689999999999964 344  344567778776543 79999999999


Q ss_pred             CchHHHHHHHHHHc
Q 005908          163 QVPDVFYYAQKAVL  176 (670)
Q Consensus       163 gi~~l~~~i~~~~~  176 (670)
                      ||+++|+.+++.++
T Consensus       159 gI~e~f~~l~~~il  172 (174)
T d1wmsa_         159 NVAAAFEEAVRRVL  172 (174)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.5e-25  Score=209.25  Aligned_cols=161  Identities=15%  Similarity=0.271  Sum_probs=103.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      .-+||+|+|++|||||||+++|+++.+....+++.+...  ....++...+.+.+|||||++.+...+..+++++|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            458999999999999999999999888766443333222  344455667889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908           89 TYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      |||++++.|++.+.. |...+. ....+.|+++|+||+|+......  ..+....++...+  .++++|||++|.||+++
T Consensus        85 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~~k~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1          85 VYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVENA  159 (173)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHHHH
T ss_pred             EEECCChhhHHHHHH-HHHHhhhhccCCceEEEEEecccchhhccc--HHHHHHHHHHhcC--CEEEEEeCCCCCCHHHH
Confidence            999999999999986 666665 45568999999999999877665  3344566667666  37999999999999999


Q ss_pred             HHHHHHHHc
Q 005908          168 FYYAQKAVL  176 (670)
Q Consensus       168 ~~~i~~~~~  176 (670)
                      |+++++.+.
T Consensus       160 f~~l~~~i~  168 (173)
T d2fu5c1         160 FFTLARDIK  168 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-24  Score=200.60  Aligned_cols=163  Identities=20%  Similarity=0.346  Sum_probs=133.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      ...+||+|+|++|||||||+++|+++++...+. ++++.++....+...|....+.+||++|++.+..+  +..+++++|
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~--~~~~~~~~d   81 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--THAYYRDAH   81 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHH--HHHhhcCCc
Confidence            456999999999999999999999998765544 55566677667777766778889999999999888  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      ++++|||.+++.|+..+..|+..+......   ..|+++|+||+|+.++... .+++..+++.++++ ++++||++| ||
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gi  157 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLNV  157 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccCC---CceEEEEEeeechhhcccccHHHHHHHHHHcCCE-EEEEeCCCCcCH
Confidence            999999999999999999999888776543   5899999999999876443 77889999999986 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|+.|++.+.
T Consensus       158 ~e~f~~l~~~i~  169 (170)
T d2g6ba1         158 DLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC
Confidence            999999998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-25  Score=208.49  Aligned_cols=164  Identities=12%  Similarity=0.214  Sum_probs=137.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC----------CceEEEEEecCChhhHhhhhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG----------GNKKTLILQEIPEEGVKKILS  490 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g----------~~~~~~i~d~~g~~~~~~~~~  490 (670)
                      .+-+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++          ....+.+||++|++.+..+  
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~--   80 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL--   80 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH--
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH--
Confidence            3568999999999999999999999998877767766665555544432          2246778999999999988  


Q ss_pred             hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEE
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIP  569 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  569 (670)
                      +..+++++|++|+|||++++.+|+.+..|+..+.......  ..|+++|+||+|+...+ ...+++.+++++++++ +++
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~-~~e  157 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE--NPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFE  157 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEE
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCC--CceEEEEeeeccchhhhcchHHHHHHHHHHcCCE-EEE
Confidence            7889999999999999999999999999988776554433  68999999999997654 3477889999999985 999


Q ss_pred             eecccC-ChHHHHHHHHHHHh
Q 005908          570 VSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      +||++| ||+++|+.|++.+.
T Consensus       158 ~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         158 TSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999 99999999999875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.2e-25  Score=206.18  Aligned_cols=163  Identities=19%  Similarity=0.355  Sum_probs=116.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+|+|.+|||||||+++|+++.+...+.+|.+..+....+..+|+...+.+||++|++.+..+  +..+++.+|+
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--~~~~~~~~~~   81 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--TTAYYRGAMG   81 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHhccCCCE
Confidence            56799999999999999999999999887777778887888888888877788889999999999988  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      +|+|||++++.||..+..|...+......   +.|+++|+||+|+...+.. .+++..+++..+++ +++|||++| ||+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~gv~  157 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVE  157 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccC---CceEEEEEecccchhhcccHHHHHHHHHHhcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999888765543   5999999999999875444 66788889999987 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 005908          579 NVFSRIIWAAE  589 (670)
Q Consensus       579 ~l~~~l~~~~~  589 (670)
                      ++|++|++.+.
T Consensus       158 e~f~~l~~~i~  168 (173)
T d2fu5c1         158 NAFFTLARDIK  168 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.5e-24  Score=203.03  Aligned_cols=165  Identities=18%  Similarity=0.276  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|.+|||||||+++|+++.+...+.+|.+.+.....+...+......+||++|...+...  +..++..+|++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i~   80 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--GVAFYRGADCCVL   80 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--CCGGGTTCSEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccc--ccccccCccEEEE
Confidence            79999999999999999999999999888889888888888888877788889999999888777  7788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~  581 (670)
                      |+|.++..++..+..|+.++....... ..++|+++|+||+|+.+.+...+..++++...+..++++|||++| ||+++|
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999998887654321 125899999999999887777888888887766556999999999 999999


Q ss_pred             HHHHHHHhC
Q 005908          582 SRIIWAAEH  590 (670)
Q Consensus       582 ~~l~~~~~~  590 (670)
                      +++++.+.+
T Consensus       161 ~~l~~~i~~  169 (184)
T d1vg8a_         161 QTIARNALK  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=202.96  Aligned_cols=164  Identities=18%  Similarity=0.258  Sum_probs=136.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      .+.+||+++|++|||||||+++|+++++....+++.+...  ....+....+.+.+|||||++++..++..+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999998887555444332  34455566789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      +|||++++.+++.+.. |+..+.+..  ...|+++++||.|... +.+  ..+....+++.++  .++++|||++|.||+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v--~~~~~~~~~~~~~--~~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN-REV--DRNEGLKFARKHS--MLFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSS-CCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHH
T ss_pred             EEEECCCccccccchh-hhhhhcccccccceeeEEEeecccccc-ccc--cHHHHHHHHHHCC--CEEEEEeCCCCCCHH
Confidence            9999999999999885 888876543  4689999999999754 333  3445567788877  379999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 005908          166 DVFYYAQKAVLHPT  179 (670)
Q Consensus       166 ~l~~~i~~~~~~~~  179 (670)
                      ++|+++++.+++++
T Consensus       159 e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         159 CAFEELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHccCc
Confidence            99999999988653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-24  Score=201.19  Aligned_cols=159  Identities=16%  Similarity=0.261  Sum_probs=127.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+++|++|||||||+++|+++++.....++.+ ... ....+.+..+.+.+|||||++.+..++..+++++|++++||
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            7999999999999999999999998777443333 333 44556677889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~  170 (670)
                      |.+++.+++.+...+...........|+++++||.|+.....   ..+....+++.++  .++++|||++|.||+++|+.
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~e~f~~  157 (166)
T d1g16a_          83 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV---TADQGEALAKELG--IPFIESSAKNDDNVNEIFFT  157 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS---CHHHHHHHHHHHT--CCEEECBTTTTBSHHHHHHH
T ss_pred             ECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhh---hHHHHHHHHHhcC--CeEEEECCCCCCCHHHHHHH
Confidence            999999999998644444444556789999999999865433   3456677888876  37999999999999999999


Q ss_pred             HHHHHc
Q 005908          171 AQKAVL  176 (670)
Q Consensus       171 i~~~~~  176 (670)
                      +++.+.
T Consensus       158 l~~~i~  163 (166)
T d1g16a_         158 LAKLIQ  163 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.3e-25  Score=203.50  Aligned_cols=161  Identities=21%  Similarity=0.232  Sum_probs=124.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCC-eEeCCcccCCceeEEEEeCCCCccc-hhhhHHHhccCCEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLEN-KGKLNEELKRADAV   86 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~-~~~~~~~~~~ad~i   86 (670)
                      ..+||+++|++|||||||+++|++..+...  .+++... ......+++..+.+.+||+++.... ..+...+++++|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            358999999999999999999998775433  3333333 2244556677888899997753221 12456788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  164 (670)
                      |+|||++++.+++.+.. |...+...  .+++|+++||||+|+.+.+.+ .. +..+.+++.++  .++++|||++|.||
T Consensus        82 ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v-~~-~~~~~~a~~~~--~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          82 LIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-SV-SEGRACAVVFD--CKFIETSAAVQHNV  156 (172)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CH-HHHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred             eeeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccc-cH-HHHHHHHHHcC--CeEEEEeCCCCcCH
Confidence            99999999999999985 87777643  358999999999999887766 43 44577888876  37999999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+.+++.+.
T Consensus       157 ~~~f~~l~~~i~  168 (172)
T d2g3ya1         157 KELFEGIVRQVR  168 (172)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.9e-24  Score=200.04  Aligned_cols=156  Identities=19%  Similarity=0.315  Sum_probs=127.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchh-hhHHHhccCCEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVV   87 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ii   87 (670)
                      +-+||+++|++|||||||+++|++++|....+++.+...  ....+......+.+||++|...... .++.+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999998887555444333  4445566788899999999877654 4678999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc---CC
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MI  162 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---~~  162 (670)
                      +|||++++++++.+.. |+..+.+.  .+++|++|||||+|+.+.+.+  ..+.++.++++++.  ++++|||++   +.
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~SAkt~~~~~  155 (165)
T d1z06a1          81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHSM--PLFETSAKNPNDND  155 (165)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEECCSSSGGGGS
T ss_pred             EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhccch--hHHHHHHHHHHCCC--EEEEEecccCCcCc
Confidence            9999999999999875 77777653  358999999999999887766  34456788888873  799999997   55


Q ss_pred             CchHHHHHH
Q 005908          163 QVPDVFYYA  171 (670)
Q Consensus       163 gi~~l~~~i  171 (670)
                      ||+++|+.|
T Consensus       156 ~V~e~F~~l  164 (165)
T d1z06a1         156 HVEAIFMTL  164 (165)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHh
Confidence            999999876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.9e-25  Score=209.04  Aligned_cols=160  Identities=16%  Similarity=0.211  Sum_probs=129.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc----------CCceeEEEEeCCCCccchhhhHHH
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY----------PDRVPVTIIDTSSSLENKGKLNEE   79 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~~   79 (670)
                      -+||+|+|++|||||||+++|++++|.....++.....  ....+.          ...+++.+|||+|++++..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            58999999999999999999999998776433222211  111111          224679999999999999999999


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (670)
                      ++++|++|+|||++++.+++.+.. |...+...  .+.+|++||+||+|+...+.+  ..+.+..++++++  .++++||
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v--~~~e~~~~~~~~~--~~~~e~S  159 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYG--IPYFETS  159 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEEEB
T ss_pred             HhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhhhcc--hHHHHHHHHHHcC--CEEEEEe
Confidence            999999999999999999999884 87776543  357899999999999877766  3445678888886  3799999


Q ss_pred             cccCCCchHHHHHHHHHHc
Q 005908          158 ATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~~  176 (670)
                      |++|.||+++|+.+.+.+.
T Consensus       160 ak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         160 AATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             TTTTBTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999998765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.3e-24  Score=200.20  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+++|.+|||||||+++|+.+.+...+.||.... ....+...+....+.+||++|++.+..+  +..+++.+|++++
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~il   79 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDAVLI   79 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEECSSCEEEEEEEEECCSGGGTTT--GGGGCTTCSEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec-ccccccccceEEeecccccccccccccc--ccchhhhhhhhhe
Confidence            799999999999999999999999988887877654 4455667777888899999999988887  7789999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCCCCcEEe
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGIEPPIPV  570 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~~v  570 (670)
                      |||++++.||+.+..|+.........   +.|+++||||+|+..             .....++...++++++..+|++|
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~---~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~  156 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  156 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             eeecccCCCHHHHHHHHHHHHhccCC---cceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEE
Confidence            99999999999988766554443332   699999999999864             12347788899999998779999


Q ss_pred             ecccC-C-hHHHHHHHHHHHhC
Q 005908          571 SMKSK-D-LNNVFSRIIWAAEH  590 (670)
Q Consensus       571 SA~~g-~-v~~l~~~l~~~~~~  590 (670)
                      ||++| | ++++|+.+++.+.+
T Consensus       157 SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         157 SALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCcCHHHHHHHHHHHHhc
Confidence            99999 6 99999999988764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.91  E-value=1.8e-24  Score=200.16  Aligned_cols=161  Identities=12%  Similarity=0.131  Sum_probs=124.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +.+||+|+|++|||||||+++|.+..+....|+ .+....  .+..+++.+.+|||||++.+...+..+++.++++++||
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPT-LGFNIK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCC-SSEEEE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccce-Eeeeee--eccccccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            468999999999999999999998877554443 333222  34567899999999999988888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-Hhcc-CCeEEEeCcccCCCchHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QFRE-IETCVECSATTMIQVPDV  167 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~SA~~~~gi~~l  167 (670)
                      |+++..++......|...+... ..++|+++|+||+|+.+....   .+....+.. .... ..++++|||++|+||+++
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH---HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            9999999999887666666432 358999999999999765443   121122111 1111 126899999999999999


Q ss_pred             HHHHHHHHcC
Q 005908          168 FYYAQKAVLH  177 (670)
Q Consensus       168 ~~~i~~~~~~  177 (670)
                      |++|.+.+..
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999987653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.4e-24  Score=202.10  Aligned_cols=160  Identities=21%  Similarity=0.255  Sum_probs=129.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +||+|+|++|||||||+++|++++|...+.++.+...  .........+.+.+|||+|...+...+..++..+|++++||
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            7999999999999999999999998887655444433  34455566789999999999998888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908           91 ACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  165 (670)
                      |.+++.+++.+. .|++.+...     ..++|+++||||+|+.+.. +  ..+....+...... .++++|||++|.||+
T Consensus        83 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-~--~~~~~~~~~~~~~~-~~~~e~Sak~~~gI~  157 (184)
T d1vg8a_          83 DVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-V--ATKRAQAWCYSKNN-IPYFETSAKEAINVE  157 (184)
T ss_dssp             ETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-S--CHHHHHHHHHHTTS-CCEEECBTTTTBSHH
T ss_pred             cccchhhhhcch-hhHHHHHHHhccccccCCCEEEEEEeecccccc-h--hHHHHHHHHHHhcC-CeEEEEcCCCCcCHH
Confidence            999999999988 488777553     2368999999999987643 2  23333445544433 479999999999999


Q ss_pred             HHHHHHHHHHcC
Q 005908          166 DVFYYAQKAVLH  177 (670)
Q Consensus       166 ~l~~~i~~~~~~  177 (670)
                      ++|+++++.++.
T Consensus       158 e~f~~l~~~i~~  169 (184)
T d1vg8a_         158 QAFQTIARNALK  169 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.91  E-value=1.4e-24  Score=203.12  Aligned_cols=162  Identities=17%  Similarity=0.189  Sum_probs=121.8

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (670)
                      ....+.+||+++|++|||||||+|+|.++++....++.. .+..  .+...++.+.+||++|++.+...+..+++.+|++
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~-~~~~--~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG-FNIK--SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT-EEEE--EEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeee-eeEE--EeccCCeeEeEeeccccccchhHHHHHhhcccee
Confidence            345578999999999999999999999988755443322 2222  3445678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--ccCCeEEEeCcccCCC
Q 005908           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQ  163 (670)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~g  163 (670)
                      ++|||+++..++..+...|....... ..++|++||+||+|+.+....   ....+.+....  ....++++|||++|+|
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH---HHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            99999999999999886444444332 347999999999999865432   11111111111  1123689999999999


Q ss_pred             chHHHHHHHHH
Q 005908          164 VPDVFYYAQKA  174 (670)
Q Consensus       164 i~~l~~~i~~~  174 (670)
                      |+++|+++++.
T Consensus       165 v~e~~~~l~~~  175 (176)
T d1fzqa_         165 VQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.90  E-value=7.2e-24  Score=195.86  Aligned_cols=159  Identities=14%  Similarity=0.180  Sum_probs=122.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +++||+++|++|||||||+++|.++++.....++.+....  .+..+++.+.+||+||++.+...+..++..+|++++||
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeeeEEEEEeeccccccccccccccccccchhhccc
Confidence            3689999999999999999999999988775554443332  34456789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEEeCcccCCCchHH
Q 005908           91 ACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVECSATTMIQVPDV  167 (670)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~~~gi~~l  167 (670)
                      |+++..+++.....|...++. ..+++|++||+||+|+.+....   .+..+.+.....  ...++++|||++|.||+++
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          79 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH---HHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            999999999988644444443 2358999999999998754322   122222211111  1126899999999999999


Q ss_pred             HHHHHHH
Q 005908          168 FYYAQKA  174 (670)
Q Consensus       168 ~~~i~~~  174 (670)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=4.2e-24  Score=199.31  Aligned_cols=161  Identities=11%  Similarity=0.108  Sum_probs=122.2

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~   88 (670)
                      ..+.+||+++|++|||||||+++|+++.+....++....   ........+.+.+||+||+..+...+..+++.+|++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN---VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEE---EEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeee---EEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            356799999999999999999999988765544332211   22344567899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCch
Q 005908           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP  165 (670)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~  165 (670)
                      |||+++..++..+...|...++.. ..++|+++|+||+|+.+....   .+....+... .. ....+++|||++|+||+
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH---HHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999987555555532 358999999999999764322   1111221111 11 11268999999999999


Q ss_pred             HHHHHHHHHH
Q 005908          166 DVFYYAQKAV  175 (670)
Q Consensus       166 ~l~~~i~~~~  175 (670)
                      |+|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-23  Score=191.63  Aligned_cols=159  Identities=19%  Similarity=0.269  Sum_probs=127.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|.+|||||||+++|+++++... .+|+...+ .+.+..+|....+.+||++|+..+       .+++.+|++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-------~~~~~ad~~   74 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-------KFSGWADAV   74 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-------HHHHHCSEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-------cccccccee
Confidence            469999999999999999999999988653 35555544 466677877778889999997543       367889999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc---ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT---MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~vSA~~g-~v  577 (670)
                      |+|||++++.||+.+..|+..+.........+.|+++|+||.|+....   ...++++.++......+|++|||++| |+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            999999999999999999999877654333368999999999986532   23667778876654445999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 005908          578 NNVFSRIIWAAE  589 (670)
Q Consensus       578 ~~l~~~l~~~~~  589 (670)
                      +++|..+++.+.
T Consensus       155 ~~~F~~l~~~i~  166 (175)
T d2bmja1         155 DRVFQEVAQKVV  166 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.89  E-value=5.2e-24  Score=200.45  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=119.0

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii   87 (670)
                      ...+.+||+++|++|||||||+++|.++.+....|+.... .  ......++++.+||++|++.+...+..+++.+|+++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~-~--~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN-V--ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC-E--EEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceE-E--EEEeeCCEEEEEEecccccccchhHHhhhccceeEE
Confidence            4567899999999999999999999888765544432222 2  133456789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-c-cCCeEEEeCcccCCCc
Q 005908           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQV  164 (670)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~~~gi  164 (670)
                      +|||++++.++......|...++.. ..++|+++|+||+|+.+....   .+..+.+.... . ...++++|||++|+||
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCH---HHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            9999999999999886444545443 347999999999999754322   12111111111 1 1126899999999999


Q ss_pred             hHHHHHHHHHHc
Q 005908          165 PDVFYYAQKAVL  176 (670)
Q Consensus       165 ~~l~~~i~~~~~  176 (670)
                      +++|+++.+.+.
T Consensus       167 ~e~~~~l~~~i~  178 (182)
T d1moza_         167 TEGLDWLIDVIK  178 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.89  E-value=1.4e-22  Score=187.15  Aligned_cols=156  Identities=18%  Similarity=0.252  Sum_probs=123.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      ++||+++|++|||||||+++|.++++...+.||.+..+  ..++.  +...+.+||++|++.+...  +..++..+|+++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i   75 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITK--GNVTIKLWDIGGQPRFRSM--WERYCRGVSAIV   75 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEE--TTEEEEEEEECCSHHHHTT--HHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeee--eeEEEEEeecccccccccc--ccccccccchhh
Confidence            58999999999999999999999998877777766433  33443  4578889999999888887  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH----HhCCCCcEEeecccC-Ch
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ----ELGIEPPIPVSMKSK-DL  577 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~vSA~~g-~v  577 (670)
                      +|||+++..+|.....|+..+.......  +.|+++|+||.|+.+.....+..+.+..    ..++ +++++||++| |+
T Consensus        76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~e~Sa~~g~gv  152 (164)
T d1zd9a1          76 YMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI-CCYSISCKEKDNI  152 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTH
T ss_pred             cccccccccccchhhhhhhhhhhhhccc--CCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCC-EEEEEeCcCCcCH
Confidence            9999999999999999888876654433  7999999999998764332222222211    1122 4899999999 99


Q ss_pred             HHHHHHHHHH
Q 005908          578 NNVFSRIIWA  587 (670)
Q Consensus       578 ~~l~~~l~~~  587 (670)
                      +++|++|++.
T Consensus       153 ~e~~~~l~~~  162 (164)
T d1zd9a1         153 DITLQWLIQH  162 (164)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.88  E-value=1e-22  Score=190.33  Aligned_cols=163  Identities=21%  Similarity=0.246  Sum_probs=124.1

Q ss_pred             hcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhc
Q 005908          416 KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL  495 (670)
Q Consensus       416 ~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~  495 (670)
                      .....++.+||+++|++|||||||+|+|.++++...+ ++.  .+....++..  ...+.+||++|++.+...  +..++
T Consensus         9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~--~~~~~~i~~~--~~~~~i~d~~g~~~~~~~--~~~~~   81 (176)
T d1fzqa_           9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQ--GFNIKSVQSQ--GFKLNVWDIGGQRKIRPY--WRSYF   81 (176)
T ss_dssp             CSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EET--TEEEEEEEET--TEEEEEEECSSCGGGHHH--HHHHH
T ss_pred             hhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eee--eeeEEEeccC--CeeEeEeeccccccchhH--HHHHh
Confidence            3345567899999999999999999999998876443 232  2444555544  467888999999988887  78899


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh---CCCCcEEeec
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL---GIEPPIPVSM  572 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~vSA  572 (670)
                      +.+|++++|||+++..++.....++..+.......  ++|+++|+||+|+.+........+.+....   ...+++++||
T Consensus        82 ~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~--~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  159 (176)
T d1fzqa_          82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA  159 (176)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGT--TCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred             hccceeEEeeccccccchhhhhhhhhhhhhhhccC--CCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            99999999999999999999998888776554443  699999999999987433222222211111   1124899999


Q ss_pred             ccC-ChHHHHHHHHHH
Q 005908          573 KSK-DLNNVFSRIIWA  587 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~  587 (670)
                      ++| |++++|++|++.
T Consensus       160 ~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         160 LTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             TTCTTHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            999 999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.88  E-value=7.2e-22  Score=182.39  Aligned_cols=159  Identities=19%  Similarity=0.207  Sum_probs=120.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+|+|++|||||||+++|.+..+.. ..+|.+  .....++.  +...+.+||++|++.++..  +..+++.+++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i   74 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEH--RGFKLNIWDVGGQKSLRSY--WRNYFESTDGLI   74 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSS-CCCCSS--EEEEEEEE--TTEEEEEEEECCSHHHHTT--GGGGCTTCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCc-ccceEe--eeeeeccc--cccceeeeecCcchhhhhH--HHhhhhhhhcce
Confidence            5899999999999999999999887643 335554  33344443  4578889999999988887  788999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH-HhCC--CCcEEeecccC-ChH
Q 005908          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-ELGI--EPPIPVSMKSK-DLN  578 (670)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~--~~~~~vSA~~g-~v~  578 (670)
                      +|||+++..++.....++..........  +.|+++|+||+|+.+.....+....+.. ....  .++++|||++| |++
T Consensus        75 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  152 (165)
T d1ksha_          75 WVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  152 (165)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eeeecccchhHHHHHHhhhhhhhhcccC--CCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHH
Confidence            9999999999988888777665443333  7999999999999764433333222211 1111  14899999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      ++|++|++.+..
T Consensus       153 e~~~~l~~~i~~  164 (165)
T d1ksha_         153 PGIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999988754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.87  E-value=5.1e-22  Score=182.10  Aligned_cols=155  Identities=12%  Similarity=0.149  Sum_probs=119.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~   92 (670)
                      +||+|+|++|||||||+++|+++++....+......   .......+.+.+||++|...+......+++.++++++++|+
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~   77 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE---EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE---EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEe
Confidence            699999999999999999999998866544433222   24456788999999999999888899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhH----HHHHhccCCeEEEeCcccCCCchHH
Q 005908           93 NQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGP----IMQQFREIETCVECSATTMIQVPDV  167 (670)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~SA~~~~gi~~l  167 (670)
                      +++.++..+...+.+.+... ...+|+++++||+|+.+....   .+....    +++..+  .++++|||++|+||+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~---~~i~~~~~~~~~~~~~--~~~~~~SAktg~gi~e~  152 (160)
T d1r8sa_          78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRN--WYIQATCATSGDGLYEG  152 (160)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCC--EEEEECBTTTTBTHHHH
T ss_pred             cChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccH---HHHHHHHHHHHHhhCC--CEEEEeECCCCCCHHHH
Confidence            99999999886444444332 347899999999998765322   111111    111122  37999999999999999


Q ss_pred             HHHHHHHH
Q 005908          168 FYYAQKAV  175 (670)
Q Consensus       168 ~~~i~~~~  175 (670)
                      |++|.+.+
T Consensus       153 ~~~l~~~l  160 (160)
T d1r8sa_         153 LDWLSNQL  160 (160)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.87  E-value=3.2e-22  Score=188.05  Aligned_cols=158  Identities=20%  Similarity=0.194  Sum_probs=118.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (670)
                      .++.+||+++|.+|||||||+++|.++.+.... +|.+...  ..++.  ....+.+||++|++.+..+  +..++..+|
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~--~~~~~~~~~   86 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV--ETLSY--KNLKLNVWDLGGQTSIRPY--WRCYYADTA   86 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCE--EEEEE--TTEEEEEEEEC----CCTT--GGGTTTTEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEE--EEEee--CCEEEEEEecccccccchh--HHhhhccce
Confidence            456799999999999999999999988775443 4544333  23333  4577889999999888887  788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeec
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSM  572 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA  572 (670)
                      ++++|+|++++.++.....|+..+.......  +.|+++|+||+|+.+....    +++.+.++.       .++++|||
T Consensus        87 ~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~--~~piliv~NK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          87 AVIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGALSA----SEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCCCH----HHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             eEEEEeeecccccchhHHHHHHHHHHhhccC--CcceEEEEEeeccccccCH----HHHHHHHHHHHHhhCCCEEEEEEC
Confidence            9999999999999999888887765544333  6999999999999763222    222222221       14899999


Q ss_pred             ccC-ChHHHHHHHHHHHhC
Q 005908          573 KSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       573 ~~g-~v~~l~~~l~~~~~~  590 (670)
                      ++| ||+++|++|++.+.+
T Consensus       161 ~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            999 999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.3e-21  Score=183.05  Aligned_cols=161  Identities=23%  Similarity=0.191  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHHhcc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKR   82 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~   82 (670)
                      -+|+|+|.+|||||||+|+|++.+...  ..+++.... ........+..+.+|||||.......        ...++++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~-~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~   84 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR-LRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD   84 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC-EEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCccccc-ccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence            379999999999999999999987432  233322221 12233455788999999998654322        2356789


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      ||++|+|+|++++.+...  ..|.+.++....++|+++|+||+|+...     .++..+.+.+.++. ..++++||++|.
T Consensus        85 ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~-~~~~~iSA~~~~  156 (178)
T d1wf3a1          85 VNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-----PEEAMKAYHELLPE-AEPRMLSALDER  156 (178)
T ss_dssp             CSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-----HHHHHHHHHHTSTT-SEEEECCTTCHH
T ss_pred             ccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-----HHHHHHHHHhhccc-CceEEEecCCCC
Confidence            999999999988765544  3478888877778999999999998653     23344555555553 478999999999


Q ss_pred             CchHHHHHHHHHHcCCCCCCC
Q 005908          163 QVPDVFYYAQKAVLHPTAPLF  183 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~~~~~~  183 (670)
                      ||++|++.|.+.+. +.+++|
T Consensus       157 gi~~L~~~i~~~lp-e~p~~~  176 (178)
T d1wf3a1         157 QVAELKADLLALMP-EGPFFY  176 (178)
T ss_dssp             HHHHHHHHHHTTCC-BCCCSS
T ss_pred             CHHHHHHHHHHhCC-CCCCCC
Confidence            99999999988664 234444

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=182.67  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=118.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+++|++|||||||+++|.++.+.... +|.+  ........  ....+.+||++|...++..  +..+++.+|+
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~--~~~~~~~~--~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~   82 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQG   82 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETT--EEEEEEEE--TTEEEEEEEESCCGGGHHH--HGGGTTTCCE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceee--eeEEEeec--cceeeEEecCCCcchhhhH--HHhhhcccce
Confidence            45699999999999999999999988764432 3333  22233322  4577889999999888887  7889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH----HHhCCCCcEEeecccC-
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-  575 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g-  575 (670)
                      +++|+|+++..++..+..|+....+.....  +.|+++|+||+|+.+.....+....+.    +..++ +++++||++| 
T Consensus        83 ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~--~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~e~SA~tg~  159 (173)
T d1e0sa_          83 LIFVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW-YVQPSCATSGD  159 (173)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECBTTTTB
T ss_pred             EEEEEecccchhHHHHHHHHHHHhhhcccc--cceeeeeeecccccccccHHHHHHHHHHHHHHhCCC-EEEEeeCCCCc
Confidence            999999999999999988887766543333  699999999999976433222222221    11122 3889999999 


Q ss_pred             ChHHHHHHHHHHH
Q 005908          576 DLNNVFSRIIWAA  588 (670)
Q Consensus       576 ~v~~l~~~l~~~~  588 (670)
                      ||+++|++|.+.+
T Consensus       160 gv~e~~~~l~~~~  172 (173)
T d1e0sa_         160 GLYEGLTWLTSNY  172 (173)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.84  E-value=7.7e-21  Score=177.44  Aligned_cols=160  Identities=12%  Similarity=0.117  Sum_probs=116.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+.+||+|+|.+|||||||+++|.++++....++....   .......+..+.+||+++.+.....+..++..++++++|
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN---VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS---CEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccccee---EEEEeecceEEEEeccccccccccchhhhhccceeeeee
Confidence            56799999999999999999999999876554432211   123344578999999999999889999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--ccCCeEEEeCcccCCCchH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPD  166 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|.++..++......+...... ...+.|+++|+||+|+......   .+....+....  ....++++|||++|+||++
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH---HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            9999999998876433333322 2358999999999998765432   12222221111  1123799999999999999


Q ss_pred             HHHHHHHHH
Q 005908          167 VFYYAQKAV  175 (670)
Q Consensus       167 l~~~i~~~~  175 (670)
                      +++++.+.+
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.83  E-value=2.2e-20  Score=170.98  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=118.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll  503 (670)
                      +||+|+|++|||||||+|+|.++++...+..+...   ....+  +....+.+||++|...+...  ...+++.++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i~   73 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVE--YKNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF   73 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEEE--CSSCEEEEEECCCCGGGHHH--HHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEEe--eeeEEEEEecCCCcccchhh--hhhhhccceeEEE
Confidence            58999999999999999999998876654333222   12222  25677888999999887776  7889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHH----HHHHHhCCCCcEEeecccC-ChH
Q 005908          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----RVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      ++|.+++.++.....|+.++.......  ..|+++++||.|+.+.....+...    .+++..++ +++++||++| |++
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~SAktg~gi~  150 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW-YIQATCATSGDGLY  150 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHH
T ss_pred             EEEecChHHHHHHHHHHHHHHHhhccc--CceEEEEeecccccccccHHHHHHHHHHHHHhhCCC-EEEEeECCCCCCHH
Confidence            999999999999999888887655444  689999999999887433222211    12222333 4899999999 999


Q ss_pred             HHHHHHHHHH
Q 005908          579 NVFSRIIWAA  588 (670)
Q Consensus       579 ~l~~~l~~~~  588 (670)
                      ++|++|.+.+
T Consensus       151 e~~~~l~~~l  160 (160)
T d1r8sa_         151 EGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=6.3e-21  Score=175.18  Aligned_cols=150  Identities=25%  Similarity=0.336  Sum_probs=113.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHHhc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELK   81 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~   81 (670)
                      .+||+++|++|||||||+|+|++.+..  ...+++... .+...+...+..+.++|++|..+....        ...+++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCS-CEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccc-eEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHH
Confidence            379999999999999999999987743  334443222 233455566789999999997654322        236678


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      .+|++++++|..+..+++... .|...++....++|+++|+||+|+......  ..        +.+. .+++++||++|
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~--~~--------~~~~-~~~~~iSAk~~  147 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAE-IWPEFIARLPAKLPITVVRNKADITGETLG--MS--------EVNG-HALIRLSARTG  147 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHH-HCHHHHHHSCTTCCEEEEEECHHHHCCCCE--EE--------EETT-EEEEECCTTTC
T ss_pred             hccccceeeccccccchhhhh-hhhhhhhhcccccceeeccchhhhhhhHHH--HH--------HhCC-CcEEEEECCCC
Confidence            999999999999888777766 367777777678999999999998765332  11        1222 37999999999


Q ss_pred             CCchHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKA  174 (670)
Q Consensus       162 ~gi~~l~~~i~~~  174 (670)
                      .||++++++|.+.
T Consensus       148 ~gi~~L~~~l~~~  160 (161)
T d2gj8a1         148 EGVDVLRNHLKQS  160 (161)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=3.1e-20  Score=173.56  Aligned_cols=159  Identities=18%  Similarity=0.163  Sum_probs=111.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHhh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEA  494 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~~  494 (670)
                      +.-.|+|+|.+|||||||+|+|++.+...++. +.+............  ...+.++|++|......      ......+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeecccccccccccccchhcccccccc
Confidence            34579999999999999999999987665544 322223333333333  35677899998522111      1114567


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (670)
Q Consensus       495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  574 (670)
                      +.+||++|+|+|++++.+.. ...|...+.....    ++|+++|+||+|+.+..  .+..+.+.+.++...++++||++
T Consensus        82 ~~~ad~il~v~D~~~~~~~~-~~~i~~~l~~~~~----~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPE-DELVARALKPLVG----KVPILLVGNKLDAAKYP--EEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHH-HHHHHHHHGGGTT----TSCEEEEEECGGGCSSH--HHHHHHHHHTSTTSEEEECCTTC
T ss_pred             cccccceeeeechhhhhccc-ccchhhheecccc----chhhhhhhcccccccCH--HHHHHHHHhhcccCceEEEecCC
Confidence            88999999999999876533 3444455444332    58999999999997642  33445566666666789999999


Q ss_pred             C-ChHHHHHHHHHHHh
Q 005908          575 K-DLNNVFSRIIWAAE  589 (670)
Q Consensus       575 g-~v~~l~~~l~~~~~  589 (670)
                      | |+++|++.|.+.++
T Consensus       155 ~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         155 ERQVAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9 99999999998774

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.82  E-value=7.5e-20  Score=168.82  Aligned_cols=162  Identities=13%  Similarity=0.123  Sum_probs=123.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      .+.+||+|||++|||||||+++|+++++....++..   ........+++.+.+||++|...........+..+++++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG---FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS---EEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccc---eeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            467999999999999999999999999876544322   22234445678999999999998888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--ccCCeEEEeCcccCCCchH
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPD  166 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~~  166 (670)
                      +|+++..++......+...++. .....|+++|+||.|+......   .+....+...+  ....++++|||++|.||++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  156 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGTGLDE  156 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH---HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence            9999998888877655555543 2357899999999999865432   12222222111  1123799999999999999


Q ss_pred             HHHHHHHHHcC
Q 005908          167 VFYYAQKAVLH  177 (670)
Q Consensus       167 l~~~i~~~~~~  177 (670)
                      +|++|.+.+..
T Consensus       157 ~~~~l~~~l~~  167 (169)
T d1upta_         157 AMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.81  E-value=2.8e-20  Score=173.92  Aligned_cols=164  Identities=15%  Similarity=0.141  Sum_probs=113.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-e------EeCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T------RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (670)
                      .+.++|+|+|++|+|||||+|+|++.......+..... .      .....+...+..+.++|++|+.++...+...+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            46789999999999999999999975532221111101 0      0122333567889999999999888888899999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEEEeCccc
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATT  160 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~SA~~  160 (670)
                      +|++++|+|+++.......  .....+...  ++|+++|+||+|+..........+..+.+.+....  ..++++|||++
T Consensus        83 ~d~~ilv~d~~~g~~~~~~--~~~~~~~~~--~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchhhh--hhhhhhhhc--CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            9999999999886544432  244556665  89999999999997653321122233333333221  13789999999


Q ss_pred             CCCchHHHHHHHHHHcC
Q 005908          161 MIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~  177 (670)
                      |+|+++|++.|.+.+..
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999887654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.80  E-value=4.6e-19  Score=165.19  Aligned_cols=160  Identities=17%  Similarity=0.144  Sum_probs=113.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++.+||+|+|.+|||||||+++|.+.++..... +......  ....  ....+.++|..+.+.....  ....+..+++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~   85 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNVE--EIVI--NNTRFLMWDIGGQESLRSS--WNTYYTNTEF   85 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSSCE--EEEE--TTEEEEEEECCC----CGG--GHHHHTTCCE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccceeEE--EEee--cceEEEEeccccccccccc--hhhhhcccee
Confidence            456999999999999999999999988775543 2222221  1222  3456777999888777766  7788899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC---CCCcEEeecccC-C
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG---IEPPIPVSMKSK-D  576 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~vSA~~g-~  576 (670)
                      +++|+|.++..++.....+...........  +.|+++|+||+|+.......+..+.+....-   -.+++++||++| |
T Consensus        86 ~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~G  163 (177)
T d1zj6a1          86 VIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG  163 (177)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT
T ss_pred             eeeecccccccchhhhhhhhhhhhhccccc--ceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCC
Confidence            999999999999988777666655444333  7999999999998764332222222211111   115899999999 9


Q ss_pred             hHHHHHHHHHHHh
Q 005908          577 LNNVFSRIIWAAE  589 (670)
Q Consensus       577 v~~l~~~l~~~~~  589 (670)
                      +++++++|.+.+.
T Consensus       164 i~e~~~~L~~~lk  176 (177)
T d1zj6a1         164 LCQGLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.9e-20  Score=168.09  Aligned_cols=152  Identities=17%  Similarity=0.176  Sum_probs=108.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCCh------hhHhhhhchHhhc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPE------EGVKKILSNKEAL  495 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~------~~~~~~~~~~~~~  495 (670)
                      .+||+++|++|||||||+|+|++.+...++. +++........+...  ...+.++|++|.      .....+.++..++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc--CceeeeccccccccccccchhHHHHHHHHHH
Confidence            3799999999999999999999988765544 333222222333333  345667887773      1222233356778


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      ..+|++++++|..+..++.....|...+.....    +.|+++|+||+|+.+......       +.+..+++++||++|
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~iilv~NK~Dl~~~~~~~~-------~~~~~~~~~iSAk~~  147 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA----KLPITVVRNKADITGETLGMS-------EVNGHALIRLSARTG  147 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT----TCCEEEEEECHHHHCCCCEEE-------EETTEEEEECCTTTC
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhhhccc----ccceeeccchhhhhhhHHHHH-------HhCCCcEEEEECCCC
Confidence            999999999999998877766666555554432    699999999999876443321       123336999999999


Q ss_pred             -ChHHHHHHHHHH
Q 005908          576 -DLNNVFSRIIWA  587 (670)
Q Consensus       576 -~v~~l~~~l~~~  587 (670)
                       |+++|+++|.+.
T Consensus       148 ~gi~~L~~~l~~~  160 (161)
T d2gj8a1         148 EGVDVLRNHLKQS  160 (161)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh
Confidence             999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1e-18  Score=160.25  Aligned_cols=153  Identities=14%  Similarity=0.255  Sum_probs=113.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   93 (670)
                      ||+++|++|||||||+|+|+++.+....|+ ...+..  .....+....+||++|...+......+++.++++++++|.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPT-WHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA   78 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCC-CSCEEE--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeece-eeEeEE--EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecccc
Confidence            899999999999999999999988665443 333332  34455678999999999988888999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHH-------HHhc--cCCeEEEeCcccCC
Q 005908           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-------QQFR--EIETCVECSATTMI  162 (670)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~SA~~~~  162 (670)
                      +..++..... |.......  ..+.|+++++||.|+......   .+..+.+.       ....  ...++++|||++|+
T Consensus        79 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          79 DPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNAVSE---AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             CGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSCCCH---HHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             chhhhhhhhH-HHHhhhhhhccCCceEEEEeccccccccCCH---HHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999888875 44444332  347999999999998764322   11111110       0000  11268999999999


Q ss_pred             CchHHHHHHHH
Q 005908          163 QVPDVFYYAQK  173 (670)
Q Consensus       163 gi~~l~~~i~~  173 (670)
                      ||+|+|+++.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999998853

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.79  E-value=1.7e-18  Score=159.56  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=119.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|++|||||||+|+|+++++.... +|.+.  .......  +...+.+++..+.+.....  ....+..++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   76 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF--NVETVTY--KNLKFQVWDLGGLTSIRPY--WRCYYSNTDAV   76 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE--EEEEEEE--TTEEEEEEEECCCGGGGGG--GGGGCTTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce--eeeeecc--CceEEEEeecccccccccc--chhhhhhhhhh
Confidence            4589999999999999999999999886543 33332  2222332  4456777888888777776  67788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH----hCCCCcEEeecccC-C
Q 005908          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGIEPPIPVSMKSK-D  576 (670)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g-~  576 (670)
                      ++++|+.+..++.....+...........  ..|+++|+||.|+.......+....+...    .++ ++++|||++| |
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~SA~~g~g  153 (169)
T d1upta_          77 IYVVDSCDRDRIGISKSELVAMLEEEELR--KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKGTG  153 (169)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTCTT
T ss_pred             hhhhhhhhcchhhhccchhhhhhhhhccc--cceEEEEEeeccccccccHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCC
Confidence            99999999888888877766655444333  68999999999998755443333333222    222 5899999999 9


Q ss_pred             hHHHHHHHHHHHhC
Q 005908          577 LNNVFSRIIWAAEH  590 (670)
Q Consensus       577 v~~l~~~l~~~~~~  590 (670)
                      |+++|++|.+.+.+
T Consensus       154 v~e~~~~l~~~l~~  167 (169)
T d1upta_         154 LDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=2.2e-19  Score=168.02  Aligned_cols=158  Identities=19%  Similarity=0.165  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch-------hhhHHHhccCCE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRADA   85 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~   85 (670)
                      .|+|+|++|||||||+|+|++...... .++..............+..+.+|||||.....       ......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            499999999999999999998764322 233222222333444567789999999964321       123366788999


Q ss_pred             EEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           86 VVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        86 ii~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      +++++|.....  +..... .|+........++|+++|+||+|+...+..    +.........+  .+++++||++|.|
T Consensus        83 ~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~----~~~~~~~~~~~--~~~~~iSA~tg~g  155 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLR-KEVGAYDPALLRRPSLVALNKVDLLEEEAV----KALADALAREG--LAVLPVSALTGAG  155 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHH-HHHHHHCHHHHHSCEEEEEECCTTSCHHHH----HHHHHHHHTTT--SCEEECCTTTCTT
T ss_pred             hhhhcccccccccchhhhh-hhhhccccccchhhhhhhhhhhhhhhHHHH----HHHHHHHHhcC--CeEEEEEcCCCCC
Confidence            99999976532  222222 133322222236899999999999764322    12222222222  3799999999999


Q ss_pred             chHHHHHHHHHHcCC
Q 005908          164 VPDVFYYAQKAVLHP  178 (670)
Q Consensus       164 i~~l~~~i~~~~~~~  178 (670)
                      |++|++.|.+.+...
T Consensus       156 id~L~~~i~~~l~~~  170 (180)
T d1udxa2         156 LPALKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999998887543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=4.7e-19  Score=166.62  Aligned_cols=163  Identities=17%  Similarity=0.179  Sum_probs=111.4

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch-----------
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-----------   73 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   73 (670)
                      +...+.+||+|+|++|||||||+|+|++.+.  ....+++. .......+..++..+.++||||.....           
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT-RDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccc-cccceeeeccCCceeeeeccCCccccccccccccccch
Confidence            3445679999999999999999999998763  23333211 112233455667889999999975322           


Q ss_pred             -hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cC
Q 005908           74 -GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EI  150 (670)
Q Consensus        74 -~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~  150 (670)
                       .....+++.+|++++|+|++.....+..  .+...++..  ++|+|+|+||+|+...... ..++..+.+.....  ..
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~~~~~--~~~~~~~~~--~~~~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTT
T ss_pred             hHHHHHHHhcCCEEEEeecccccchhhHH--HHHHHHHHc--CCceeeeccchhhhcchhh-hhhhHHHHHHHHhcccCC
Confidence             2334667899999999998776554432  367777766  7899999999998765443 23333333333322  23


Q ss_pred             CeEEEeCcccCCCchHHHHHHHHHH
Q 005908          151 ETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       151 ~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      .+++++||++|.||++|++.|.+.+
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999987654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.79  E-value=6e-19  Score=164.68  Aligned_cols=159  Identities=14%  Similarity=0.161  Sum_probs=106.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceE-------EEEEEcCCCceEEEEEecCChhhHhhhhchHhh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-------VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA  494 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~-------~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~  494 (670)
                      +.++|+|+|++|+|||||+|+|++.......+.++.....       ...+..  ....+.++|++|+..+...  +...
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~--~~~~   79 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRA--VVSA   79 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHH--HHHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc--CCccccccccccccccccc--hhhh
Confidence            4589999999999999999999976544433322111111       111222  3355667999998877766  6778


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHh-C--CCCcE
Q 005908          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL-G--IEPPI  568 (670)
Q Consensus       495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~-~--~~~~~  568 (670)
                      +..+|++++|+|++++...+. ......+...      ++|+++|+||+|+.+....   .+..+++.+.. +  ..|++
T Consensus        80 l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~~------~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  152 (179)
T d1wb1a4          80 ADIIDLALIVVDAKEGPKTQT-GEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  152 (179)
T ss_dssp             TTSCCEEEEEEETTTCSCHHH-HHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             hhhccccccccccccccchhh-hhhhhhhhhc------CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence            899999999999999865443 3333444443      7999999999999874322   12222333322 2  23689


Q ss_pred             EeecccC-ChHHHHHHHHHHHhCC
Q 005908          569 PVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       569 ~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ++||++| |+++|++.|.+.+.++
T Consensus       153 ~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         153 PISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEEccCCcCHHHHHHHHHhcCCcc
Confidence            9999999 9999999999988754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=7.8e-19  Score=164.20  Aligned_cols=161  Identities=22%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh----Hhh-hhchHhhccccc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK-ILSNKEALASCD  499 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~-~~~~~~~~~~ad  499 (670)
                      .|+|+|++|||||||+|+|++........+..+....+...... ....+.+||++|...    .+. ..+....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeec-CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            49999999999999999999987665554444444444445554 455677899999321    111 122456778999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~  578 (670)
                      ++++++|+.... +.....+...+....... .++|+++|+||+|+..++... ...+.....+. +++++||++| |++
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~~~-~~~~~~~~~~~-~~~~iSA~tg~gid  157 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEAVK-ALADALAREGL-AVLPVSALTGAGLP  157 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHHHH-HHHHHHHTTTS-CEEECCTTTCTTHH
T ss_pred             hhhhhccccccc-ccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHHHH-HHHHHHHhcCC-eEEEEEcCCCCCHH
Confidence            999999987642 233443333332211000 058999999999998744332 23333333444 5999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 005908          579 NVFSRIIWAAEH  590 (670)
Q Consensus       579 ~l~~~l~~~~~~  590 (670)
                      +|++.|.+.+..
T Consensus       158 ~L~~~i~~~l~~  169 (180)
T d1udxa2         158 ALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.9e-19  Score=163.69  Aligned_cols=148  Identities=18%  Similarity=0.194  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccc---------hhhhHHHhc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------KGKLNEELK   81 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~   81 (670)
                      +||+++|++|||||||+|+|++.+.  ....+++. .......+...+..+.+|||||....         .......+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS-SCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeecccccc-ccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            6999999999999999999998763  23333322 12234445567889999999995321         122334578


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  161 (670)
                      .+|++++|+|++++...+...  +...+    ...|+++++||+|+.+....       +.+...++...+++++||++|
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~--~~~~~----~~~~~i~~~~k~d~~~~~~~-------~~~~~~~~~~~~~~~vSA~~g  146 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEKINE-------EEIKNKLGTDRHMVKISALKG  146 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCCCCH-------HHHHHHHTCSTTEEEEEGGGT
T ss_pred             hCCEEEEEEeCCCCcchhhhh--hhhhc----ccccceeeeeeccccchhhh-------HHHHHHhCCCCcEEEEECCCC
Confidence            899999999999887765443  22222    36789999999999764322       234444554457999999999


Q ss_pred             CCchHHHHHHHHH
Q 005908          162 IQVPDVFYYAQKA  174 (670)
Q Consensus       162 ~gi~~l~~~i~~~  174 (670)
                      .||++|++.|.+.
T Consensus       147 ~gi~~L~~~I~ke  159 (160)
T d1xzpa2         147 EGLEKLEESIYRE  159 (160)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999988764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.77  E-value=1.2e-18  Score=163.41  Aligned_cols=158  Identities=15%  Similarity=0.257  Sum_probs=111.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      ++..||++||++|||||||+++|+++.+....++......   .+...+..+.+||+.+...+........+..++++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE---EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee---EEEecccccccccccchhhhhhHHhhhhcccceeeee
Confidence            5679999999999999999999999987665554333222   2334567899999999998888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh---------------ccCCeE
Q 005908           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---------------REIETC  153 (670)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  153 (670)
                      +|+++...+......+...... ...++|+++++||.|+......    ..+.......               ....++
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE----ERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH----HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCH----HHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999999988877655555432 3468999999999998754222    1111111100               001258


Q ss_pred             EEeCcccCCCchHHHHHHHHH
Q 005908          154 VECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       154 ~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      ++|||++|+||+|+|+++.+.
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHh
Confidence            999999999999999998864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=7.4e-19  Score=165.24  Aligned_cols=161  Identities=16%  Similarity=0.208  Sum_probs=102.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhhHhh----------h
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------I  488 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----------~  488 (670)
                      +..+||+|+|.+|||||||+|+|++.....+..  .++.. .....+...  ...+.++|++|......          .
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD-PVDDEVFID--GRKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEET--TEEEEESSCSCC-----------CCSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccc-cceeeeccC--CceeeeeccCCccccccccccccccchh
Confidence            346999999999999999999999987654333  22222 111122222  12344455555321110          1


Q ss_pred             hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHH-HHHH---hC
Q 005908          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSAR-VTQE---LG  563 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~-~~~~---~~  563 (670)
                      ......++.+|++++|+|++.+.. .....+...+...      +.|+|+|+||+|+...... ..+..+ +.+.   .+
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~------~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID  155 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc------CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccC
Confidence            114566789999999999998755 3345555555544      6999999999998764432 222222 2222   34


Q ss_pred             CCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908          564 IEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       564 ~~~~~~vSA~~g-~v~~l~~~l~~~~~~~  591 (670)
                      ..|++++||++| |+++|++.|.+.+..+
T Consensus       156 ~~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         156 YSPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             TSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            557999999999 9999999998877643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.2e-18  Score=161.35  Aligned_cols=154  Identities=18%  Similarity=0.160  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch---------hhhHHHhcc
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELKR   82 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~   82 (670)
                      +|+|+|++|||||||+|+|++....  ...+++.. ......+......+.++|++|.....         .....++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTR-DPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceee-ccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            6999999999999999999987643  22332111 11233455667889999999964321         122356789


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (670)
Q Consensus        83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  162 (670)
                      +|++++++|.+.......  .++...++..  ++|+|+|+||+|+..+..    .+....+ .+.+ ..+++++||++|.
T Consensus        81 ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~~----~~~~~~~-~~~~-~~~~i~iSAk~g~  150 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREFE----REVKPEL-YSLG-FGEPIPVSAEHNI  150 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHHH----HHTHHHH-GGGS-SCSCEECBTTTTB
T ss_pred             CcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhhh----hHHHHHH-HhcC-CCCeEEEecCCCC
Confidence            999999999877665544  3477888877  789999999999864211    1111222 2233 2367999999999


Q ss_pred             CchHHHHHHHHHHcCC
Q 005908          163 QVPDVFYYAQKAVLHP  178 (670)
Q Consensus       163 gi~~l~~~i~~~~~~~  178 (670)
                      ||++++++|.+.+...
T Consensus       151 gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         151 NLDTMLETIIKKLEEK  166 (171)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCCCC
Confidence            9999999999877543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4.9e-19  Score=167.61  Aligned_cols=159  Identities=16%  Similarity=0.157  Sum_probs=115.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +++||+++|+.|||||||++||..+.+.+.    .   .....+....+++.+|||+|++.+...+..+++.++++++|+
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~----~---~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~   73 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT----G---IVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV   73 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCC----S---EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc----c---EEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEE
Confidence            479999999999999999999987766432    1   112345567889999999999999999999999999999999


Q ss_pred             ECCChhhHH----------HHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCC--------------CccchhhhhhHHHH
Q 005908           91 ACNQQSTLS----------RLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDH--------------NATSLEEVMGPIMQ  145 (670)
Q Consensus        91 d~~~~~s~~----------~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~  145 (670)
                      |+++..++.          +....|...+.. ...+.|+++++||+|+...+              ......+....+..
T Consensus        74 d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (195)
T d1svsa1          74 ALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC  153 (195)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHH
T ss_pred             eecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHH
Confidence            999887652          223346666643 34578999999999963210              00011222223333


Q ss_pred             HhccC--------CeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          146 QFREI--------ETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       146 ~~~~~--------~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      .+...        ..+++|||++|.||+++|+.+.+.++
T Consensus       154 ~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         154 QFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            33221        24678999999999999999887765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.6e-18  Score=158.16  Aligned_cols=155  Identities=21%  Similarity=0.243  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhh-------HhhhhchHhhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILSNKEAL  495 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~~~~~~  495 (670)
                      .|+|+|++|||||||+|+|++.....++.  +++..... ..+..  ....+..+|++|...       ......+...+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQ-DTVEW--YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSE-EEEEE--TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccc-ccccc--cccccccccccceeeeecccccccccccccccc
Confidence            68999999999999999999987655443  23332222 22322  345566788877211       11111255667


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  575 (670)
                      ..+|+++++.|.+++... ....+...+...      ++|+|+|+||+|+.++. ..+...++ .+.+..+++++||++|
T Consensus        79 ~~ad~i~~~~~~~~~~~~-~~~~~~~~l~~~------~~pviiv~NK~Dl~~~~-~~~~~~~~-~~~~~~~~i~iSAk~g  149 (171)
T d1mkya1          79 READLVLFVVDGKRGITK-EDESLADFLRKS------TVDTILVANKAENLREF-EREVKPEL-YSLGFGEPIPVSAEHN  149 (171)
T ss_dssp             TTCSEEEEEEETTTCCCH-HHHHHHHHHHHH------TCCEEEEEESCCSHHHH-HHHTHHHH-GGGSSCSCEECBTTTT
T ss_pred             ccCcEEEEeecccccccc-cccccccccccc------cccccccchhhhhhhhh-hhHHHHHH-HhcCCCCeEEEecCCC
Confidence            899999999999887654 345555556554      79999999999987522 12222222 2345667899999999


Q ss_pred             -ChHHHHHHHHHHHhCC
Q 005908          576 -DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       576 -~v~~l~~~l~~~~~~~  591 (670)
                       |+++++++|.+.+...
T Consensus       150 ~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         150 INLDTMLETIIKKLEEK  166 (171)
T ss_dssp             BSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhCCCC
Confidence             9999999999988653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=7.7e-18  Score=154.27  Aligned_cols=153  Identities=16%  Similarity=0.189  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      ||+++|++|||||||+|+|.++++... .||.+.  ....+...  .....++++.+...+...  ...++..+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-~~t~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   74 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHP--TSEELAIG--NIKFTTFDLGGHIQARRL--WKDYFPEVNGIVFL   74 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCSC--EEEEECCT--TCCEEEEECCCSGGGGGG--GGGGCTTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-eceeeE--eEEEeccC--CeeEEEEeeccchhhhhh--Hhhhhhheeeeeee
Confidence            799999999999999999999987644 344443  22333333  345667999998777776  77888999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH-------HHhC---CCCcEEeeccc
Q 005908          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT-------QELG---IEPPIPVSMKS  574 (670)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-------~~~~---~~~~~~vSA~~  574 (670)
                      +|.++..++.....+...........  +.|+++++||.|+.......+..+.+.       ....   ..++++|||++
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~t  152 (166)
T d2qtvb1          75 VDAADPERFDEARVELDALFNIAELK--DVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM  152 (166)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCTTTT--TCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTT
T ss_pred             ccccchhhhhhhhHHHHhhhhhhccC--CceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCC
Confidence            99999999888888877776655544  799999999999876332222212111       0000   01489999999


Q ss_pred             C-ChHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIW  586 (670)
Q Consensus       575 g-~v~~l~~~l~~  586 (670)
                      | |++++|++|.+
T Consensus       153 g~Gv~e~~~~l~~  165 (166)
T d2qtvb1         153 RNGYLEAFQWLSQ  165 (166)
T ss_dssp             TBSHHHHHHHHTT
T ss_pred             CCCHHHHHHHHhC
Confidence            9 99999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=7.4e-19  Score=165.10  Aligned_cols=158  Identities=15%  Similarity=0.135  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCcc----chhh---hHHHhccCCE
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGK---LNEELKRADA   85 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~---~~~~~~~ad~   85 (670)
                      +|+|+|+||||||||+|+|++.+.... .++++...........++..+.+|||||+.+    ....   ....+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            699999999999999999998763222 3332222222222334556799999999632    1111   2244677899


Q ss_pred             EEEEEECCChhhHHHHHH--HHHHHHHh---cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908           86 VVLTYACNQQSTLSRLSS--YWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (670)
Q Consensus        86 ii~v~d~~~~~s~~~~~~--~~~~~l~~---~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (670)
                      ++++++............  .+......   ...++|+++|+||+|+.+.      .+..+.+.+.+....+++.+||++
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH------HHHHHHHHHHhccCCcEEEEECCC
Confidence            999998765433222111  11111111   1237899999999999752      233455666665555789999999


Q ss_pred             CCCchHHHHHHHHHHcC
Q 005908          161 MIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       161 ~~gi~~l~~~i~~~~~~  177 (670)
                      |.||++|++.+.+.+..
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999998754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.5e-18  Score=158.80  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhh-------HhhhhchHhhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILSNKEAL  495 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~~~~~~  495 (670)
                      +||+++|.||||||||+|+|++.+...++. +.+........+...  ...+.+||++|...       ...+.++...+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC--CeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999999987665544 222222222223333  35666788887311       01112245567


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEeeccc
Q 005908          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKS  574 (670)
Q Consensus       496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSA~~  574 (670)
                      ..+|++++|+|++++...+.... ...+    .    ..++++++||+|+.+....    +++...++. .+++++||++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~-~~~~----~----~~~~i~~~~k~d~~~~~~~----~~~~~~~~~~~~~~~vSA~~  145 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKI-LERI----K----NKRYLVVINKVDVVEKINE----EEIKNKLGTDRHMVKISALK  145 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHH-HHHH----T----TSSEEEEEEECSSCCCCCH----HHHHHHHTCSTTEEEEEGGG
T ss_pred             HhCCEEEEEEeCCCCcchhhhhh-hhhc----c----cccceeeeeeccccchhhh----HHHHHHhCCCCcEEEEECCC
Confidence            89999999999999877543332 2222    1    5889999999999875432    233334333 4699999999


Q ss_pred             C-ChHHHHHHHHHH
Q 005908          575 K-DLNNVFSRIIWA  587 (670)
Q Consensus       575 g-~v~~l~~~l~~~  587 (670)
                      | |+++|+++|.+.
T Consensus       146 g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         146 GEGLEKLEESIYRE  159 (160)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            9 999999999763

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=4.2e-18  Score=161.77  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=117.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +++||+++|++|||||||++||..+.|.. .|++ +...  ..+....+.+.+||++|++.+...+..+++.++++++|+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~~-~pTi-G~~~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   76 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGSG-VPTT-GIIE--YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV   76 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSSC-CCCC-SCEE--EEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCCC-Ccee-eEEE--EEEeccceeeeeccccccccccccccccccccceeeEee
Confidence            47999999999999999999999888743 4443 3322  235567789999999999999999999999999999999


Q ss_pred             ECCChhh----------HHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCc---------------cchhhhhhHHH
Q 005908           91 ACNQQST----------LSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNA---------------TSLEEVMGPIM  144 (670)
Q Consensus        91 d~~~~~s----------~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~---------------~~~~~~~~~~~  144 (670)
                      |.++..+          +.+....|...+... ..+.|+++++||+|+......               .+.......+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  156 (200)
T d2bcjq2          77 ALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL  156 (200)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHH
T ss_pred             eccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHH
Confidence            9987542          233333588888654 458999999999997432110               01111112222


Q ss_pred             HHhcc-------CCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          145 QQFRE-------IETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       145 ~~~~~-------~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ..+..       ...+++|||++|.||+++|+.+.+.++
T Consensus       157 ~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         157 KMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             HHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            22211       124789999999999999998877765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=6.5e-18  Score=158.53  Aligned_cols=162  Identities=14%  Similarity=0.055  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh----h-hchHhhccccc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----I-LSNKEALASCD  499 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----~-~~~~~~~~~ad  499 (670)
                      +|+|+|+||||||||+|+|++........+.++.+.......++ ....+.+||++|......    + ......+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            69999999999999999999987765555433333444455555 345677899999532111    1 11345567899


Q ss_pred             EEEEEEECCCcccHHHH--HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEeecccC-
Q 005908          500 VTIFVYDSSDEYSWKRT--KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKSK-  575 (670)
Q Consensus       500 ~vllv~D~s~~~s~~~~--~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSA~~g-  575 (670)
                      .++++++..........  ..+.............++|+++|+||+|+.+.   .+..+.+.+.+.. .+++++||++| 
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~---~~~~~~~~~~~~~~~~v~~iSA~~g~  158 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---AENLEAFKEKLTDDYPVFPISAVTRE  158 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH---HHHHHHHHHHhccCCcEEEEECCCCC
Confidence            99999987754332222  22222222222222226899999999999873   2334455555532 36999999999 


Q ss_pred             ChHHHHHHHHHHHhC
Q 005908          576 DLNNVFSRIIWAAEH  590 (670)
Q Consensus       576 ~v~~l~~~l~~~~~~  590 (670)
                      |+++|++.|.+.+..
T Consensus       159 Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         159 GLRELLFEVANQLEN  173 (185)
T ss_dssp             TTHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHhhhh
Confidence            999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.74  E-value=2.4e-17  Score=154.29  Aligned_cols=158  Identities=16%  Similarity=0.149  Sum_probs=107.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (670)
                      ++..||+++|++|||||||+|+|.++.+.... ++......  .+..+  ......++..+...+...  ....++..++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   83 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSE--ELTIA--GMTFTTFDLGGHIQARRV--WKNYLPAING   83 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEET--TEEEEEEEECC----CCG--GGGGGGGCSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccccee--EEEec--ccccccccccchhhhhhH--Hhhhhcccce
Confidence            45689999999999999999999999876554 33333322  23333  345667888888777776  7788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC----------------
Q 005908          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI----------------  564 (670)
Q Consensus       501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------  564 (670)
                      +++++|+++...+.....+...........  +.|+++++||.|+..... ...+.+.......                
T Consensus        84 ~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~K~D~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  160 (186)
T d1f6ba_          84 IVFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRPEAIS-EERLREMFGLYGQTTGKGSVSLKELNARP  160 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTSTTCCC-HHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             eeeeeeccCccchHHHHHHHHHhhcccccC--CCceEEEEeccCccccCC-HHHHHHHHhhcccchhhhhhhHHHhhcCC
Confidence            999999999988887776665554433323  699999999999876322 2222222221110                


Q ss_pred             CCcEEeecccC-ChHHHHHHHHHHH
Q 005908          565 EPPIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       565 ~~~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                      .++++|||++| |++++|++|.+.+
T Consensus       161 ~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         161 LEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            13789999999 9999999998754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=2.4e-17  Score=155.97  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=98.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CCcccceEEEEEEcCCCceEEEEEecCC-------h---hhHhh-h
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFS-ENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP-------E---EGVKK-I  488 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g-------~---~~~~~-~  488 (670)
                      ..++|+|+|.||||||||+|+|++.+.. ..+. ++++......  ... ....  +.|..+       .   +.... +
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~--~~~-~~~~--~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IIN-DELH--FVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EET-TTEE--EEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc--ccc-ccce--EEEEEeeccccccccccchhhhHH
Confidence            3469999999999999999999987643 2222 2222222211  111 1111  122222       1   11111 2


Q ss_pred             hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC---C
Q 005908          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI---E  565 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~  565 (670)
                      ......+..+|++++|+|++++.. .....++..+...      ++|+++|+||+|+.+.....+..+.+.+.+..   .
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             hhhhccccchhhhhhhhhcccccc-ccccccccccccc------cCcceechhhccccCHHHHHHHHHHHHHHhcccCCC
Confidence            224456678899999999988754 3345555555554      69999999999998755555555656665544   3


Q ss_pred             CcEEeecccC-ChHHHHHHHHHHHh
Q 005908          566 PPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       566 ~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      +++++||++| |++++++.|.+.+.
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            5899999999 99999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.2e-17  Score=156.50  Aligned_cols=151  Identities=21%  Similarity=0.188  Sum_probs=99.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccc---------------hhhhH
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------------KGKLN   77 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------~~~~~   77 (670)
                      .|+|+|.||||||||+|+|++.+.... .|+++   +....+...  .+.++||||....               .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T---~~~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT---RKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT---TSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEe---ecccccccc--cceecccCCceeccccccccccccchhhhhhhh
Confidence            699999999999999999999875332 44322   211223333  3678999996311               11223


Q ss_pred             HHhccCCEEEEEEECCChhhHHHH---------HHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc
Q 005908           78 EELKRADAVVLTYACNQQSTLSRL---------SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (670)
Q Consensus        78 ~~~~~ad~ii~v~d~~~~~s~~~~---------~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (670)
                      ..++.+|++++|+|.+........         ...+.+.++..  ++|+++|+||+|+.....     .....+...+.
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-----~~~~~~~~~~~  149 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-----EVINFLAEKFE  149 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-----HHHHHHHHHHT
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-----HHHHHHHHHhc
Confidence            556789999999998754322211         11245556655  899999999999865322     22222333322


Q ss_pred             cC-----CeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          149 EI-----ETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       149 ~~-----~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ..     ..++++||++|.||++|++.+.+.+.
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            11     14899999999999999999987654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=5.3e-18  Score=164.38  Aligned_cols=158  Identities=18%  Similarity=0.130  Sum_probs=107.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-CC---CCe--------------EeCCcccCCceeEEEEeCCCCccchhh
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VH---APT--------------RLPPDFYPDRVPVTIIDTSSSLENKGK   75 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-~~---~~~--------------~~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (670)
                      .|+|+|++|+|||||+|+|++........+ +.   ...              .....+..++..+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            499999999999999999987542221111 00   000              011234456778999999999999888


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhh-----------------
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE-----------------  138 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~-----------------  138 (670)
                      ....+..+|++|+|+|+.+.-....  .+.+..+...  ++|+|+|+||+|+...........                 
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT--QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccch--hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            8888999999999999887544443  3467777776  899999999999876543200000                 


Q ss_pred             -hhhHHHHH----------------hccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          139 -VMGPIMQQ----------------FREIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       139 -~~~~~~~~----------------~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                       ........                +....+++++||++|.||++|++.+....
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence             00000010                11123689999999999999999887654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=6.5e-17  Score=151.34  Aligned_cols=151  Identities=17%  Similarity=0.212  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-CcccceEEEEEEcCCCceEEEEEecCCh-----------hhHhh--hhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNVVDQPGGNKKTLILQEIPE-----------EGVKK--ILS  490 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----------~~~~~--~~~  490 (670)
                      .|+++|.||||||||+|+|++........+ +|....   .+...+    +.++|++|.           +.+..  ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~---~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII---EIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE---EEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc---cccccc----ceecccCCceeccccccccccccchhhhhh
Confidence            589999999999999999999876543334 443322   222221    345777772           11111  111


Q ss_pred             hHhhcccccEEEEEEECCCcccHHH----------HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKR----------TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ  560 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~----------~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  560 (670)
                      ....++.+|++++|+|++.......          .......+...      ++|+++|+||+|+.+..  ......+..
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~------~~p~iiv~NK~D~~~~~--~~~~~~~~~  146 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL------DIPTIVAVNKLDKIKNV--QEVINFLAE  146 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT------TCCEEEEEECGGGCSCH--HHHHHHHHH
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc------CCCEEEEEeeeehhhhH--HHHHHHHHH
Confidence            3456688999999999975422111          11223333332      69999999999987532  223333444


Q ss_pred             HhCCC------CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          561 ELGIE------PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       561 ~~~~~------~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      .+...      +++++||++| |+++|++.|.+.+++
T Consensus       147 ~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         147 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            44332      3789999999 999999999998763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.9e-17  Score=154.81  Aligned_cols=119  Identities=17%  Similarity=0.146  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch-hhhHHHhccCCEEEEEEEC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVLTYAC   92 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~ii~v~d~   92 (670)
                      +|+|+|++|||||||+|+|+++.+....++..............++.+.+||++|++.+. ..+..+++.++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            699999999999999999999998777665443333222223557889999999998775 4567888999999999999


Q ss_pred             CChhhH-HHHHHHHHHHHHh---cCCCCCEEEEEeCCCCCCCCC
Q 005908           93 NQQSTL-SRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHN  132 (670)
Q Consensus        93 ~~~~s~-~~~~~~~~~~l~~---~~~~~pvilv~NK~Dl~~~~~  132 (670)
                      ++..++ ....+.+...+..   ...++|++||+||+|+.....
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            987654 4444444444432   234689999999999986543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=4.4e-17  Score=154.17  Aligned_cols=155  Identities=15%  Similarity=0.136  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch-------------hhhHHH
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------------GKLNEE   79 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------------~~~~~~   79 (670)
                      .+|+|+|.||||||||+|+|++.+...........+. ..........+.+.|++|.....             ......
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ-TLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT  102 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------C-CEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceee-ecccccccccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence            4899999999999999999998763222111111111 11111122346677777743211             111144


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEEeC
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVECS  157 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S  157 (670)
                      +..+|++++|+|++.+......  .+++.++..  ++|+++|+||+|+......   .+..+.+.+.+.  ...+++++|
T Consensus       103 ~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~~--~~piivv~NK~D~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         103 REELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccchhhhhhhhhcccccccccc--ccccccccc--cCcceechhhccccCHHHH---HHHHHHHHHHhcccCCCCEEEEe
Confidence            5667999999998876543332  477888877  7999999999998654322   233333333332  234789999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 005908          158 ATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       158 A~~~~gi~~l~~~i~~~~  175 (670)
                      |++|.|++++++.|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999988765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.69  E-value=4e-17  Score=154.37  Aligned_cols=165  Identities=15%  Similarity=0.093  Sum_probs=106.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCCCCC----------------eE------eCCcccCCceeEE
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAP----------------TR------LPPDFYPDRVPVT   62 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~----~~~~~~~----------------~~------~~~~~~~~~~~~~   62 (670)
                      .++.++|+++|+.++|||||+++|++......    ..+....                ..      ...........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            46789999999999999999999987431111    1110000                00      0001112246699


Q ss_pred             EEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhH
Q 005908           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP  142 (670)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~  142 (670)
                      ++||||+.+|.......+..+|++++|+|+.+........+ .+..++... ..+++++.||+|+.+........+.+..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~~-~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQIIG-QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHhc-CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999998888888999999999999887632222222 344444442 3458889999999764322011122223


Q ss_pred             HHHHhc-cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          143 IMQQFR-EIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       143 ~~~~~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      +...+. ...+++++||++|.||++|++.+.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            333222 123789999999999999999887754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=3.4e-17  Score=158.60  Aligned_cols=157  Identities=15%  Similarity=0.166  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEE----------------EcCCCceEEEEEecCChhhHhhh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV----------------DQPGGNKKTLILQEIPEEGVKKI  488 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~v----------------d~~g~~~~~~i~d~~g~~~~~~~  488 (670)
                      .|+|+|.+|+|||||+|+|++........+.++........                ....+...+.++|++|+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            49999999999999999999865443322222211111111                11223456778999999877665


Q ss_pred             hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-----------------
Q 005908          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-----------------  551 (670)
Q Consensus       489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-----------------  551 (670)
                        +...+..+|++|+|+|+.++..-+ ....+..+...      ++|+|+|+||+|+......                 
T Consensus        87 --~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~------~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v  157 (227)
T d1g7sa4          87 --RKRGGALADLAILIVDINEGFKPQ-TQEALNILRMY------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (227)
T ss_dssp             --BCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHHT------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             --chhcccccceEEEEEecccCcccc-hhHHHHHhhcC------CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHH
Confidence              567889999999999999886633 34445555544      7999999999998763311                 


Q ss_pred             ----HHHHHHHHHHh-----------------CCCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          552 ----VQDSARVTQEL-----------------GIEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       552 ----~~~~~~~~~~~-----------------~~~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                          .....+....+                 +..+++++||++| |+++|++.+...+.+
T Consensus       158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                00111111110                 1125899999999 999999999887643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.6e-17  Score=155.29  Aligned_cols=161  Identities=17%  Similarity=0.219  Sum_probs=105.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   90 (670)
                      +.+||+++|++|||||||++||.   +.....+|.+...  ..+.....++.+||++|++.+...+..+++.++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~   75 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLV   75 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeeeeeeeeecccceeeecccccccccccceeEEEE
Confidence            45899999999999999999993   3333333344322  245667899999999999999999999999999999999


Q ss_pred             ECCChhh----------HHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCC---------------ccchhhhhhHHH
Q 005908           91 ACNQQST----------LSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHN---------------ATSLEEVMGPIM  144 (670)
Q Consensus        91 d~~~~~s----------~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~---------------~~~~~~~~~~~~  144 (670)
                      |.++..+          ++.....|...+.. ...++|++|++||+|+.....               ........+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  155 (200)
T d1zcba2          76 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV  155 (200)
T ss_dssp             ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred             EcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHH
Confidence            9987533          34433333333433 235899999999999753210               001122233333


Q ss_pred             HHhcc--------CCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908          145 QQFRE--------IETCVECSATTMIQVPDVFYYAQKAVL  176 (670)
Q Consensus       145 ~~~~~--------~~~~~~~SA~~~~gi~~l~~~i~~~~~  176 (670)
                      ..+..        ...+++|||+++.||+++|+.+.+.++
T Consensus       156 ~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         156 ECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            33321        123568999999999999998877654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.4e-17  Score=156.44  Aligned_cols=157  Identities=14%  Similarity=0.076  Sum_probs=113.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+++|..+.+.  +.||++..+  ..+..  ....+.+||++|++.+...  +..+++.+++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~--~~~~~--~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i   73 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE--YPFDL--QSVIFRMVDVGGQRSERRK--WIHCFENVTSIM   73 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEE--EEEEC--SSCEEEEEECCCSTTGGGG--GGGGCSSCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEE--EEEec--cceeeeecccccccccccc--ccccccccceee
Confidence            589999999999999999999988874  457877543  33333  4567888999999999888  889999999999


Q ss_pred             EEEECCCccc-----------HHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-----------------cHHH
Q 005908          503 FVYDSSDEYS-----------WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-----------------AVQD  554 (670)
Q Consensus       503 lv~D~s~~~s-----------~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-----------------~~~~  554 (670)
                      +++|.++..+           ++....|...+......   +.|+++++||.|+...+.                 ....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~---~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (200)
T d2bcjq2          74 FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ---NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  150 (200)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGS---SSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHH
T ss_pred             EeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhcc---CccEEEecchhhhhhhcccchHHHHhcccccCCchhHHH
Confidence            9999987543           44455666666544333   699999999999743211                 1112


Q ss_pred             HHHHHH-H---hCCC-----CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          555 SARVTQ-E---LGIE-----PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       555 ~~~~~~-~---~~~~-----~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ...+.. .   ....     .++++||++| ||+++|+.+.+.+.+
T Consensus       151 ~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         151 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            222211 1   1111     2578999999 999999999887753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.2e-16  Score=146.90  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=106.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-------hhchHhh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-------ILSNKEA  494 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-------~~~~~~~  494 (670)
                      +.-.|+|+|.+|||||||+|+|++.....++.+..+.......+... +......+|++|......       .......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec-CCceeEeecCCCceecchhhhhhhhhhccccc
Confidence            34569999999999999999999988776655322222222333333 344555577776321111       1012233


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecc
Q 005908          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                      ...+++++++.|.++..  .....+...+.+.      ..|+++|+||+|+...... ....+.+...++..+++++||+
T Consensus        83 ~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~~------~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWT--PDDEMVLNKLREG------KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             CCCEEEEEEEEETTCCC--HHHHHHHHHHHSS------SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             hhhcceeEEEEecCccc--hhHHHHHHHhhhc------cCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            46788899999987642  2333333344332      5889999999998875433 4556666777777789999999


Q ss_pred             cC-ChHHHHHHHHHHHhC
Q 005908          574 SK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~  590 (670)
                      +| |+++|++.|.+.++.
T Consensus       155 ~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             TTTTHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhCCC
Confidence            99 999999999987743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1e-16  Score=151.25  Aligned_cols=153  Identities=14%  Similarity=0.042  Sum_probs=106.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|..|||||||+++|...+++.     ++  +....++  +....+.+||++|++.+..+  +..+++.+++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~--~~~~~~~--~~~~~~~i~D~~Gq~~~~~~--~~~~~~~~~~~i   70 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAG-----TG--IVETHFT--FKDLHFKMFDVGGQRSERKK--WIHCFEGVTAII   70 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCC-----CS--EEEEEEE--ETTEEEEEEEECCSGGGGGG--GGGGCTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-----cc--EEEEEEE--eeeeeeeeeccccccccccc--hhhcccCCceee
Confidence            5899999999999999999998776543     22  2222233  35678889999999999998  899999999999


Q ss_pred             EEEECCCcccHH-----------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----------------ccHHH
Q 005908          503 FVYDSSDEYSWK-----------RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------------MAVQD  554 (670)
Q Consensus       503 lv~D~s~~~s~~-----------~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----------------~~~~~  554 (670)
                      +|+|.++..++.           ....|...+..... .  +.|+++++||+|+...+                 ...+.
T Consensus        71 ~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~-~--~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (195)
T d1svsa1          71 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF-T--DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEA  147 (195)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGG-T--TSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHH
T ss_pred             eEEeecccchHHHHhhhhHHHHHHHHHHHHHhccccc-C--CCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHH
Confidence            999999877652           22333333332222 2  68999999999863211                 00111


Q ss_pred             HHHHHHHh-C---C---C--CcEEeecccC-ChHHHHHHHHHHHh
Q 005908          555 SARVTQEL-G---I---E--PPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       555 ~~~~~~~~-~---~---~--~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      ...+...+ .   .   .  ++++|||++| ||+++|+.+.+.+.
T Consensus       148 ~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         148 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            11122111 1   1   1  3568999999 99999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=1.6e-16  Score=151.22  Aligned_cols=168  Identities=15%  Similarity=0.086  Sum_probs=107.1

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC---C-------CC-------------CCCCeEeC--------CcccC
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---V-------PP-------------VHAPTRLP--------PDFYP   56 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---~-------~~-------------~~~~~~~~--------~~~~~   56 (670)
                      ..++.++|+|+|+.++|||||+++|++..-...   .       .+             ........        .....
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            346789999999999999999999986321100   0       00             00000000        00001


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~  136 (670)
                      ....+.++||||+.+|...+...+..+|++|+|+|+.+.-.-.... ..+..+.... -.|+|++.||+|+.+.......
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~-e~~~~~~~~~-i~~iIV~vNK~Dl~~~~~~~~~  161 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQ  161 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHH-HHHHHHHHTT-CCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHH-HHHHHHHHcC-CceeeeccccCCCccchHHHHH
Confidence            1346899999999999888888999999999999987753112222 2344444441 3589999999999764322111


Q ss_pred             hhhhhHHHHHhc-cCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908          137 EEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLH  177 (670)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  177 (670)
                      ......+..... ...+++++||++|.||++|++.+...+..
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            122222222221 12379999999999999999988876543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.65  E-value=1.7e-15  Score=142.99  Aligned_cols=161  Identities=14%  Similarity=0.133  Sum_probs=106.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC----C-CcccceEEEEEEc---------------CC----CceEEEE
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA----P-TTGEQYAVNVVDQ---------------PG----GNKKTLI  476 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~----~-t~~~~~~~~~vd~---------------~g----~~~~~~i  476 (670)
                      +..++|+++|..++|||||+|+|++........    . |....+.....+.               .+    ....+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            456899999999999999999998754322211    1 1111111111110               00    1235678


Q ss_pred             EecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHH--
Q 005908          477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD--  554 (670)
Q Consensus       477 ~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~--  554 (670)
                      +|++|+..|...  ....+..+|++++|+|+.++...+...+.+..+....     ..+++++.||+|+.+.......  
T Consensus        83 iDtPGh~~f~~~--~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-----~~~iiv~inK~D~~d~~~~~~~~~  155 (195)
T d1kk1a3          83 IDAPGHEALMTT--MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIELVDKEKALENYR  155 (195)
T ss_dssp             EECSSHHHHHHH--HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             eccchhhhhhHH--hhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-----CccceeeeecccchhhHHHHHHHH
Confidence            999999888776  6778889999999999998753344444444444441     2457889999999875433232  


Q ss_pred             -HHHHHHHhCC--CCcEEeecccC-ChHHHHHHHHHHH
Q 005908          555 -SARVTQELGI--EPPIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       555 -~~~~~~~~~~--~~~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                       ..++......  .|++++||++| |+++|++.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         156 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence             3333333332  26899999999 9999999998865

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.1e-15  Score=145.72  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv  504 (670)
                      +|+|+|++|||||||+|+|+++++...+ +|++.......+. .+....+.+||++|++.++.. .+..++..++++++|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~~~~~i~v   78 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQ-LLDRFKSSARAVVFV   78 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHH-HHHHHGGGEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccch-hhhhhhhhccccceE
Confidence            6999999999999999999998887654 5555444433332 234567888999999877542 156778999999999


Q ss_pred             EECCCcccH-HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          505 YDSSDEYSW-KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       505 ~D~s~~~s~-~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      +|+++..++ .....++..+.........++|+++|+||+|+....
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            999987553 444445444432221111268999999999998643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=2.7e-15  Score=142.70  Aligned_cols=163  Identities=18%  Similarity=0.189  Sum_probs=105.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-----Ccccce---EEE-----------E----------EEcCCCc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-----TTGEQY---AVN-----------V----------VDQPGGN  471 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-----t~~~~~---~~~-----------~----------vd~~g~~  471 (670)
                      +..++|+|+|..++|||||+++|++..-......     +.....   ...           .          .+.....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4558999999999999999999987322211110     000000   000           0          0011112


Q ss_pred             eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc
Q 005908          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA  551 (670)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~  551 (670)
                      ..+.++|++|+..|-..  +...+..+|++|+|+|+.++..-...++.+..+....     -.|+|++.||+|+.+....
T Consensus        86 r~~~iiD~PGH~df~~~--~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~-----i~~iIV~vNK~Dl~~~~~~  158 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMAT--MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKEEA  158 (205)
T ss_dssp             EEEEEEECSCHHHHHHH--HHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEECGGGSCHHHH
T ss_pred             EEEEEeccchHHHHHhh--hhcceeccccccccccccccccchhHHHHHHHHHHcC-----CceeeeccccCCCccchHH
Confidence            46778999999888776  6778889999999999998743233344444444431     2588999999999875443


Q ss_pred             HHHHHHHHHH---hCC--CCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908          552 VQDSARVTQE---LGI--EPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       552 ~~~~~~~~~~---~~~--~~~~~vSA~~g-~v~~l~~~l~~~~~~  590 (670)
                      ......+.+.   ...  .|++++||++| |+++|++.|.+.++.
T Consensus       159 ~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         159 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            3333333332   222  26899999999 999999999887654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.64  E-value=1.4e-16  Score=149.67  Aligned_cols=164  Identities=16%  Similarity=0.114  Sum_probs=110.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC-------CCCC----CCC---CCCCe--EeCCcccCCceeEEEEeCCCCccch
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES-------VPEK----VPP---VHAPT--RLPPDFYPDRVPVTIIDTSSSLENK   73 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~~~----~~~---~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~   73 (670)
                      ++.++|+++|+.++|||||+++|++..       +...    ...   ..+.+  .....+...+..+.++||||+.+|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            467999999999999999999997420       1000    000   00011  1223455778899999999999998


Q ss_pred             hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc-cchhhhhhHHHHHhcc---
Q 005908           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE---  149 (670)
Q Consensus        74 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~---  149 (670)
                      ..+...+..+|++|+|+|+.+...-+..  +.+..+.... ..|+|++.||+|+...... ......+..+...++.   
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~~-~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQIG-VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHTT-CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHhc-CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            8888999999999999999876543332  2455555542 4689999999998753221 0112233444444432   


Q ss_pred             CCeEEEeCcccC----------CCchHHHHHHHHHHc
Q 005908          150 IETCVECSATTM----------IQVPDVFYYAQKAVL  176 (670)
Q Consensus       150 ~~~~~~~SA~~~----------~gi~~l~~~i~~~~~  176 (670)
                      ..+++++||++|          .|+.+|++.+.+.+.
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            136999999998          588888887766543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.9e-16  Score=150.26  Aligned_cols=156  Identities=17%  Similarity=0.159  Sum_probs=104.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl  502 (670)
                      .+||+++|.+|||||||+++|.   +...+.||++.  ....++.  ....+.+||++|++.+...  +..+++.+++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~--~~~~~~~--~~~~~~~~D~~gq~~~~~~--~~~~~~~~~~~~   72 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI--HEYDFEI--KNVPFKMVDVGGQRSERKR--WFECFDSVTSIL   72 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE--EEEEEEE--TTEEEEEEEECC---------CTTSCTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee--EEEEEee--eeeeeeeecccceeeeccc--ccccccccceeE
Confidence            4899999999999999999993   44555677763  3344444  4577889999999988887  889999999999


Q ss_pred             EEEECCCccc----------HHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----------------ccHHHH
Q 005908          503 FVYDSSDEYS----------WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------------MAVQDS  555 (670)
Q Consensus       503 lv~D~s~~~s----------~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----------------~~~~~~  555 (670)
                      +++|.++..+          +.....++..+.......  +.|+++++||+|+.++.                 ...+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~  150 (200)
T d1zcba2          73 FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS--NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDV  150 (200)
T ss_dssp             EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT--TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHH
T ss_pred             EEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhc--CceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHH
Confidence            9999997543          344455555554433223  79999999999975311                 011222


Q ss_pred             HHHHHH-h---CC----C--CcEEeecccC-ChHHHHHHHHHHHh
Q 005908          556 ARVTQE-L---GI----E--PPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       556 ~~~~~~-~---~~----~--~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      .++... +   ..    .  .+++|||+++ ||+++|+.+.+.+.
T Consensus       151 ~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         151 QKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            222221 1   10    1  1457999999 99999999887764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.63  E-value=7e-16  Score=144.75  Aligned_cols=158  Identities=15%  Similarity=0.044  Sum_probs=108.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCC-----CCCC------CC-----CCcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERP-----FSEN------YA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~-----~~~~------~~-----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      ..++|+++|..++|||||+++|++.-     ....      ..     ..++.+.....+..  ....+.++|++|+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~--~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST--AARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC--SSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe--ceeeEEeecCcchHHH
Confidence            35899999999999999999997410     0000      00     01111112223333  4467788999999888


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc----HHHHHHHHHH
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSARVTQE  561 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~  561 (670)
                      -..  ..+.+..+|++++|+|+.++.. .+..+.+..+....     ..|+|++.||+|+...+..    ..+++.+...
T Consensus        80 ~~~--~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~~-----~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          80 VKN--MITGTAPLDGCILVVAANDGPM-PQTREHLLLARQIG-----VEHVVVYVNKADAVQDSEMVELVELEIRELLTE  151 (196)
T ss_dssp             HHH--HHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHTT-----CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHhc-----CCcEEEEEecccccccHHHHHHHHHHHHHHHHH
Confidence            775  6788899999999999999865 34444455544442     3679999999999864333    3355566666


Q ss_pred             hCC----CCcEEeecccC-----------ChHHHHHHHHHHHh
Q 005908          562 LGI----EPPIPVSMKSK-----------DLNNVFSRIIWAAE  589 (670)
Q Consensus       562 ~~~----~~~~~vSA~~g-----------~v~~l~~~l~~~~~  589 (670)
                      +++    .|++++||++|           ++.+|++.+.+.++
T Consensus       152 ~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             hCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            666    36999999986           67788888776554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=4.5e-17  Score=159.85  Aligned_cols=229  Identities=10%  Similarity=0.049  Sum_probs=145.1

Q ss_pred             ce-EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-------CCC-----------CeEeCCcccCCceeEEEEeCCCCccc
Q 005908           12 GV-RVVVVGDRGTGKSSLIAAAATESVPEKVPP-------VHA-----------PTRLPPDFYPDRVPVTIIDTSSSLEN   72 (670)
Q Consensus        12 ~~-kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-------~~~-----------~~~~~~~~~~~~~~~~i~Dt~G~~~~   72 (670)
                      ++ +|+|+|+.++|||||+.+|+...-.....+       +.+           .......+.+++.+++|+||||+.+|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            44 599999999999999999974221111100       000           00011234477899999999999999


Q ss_pred             hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCe
Q 005908           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (670)
Q Consensus        73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (670)
                      .......++.+|++|+|+|+.+.-......  .++..++.  ++|.++++||+|....    +....+.++...++...-
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~--~w~~a~~~--~lP~i~fINKmDr~~a----d~~~~l~ei~~~l~~~~v  156 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSET--VWRQAEKY--KVPRIAFANKMDKTGA----DLWLVIRTMQERLGARPV  156 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHH--HHHHHHTT--TCCEEEEEECTTSTTC----CHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHH--HHHHHHHc--CCCEEEEEeccccccc----ccchhHHHHHHHhCCCeE
Confidence            999999999999999999988876555543  66777766  8999999999998765    466778888888875433


Q ss_pred             EEEeCcccCCCchHHHHHHHHHHcCCCCCCC--------ccccccccHHHHHHH-HHHHHHhCCC-----CCCCCChHHH
Q 005908          153 CVECSATTMIQVPDVFYYAQKAVLHPTAPLF--------DHDEQTLKPRCVRAL-KRIFIICDHD-----MDGALNDAEL  218 (670)
Q Consensus       153 ~~~~SA~~~~gi~~l~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~l-~ri~~~~d~~-----~~~~l~~~el  218 (670)
                      .+....-.|.++..+.+.+............        .........+.+..| +.+....|..     ....++.+++
T Consensus       157 p~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~l~e~vae~Dd~L~e~yle~~e~~~eel  236 (276)
T d2bv3a2         157 VMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEEL  236 (276)
T ss_dssp             ECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHH
T ss_pred             EEEecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHHHHHHhhhhhcccHHHHHHHhcCCCCCHHHH
Confidence            3444444555544444433333221111000        011111122222223 2222222221     2345667776


Q ss_pred             HHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCC
Q 005908          219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (670)
Q Consensus       219 ~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~  248 (670)
                      ...-++          +|++++...+++.|++.+.+.+|+
T Consensus       237 ~~~l~~a~~~g~i~PV~~GSA~~n~GV~~LLD~i~~~~PS  276 (276)
T d2bv3a2         237 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS  276 (276)
T ss_dssp             HHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCcEEEEEEeECCCCcCHHHHHHHHHHhCCC
Confidence            544332          699999999999999999999885

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=6.9e-16  Score=143.55  Aligned_cols=154  Identities=18%  Similarity=0.167  Sum_probs=101.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhh--H-------HHhccC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL--N-------EELKRA   83 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~-------~~~~~a   83 (670)
                      .|+|+|.+|||||||+|+|++.+.... .++......+..........+..+|++|........  .       .....+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            589999999999999999998773322 222222222233333456667889999865322111  1       223456


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (670)
Q Consensus        84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  163 (670)
                      ++++++.|..+.....  . .+...+.+.  ..|+++|+||+|+......  .....+.+..+++. .+++++||++|.|
T Consensus        87 ~~~l~~~d~~~~~~~~--~-~~~~~l~~~--~~~~i~v~~k~d~~~~~~~--~~~~~~~~~~~~~~-~~~~~vSA~~g~g  158 (179)
T d1egaa1          87 ELVIFVVEGTRWTPDD--E-MVLNKLREG--KAPVILAVNKVDNVQEKAD--LLPHLQFLASQMNF-LDIVPISAETGLN  158 (179)
T ss_dssp             EEEEEEEETTCCCHHH--H-HHHHHHHSS--SSCEEEEEESTTTCCCHHH--HHHHHHHHHTTSCC-SEEEECCTTTTTT
T ss_pred             ceeEEEEecCccchhH--H-HHHHHhhhc--cCceeeeeeeeeccchhhh--hhhHhhhhhhhcCC-CCEEEEeCcCCCC
Confidence            7888888866543222  2 244445544  6789999999998765432  33445556666653 4899999999999


Q ss_pred             chHHHHHHHHHH
Q 005908          164 VPDVFYYAQKAV  175 (670)
Q Consensus       164 i~~l~~~i~~~~  175 (670)
                      |++|++.+.+.+
T Consensus       159 i~~L~~~i~~~l  170 (179)
T d1egaa1         159 VDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=2.4e-16  Score=151.91  Aligned_cols=114  Identities=17%  Similarity=0.221  Sum_probs=87.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   89 (670)
                      +..+||+++|++|||||||+++|..+.+.   |+ .+....  .+..+++.+.+||++|++.+...+..++++++++++|
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~~---pT-iG~~~~--~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHVV---LT-SGIFET--KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHCC---CC-CSCEEE--EEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCcC---CC-CCeEEE--EEEECcEEEEEEecCccceeccchhhhcccccceEEE
Confidence            35789999999999999999999876553   33 332222  3455689999999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCC
Q 005908           90 YACNQQS----------TLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRG  129 (670)
Q Consensus        90 ~d~~~~~----------s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~  129 (670)
                      +|.++..          ...+....|...+.. ...++|++|++||+|+..
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            9988642          233333345555543 235899999999999854

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1.1e-15  Score=144.68  Aligned_cols=145  Identities=17%  Similarity=0.226  Sum_probs=98.4

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--------CCCC----C-C-----CCCCCeEeCCcccCCceeEEEEeCCCCcc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--------VPEK----V-P-----PVHAPTRLPPDFYPDRVPVTIIDTSSSLE   71 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--------~~~~----~-~-----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   71 (670)
                      ++.++|+++|++++|||||+++|+...        ....    . +     ++.-. .....+..++.+++|+||||+.+
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~-~~~~~~~~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN-TAHVEYETAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS-CEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEE-eeEEEEEeCCeEEEEEeCCCchh
Confidence            467999999999999999999997321        0000    0 0     11101 12234557788999999999999


Q ss_pred             chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCccchhh---hhhHHHHHh
Q 005908           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEE---VMGPIMQQF  147 (670)
Q Consensus        72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~~~~---~~~~~~~~~  147 (670)
                      |...+...+..+|++|+|+|+++....+...  .+..+...  ++| +|++.||+|+.+....  .++   .+..+...+
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~--~~~~~~~~--gi~~iiv~iNK~D~~~~~~~--~~~~~~~i~~~l~~~  153 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFMNKVDMVDDPEL--LDLVEMEVRDLLNQY  153 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCCCHHH--HHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEecccCCCHHH--HHHHHHHHHHHHHhc
Confidence            9999999999999999999998876665533  56666666  665 7788999998753211  222   223333332


Q ss_pred             c---cCCeEEEeCcccC
Q 005908          148 R---EIETCVECSATTM  161 (670)
Q Consensus       148 ~---~~~~~~~~SA~~~  161 (670)
                      +   ...++++.||..+
T Consensus       154 ~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         154 EFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             TSCTTTSCEEECCHHHH
T ss_pred             CCCcccceeeeeechhh
Confidence            2   1236888888654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.57  E-value=3.1e-16  Score=153.62  Aligned_cols=225  Identities=13%  Similarity=0.103  Sum_probs=140.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-------CCCC--------eE---eCCcccCCceeEEEEeCCCCccchhh
Q 005908           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP-------VHAP--------TR---LPPDFYPDRVPVTIIDTSSSLENKGK   75 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-------~~~~--------~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (670)
                      +|+|+|+.++|||||+.+|+...-.....+       +.+.        .+   -...+.+++.+++++||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            599999999999999999964321111111       0000        00   11234567889999999999999999


Q ss_pred             hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEE
Q 005908           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (670)
                      ....++.+|++|+|+|+.+.-......  .++.+++.  ++|.++++||+|...     ...+....+...++.. ..+.
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~--~~~~~~~~--~~p~~i~iNk~D~~~-----~~~~~l~~~~~~lg~~-vp~~  153 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKGG-----DYYALLEDLRSTLGPI-LPID  153 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGCC-----CHHHHHHHHHHHHCSE-EECE
T ss_pred             hhhhhcccCceEEEeeccCCccchhHH--HHHhhhhc--ccccccccccccccc-----cchhhhhhHHHHhccC-cCeE
Confidence            999999999999999998776655543  55666666  899999999999642     2445567777777642 3444


Q ss_pred             eCcccCCCchHHHHHHHHHHcCCCCCC-----CccccccccHHHHHHH-HHHHHHhCCC-----CCCCCChHHHHHHhhh
Q 005908          156 CSATTMIQVPDVFYYAQKAVLHPTAPL-----FDHDEQTLKPRCVRAL-KRIFIICDHD-----MDGALNDAELNEFQVK  224 (670)
Q Consensus       156 ~SA~~~~gi~~l~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~l-~ri~~~~d~~-----~~~~l~~~el~~~q~~  224 (670)
                      .....|.++..+.+.+...+.......     ...+......+.+..| +.+....+..     .+..+..+++...-++
T Consensus       154 ~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle~~~l~~eel~~~l~~  233 (267)
T d2dy1a2         154 LPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE  233 (267)
T ss_dssp             EEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             eeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence            444555554444443332221110000     0011111112222222 3333222211     2456677777654433


Q ss_pred             ----------hcCCCCCHHHHHHHHHHHhhhcCC
Q 005908          225 ----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (670)
Q Consensus       225 ----------~~~~~l~~~~~~~l~~~l~~~~~~  248 (670)
                                +|++++...++..+++.+.+.+|+
T Consensus       234 ai~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~Ps  267 (267)
T d2dy1a2         234 AVRRGLLYPVALASGEREIGVLPLLELILEALPS  267 (267)
T ss_dssp             HHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhCCC
Confidence                      789999999999999999999885

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.5e-14  Score=135.06  Aligned_cols=161  Identities=14%  Similarity=0.128  Sum_probs=89.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC--------hhhHhh-hhc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP--------EEGVKK-ILS  490 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g--------~~~~~~-~~~  490 (670)
                      ..+.++|+++|.||||||||+|+|++.+.........+.......+....+.. ....+..+        ...... ...
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-LVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-EEECCCCC------CCHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccc-eeeeecccccchhhhhhhhhhhhhhh
Confidence            45679999999999999999999999876655442221111111111111111 11111111        111111 101


Q ss_pred             hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh----CCCC
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----GIEP  566 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~  566 (670)
                      .......++.++.+.+...... .....+...+...      ..++++++||+|+.+........+.+.+.+    +..+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhheeEEEEeecccccch-hHHHHHHHHhhhc------cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence            2223345566777777776644 3334455555444      589999999999988544444444444333    2336


Q ss_pred             cEEeecccC-ChHHHHHHHHHHH
Q 005908          567 PIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       567 ~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                      +++|||++| |+++|++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            899999999 9999999987654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4e-15  Score=139.09  Aligned_cols=168  Identities=12%  Similarity=0.016  Sum_probs=91.3

Q ss_pred             CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCc-cch-------
Q 005908            3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSL-ENK-------   73 (670)
Q Consensus         3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~-~~~-------   73 (670)
                      .+.+.+....++|+|+|.||||||||+|+|++.+............. ........+......++++.. ...       
T Consensus         7 ~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T d1puia_           7 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQ   86 (188)
T ss_dssp             SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHH
T ss_pred             ChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhh
Confidence            34555666789999999999999999999998875433211111111 111111223333333333321 110       


Q ss_pred             hhhHHH---hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC
Q 005908           74 GKLNEE---LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (670)
Q Consensus        74 ~~~~~~---~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (670)
                      ......   ....+.++.+.+..........  .+...+...  ..++++++||+|+.+........+.+.+....+...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~  162 (188)
T d1puia_          87 RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  162 (188)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             hhhhhhhhhhhheeEEEEeecccccchhHHH--HHHHHhhhc--cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence            011112   2233455555665554444332  356666655  789999999999876433211122223333333433


Q ss_pred             CeEEEeCcccCCCchHHHHHHHHH
Q 005908          151 ETCVECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       151 ~~~~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      .+++++||++|.||++|++.|.+-
T Consensus       163 ~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         163 VQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999999999987653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=1.3e-14  Score=137.26  Aligned_cols=143  Identities=15%  Similarity=0.086  Sum_probs=96.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCC-------C-----CcccceEEEEEEcCCCceEEEEEecCChhh
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSE-----NYA-------P-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEG  484 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~-----~~~-------~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~  484 (670)
                      +.++|+++|.+++|||||+++|+...-..     ...       +     .++.+.....+.+.  ..++.++|++|+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~--~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--KRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--SCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeC--CeEEEEEeCCCchh
Confidence            45899999999999999999997321000     000       0     11112233344444  45778899999988


Q ss_pred             HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHH
Q 005908          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVT  559 (670)
Q Consensus       485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~  559 (670)
                      |-.-  ....+..+|++|+|+|+.++...+. .+.+..+...      ++| +|+++||+|+.+.+..    .++++.+.
T Consensus        80 f~~~--~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~------gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l  150 (204)
T d2c78a3          80 YIKN--MITGAAQMDGAILVVSAADGPMPQT-REHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  150 (204)
T ss_dssp             GHHH--HHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hHHH--HHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc------CCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence            8775  6788899999999999999977554 3444444444      565 7778999999764322    34455555


Q ss_pred             HHhCCC----CcEEeecccC
Q 005908          560 QELGIE----PPIPVSMKSK  575 (670)
Q Consensus       560 ~~~~~~----~~~~vSA~~g  575 (670)
                      ..++++    +++..||..+
T Consensus       151 ~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         151 NQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHTTSCTTTSCEEECCHHHH
T ss_pred             HhcCCCcccceeeeeechhh
Confidence            555553    5788888765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.53  E-value=7.2e-14  Score=133.40  Aligned_cols=155  Identities=17%  Similarity=0.128  Sum_probs=102.0

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC----------CCCCCCCe---------------------EeCCc
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPPVHAPT---------------------RLPPD   53 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~----------~~~~~~~~---------------------~~~~~   53 (670)
                      ...++.++|+++|+.++|||||+++|+...  +...          ..+.....                     .....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            455678999999999999999999997422  1100          00000000                     00112


Q ss_pred             ccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCC
Q 005908           54 FYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHN  132 (670)
Q Consensus        54 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~  132 (670)
                      +...+..+.++||||+.+|...+...+..+|++++|+|+.+...-+...  .+..+...  ++| +|++.||+|+.+..+
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~~--gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCH
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHHHc--CCCEEEEEEEccccccccc
Confidence            2345678999999999999998999999999999999998764444322  34444444  554 788999999987543


Q ss_pred             ccchhhh---hhHHHHHhccC---CeEEEeCcccCCCchH
Q 005908          133 ATSLEEV---MGPIMQQFREI---ETCVECSATTMIQVPD  166 (670)
Q Consensus       133 ~~~~~~~---~~~~~~~~~~~---~~~~~~SA~~~~gi~~  166 (670)
                      . ...+.   +..+.++.+..   .+++++||.+|.||.+
T Consensus       160 ~-~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         160 R-VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             H-HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             e-ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            2 22222   33344444321   2679999999999954

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=6.1e-14  Score=133.55  Aligned_cols=116  Identities=19%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHH----HhccCCEEE
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNE----ELKRADAVV   87 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~----~~~~ad~ii   87 (670)
                      +.+|+|+|+||||||||+|+|++.++....+.    ......+..++..+.+|||||+..+...+..    ....++.++
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt~----~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i   78 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS----QEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   78 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC----SSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEe----cceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccc
Confidence            45899999999999999999999876543221    1122234556778999999999876555543    445568999


Q ss_pred             EEEECCC-hhhHHHHHHHHHHH---HHh-cCCCCCEEEEEeCCCCCCCC
Q 005908           88 LTYACNQ-QSTLSRLSSYWLPE---LRR-LEIKVPIIVAGCKLDLRGDH  131 (670)
Q Consensus        88 ~v~d~~~-~~s~~~~~~~~~~~---l~~-~~~~~pvilv~NK~Dl~~~~  131 (670)
                      +++|..+ ..+++...+++...   ++. ...++|+++|+||+|+.+..
T Consensus        79 ~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             eEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            9999764 55666655422222   222 33589999999999997654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.46  E-value=3e-13  Score=129.05  Aligned_cols=148  Identities=20%  Similarity=0.270  Sum_probs=98.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------CCCcc---------------------cceEEEEEEc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTTG---------------------EQYAVNVVDQ  467 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------------~~t~~---------------------~~~~~~~vd~  467 (670)
                      +..++|+++|..++|||||+++|+........            .+++.                     ..........
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            46699999999999999999999742211100            00111                     1112223333


Q ss_pred             CCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCC
Q 005908          468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLK  546 (670)
Q Consensus       468 ~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~  546 (670)
                        ..+.+.++|++|+..|-..  ....+..+|++++|+|+.++..-+ ..+.+..+...      ++| +|++.||+|+.
T Consensus        87 --~~~~~~iiD~PGH~dfv~~--~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~------gv~~iiv~vNK~D~~  155 (222)
T d1zunb3          87 --AKRKFIIADTPGHEQYTRN--MATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL------GIKHIVVAINKMDLN  155 (222)
T ss_dssp             --SSEEEEEEECCCSGGGHHH--HHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCEEEEEEECTTTT
T ss_pred             --cceEEEEEeccchhhhhhh--hccccccCceEEEEeccccCcccc-hHHHHHHHHHc------CCCEEEEEEEccccc
Confidence              3467788999999888765  677889999999999999986533 33434444433      544 88999999998


Q ss_pred             CCccc-----HHHHHHHHHHhCCC----CcEEeecccC-ChHH
Q 005908          547 PYTMA-----VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (670)
Q Consensus       547 ~~~~~-----~~~~~~~~~~~~~~----~~~~vSA~~g-~v~~  579 (670)
                      +....     ..++..+.+..++.    +++++||++| |+.+
T Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         156 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            74322     33445566666653    5789999999 9843

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=6.4e-14  Score=134.59  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=85.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v  501 (670)
                      +.+||+++|.+|||||||++++..+++.    ||++  +....++.+  ...+.+||..|++.++..  +..++..++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG--~~~~~~~~~--~~~~~~~D~~Gq~~~r~~--w~~~~~~~~~i   74 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV----LTSG--IFETKFQVD--KVNFHMFDVGGQRDERRK--WIQCFNDVTAI   74 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCS--CEEEEEEET--TEEEEEEECCCSTTTTTG--GGGGCTTCSEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCC--eEEEEEEEC--cEEEEEEecCccceeccc--hhhhcccccce
Confidence            4589999999999999999999866542    5666  444455554  467889999999888887  88999999999


Q ss_pred             EEEEECCCcc----------cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908          502 IFVYDSSDEY----------SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (670)
Q Consensus       502 llv~D~s~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~  547 (670)
                      ++|+|.++..          ...+...++..+.......  +.|++|++||+|+.+
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~--~~~iil~~NK~Dl~~  128 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR--TISVILFLNKQDLLA  128 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGS--SCEEEEEEECHHHHH
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhC--CCcEEEEechhhhhh
Confidence            9999998532          2333344444444333222  699999999999865

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.8e-13  Score=127.16  Aligned_cols=121  Identities=21%  Similarity=0.238  Sum_probs=82.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhh--chHhhccccc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL--SNKEALASCD  499 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~--~~~~~~~~ad  499 (670)
                      +.++|+|+|+||||||||+|+|+++++.    ++++.......++..  ...+.+||++|++.+....  ........++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYD--GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGG--GSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeC--CeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            4579999999999999999999998754    333333333444443  3455679999987655431  1334456779


Q ss_pred             EEEEEEECCC-cccHHHHHHHHHHHH---HhcCCCCCCCcEEEEEeCCCCCCCcc
Q 005908          500 VTIFVYDSSD-EYSWKRTKELLVEVA---RLGEDSGYGVPCLLIASKDDLKPYTM  550 (670)
Q Consensus       500 ~vllv~D~s~-~~s~~~~~~~~~~i~---~~~~~~~~~~piilv~NK~Dl~~~~~  550 (670)
                      .+++++|+.+ ..++.....|+..+.   ......  ++|+++|+||+|+.+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN--GIDILIACNKSELFTARP  128 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTT--CCCEEEEEECTTSTTCCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhc--cCCeEEEEEeecccccCc
Confidence            9999999875 456666666654332   222222  799999999999987443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.37  E-value=3.8e-13  Score=129.19  Aligned_cols=154  Identities=17%  Similarity=0.181  Sum_probs=97.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC--C-----------------------------C-CCCCCCCCCeEeCCcccCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES--V-----------------------------P-EKVPPVHAPTRLPPDFYPD   57 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~-----------------------------~-~~~~~~~~~~~~~~~~~~~   57 (670)
                      ++.++|+++|+-++|||||+.+|+...  +                             . +...+. ........+..+
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~-ti~~~~~~~~~~   79 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGV-TINLTFMRFETK   79 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEECS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCc-cccceEEEEecC
Confidence            467999999999999999999996311  0                             0 000010 011122345567


Q ss_pred             ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHH------HHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC
Q 005908           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLS------RLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH  131 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~------~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~  131 (670)
                      ++.++++||||+.+|...+...++-+|++|+|+|+.+...-.      ...+ .+...+.. ...++|++.||+|+....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e-~l~~~~~~-~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKTM-GLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHHT-TCTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH-HHHHHHHh-CCCceEEEEEcccCCCcc
Confidence            889999999999999999999999999999999998752111      1111 22222222 245688999999987532


Q ss_pred             Ccc-chh---hhhhHHHHHhcc---CCeEEEeCcccCCCchH
Q 005908          132 NAT-SLE---EVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (670)
Q Consensus       132 ~~~-~~~---~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~  166 (670)
                      ... ..+   ..+..+...++.   ..+++++||.+|.||.+
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            210 111   223333333332   13689999999999854

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=4.9e-13  Score=129.75  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=88.3

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCC--CC----------------------CCCCCCC-----CC--eEeCCcccCC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VP----------------------EKVPPVH-----AP--TRLPPDFYPD   57 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~----------------------~~~~~~~-----~~--~~~~~~~~~~   57 (670)
                      .++.++|+++|+.++|||||+.+|+...  +.                      .......     +.  ......+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            4567899999999999999999995211  00                      0000000     00  0012234456


Q ss_pred             ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhH-----H-HHHHHHHHHHHhcCCCC-CEEEEEeCCCCCCC
Q 005908           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL-----S-RLSSYWLPELRRLEIKV-PIIVAGCKLDLRGD  130 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~-----~-~~~~~~~~~l~~~~~~~-pvilv~NK~Dl~~~  130 (670)
                      +..+.++||||+..|...+...+..+|++++|+|+.+..--     . ...+ .+..+...  ++ +++++.||+|+...
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~~~--~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTC
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHHHc--CCCeEEEEEEcCCCCcc
Confidence            78899999999999999999999999999999998764210     0 1111 33334444  44 48899999999754


Q ss_pred             CCc-cchhhhh---hHHHHHhcc-----CCeEEEeCcccCCCchHHHH
Q 005908          131 HNA-TSLEEVM---GPIMQQFRE-----IETCVECSATTMIQVPDVFY  169 (670)
Q Consensus       131 ~~~-~~~~~~~---~~~~~~~~~-----~~~~~~~SA~~~~gi~~l~~  169 (670)
                      ... ....+..   ..+..++..     ..+++++||++|+||.++++
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            321 0122222   222223221     12689999999999987655

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=2.9e-12  Score=133.59  Aligned_cols=159  Identities=16%  Similarity=0.116  Sum_probs=96.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCCCCCeEeCCcc-cCCceeEEEEeCCCCccchhhhH-----HHhc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLN-----EELK   81 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~   81 (670)
                      ..++|+|+|.+|||||||+|+|+|......   ..++.++++....+ ..+...+.+|||||.........     ..+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            468999999999999999999998653222   12222222211122 23344588999999764332222     3466


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC-------CCccchhhhhhHH----HHHh---
Q 005908           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-------HNATSLEEVMGPI----MQQF---  147 (670)
Q Consensus        82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~-------~~~~~~~~~~~~~----~~~~---  147 (670)
                      .+|++|++.|.  +-+-.+.  .+.+.+++.  ++|+++|.||+|....       ... ..+..++.+    ...+   
T Consensus       135 ~~d~~l~~~~~--~~~~~d~--~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~-~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         135 EYDFFIIISAT--RFKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GCSEEEEEESS--CCCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEecCC--CCCHHHH--HHHHHHHHc--CCCEEEEEeCcccccchhhhcccccc-cHHHHHHHHHHHHHHHHHHc
Confidence            78999988874  3333333  377888877  8999999999995311       101 111222222    1111   


Q ss_pred             c-cCCeEEEeCccc--CCCchHHHHHHHHHHc
Q 005908          148 R-EIETCVECSATT--MIQVPDVFYYAQKAVL  176 (670)
Q Consensus       148 ~-~~~~~~~~SA~~--~~gi~~l~~~i~~~~~  176 (670)
                      + ...++|.+|..+  ..|+.+|.+.+.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            1 123678888764  4588999888877654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=3.9e-13  Score=129.76  Aligned_cols=153  Identities=16%  Similarity=0.113  Sum_probs=100.5

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCC--CC---------------CC---------------CCCCCCCeEeCCcccC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VP---------------EK---------------VPPVHAPTRLPPDFYP   56 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~---------------~~---------------~~~~~~~~~~~~~~~~   56 (670)
                      .++.++|+++|+.++|||||+.+|+...  +.               ..               ..++. .......+..
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiT-i~~~~~~~~~   81 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFET   81 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEEC
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceec-cccceeEecc
Confidence            3567999999999999999999996311  00               00               00100 0011233456


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhH------HHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL------SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRG  129 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~------~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~  129 (670)
                      .+++++|+||||+.+|...+...+..+|++|+|+|+....--      ....+ .+...+..  ++| +|++.||+|+.+
T Consensus        82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~e-h~~~~~~~--gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHH-HHHHHHHc--CCCeEEEEEECCCCCC
Confidence            789999999999999999999999999999999998764210      01221 23334444  555 788999999876


Q ss_pred             CCCccchh---hhhhHHHHHhcc---CCeEEEeCcccCCCchH
Q 005908          130 DHNATSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (670)
Q Consensus       130 ~~~~~~~~---~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~  166 (670)
                      .... ...   ..+..+....+.   ..+++++||.+|.|+-+
T Consensus       159 ~d~~-~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDES-RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHH-HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            5432 222   223334444432   23689999999999854

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.33  E-value=4.3e-12  Score=125.55  Aligned_cols=87  Identities=14%  Similarity=0.031  Sum_probs=59.7

Q ss_pred             hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-CCe
Q 005908           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IET  152 (670)
Q Consensus        74 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~  152 (670)
                      ..+...++.+|+||+|+|+.++.+..+-.  +.+.+    .++|+|+|.||+|+.+..       ..+.+...+.. ...
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~----~~Kp~IlVlNK~DLv~~~-------~~~~w~~~f~~~~~~   73 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL----KNKPRIMLLNKADKADAA-------VTQQWKEHFENQGIR   73 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC----SSSCEEEEEECGGGSCHH-------HHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCHH--HHHHH----cCCCeEEEEECccCCchH-------HHHHHHHHHHhcCCc
Confidence            34567899999999999999887655421  22222    378999999999997542       22333333321 136


Q ss_pred             EEEeCcccCCCchHHHHHHHH
Q 005908          153 CVECSATTMIQVPDVFYYAQK  173 (670)
Q Consensus       153 ~~~~SA~~~~gi~~l~~~i~~  173 (670)
                      ++.+||+++.++.++...+.+
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~   94 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKE   94 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHH
T ss_pred             cceeecccCCCccccchhhhh
Confidence            899999999999887765543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=9.1e-12  Score=129.74  Aligned_cols=157  Identities=17%  Similarity=0.148  Sum_probs=95.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CCcccceEEEEEEcCCCceEEEEEecCChhhHhhh-h--ch
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-L--SN  491 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~-~--~~  491 (670)
                      +.+++|+|+|++|||||||+|+|+|........      +||...   ..+..+ +...+.+||++|-.....- .  ..
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~---~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~  129 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER---HPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLE  129 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC---EEEECS-SCTTEEEEECCCGGGSSCCHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee---eeeecc-CCCeEEEEeCCCcccccccHHHHHH
Confidence            456999999999999999999999854432211      233322   223344 3334567999995322110 0  02


Q ss_pred             HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc---------ccH---HHH----
Q 005908          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT---------MAV---QDS----  555 (670)
Q Consensus       492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~---------~~~---~~~----  555 (670)
                      ...+..+|++|++.|..-  + +....+.+.+.+.      ++|+++|.||+|.....         ...   +..    
T Consensus       130 ~~~~~~~d~~l~~~~~~~--~-~~d~~l~~~l~~~------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~  200 (400)
T d1tq4a_         130 KMKFYEYDFFIIISATRF--K-KNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  200 (400)
T ss_dssp             HTTGGGCSEEEEEESSCC--C-HHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             HhhhhcceEEEEecCCCC--C-HHHHHHHHHHHHc------CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHH
Confidence            334677898888877532  3 3344556666665      79999999999963110         001   111    


Q ss_pred             HHHHHHhCC--CCcEEeeccc--C-ChHHHHHHHHHHHhC
Q 005908          556 ARVTQELGI--EPPIPVSMKS--K-DLNNVFSRIIWAAEH  590 (670)
Q Consensus       556 ~~~~~~~~~--~~~~~vSA~~--g-~v~~l~~~l~~~~~~  590 (670)
                      ....+..+.  ++++.+|...  . ++.+|.+.+.+.+..
T Consensus       201 ~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         201 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             HHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            112223333  4688999865  3 799999999888754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.22  E-value=2.2e-11  Score=119.11  Aligned_cols=122  Identities=16%  Similarity=0.078  Sum_probs=77.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh-------hHH-
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-------LNE-   78 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~-   78 (670)
                      ....++|+++|.+|||||||+|+|++......  .++++.. .........+..+.++||||..+....       ... 
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~-~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCccee-EEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            35679999999999999999999999873322  2222211 123334456788999999997532211       111 


Q ss_pred             -HhccCCEEEEEEECCCh-hhHHHHHHHHHHHHHhc-CC--CCCEEEEEeCCCCCCCCCc
Q 005908           79 -ELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRL-EI--KVPIIVAGCKLDLRGDHNA  133 (670)
Q Consensus        79 -~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~l~~~-~~--~~pvilv~NK~Dl~~~~~~  133 (670)
                       .....|+++||++++.. -+..+.  ..+..+... ++  -.++|+|.||+|....+..
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~--~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~  165 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDK--LVAKAITDSFGKGIWNKAIVALTHAQFSPPDGL  165 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHH--HHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHH--HHHHHHHHHcchhhhhCEEEEEECcccCCcCCC
Confidence             23456899999987653 222222  234444332 22  3689999999998765443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.19  E-value=6.5e-11  Score=115.24  Aligned_cols=111  Identities=17%  Similarity=0.199  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCC-----CCCCc-------------ccceEEEEEEcCCCceEEEEEecCChhhHh
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSEN-----YAPTT-------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~-----~~~t~-------------~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~  486 (670)
                      +|+|+|..++|||||+.+|+...-...     ..+++             +.......+.+.  ..++.++|++|+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~--~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccc--ccceeEEccCchhhhh
Confidence            699999999999999999963221111     11111             112223445554  4678889999998887


Q ss_pred             hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (670)
Q Consensus       487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~  546 (670)
                      .-  ....++-+|++|+|+|+.++..-+... .++.+.+.      ++|.++++||+|..
T Consensus        82 ~e--~~~al~~~D~avlvvda~~Gv~~~t~~-~~~~~~~~------~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GE--IRGALEAADAALVAVSAEAGVQVGTER-AWTVAERL------GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HH--HHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHHT------TCCEEEEEECGGGC
T ss_pred             hh--hhhhhcccCceEEEeeccCCccchhHH-HHHhhhhc------cccccccccccccc
Confidence            76  678899999999999999997755444 44455554      79999999999974

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.19  E-value=2.2e-10  Score=111.86  Aligned_cols=126  Identities=12%  Similarity=0.038  Sum_probs=78.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChh-------hHhhhhc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEE-------GVKKILS  490 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-------~~~~~~~  490 (670)
                      ....++|+++|++|||||||+|+++|.....++.  ++|+... .......  ...+.++||+|-.       .......
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~-~~~~~~~--g~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV-MVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE-EEEEEET--TEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEE-EEEEEec--cEEEEEEeeecccCCcchHHHHHHHHH
Confidence            4567999999999999999999999988776654  3444322 2333333  3567788988831       1111101


Q ss_pred             hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      ........|++++|++++...--......+..+....... ...++|+|.||+|.....
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~-~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCGG
T ss_pred             HHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh-hhhCEEEEEECcccCCcC
Confidence            1223356799999999876421133344444444433211 036899999999988643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=2e-11  Score=117.49  Aligned_cols=149  Identities=14%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCC--CC---------------CCC--------------CCCcccceEEEEEEcCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERP--FS---------------ENY--------------APTTGEQYAVNVVDQPG  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~---------------~~~--------------~~t~~~~~~~~~vd~~g  469 (670)
                      +..++|+++|..++|||||+.+|+...  ..               ...              ....+.+.....+.++ 
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~-   82 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-   82 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC-
Confidence            345899999999999999999996311  00               000              0011122334455555 


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccH------HHHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW------KRTKELLVEVARLGEDSGYGVP-CLLIASK  542 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~------~~~~~~~~~i~~~~~~~~~~~p-iilv~NK  542 (670)
                       .+++.++|++|+..|-.-  ....+..+|++|+|+|+.++..-      .+..+.+......      ++| +|+++||
T Consensus        83 -~~~i~iiDtPGH~df~~~--~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~------gv~~iiv~iNK  153 (239)
T d1f60a3          83 -KYQVTVIDAPGHRDFIKN--MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNK  153 (239)
T ss_dssp             -SEEEEEEECCCCTTHHHH--HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEEC
T ss_pred             -CEEEEEEECCCcHHHHHH--HHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc------CCCeEEEEEEC
Confidence             378889999999988775  67888999999999999875210      1233333333333      565 7889999


Q ss_pred             CCCCCCccc-----HHHHHHHHHHhCCC----CcEEeecccC-ChHH
Q 005908          543 DDLKPYTMA-----VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (670)
Q Consensus       543 ~Dl~~~~~~-----~~~~~~~~~~~~~~----~~~~vSA~~g-~v~~  579 (670)
                      +|+.+....     ..+...+....++.    +++++||.+| |+.+
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            998763321     34555566666653    5799999999 8644

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.17  E-value=2.6e-11  Score=116.07  Aligned_cols=149  Identities=14%  Similarity=0.128  Sum_probs=93.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------------------CCCCcccceEEEEEEcCCC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-------------------------------YAPTTGEQYAVNVVDQPGG  470 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-------------------------------~~~t~~~~~~~~~vd~~g~  470 (670)
                      ..++|+|+|..++|||||+.+|+...-...                               .............++.  .
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--K   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--S
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec--C
Confidence            358999999999999999999963111000                               0000001111222333  3


Q ss_pred             ceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccH------HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 005908          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW------KRTKELLVEVARLGEDSGYGVPCLLIASKDD  544 (670)
Q Consensus       471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~------~~~~~~~~~i~~~~~~~~~~~piilv~NK~D  544 (670)
                      ...+.++|++|+..|-..  ....+.-+|++|+|+|+.++..-      .+..+.+...... .    -.++|++.||+|
T Consensus        80 ~~~i~iiDtPGH~df~~~--~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~----~~~iIv~iNK~D  152 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKN--MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G----LDQLIVAVNKMD  152 (224)
T ss_dssp             SCEEEECCCSSSTTHHHH--HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T----CTTCEEEEECGG
T ss_pred             CceeEEeeCCCcHHHHHH--HHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-C----CCceEEEEEccc
Confidence            467888999999998876  77888999999999999987321      1122222222222 1    356888999999


Q ss_pred             CCCCccc-------HHHHHHHHHHhCCC----CcEEeecccC-ChHH
Q 005908          545 LKPYTMA-------VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (670)
Q Consensus       545 l~~~~~~-------~~~~~~~~~~~~~~----~~~~vSA~~g-~v~~  579 (670)
                      +......       ...+..+...++..    +++++||.+| |+.+
T Consensus       153 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         153 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            8753222       23444555555543    4789999999 9853

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=5e-11  Score=115.32  Aligned_cols=153  Identities=15%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------------CCCCC-------cccceEEEEEEcCC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE------------------------NYAPT-------TGEQYAVNVVDQPG  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~------------------------~~~~t-------~~~~~~~~~vd~~g  469 (670)
                      +..++|+|+|..++|||||+.+|+...-..                        ..+..       .........+.+  
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--   99 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--   99 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc--
Confidence            456899999999999999999995311100                        00000       000011112223  


Q ss_pred             CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccH------HHHHHHHHHHHHhcCCCCCCC-cEEEEEeC
Q 005908          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW------KRTKELLVEVARLGEDSGYGV-PCLLIASK  542 (670)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~------~~~~~~~~~i~~~~~~~~~~~-piilv~NK  542 (670)
                      ....+.++|++|+..|-..  .......+|++++|+|+.++.--      .+..+.+..+...      ++ ++++++||
T Consensus       100 ~~~~i~~iDtPGH~df~~~--~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~------~i~~iiv~iNK  171 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTN--MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GINHLVVVINK  171 (245)
T ss_dssp             SSEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCSSEEEEEEC
T ss_pred             ccceeeeecccccccchhh--hhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc------CCCeEEEEEEc
Confidence            3356788999999888776  67788999999999999886211      0223333333333      45 47899999


Q ss_pred             CCCCCCccc-------HHHHHHHHHHh-CCC-----CcEEeecccC-ChHHHHHH
Q 005908          543 DDLKPYTMA-------VQDSARVTQEL-GIE-----PPIPVSMKSK-DLNNVFSR  583 (670)
Q Consensus       543 ~Dl~~~~~~-------~~~~~~~~~~~-~~~-----~~~~vSA~~g-~v~~l~~~  583 (670)
                      +|+......       .++...+.+++ +..     +++++||++| |+.++++.
T Consensus       172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            999753322       12223333333 221     5899999999 99776543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=5.2e-11  Score=111.82  Aligned_cols=84  Identities=14%  Similarity=0.186  Sum_probs=58.0

Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (670)
                      +.+.|.+++|+++.+|.--....++++-.....  ++|.+||.||+||.++..    .+....+...+....+++.+||+
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~----~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDD----LRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHH----HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHH----HHHHHHhhcccccceeEEEeccc
Confidence            467899999999887643333333566666666  899999999999975321    12233344444444579999999


Q ss_pred             cCCCchHHHH
Q 005908          160 TMIQVPDVFY  169 (670)
Q Consensus       160 ~~~gi~~l~~  169 (670)
                      ++.|++++.+
T Consensus        82 ~~~g~~~L~~   91 (225)
T d1u0la2          82 TGMGIEELKE   91 (225)
T ss_dssp             TCTTHHHHHH
T ss_pred             cchhHhhHHH
Confidence            9999876554

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.4e-10  Score=116.83  Aligned_cols=116  Identities=15%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             CcceE-EEEEcCCCCCHHHHHHHHHcCC--CCCC----------CC-----CC-CCCeEeCC--------------cccC
Q 005908           10 RTGVR-VVVVGDRGTGKSSLIAAAATES--VPEK----------VP-----PV-HAPTRLPP--------------DFYP   56 (670)
Q Consensus        10 ~~~~k-I~ivG~~~vGKSSLi~~l~~~~--~~~~----------~~-----~~-~~~~~~~~--------------~~~~   56 (670)
                      ...+| |+|+|+.++|||||+.+|+...  ....          .+     +. ........              ...+
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            45675 9999999999999999997211  1000          00     00 00000000              1123


Q ss_pred             CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~  129 (670)
                      +.+.++++||||+.+|.......++-+|++|+|+|+.+.-......  .++.....  ++|+++++||+|...
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~--~~~~a~~~--~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET--VLRQALGE--RIKPVVVINKVDRAL  162 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCEEEEEEECHHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH--HHHHHHHc--CCCeEEEEECccccc
Confidence            5678999999999999999999999999999999998876666544  45555555  799999999999653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.07  E-value=2.3e-10  Score=111.49  Aligned_cols=130  Identities=15%  Similarity=0.068  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCC-----CCCCcc-------------cceEEEEEEcCCCceEEEEEecCChhhH
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSEN-----YAPTTG-------------EQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~-----~~~t~~-------------~~~~~~~vd~~g~~~~~~i~d~~g~~~~  485 (670)
                      -+|+|+|..++|||||+.+++.......     ..+++.             .......+.+.  ..++.++||+|+..|
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~--~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET--TEEEEEECCCSSSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC--CeEEEEecCCchhhh
Confidence            3699999999999999999973211111     111111             11223334444  467888999999887


Q ss_pred             hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC
Q 005908          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE  565 (670)
Q Consensus       486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  565 (670)
                      -.-  ....++-+|++|+|+|+.++..-+... .++...++      ++|.++++||+|... ....+.++++.+.++..
T Consensus        85 ~~e--~~~~l~~~D~avlVvda~~Gv~~~T~~-~w~~a~~~------~lP~i~fINKmDr~~-ad~~~~l~ei~~~l~~~  154 (276)
T d2bv3a2          85 TIE--VERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEKY------KVPRIAFANKMDKTG-ADLWLVIRTMQERLGAR  154 (276)
T ss_dssp             STT--HHHHHHHCCEEEEEEETTTSSCHHHHH-HHHHHHTT------TCCEEEEEECTTSTT-CCHHHHHHHHHHTTCCC
T ss_pred             HHH--HHHHHHhhhheEEeccccCCcchhHHH-HHHHHHHc------CCCEEEEEecccccc-cccchhHHHHHHHhCCC
Confidence            765  778889999999999999997744444 44555544      799999999999876 33466777777788765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.02  E-value=2.8e-10  Score=110.27  Aligned_cols=115  Identities=17%  Similarity=-0.002  Sum_probs=68.2

Q ss_pred             ceeEEEEeCCCCccchhhhHH---H--hccCCEEEEEEECCChhhHHHHHHH-HHHH--HHhcCCCCCEEEEEeCCCCCC
Q 005908           58 RVPVTIIDTSSSLENKGKLNE---E--LKRADAVVLTYACNQQSTLSRLSSY-WLPE--LRRLEIKVPIIVAGCKLDLRG  129 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~---~--~~~ad~ii~v~d~~~~~s~~~~~~~-~~~~--l~~~~~~~pvilv~NK~Dl~~  129 (670)
                      ...+.++|+||+..+......   .  ....+.+++++|+............ +...  ..+.  ..|.++|.||+|+..
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~  171 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLS  171 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCC
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeecccccc
Confidence            446999999998765433221   2  2345789999997543322222111 1111  1223  789999999999986


Q ss_pred             CCCccch------------------------hhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908          130 DHNATSL------------------------EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (670)
Q Consensus       130 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~  174 (670)
                      .......                        ...+......+....+++++||++|+|++++++.+.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4211000                        00011111223333479999999999999999988765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=8.4e-10  Score=110.73  Aligned_cols=154  Identities=21%  Similarity=0.193  Sum_probs=84.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhc------CCCCC-CCCCCcc-------------------cceEEEEEEcCC---C
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLE------RPFSE-NYAPTTG-------------------EQYAVNVVDQPG---G  470 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~------~~~~~-~~~~t~~-------------------~~~~~~~vd~~g---~  470 (670)
                      ..+.++|+|.|+||||||||+++|..      ..+.. ..+|++.                   ....+......|   +
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg  130 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  130 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence            34679999999999999999999973      22211 1111111                   111122211111   0


Q ss_pred             ---------------ceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc
Q 005908          471 ---------------NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP  535 (670)
Q Consensus       471 ---------------~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p  535 (670)
                                     .....++.|.|...-     -......+|.+++|.+...++..+..+.-+.+           .+
T Consensus       131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~-----e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e-----------~a  194 (327)
T d2p67a1         131 ASQRARELMLLCEAAGYDVVIVETVGVGQS-----ETEVARMVDCFISLQIAGGGDDLQGIKKGLME-----------VA  194 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTH-----HHHHHTTCSEEEEEECC------CCCCHHHHH-----------HC
T ss_pred             chhhhhHHHHHHHhcCCCeEEEeecccccc-----chhhhhccceEEEEecCCCchhhhhhchhhhc-----------cc
Confidence                           012334555443111     12345679999999988776554433333322           23


Q ss_pred             EEEEEeCCCCCCCcccHHHHHHHHH---HhC------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          536 CLLIASKDDLKPYTMAVQDSARVTQ---ELG------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       536 iilv~NK~Dl~~~~~~~~~~~~~~~---~~~------~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      =++|+||+|+...........++..   .+.      .+|++.|||++| |+++|++.|.+...
T Consensus       195 Di~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         195 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            4788899998874322222222222   111      136999999999 99999999987654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=1.9e-10  Score=108.32  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=53.7

Q ss_pred             hccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-CeEEEeC
Q 005908           80 LKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECS  157 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S  157 (670)
                      +.+.|.+++|+++.++. +...+. +++-.....  +++.+||.||+||.++..   ..+.+..+...+..+ .+++.+|
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~id-R~Lv~a~~~--~i~pvIvlnK~DL~~~~~---~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLD-RFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHH-HHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHTCCEEECC
T ss_pred             ccccCEEEEEEECCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEecccccccHH---HHHHHHHHHHHHhhccccceeee
Confidence            46789999999988764 444444 465555555  899999999999976422   222233333322211 3789999


Q ss_pred             cccCCCchH
Q 005908          158 ATTMIQVPD  166 (670)
Q Consensus       158 A~~~~gi~~  166 (670)
                      |+++.|+++
T Consensus        82 a~~~~gl~~   90 (231)
T d1t9ha2          82 SKDQDSLAD   90 (231)
T ss_dssp             HHHHTTCTT
T ss_pred             cCChhHHHH
Confidence            999888864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.88  E-value=2e-09  Score=103.96  Aligned_cols=110  Identities=10%  Similarity=0.005  Sum_probs=65.6

Q ss_pred             EEEEEecCChhhHhhhhchHh---hcccccEEEEEEECCCcccHHHHHHHH---HHH-HHhcCCCCCCCcEEEEEeCCCC
Q 005908          473 KTLILQEIPEEGVKKILSNKE---ALASCDVTIFVYDSSDEYSWKRTKELL---VEV-ARLGEDSGYGVPCLLIASKDDL  545 (670)
Q Consensus       473 ~~~i~d~~g~~~~~~~~~~~~---~~~~ad~vllv~D~s~~~s~~~~~~~~---~~i-~~~~~~~~~~~piilv~NK~Dl  545 (670)
                      .+.++|++|+........+..   .....+++++++|+.....-+......   ..+ .+.      ..|.++|+||+|+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~------~~~~ivvinK~D~  169 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKVDL  169 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCGGG
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh------CCCceeeeecccc
Confidence            466789999865544211111   123467899999987543322222111   111 122      5899999999999


Q ss_pred             CCCcccHHH------------------------HHH---H-HHHhCCCCcEEeecccC-ChHHHHHHHHHHH
Q 005908          546 KPYTMAVQD------------------------SAR---V-TQELGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (670)
Q Consensus       546 ~~~~~~~~~------------------------~~~---~-~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~  588 (670)
                      .........                        ...   . ....+..|++++||++| |+++|+..|.+.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         170 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            873221000                        000   0 11123457999999999 9999999988764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.86  E-value=4.8e-09  Score=105.02  Aligned_cols=152  Identities=12%  Similarity=0.127  Sum_probs=86.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCC------CC-CCCCCc-------------------ccceEEEE---------
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPF------SE-NYAPTT-------------------GEQYAVNV---------  464 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~------~~-~~~~t~-------------------~~~~~~~~---------  464 (670)
                      ..+.++|+|.|+||||||||+++|...-.      .. ..+|+.                   .....++.         
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg  127 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  127 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence            35679999999999999999999984211      00 001100                   01111111         


Q ss_pred             -----------EEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCC
Q 005908          465 -----------VDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG  533 (670)
Q Consensus       465 -----------vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~  533 (670)
                                 .+..|  ..+.++.|.|.-.-+     .....-+|.+++|.....++..+..+.   .+.+        
T Consensus       128 ~~~~~~~~i~~~~~~g--~d~iiiETVG~gq~e-----~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE--------  189 (323)
T d2qm8a1         128 VAAKTRETMLLCEAAG--FDVILVETVGVGQSE-----TAVADLTDFFLVLMLPGAGDELQGIKK---GIFE--------  189 (323)
T ss_dssp             HHHHHHHHHHHHHHTT--CCEEEEEECSSSSCH-----HHHHTTSSEEEEEECSCC------CCT---THHH--------
T ss_pred             hhHHHHHHHHhhccCC--CCeEEEeehhhhhhh-----hhhhcccceEEEEeeccchhhhhhhhh---hHhh--------
Confidence                       11111  234456666642211     123355999999999988765443222   2222        


Q ss_pred             CcEEEEEeCCCCCCCcccHHHH-HHHHHHh---------CCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908          534 VPCLLIASKDDLKPYTMAVQDS-ARVTQEL---------GIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (670)
Q Consensus       534 ~piilv~NK~Dl~~~~~~~~~~-~~~~~~~---------~~~~~~~vSA~~g-~v~~l~~~l~~~~~  589 (670)
                      .+=++|+||+|+.+........ ..+...+         ..+|++.+||++| |++++++.|.+...
T Consensus       190 ~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         190 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            3348899999988744332222 2222222         2247999999999 99999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=3.9e-09  Score=105.76  Aligned_cols=155  Identities=16%  Similarity=0.161  Sum_probs=85.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHc------CCC--CCCCCCCCCC------eEeCCc--cc------------------
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAAT------ESV--PEKVPPVHAP------TRLPPD--FY------------------   55 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~------~~~--~~~~~~~~~~------~~~~~~--~~------------------   55 (670)
                      .+.++|.|.|+||||||||+++|..      .+.  ....|+....      .++.+.  ..                  
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            4678999999999999999999972      221  0001110000      001100  00                  


Q ss_pred             ------------CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEe
Q 005908           56 ------------PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC  123 (670)
Q Consensus        56 ------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N  123 (670)
                                  ..++.+.+++|.|....   -......+|.+++|.+....+..+....    -+-+    ++=++|+|
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~----gi~e----~aDi~VvN  200 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKK----GLME----VADLIVIN  200 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCH----HHHH----HCSEEEEC
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhch----hhhc----cccEEEEE
Confidence                        12456777888775332   1246678999999987655444333221    1111    23478999


Q ss_pred             CCCCCCCCCccchhhhhhHHHHHhcc-----CCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          124 KLDLRGDHNATSLEEVMGPIMQQFRE-----IETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       124 K~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      |+|+............+......+..     ..+++.|||++|.||+++++.|.+..
T Consensus       201 KaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         201 KDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             eecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            99987532210011111222221111     13699999999999999999988754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.1e-08  Score=102.54  Aligned_cols=113  Identities=14%  Similarity=0.065  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------C-------CCcccceEEEEEE------------cCCCceEE
Q 005908          425 RCLLFGPQNAGKSALLNSFLERPFSENY-----------A-------PTTGEQYAVNVVD------------QPGGNKKT  474 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~~~~~~-----------~-------~t~~~~~~~~~vd------------~~g~~~~~  474 (670)
                      +|+|+|..++|||||+.+|+........           .       -|.......-...            ..+..+.+
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i   98 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI   98 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence            5999999999999999999732111100           0       0111111111111            12244567


Q ss_pred             EEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908          475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (670)
Q Consensus       475 ~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~  546 (670)
                      .++|++|+..|..-  ....++-+|++++|+|+.++...+....|.. ....      +.|+++++||+|..
T Consensus        99 nliDtPGh~dF~~e--v~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~~------~~p~i~viNKiDr~  161 (341)
T d1n0ua2          99 NLIDSPGHVDFSSE--VTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALGE------RIKPVVVINKVDRA  161 (341)
T ss_dssp             EEECCCCCCSSCHH--HHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHHT------TCEEEEEEECHHHH
T ss_pred             EEEcCCCcHHHHHH--HHHHHhhcCceEEEEecccCcchhHHHHHHH-HHHc------CCCeEEEEECcccc
Confidence            88999999887765  6778899999999999999977555444443 4443      79999999999974

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=1.8e-08  Score=100.16  Aligned_cols=85  Identities=15%  Similarity=0.208  Sum_probs=57.1

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeC-Cccc------------C---CceeEEEEeCCCCcc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLP-PDFY------------P---DRVPVTIIDTSSSLE   71 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~-~~~~------------~---~~~~~~i~Dt~G~~~   71 (670)
                      ...+||.|||.||||||||+|++++...  ..++|.++-.-... +.+.            .   ....+.++|.||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3568999999999999999999997643  44455432111100 0110            1   134689999998653


Q ss_pred             ch-------hhhHHHhccCCEEEEEEECCC
Q 005908           72 NK-------GKLNEELKRADAVVLTYACNQ   94 (670)
Q Consensus        72 ~~-------~~~~~~~~~ad~ii~v~d~~~   94 (670)
                      ..       ...-..++.+|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            21       234477899999999998755

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.72  E-value=1.4e-08  Score=101.62  Aligned_cols=153  Identities=13%  Similarity=0.082  Sum_probs=88.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcC------C---CCCC-CCCC-----CC-CeEeCCcc-------------------
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATE------S---VPEK-VPPV-----HA-PTRLPPDF-------------------   54 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~------~---~~~~-~~~~-----~~-~~~~~~~~-------------------   54 (670)
                      .+.++|.|.|+||||||||+++|...      +   ...+ .++.     .+ ..+.....                   
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            45789999999999999999999742      1   0000 0000     00 01000000                   


Q ss_pred             -----------cCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEe
Q 005908           55 -----------YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC  123 (670)
Q Consensus        55 -----------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N  123 (670)
                                 ...++.+.|+.|.|.....   .....-+|.+++|......+..+.+.   ...+     .++=++|+|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k---~gil-----E~aDi~vvN  197 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK---KGIF-----ELADMIAVN  197 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC---TTHH-----HHCSEEEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhh---hhHh-----hhhheeeEe
Confidence                       0135678889998854322   23455699999999987665443321   1111     234489999


Q ss_pred             CCCCCCCCCccchhhhhhHHHHHhc--------cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908          124 KLDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV  175 (670)
Q Consensus       124 K~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~~~gi~~l~~~i~~~~  175 (670)
                      |+|+.+....  .......+...+.        ...+++.|||++|.||+++++.|.+..
T Consensus       198 KaD~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         198 KADDGDGERR--ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             CCSTTCCHHH--HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccccchHH--HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            9998764322  1111122222211        123799999999999999999997764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=6.6e-08  Score=95.97  Aligned_cols=87  Identities=17%  Similarity=0.116  Sum_probs=54.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCCc-ccceEEEEEEcCCC---------------ceEEEEEecCCh
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTT-GEQYAVNVVDQPGG---------------NKKTLILQEIPE  482 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~t~-~~~~~~~~vd~~g~---------------~~~~~i~d~~g~  482 (670)
                      ...+||+|||.||||||||+|++++....  ..|+-|| .....  .+.+|..               ...+.+.|.+|-
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g--~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL   85 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA--KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   85 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE--EEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeE--EEeccccchhhhhhcccCCceecccceeeecccc
Confidence            35589999999999999999999987643  3333233 22222  2333321               124556777762


Q ss_pred             h----hHhh-hhchHhhcccccEEEEEEECCC
Q 005908          483 E----GVKK-ILSNKEALASCDVTIFVYDSSD  509 (670)
Q Consensus       483 ~----~~~~-~~~~~~~~~~ad~vllv~D~s~  509 (670)
                      .    +-.. -.+....++.||++++|+|+.+
T Consensus        86 v~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          86 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1    1111 1124677899999999999865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.64  E-value=1.2e-07  Score=93.05  Aligned_cols=86  Identities=17%  Similarity=0.152  Sum_probs=50.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC---------------ceEEEEEecCCh----h
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPE----E  483 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~---------------~~~~~i~d~~g~----~  483 (670)
                      .+||+|||.||||||||+|++++........|.++..-.+-.+.+|..               ...+.+.|.+|-    .
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999988765444343221111112322211               013445666662    2


Q ss_pred             hHhhh-hchHhhcccccEEEEEEECC
Q 005908          484 GVKKI-LSNKEALASCDVTIFVYDSS  508 (670)
Q Consensus       484 ~~~~~-~~~~~~~~~ad~vllv~D~s  508 (670)
                      +-..+ .+-.+.+++||++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            22222 12467889999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.63  E-value=5.4e-08  Score=97.94  Aligned_cols=86  Identities=16%  Similarity=0.098  Sum_probs=44.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-Cc-ccceE--EEEEEcC----------C--------CceEEEEEecCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQYA--VNVVDQP----------G--------GNKKTLILQEIP  481 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-t~-~~~~~--~~~vd~~----------g--------~~~~~~i~d~~g  481 (670)
                      ++|+++|.||||||||+|+|++.+......| || .....  ....+.+          .        ....+.++|.+|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998765443334 22 11111  1111111          0        012355677776


Q ss_pred             hhh-----HhhhhchHhhcccccEEEEEEECCC
Q 005908          482 EEG-----VKKILSNKEALASCDVTIFVYDSSD  509 (670)
Q Consensus       482 ~~~-----~~~~~~~~~~~~~ad~vllv~D~s~  509 (670)
                      --.     -....+....++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            311     1111123456789999999999864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=2.5e-07  Score=90.89  Aligned_cols=81  Identities=21%  Similarity=0.393  Sum_probs=52.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeE---eCCc----------ccCCc---eeEEEEeCCCCccchh
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR---LPPD----------FYPDR---VPVTIIDTSSSLENKG   74 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~---~~~~----------~~~~~---~~~~i~Dt~G~~~~~~   74 (670)
                      .+||.|||.||||||||+|++++.+... ++|.++-.-.   ..+.          +...+   ..+.++|.||.-...+
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            4799999999999999999999776322 2333221111   1100          11111   3588999999754322


Q ss_pred             -------hhHHHhccCCEEEEEEEC
Q 005908           75 -------KLNEELKRADAVVLTYAC   92 (670)
Q Consensus        75 -------~~~~~~~~ad~ii~v~d~   92 (670)
                             ..-..++.+|+++.|+|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                   234778999999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.3e-07  Score=93.99  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEE--------------------------------------
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVN--------------------------------------  463 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~--------------------------------------  463 (670)
                      .++|+|+|..++|||||+|+|+|..+.+... ++|+.-..+.                                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            4689999999999999999999988755443 4443111111                                      


Q ss_pred             ------------EEEcCCCceEEEEEecCChh-------------hHhhhhchHhhccccc-EEEEEEECCCcccHHHHH
Q 005908          464 ------------VVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASCD-VTIFVYDSSDEYSWKRTK  517 (670)
Q Consensus       464 ------------~vd~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~ad-~vllv~D~s~~~s~~~~~  517 (670)
                                  .+..+ ....+.++|++|-.             ....+  ...++...+ ++++|.+++...+-....
T Consensus       106 ~~~~~~~~~i~l~~~~p-~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~--~~~y~~~~~~~il~v~~a~~~~~~~~~~  182 (299)
T d2akab1         106 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             STTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH--HHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             CCcCcCCccEEEEEcCC-CCCCeeEEccCCccccccCCcchhHHHHHHHH--HHHHhcCccceeeeecccccchhhhHHH
Confidence                        11112 12235578888831             11223  455666666 556666776654444445


Q ss_pred             HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          518 ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       518 ~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      .+.+.+...      ..++++|.||+|+.+..
T Consensus       183 ~~~~~~~~~------~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         183 KIAKEVDPQ------GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHCTT------CSSEEEEEECGGGSCTT
T ss_pred             HHHHHhCcC------CCceeeEEeccccccch
Confidence            555554332      57899999999998754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.51  E-value=1.7e-07  Score=93.63  Aligned_cols=118  Identities=15%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceE----------------------------------------
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYA----------------------------------------  461 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~----------------------------------------  461 (670)
                      .++|+|+|..++|||||+|+|+|.++.++.. ++|+.-..                                        
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            4689999999999999999999998754433 33321111                                        


Q ss_pred             ------------------EEEEEcCCCceEEEEEecCChhh-------------HhhhhchHhhcccccEEEEEE-ECCC
Q 005908          462 ------------------VNVVDQPGGNKKTLILQEIPEEG-------------VKKILSNKEALASCDVTIFVY-DSSD  509 (670)
Q Consensus       462 ------------------~~~vd~~g~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~ad~vllv~-D~s~  509 (670)
                                        ...+..+ ....+.++|++|-..             ...+  ...++..++.+++++ ++..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~--~~~yi~~~~~~il~v~~~~~  180 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRM--VMAYIKKQNAIIVAVTPANT  180 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHH--HHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHhcCCCCcccccceEEEecCC-CCCCceEecCCCccccccCCcchhHHHHHHHH--HHHHHhCCCceeEEeecccc
Confidence                              1112222 223455788888321             2223  567788898766555 5544


Q ss_pred             cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908          510 EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (670)
Q Consensus       510 ~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~  549 (670)
                      ...-.....+.+.+...      ..++++|.||+|.....
T Consensus       181 ~~~~~~~~~~~~~~~~~------~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         181 DLANSDALQLAKEVDPE------GKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             CSTTCSHHHHHHHHCSS------CSSEEEEEECTTSSCSS
T ss_pred             cccccHHHHHHHHhCcC------CCeEEEEEeccccccch
Confidence            33323334444444322      57899999999988654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=5.2e-08  Score=98.03  Aligned_cols=82  Identities=24%  Similarity=0.314  Sum_probs=45.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCC-----CCeE---------eCCcccC---------CceeEEEEeCCC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVH-----APTR---------LPPDFYP---------DRVPVTIIDTSS   68 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~-----~~~~---------~~~~~~~---------~~~~~~i~Dt~G   68 (670)
                      +||+|||.||||||||+|+|++.+. +.++|-++     +...         ....+..         ....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998763 33344221     1110         0001111         235699999999


Q ss_pred             Cccchh----hhH---HHhccCCEEEEEEECCC
Q 005908           69 SLENKG----KLN---EELKRADAVVLTYACNQ   94 (670)
Q Consensus        69 ~~~~~~----~~~---~~~~~ad~ii~v~d~~~   94 (670)
                      ......    ...   ..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            753221    112   45678999999999864

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.44  E-value=2.8e-07  Score=91.92  Aligned_cols=116  Identities=22%  Similarity=0.235  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCc------------------------c-c----------
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPD------------------------F-Y----------   55 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~------------------------~-~----------   55 (670)
                      .+|+|||..++|||||+|+|++..+.+.  .+.+...+.+...                        + +          
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR  104 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence            4899999999999999999999886332  2222212211100                        0 0          


Q ss_pred             -----------------------CCceeEEEEeCCCCccc-------------hhhhHHHhccCCEEEEEE-ECCChhhH
Q 005908           56 -----------------------PDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTY-ACNQQSTL   98 (670)
Q Consensus        56 -----------------------~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~-d~~~~~s~   98 (670)
                                             ..-..+.++||||....             ..+...++..++.+++++ +......-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~  184 (306)
T d1jwyb_         105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN  184 (306)
T ss_dssp             HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred             HHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccc
Confidence                                   01235789999997532             234457888999876666 43332222


Q ss_pred             HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC
Q 005908           99 SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH  131 (670)
Q Consensus        99 ~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~  131 (670)
                      .... .+.+.+...  ..++++|.||+|.....
T Consensus       185 ~~~~-~~~~~~~~~--~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         185 SDAL-QLAKEVDPE--GKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             CSHH-HHHHHHCSS--CSSEEEEEECTTSSCSS
T ss_pred             cHHH-HHHHHhCcC--CCeEEEEEeccccccch
Confidence            2222 255555433  56899999999987543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=4.3e-07  Score=90.22  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcc----------------c------------------
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDF----------------Y------------------   55 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~----------------~------------------   55 (670)
                      ..+|+|+|..++|||||+|+|++..+.+.  .+.+...+.+...-                .                  
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45899999999999999999999886333  23222222111000                0                  


Q ss_pred             ----------------CCceeEEEEeCCCCccc-------------hhhhHHHhccCCE-EEEEEECCChhhHHHHHHHH
Q 005908           56 ----------------PDRVPVTIIDTSSSLEN-------------KGKLNEELKRADA-VVLTYACNQQSTLSRLSSYW  105 (670)
Q Consensus        56 ----------------~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~-ii~v~d~~~~~s~~~~~~~~  105 (670)
                                      .....+.++||||....             ..+...++...+. +++|.+.....+-.... .+
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~-~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH-HH
Confidence                            01224789999997531             1234466777775 45555655444433333 25


Q ss_pred             HHHHHhcCCCCCEEEEEeCCCCCCCC
Q 005908          106 LPELRRLEIKVPIIVAGCKLDLRGDH  131 (670)
Q Consensus       106 ~~~l~~~~~~~pvilv~NK~Dl~~~~  131 (670)
                      .+.+...  ..++++|.||+|...+.
T Consensus       185 ~~~~~~~--~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDPQ--GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCTT--CSSEEEEEECGGGSCTT
T ss_pred             HHHhCcC--CCceeeEEeccccccch
Confidence            5555444  57899999999987653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.03  E-value=2.7e-06  Score=82.93  Aligned_cols=58  Identities=22%  Similarity=0.308  Sum_probs=37.7

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   70 (670)
                      ....++|+|+|.||||||||+|+|.+.+....  .|+   .|+-...+ ..+-.+.++||||.-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG---~Tr~~~~i-~~~~~~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG---ITTSQQWV-KVGKELELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CCE-EETTTEEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCccc---ccccceEE-ECCCCeEEecCCCcc
Confidence            45679999999999999999999999874332  444   33311111 123459999999974

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=4.7e-05  Score=70.56  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             hcccccEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC-CCCcEEee
Q 005908          494 ALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIPVS  571 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vS  571 (670)
                      ...+.|.+++|+.+.+| .+...+.+++-.....      ++|.+||+||+||.+... .+...++...+. ..+++.+|
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~------~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN------ELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSCEEECC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc------CCCEEEEEeCcccCCHHH-HHHHHHhhcccccceeEEEec
Confidence            45788999999998875 4556667777666555      799999999999987432 223333333332 23689999


Q ss_pred             cccC-ChHHHHHHH
Q 005908          572 MKSK-DLNNVFSRI  584 (670)
Q Consensus       572 A~~g-~v~~l~~~l  584 (670)
                      |+++ |+++|.+.+
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            9999 999988766

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=5.1e-05  Score=70.50  Aligned_cols=84  Identities=15%  Similarity=0.229  Sum_probs=61.6

Q ss_pred             hcccccEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHH---HHHhCCCCcEE
Q 005908          494 ALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV---TQELGIEPPIP  569 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~  569 (670)
                      ...+.|.+++|+++.++ .+...+.+++-.....      +++.+||+||+||.+........+.+   ...++++ ++.
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~------~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-v~~   79 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-VYL   79 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-EEE
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc------CCCEEEEEecccccccHHHHHHHHHHHHHHhhcccc-cee
Confidence            45689999999999875 5666667766655544      79999999999998754433333333   3445766 999


Q ss_pred             eecccC-ChHHHHHHH
Q 005908          570 VSMKSK-DLNNVFSRI  584 (670)
Q Consensus       570 vSA~~g-~v~~l~~~l  584 (670)
                      +||+++ |+++|.+.+
T Consensus        80 ~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          80 TSSKDQDSLADIIPHF   95 (231)
T ss_dssp             CCHHHHTTCTTTGGGG
T ss_pred             eecCChhHHHHHHHhh
Confidence            999999 998877654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.00047  Score=64.20  Aligned_cols=98  Identities=9%  Similarity=0.022  Sum_probs=53.3

Q ss_pred             eeEEEEeCCCCccchhhhHHH--------hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908           59 VPVTIIDTSSSLENKGKLNEE--------LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (670)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~--------~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~  130 (670)
                      ....++.+.|..+........        .-..+.++.|+|+............+...+...     =++|.||+|+..+
T Consensus        90 ~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A-----D~ivlNK~Dl~~~  164 (222)
T d1nija1          90 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA-----DRILLTKTDVAGE  164 (222)
T ss_dssp             CSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC-----SEEEEECTTTCSC
T ss_pred             cceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhC-----CcccccccccccH
Confidence            345788888875544333211        123588999999876543322221233334332     2689999999753


Q ss_pred             CCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908          131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (670)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~  168 (670)
                      .      +.++...+.++...+++++| .-...++.+|
T Consensus       165 ~------~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         165 A------EKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             T------HHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             H------HHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence            1      23444555555444677655 2233455443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.29  E-value=0.00039  Score=63.63  Aligned_cols=92  Identities=16%  Similarity=0.105  Sum_probs=50.3

Q ss_pred             ceeEEEEeCCCCccchhhh-H------HHh-----ccCCEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCEEEEEeC
Q 005908           58 RVPVTIIDTSSSLENKGKL-N------EEL-----KRADAVVLTYACNQQST-LSRLSSYWLPELRRLEIKVPIIVAGCK  124 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~-~------~~~-----~~ad~ii~v~d~~~~~s-~~~~~~~~~~~l~~~~~~~pvilv~NK  124 (670)
                      ++.+.++||+|........ .      ...     ...+-+++|+|.+.... ...    .....+..  + +-=++.||
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~----~~~~~~~~--~-~~~lI~TK  160 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ----AKKFHEAV--G-LTGVIVTK  160 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH----HHHHHHHH--C-CSEEEEEC
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHH----HHHhhhcc--C-CceEEEec
Confidence            4679999999965433221 1      111     24578999999876542 222    22223322  1 22478999


Q ss_pred             CCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908          125 LDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus       125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      .|-...-..      +-.+....+  .|+..++  +|++.++
T Consensus       161 lDet~~~G~------~l~~~~~~~--~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         161 LDGTAKGGV------LIPIVRTLK--VPIKFVG--VGEGPDD  192 (207)
T ss_dssp             TTSSCCCTT------HHHHHHHHC--CCEEEEE--CSSSTTC
T ss_pred             cCCCCCccH------HHHHHHHHC--CCEEEEe--CCCChHh
Confidence            997543222      233444554  2555555  4555554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00063  Score=62.40  Aligned_cols=143  Identities=19%  Similarity=0.123  Sum_probs=74.9

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-C--CCCCeE-------------eCCccc----------------
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-P--VHAPTR-------------LPPDFY----------------   55 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-~--~~~~~~-------------~~~~~~----------------   55 (670)
                      ...++..|+++|++||||||.+-+|...-...... .  +.++++             ....+.                
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   86 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV   86 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence            34566789999999999999877765211000000 0  000011             000000                


Q ss_pred             ----CCceeEEEEeCCCCccchhhh-H---H---Hhc-----cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE
Q 005908           56 ----PDRVPVTIIDTSSSLENKGKL-N---E---ELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII  119 (670)
Q Consensus        56 ----~~~~~~~i~Dt~G~~~~~~~~-~---~---~~~-----~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi  119 (670)
                          .+++.+.|+||+|........ .   .   ...     ..+-+++|+|.+..  .+.+.+ .....+..   -+-=
T Consensus        87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~-~~~~~~~~---~~~~  160 (213)
T d1vmaa2          87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTG  160 (213)
T ss_dssp             HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCE
T ss_pred             HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhh-hhhhcccc---CCce
Confidence                135679999999965433221 1   1   121     14679999997543  233221 33333333   2345


Q ss_pred             EEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908          120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus       120 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      ++.+|.|-...-.      .+-.+....+  .|+..++  +|++|++
T Consensus       161 lI~TKlDe~~~~G------~~l~~~~~~~--~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         161 IILTKLDGTAKGG------ITLAIARELG--IPIKFIG--VGEKAED  197 (213)
T ss_dssp             EEEECGGGCSCTT------HHHHHHHHHC--CCEEEEE--CSSSGGG
T ss_pred             EEEecccCCCccc------HHHHHHHHHC--CCEEEEe--CCCCccc
Confidence            8899999653211      2233344444  2566665  5777765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.0017  Score=59.29  Aligned_cols=143  Identities=12%  Similarity=0.065  Sum_probs=76.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CCcc-------------cceEEEEEEcCCC------------
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA------PTTG-------------EQYAVNVVDQPGG------------  470 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~------~t~~-------------~~~~~~~vd~~g~------------  470 (670)
                      .+.-|+++|++||||||.+-+|...-......      .|-+             .+..+.....+..            
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a   87 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA   87 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHH
Confidence            35678899999999999998886321110000      1111             1122222222211            


Q ss_pred             ---ceEEEEEecCChhh-----HhhhhchHhhcc-----cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEE
Q 005908          471 ---NKKTLILQEIPEEG-----VKKILSNKEALA-----SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL  537 (670)
Q Consensus       471 ---~~~~~i~d~~g~~~-----~~~~~~~~~~~~-----~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pii  537 (670)
                         ...+.++||+|...     .+.+.......+     ..+-+++|.|++..  .+.+..........       .+-=
T Consensus        88 ~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-------~~~~  158 (211)
T d2qy9a2          88 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-------GLTG  158 (211)
T ss_dssp             HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS-------CCCE
T ss_pred             HHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc-------CCce
Confidence               23467899999321     122211222232     24678999999865  22233333322222       2334


Q ss_pred             EEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          538 LIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       538 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      ++.||.|-..+   .-.+-.++...+.+ +.++|  +| +|++
T Consensus       159 lIlTKlDe~~~---~G~~l~~~~~~~~P-i~~i~--~Gq~v~D  195 (211)
T d2qy9a2         159 ITLTKLDGTAK---GGVIFSVADQFGIP-IRYIG--VGERIED  195 (211)
T ss_dssp             EEEECCTTCTT---TTHHHHHHHHHCCC-EEEEE--CSSSGGG
T ss_pred             EEEeecCCCCC---ccHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            67799997653   34455667777876 77776  45 5543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.17  E-value=0.00069  Score=62.05  Aligned_cols=94  Identities=14%  Similarity=-0.012  Sum_probs=51.6

Q ss_pred             CceeEEEEeCCCCccchh---hh---H--HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           57 DRVPVTIIDTSSSLENKG---KL---N--EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~---~~---~--~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                      .+..+.++||+|...+..   ..   .  ...-..+-+++|+|.+....-..   ......+..  + +-=++.||.|..
T Consensus        93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~---~~~~~~~~~--~-~~~lI~TKlDet  166 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYD---LASKFNQAS--K-IGTIIITKMDGT  166 (211)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHHC--T-TEEEEEECTTSC
T ss_pred             cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHH---HHhhhhccc--C-cceEEEecccCC
Confidence            456899999999643321   11   1  11234678899999776543222   133333332  2 234779999975


Q ss_pred             CCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      ..     . -.+-.+....+  .|+..+|  +|++|++
T Consensus       167 ~~-----~-G~~l~~~~~~~--lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 AK-----G-GGALSAVAATG--ATIKFIG--TGEKIDE  194 (211)
T ss_dssp             SC-----H-HHHHHHHHTTT--CCEEEEE--CSSSTTC
T ss_pred             Cc-----c-cHHHHHHHHHC--cCEEEEe--CCCCccc
Confidence            42     1 22233444444  2565565  5777765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.001  Score=60.80  Aligned_cols=93  Identities=20%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             ceeEEEEeCCCCccchhh-hH------HHhc-----cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Q 005908           58 RVPVTIIDTSSSLENKGK-LN------EELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~-~~------~~~~-----~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~  125 (670)
                      ++.+.++||+|....... ++      ..++     ..+-+++|.|.+...  +.+.+ .....+..   .+-=++.+|.
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~-~~~~~~~~---~~~~lIlTKl  164 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQ-AKLFHEAV---GLTGITLTKL  164 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHH-HHHHHHHS---CCCEEEEECC
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHH-Hhhhhhcc---CCceEEEeec
Confidence            467899999996433221 11      2222     246899999976543  22221 33333332   2345889999


Q ss_pred             CCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908          126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (670)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  166 (670)
                      |-...-.      .+-.+....+  .|+..++  +|++|++
T Consensus       165 De~~~~G------~~l~~~~~~~--~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAKGG------VIFSVADQFG--IPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTTTT------HHHHHHHHHC--CCEEEEE--CSSSGGG
T ss_pred             CCCCCcc------HHHHHHHHHC--CCEEEEe--CCCCccc
Confidence            9754321      2233444444  2566665  6777755

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=97.03  E-value=0.00034  Score=62.26  Aligned_cols=148  Identities=17%  Similarity=0.146  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhc-CCCCCHHHHHHHHHHH----hhhcCCCcccCCcChhhHHHHHHHH
Q 005908          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCF-NAPLQPAEIVGVKRVV----QEKQHDGVNDLGLTLSGFLFLHALF  267 (670)
Q Consensus       193 ~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~-~~~l~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~f~~~~~~~  267 (670)
                      -.++.++.+|...|.+++|.++.+|+........ ...........+....    .......-....++.+.|+.+....
T Consensus         3 ~~~~~l~~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~   82 (174)
T d2scpa_           3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEM   82 (174)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHTGGGTTTTSCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCcEeHHHHHHHHHHHhccccchhHHHHHhHHhhhhhccccccccCCCCcCcHHHHHHHHHhh
Confidence            4567889999999999999999999876654321 1122222233333222    2222223335568888888776543


Q ss_pred             HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (670)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~  347 (670)
                      +....                                     .......++..+|+.+|.|+||.|+.+|+..++.....
T Consensus        83 ~~~~~-------------------------------------~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~~~  125 (174)
T d2scpa_          83 VKNPE-------------------------------------AKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGL  125 (174)
T ss_dssp             TSCGG-------------------------------------GTHHHHTHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTC
T ss_pred             hcchh-------------------------------------hHHHHHHHHHHHHHHHCCCccccCCHHHHHHHHHHHhh
Confidence            32111                                     12345567899999999999999999999888765321


Q ss_pred             CCCCCCCCCCCccccCCCccchhhhHhhhh
Q 005908          348 SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       348 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      .+-...........+..|.|++..|+..|.
T Consensus       126 ~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~  155 (174)
T d2scpa_         126 DKTMAPASFDAIDTNNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             CGGGHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred             hhHHHHHHHhhcCCCCCCcEeHHHHHHHHH
Confidence            111111112234557888888888887765

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.0018  Score=59.24  Aligned_cols=145  Identities=14%  Similarity=0.084  Sum_probs=75.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CCcc-------------cceEEEEEEcCC-----------
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA------PTTG-------------EQYAVNVVDQPG-----------  469 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~------~t~~-------------~~~~~~~vd~~g-----------  469 (670)
                      ...+..|+++|++||||||.+-+|...-......      .|-+             .+..+.....+.           
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~   87 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA   87 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHH
Confidence            3456788999999999999877665321100000      1111             112222111110           


Q ss_pred             ----CceEEEEEecCChh-----hHhhhhchHhhcc-----cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc
Q 005908          470 ----GNKKTLILQEIPEE-----GVKKILSNKEALA-----SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP  535 (670)
Q Consensus       470 ----~~~~~~i~d~~g~~-----~~~~~~~~~~~~~-----~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p  535 (670)
                          ....+.++||+|..     ....+........     ..+-+++|+|++..  .+.+..........       .+
T Consensus        88 ~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-------~~  158 (213)
T d1vmaa2          88 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-------NV  158 (213)
T ss_dssp             HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-------CC
T ss_pred             HHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-------CC
Confidence                12346789999931     1222211122222     14678999999765  23333333332222       23


Q ss_pred             EEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          536 CLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       536 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      -=++.||.|-...   .-.+-.++...+.| +.+++  +| ++++
T Consensus       159 ~~lI~TKlDe~~~---~G~~l~~~~~~~~P-i~~i~--~Gq~v~D  197 (213)
T d1vmaa2         159 TGIILTKLDGTAK---GGITLAIARELGIP-IKFIG--VGEKAED  197 (213)
T ss_dssp             CEEEEECGGGCSC---TTHHHHHHHHHCCC-EEEEE--CSSSGGG
T ss_pred             ceEEEecccCCCc---ccHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            3467799997542   33455667777876 77776  45 6644

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0039  Score=57.64  Aligned_cols=24  Identities=38%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+-.+|.|--|+|||||+++++..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            355788899999999999999874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.84  E-value=0.0021  Score=58.74  Aligned_cols=143  Identities=13%  Similarity=0.026  Sum_probs=70.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcCC----CC--CCCCCCcc-------------cceEEEEEEcCC------------
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLERP----FS--ENYAPTTG-------------EQYAVNVVDQPG------------  469 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~~----~~--~~~~~t~~-------------~~~~~~~vd~~g------------  469 (670)
                      +.+--|+++|++||||||.+-+|...-    ..  ...-.|-+             .+..+.....+.            
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~   89 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK   89 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence            455678889999999999877775311    10  00001111             111122111111            


Q ss_pred             ---CceEEEEEecCChhhH-------hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 005908          470 ---GNKKTLILQEIPEEGV-------KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI  539 (670)
Q Consensus       470 ---~~~~~~i~d~~g~~~~-------~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv  539 (670)
                         ....+.++||+|...+       ..+. ........+-+++|+|++....  ............      +. -=++
T Consensus        90 ~~~~~~d~IlIDTaGr~~~~~~~~~~~el~-~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~~------~~-~~lI  159 (211)
T d1j8yf2          90 FLSEKMEIIIVDTAGRHGYGEEAALLEEMK-NIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQAS------KI-GTII  159 (211)
T ss_dssp             HHHTTCSEEEEECCCSCCTTCHHHHHHHHH-HHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHHC------TT-EEEE
T ss_pred             hhccCCceEEEecCCcCccchhhHHHHHHH-HHHhhcCCceEEEEEecccCcc--hHHHHhhhhccc------Cc-ceEE
Confidence               1235677888884211       1121 1122234577899999986532  222222222211      22 2356


Q ss_pred             EeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908          540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (670)
Q Consensus       540 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~  579 (670)
                      .||.|...   ..-.+-.++...+++ +.++|  +| +|++
T Consensus       160 ~TKlDet~---~~G~~l~~~~~~~lP-i~~it--~Gq~v~D  194 (211)
T d1j8yf2         160 ITKMDGTA---KGGGALSAVAATGAT-IKFIG--TGEKIDE  194 (211)
T ss_dssp             EECTTSCS---CHHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             EecccCCC---cccHHHHHHHHHCcC-EEEEe--CCCCccc
Confidence            89999765   244555666677766 77776  46 6644

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=96.65  E-value=0.0049  Score=54.83  Aligned_cols=153  Identities=14%  Similarity=0.165  Sum_probs=92.9

Q ss_pred             cHHHHHHHHHHHHH-hCCCCCCCCChHHHHHHhhhh---cCCCCCHHHHHHHHHHHhhhc------CCCcccCCcChhhH
Q 005908          191 KPRCVRALKRIFII-CDHDMDGALNDAELNEFQVKC---FNAPLQPAEIVGVKRVVQEKQ------HDGVNDLGLTLSGF  260 (670)
Q Consensus       191 ~~~~~~~l~ri~~~-~d~~~~~~l~~~el~~~q~~~---~~~~l~~~~~~~l~~~l~~~~------~~~~~~~~~~~~~f  260 (670)
                      ++..++.++++|.. .|.+++|.++..|+...-...   ............+........      ...-.+..++.+.|
T Consensus         3 t~~q~~~i~~~F~~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~   82 (185)
T d2sasa_           3 NDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEY   82 (185)
T ss_dssp             CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             CHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHhCcCCCCcEeeeHh
Confidence            44556778899985 699999999999987654432   222333333333333322111      11223445778888


Q ss_pred             HHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhh
Q 005908          261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED  340 (670)
Q Consensus       261 ~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~  340 (670)
                      +..+.........                                 ...+......++..+|+.+|.|++|.|+..|+..
T Consensus        83 ~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~  129 (185)
T d2sasa_          83 LAMWEKTIATCKS---------------------------------VADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQN  129 (185)
T ss_dssp             HHHHHHHHHTCCS---------------------------------GGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHH
T ss_pred             hHHHHHHhhhhhh---------------------------------hhhhhHHHHHHHHHHHHHHccCCCccCCHHHHHH
Confidence            7776544422211                                 0112233456889999999999999999999999


Q ss_pred             hhccCCCCC-CCCCCCCCCccccCCCccchhhhHhhhh
Q 005908          341 LFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       341 ~f~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      ++.... .+ -...........+..|.|++..|...|.
T Consensus       130 ~l~~~~-l~~~~~~~~f~~~D~d~dG~i~~~EF~~~~~  166 (185)
T d2sasa_         130 YCKNFQ-LQCADVPAVYNVITDGGKVTFDLNRYKELYY  166 (185)
T ss_dssp             HTTSSC-CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred             HHHHcC-CCHHHHHHHHHHcCCCCCCCCcHHHHHHHHH
Confidence            887542 22 1111112234557788899888887663

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.60  E-value=0.00011  Score=67.92  Aligned_cols=44  Identities=7%  Similarity=-0.056  Sum_probs=28.4

Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Q 005908           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL  127 (670)
Q Consensus        80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl  127 (670)
                      +...++.++++|.++...-..  ..+...++..  +.+++++.++++.
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r--~~~~~~~~~~--~~~~~~~~~~~~~  124 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERR--AMIFNFGEQN--GYKTFFVESICVD  124 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHH--HHHHHHHHHH--TCEEEEEEECCCC
T ss_pred             HHhcCCCEEEeecCCccHHHH--HHHHHHHHhc--CCeEEEEEeeccH
Confidence            344566778889877644332  2355555666  6788888888863

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.56  E-value=0.00073  Score=61.78  Aligned_cols=65  Identities=17%  Similarity=0.102  Sum_probs=37.7

Q ss_pred             ceeEEEEeCCCCccchhhh-H-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908           58 RVPVTIIDTSSSLENKGKL-N-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (670)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~-~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~  128 (670)
                      ++.+.++||+|........ .     ......+-+++|.|.+....-.+.   .....+..  + +-=++.+|.|-.
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~---~~~f~~~~--~-~~~~I~TKlDe~  162 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSV---ARAFDEKV--G-VTGLVLTKLDGD  162 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHH---HHHHHHHT--C-CCEEEEECGGGC
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHH---HHHHHhhC--C-CCeeEEeecCcc
Confidence            5578999999965433221 1     223456899999997665432221   11222222  1 223889999954

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.52  E-value=0.00055  Score=60.98  Aligned_cols=23  Identities=22%  Similarity=0.686  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.49  E-value=0.013  Score=53.00  Aligned_cols=87  Identities=13%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             EEEEEecCChhh-----HhhhhchHhhc-----ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 005908          473 KTLILQEIPEEG-----VKKILSNKEAL-----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK  542 (670)
Q Consensus       473 ~~~i~d~~g~~~-----~~~~~~~~~~~-----~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK  542 (670)
                      .+.++||+|...     ...+.......     ...+-+++|+|++...  +.+..........      +. -=++.||
T Consensus        90 d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~------~~-~~lI~TK  160 (207)
T d1okkd2          90 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV------GL-TGVIVTK  160 (207)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH------CC-SEEEEEC
T ss_pred             CEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhcc------CC-ceEEEec
Confidence            467789999421     11121111222     2346789999998763  2223222222222      22 2457799


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908          543 DDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (670)
Q Consensus       543 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA  572 (670)
                      .|-...   .-.+-.++...+.+ +.++|.
T Consensus       161 lDet~~---~G~~l~~~~~~~~P-i~~i~~  186 (207)
T d1okkd2         161 LDGTAK---GGVLIPIVRTLKVP-IKFVGV  186 (207)
T ss_dssp             TTSSCC---CTTHHHHHHHHCCC-EEEEEC
T ss_pred             cCCCCC---ccHHHHHHHHHCCC-EEEEeC
Confidence            997653   33455567777876 777763

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.00071  Score=62.08  Aligned_cols=85  Identities=13%  Similarity=0.132  Sum_probs=45.9

Q ss_pred             hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (670)
Q Consensus       494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~  573 (670)
                      .+...++.++++|++++.  ...+.++..+....     +.+++++.++++-..      ..+.............+++.
T Consensus        80 ~~~~~~~~~vi~d~~~~~--~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  146 (213)
T d1bifa1          80 FLSEEGGHVAVFDATNTT--RERRAMIFNFGEQN-----GYKTFFVESICVDPE------VIAANIVQVKLGSPDYVNRD  146 (213)
T ss_dssp             HHHTTCCSEEEEESCCCS--HHHHHHHHHHHHHH-----TCEEEEEEECCCCHH------HHHHHHHHHTTTSTTTTTSC
T ss_pred             HHHhcCCCEEEeecCCcc--HHHHHHHHHHHHhc-----CCeEEEEEeeccHHH------HHHHhHHHHhcCCCcccccc
Confidence            344556677889998862  23344444443332     578888888886321      12222222222222345555


Q ss_pred             cC-ChHHHHHHHHHHHhCC
Q 005908          574 SK-DLNNVFSRIIWAAEHP  591 (670)
Q Consensus       574 ~g-~v~~l~~~l~~~~~~~  591 (670)
                      .. ++.+..+.+......+
T Consensus       147 ~~~~~~~~~~~l~~~~~~~  165 (213)
T d1bifa1         147 SDEATEDFMRRIECYENSY  165 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHhhhhccccc
Confidence            55 6777777666655543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.36  E-value=0.00073  Score=60.16  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=96.31  E-value=0.0039  Score=53.25  Aligned_cols=138  Identities=22%  Similarity=0.315  Sum_probs=89.1

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      ++++....++.+|...|.+++|.++..++....... +..+....+..+...+...     ....++.+.|+........
T Consensus         3 lt~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~   76 (146)
T d1exra_           3 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDAD-----GNGTIDFPEFLSLMARKMK   76 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHCTT-----CSSSEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhc-CCCCCHHHHHHHHHhcCCC-----CCCcccHHHHHHHHHHHhh
Confidence            456667789999999999999999999998776543 5567777777766665322     3445788888776442221


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                                                               ...-.+-++.+|+.+|.|++|.++..|+..++......+
T Consensus        77 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~  115 (146)
T d1exra_          77 -----------------------------------------EQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL  115 (146)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCC
T ss_pred             -----------------------------------------ccChHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhcC
Confidence                                                     011234577889999999999999999988887543211


Q ss_pred             CCC--CCCCCCccccCCCccchhhhHh
Q 005908          350 WDE--APYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       350 ~~~--~~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      -..  .........+..|.+++..|+.
T Consensus       116 ~~~~~~~i~~~~D~d~dG~i~~~eF~~  142 (146)
T d1exra_         116 TDDEVDEMIREADIDGDGHINYEEFVR  142 (146)
T ss_dssp             CHHHHHHHHHHHCSSSSSSBCHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            110  0011112235556666665554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.29  E-value=0.016  Score=52.53  Aligned_cols=133  Identities=13%  Similarity=0.010  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC------CCCCCCCCCcc-------------cceEEEEEEcCC---------------C
Q 005908          425 RCLLFGPQNAGKSALLNSFLER------PFSENYAPTTG-------------EQYAVNVVDQPG---------------G  470 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~------~~~~~~~~t~~-------------~~~~~~~vd~~g---------------~  470 (670)
                      -|+++|++||||||.+-+|...      ......-.|-+             .+..+..+..+.               .
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~   91 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE   91 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhc
Confidence            3678999999999999887632      11111001111             112233332221               1


Q ss_pred             ceEEEEEecCChh-----hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 005908          471 NKKTLILQEIPEE-----GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL  545 (670)
Q Consensus       471 ~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl  545 (670)
                      ...+.++||+|..     ....+. ......+.+-+++|.|++.+.   +.........+..     + .-=++.+|.|-
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~-~~~~~~~~~~~llv~~a~~~~---~~~~~~~~f~~~~-----~-~~~~I~TKlDe  161 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELA-RLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV-----G-VTGLVLTKLDG  161 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHH-HHHHHHCCSEEEEEEEGGGTH---HHHHHHHHHHHHT-----C-CCEEEEECGGG
T ss_pred             cCcceeecccccchhhhhhHHHHH-HHHhhcCCceEEEEeccccch---hHHHHHHHHHhhC-----C-CCeeEEeecCc
Confidence            1256778999832     222221 122234568899999998762   2223333333321     1 12367799996


Q ss_pred             CCCcccHHHHHHHHHHhCCCCcEEee
Q 005908          546 KPYTMAVQDSARVTQELGIEPPIPVS  571 (670)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (670)
                      ..   ..-.+-.++...+.| +.+++
T Consensus       162 ~~---~~G~~l~~~~~~~~P-i~~i~  183 (207)
T d1ls1a2         162 DA---RGGAALSARHVTGKP-IYFAG  183 (207)
T ss_dssp             CS---SCHHHHHHHHHHCCC-EEEEC
T ss_pred             cc---cchHHHHHHHHHCCC-EEEEe
Confidence            54   234556667778876 66664

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.14  E-value=0.0015  Score=57.66  Aligned_cols=27  Identities=33%  Similarity=0.652  Sum_probs=24.0

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .++.++|+|.|+|||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999753

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.12  E-value=0.018  Score=48.69  Aligned_cols=104  Identities=16%  Similarity=0.284  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHc
Q 005908          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (670)
Q Consensus       191 ~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~  270 (670)
                      .++..+.++.+|...|.+++|.++..++...-+ .++..++..++..+..   .      .+..++++.|+.++.-..  
T Consensus         2 ~~~qi~e~~~~F~~~D~d~~G~I~~~el~~~l~-~lg~~~~~~el~~~~~---~------~~~~i~~~eF~~~~~~~~--   69 (142)
T d1wdcb_           2 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISE-QLGRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKL--   69 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHH-HHSSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCChHHHHHHHH-HhhcCCCHHHHHHHHH---h------ccCccccccccccccccc--
Confidence            456777889999999999999999999876643 4577788777666542   1      145688999987754211  


Q ss_pred             CCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                       ..                                      ....+-++..|+.||.|++|.++..|+..++...
T Consensus        70 -~~--------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~  105 (142)
T d1wdcb_          70 -SG--------------------------------------TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENM  105 (142)
T ss_dssp             -CS--------------------------------------CCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS
T ss_pred             -cc--------------------------------------cchhhhHHHhhhhhcccCCCcccHHHHHHHHHHc
Confidence             11                                      0012457889999999999999999999988764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.98  E-value=0.0014  Score=58.51  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -+|+|.|.+|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999753

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.88  E-value=0.011  Score=51.03  Aligned_cols=143  Identities=17%  Similarity=0.266  Sum_probs=90.3

Q ss_pred             cccccHHHHHHHHHHHHHhCCCC-CCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHH
Q 005908          187 EQTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       187 ~~~~~~~~~~~l~ri~~~~d~~~-~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~  265 (670)
                      ...++++....++.+|...|.++ +|.++..++...-+ .++...+..++..+...+...     ....++.+.|.....
T Consensus         5 ~~~Lt~~~~~~l~~~F~~~D~d~~dG~I~~~e~~~~l~-~lg~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~   78 (156)
T d1dtla_           5 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMR-MLGQNPTPEELQEMIDEVDED-----GSGTVDFDEFLVMMV   78 (156)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHCTT-----SSSSBCHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHcCCCCCCeECHHHHHHHHH-HcCCCCCHHHHHHHHHHhhcc-----CCCccchhhhhhhhh
Confidence            34567777888999999999985 89999999876644 357788888887776655433     233455555554422


Q ss_pred             HHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                      .......                                      ...-.+-++..|+.||.|++|.++..|+..++...
T Consensus        79 ~~~~~~~--------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~~~~~  120 (156)
T d1dtla_          79 RSMKDDS--------------------------------------KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT  120 (156)
T ss_dssp             HHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC
T ss_pred             hcccccc--------------------------------------cccHHHHHHHHHHHhCcCCCCcCcHHHHHHHHhhc
Confidence            1111000                                      01123457889999999999999999999988764


Q ss_pred             CCCCCCCC---CCCCCccccCCCccchhhhHh
Q 005908          346 PESPWDEA---PYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       346 ~~~p~~~~---~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      . .|+...   ........+..|.|++..|+.
T Consensus       121 ~-~~ls~~e~~~i~~~~D~d~dG~I~~~eF~~  151 (156)
T d1dtla_         121 G-ETITEDDIEELMKDGDKNNDGRIDYDEFLE  151 (156)
T ss_dssp             ---CCCHHHHHHHHHHHCTTSSSEEEHHHHHH
T ss_pred             C-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            2 222211   111122345667777776654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.87  E-value=0.0022  Score=57.71  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=22.6

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ++.++|+|+|+|||||||+...|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999975

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.026  Score=49.88  Aligned_cols=96  Identities=23%  Similarity=0.372  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccc
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (670)
                      ..|..+|...|.+++|.++.+|+...-+.+...+.....+..+...+...     .+..++.+.|+.+++..        
T Consensus        19 ~~L~~iF~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d-----~~g~i~~~EFl~~~~~~--------   85 (181)
T d1hqva_          19 SFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRE-----NKAGVNFSEFTGVWKYI--------   85 (181)
T ss_dssp             HHHHHHHHHHCTTCCSSBCHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCS-----SSSSBCHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCcccHHHHHHHhhccccc-----cccchhhhHHHhhhhhc--------
Confidence            45889999999999999999999888777766777887777777665432     24569999999886532        


Q ss_pred             hhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                                                              ..++..|+.||.+++|.++..|+..++..
T Consensus        86 ----------------------------------------~~~~~~f~~~D~~~~G~i~~~el~~~l~~  114 (181)
T d1hqva_          86 ----------------------------------------TDWQNVFRTYDRDNSGMIDKNELKQALSG  114 (181)
T ss_dssp             ----------------------------------------HHHHHHHHHHCTTCCSSBCHHHHHHHHHH
T ss_pred             ----------------------------------------cccccccccccccccchhhhHHHHHHHHH
Confidence                                                    22556777888888888888887777764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.77  E-value=0.0019  Score=57.57  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      -+|+|+|.+|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999863

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.76  E-value=0.0025  Score=54.81  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q 005908           15 VVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~   35 (670)
                      |+|.|.||||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999999653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.76  E-value=0.0024  Score=56.08  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      -.+|+|+|.|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999964

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.72  E-value=0.0068  Score=52.72  Aligned_cols=140  Identities=17%  Similarity=0.275  Sum_probs=87.8

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      +.++....|+.+|...|.+++|.++.+++..... ..+..+....+..+...+....     +..++...|.........
T Consensus        14 ls~~~i~el~~~F~~~D~d~~G~Is~~el~~~l~-~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~e~~~~~~~~~~   87 (162)
T d1topa_          14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMR-MLGQNPTKEELDAIIEEVDEDG-----SGTIDFEEFLVMMVRQMK   87 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHH-HTTCCCCHHHHHHHHHHHCTTS-----CCEEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHh-ccCCchhHHHHHhhhheeccCC-----CCCeeeehhhhhhhhhhh
Confidence            5667777899999999999999999999976544 4567777878877776654331     223555555444332221


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                      ...                                      .....+.++..|+.+|.|++|.++..|+..++.... .+
T Consensus        88 ~~~--------------------------------------~~~~~~~~~~aF~~~D~d~~G~Is~~e~~~~l~~~~-~~  128 (162)
T d1topa_          88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATG-EH  128 (162)
T ss_dssp             HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTT-CC
T ss_pred             hhc--------------------------------------ccCcHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhhC-CC
Confidence            100                                      112234567789999999999999999988887542 12


Q ss_pred             CCCC---CCCCCccccCCCccchhhhHh
Q 005908          350 WDEA---PYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       350 ~~~~---~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      ....   ........+..|.|++..|+.
T Consensus       129 ~~~~~~~~l~~~~D~d~dG~Is~~EF~~  156 (162)
T d1topa_         129 VTEEDIEDLMKDSDKNNDGRIDFDEFLK  156 (162)
T ss_dssp             CCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcEEHHHHHH
Confidence            1111   111123345667777766664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0022  Score=56.25  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      -|+|+|.+|||||||+++|+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.67  E-value=0.0055  Score=53.83  Aligned_cols=149  Identities=21%  Similarity=0.233  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCChHHHHHHhhhh---cCCCCCHHHHHHHHHHHhhhcCC------CcccCCcChhhHHHHH
Q 005908          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKC---FNAPLQPAEIVGVKRVVQEKQHD------GVNDLGLTLSGFLFLH  264 (670)
Q Consensus       194 ~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~---~~~~l~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~f~~~~  264 (670)
                      ..+.|+++|...|.+++|.++..|+...-...   .+.......+..+..........      ......++...+....
T Consensus         5 ~~~~l~~~F~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   84 (176)
T d1nyaa_           5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVT   84 (176)
T ss_dssp             HHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence            45668999999999999999999987665432   33344444555544433322111      1112234444444433


Q ss_pred             HHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                      ........                                  ...+...-.+.++.+|..+|.|++|.|+.+|+..++..
T Consensus        85 ~~~~~~~~----------------------------------~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~~~~  130 (176)
T d1nyaa_          85 ENLIFEQG----------------------------------EASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTA  130 (176)
T ss_dssp             HHHHSSSC----------------------------------HHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHH
T ss_pred             hhhhhhhh----------------------------------hhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHHHHHh
Confidence            32221100                                  01122334567888999999999999999999988876


Q ss_pred             CCCCCCCCCCCCCCccccCCCccchhhhHhhh
Q 005908          345 APESPWDEAPYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       345 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ..-.|............+..|.+++..|+..+
T Consensus       131 ~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~  162 (176)
T d1nyaa_         131 LGMSKAEAAEAFNQVDTNGNGELSLDELLTAV  162 (176)
T ss_dssp             TTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence            43222111111122345677788887776553

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.58  E-value=0.0031  Score=55.48  Aligned_cols=26  Identities=15%  Similarity=0.291  Sum_probs=23.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ++.++|+|.|+|||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.57  E-value=0.0036  Score=56.33  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=23.8

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      +.+.++|+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999999999764

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.56  E-value=0.0038  Score=36.43  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=25.0

Q ss_pred             HHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908          316 EFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (670)
Q Consensus       316 ~~~~~~f~~~~~~~~~~l~~~~~~~~f~  343 (670)
                      +=|.++|+-||+|.||+++-+|+.+++.
T Consensus         4 eELae~FRifDkNaDGyiD~eEl~~ilr   31 (34)
T d1ctda_           4 EELANAFRIFDKNADGYIDIEELGEILR   31 (34)
T ss_dssp             HHHHHHHHTTCCSSSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCcccccHHHHHHHHH
Confidence            4578999999999999999999988864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.52  E-value=0.0026  Score=55.90  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ++|+|+|+|||||||+.++|...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0074  Score=57.59  Aligned_cols=61  Identities=21%  Similarity=0.071  Sum_probs=39.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CC----CCCCCeEeC-CcccCCceeEEEEeCCCCcc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VP----PVHAPTRLP-PDFYPDRVPVTIIDTSSSLE   71 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~----~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~   71 (670)
                      +-.-|.|+|+.++|||+|+|.|++..+.-. .+    .+.+..... ......+..+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            445688999999999999999998774222 11    222221111 11234567899999999753

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.45  E-value=0.0036  Score=55.65  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ++|+|+|+||+||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988653

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.013  Score=49.29  Aligned_cols=107  Identities=16%  Similarity=0.210  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (670)
                      ++..+.|+++|...|.+++|.++..++...-+ ..+..+....+..+...+...     .+..++.+.|.........  
T Consensus         2 ~~~~~elk~~F~~~D~~~~G~Is~~e~~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~--   73 (141)
T d2obha1           2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMR-ALGFEPKKEEIKKMISEIDKE-----GTGKMNFGDFLTVMTQKMS--   73 (141)
T ss_dssp             HHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHH-HTTCCCCHHHHHHHHHHHTTT-----CCSEEEHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEeHHHHHHHHH-hcCCchhHHHHHHHHHhhccC-----CCCeechHHHHHHHHHHHh--
Confidence            45667889999999999999999999887644 457778887777777666322     2445788888777543221  


Q ss_pred             CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                                                             ......-++..|..+|.+++|.++.+++..++...
T Consensus        74 ---------------------------------------~~~~~~~l~~~f~~~d~~~~G~i~~~el~~~l~~~  108 (141)
T d2obha1          74 ---------------------------------------EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKEL  108 (141)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHT
T ss_pred             ---------------------------------------hhccHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence                                                   11123457788999999999999988888877653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0033  Score=55.02  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      +-|+|+|.+|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999985

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0024  Score=56.90  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q 005908           15 VVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~   35 (670)
                      |+|+|++|||||||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999854

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.35  E-value=0.0036  Score=56.24  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ++++|+|+|+||+||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999998654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.31  E-value=0.0053  Score=55.26  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .+...|+|+|+||+||||+..+|...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.30  E-value=0.0043  Score=55.28  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ++|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0066  Score=53.58  Aligned_cols=30  Identities=37%  Similarity=0.343  Sum_probs=24.2

Q ss_pred             CCCCCCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .....++..-|+++|.|||||||++.++..
T Consensus         7 ~~~~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2           7 SSLLSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCSSCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             cccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            334455667899999999999999999964

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.25  E-value=0.0046  Score=55.00  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.23  E-value=0.0042  Score=54.40  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=18.5

Q ss_pred             EE-EEEcCCCCCHHHHHHHHHc
Q 005908           14 RV-VVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI-~ivG~~~vGKSSLi~~l~~   34 (670)
                      || .|+|.+|||||||+++|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 6999999999999999974

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=95.20  E-value=0.0033  Score=56.24  Aligned_cols=154  Identities=14%  Similarity=0.096  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhc--CCCCCHHHHHHHHHHHhhh---cCCCcccCCcChhhHHHHHHH
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF--NAPLQPAEIVGVKRVVQEK---QHDGVNDLGLTLSGFLFLHAL  266 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~--~~~l~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~f~~~~~~  266 (670)
                      |...+.++++|...|.+++|.++-.|+...-....  .........+ +...+...   .........+...+|+.....
T Consensus         8 p~~~~~~k~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (187)
T d1uhka1           8 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAK-RHKDAVEAFFGGAGMKYGVETDWPAYIEGWKK   86 (187)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHhccCccHHH-HHHHHHHhhhhcccccccccccHHHHHHHHHH
Confidence            55567789999999999999999999875443321  1112222221 12222221   112223445667777766554


Q ss_pred             HHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC
Q 005908          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (670)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~  346 (670)
                      .......       +  ...                      .....-..+++.+|+.+|.|++|.++.+|+..++...-
T Consensus        87 ~~~~~~~-------~--~~~----------------------~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g  135 (187)
T d1uhka1          87 LATDELE-------K--YAK----------------------NEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAG  135 (187)
T ss_dssp             HHHHHHH-------H--HHT----------------------TCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHT
T ss_pred             HHHHHHH-------h--hhh----------------------hhHHHHHHHHHHHHHHHccCCCcccchHHHHHHHHHhC
Confidence            4322110       0  000                      01123345788999999999999999999988887532


Q ss_pred             C--CCCCCCCCCCCccccCCCccchhhhHhhhh
Q 005908          347 E--SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (670)
Q Consensus       347 ~--~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~  377 (670)
                      .  .+............+..|.|++..|+..+.
T Consensus       136 ~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~  168 (187)
T d1uhka1         136 IIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL  168 (187)
T ss_dssp             SCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence            1  111111222334567888899888876654

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.11  E-value=0.036  Score=46.80  Aligned_cols=107  Identities=18%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccc
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (670)
                      +.++.+|...|.+++|.++..|+...-+. ++..++..++..+.....   .+...+..++++.|..+........    
T Consensus         4 eelke~F~~~D~d~~G~I~~~el~~~l~~-lg~~~~~~e~~~~~~~~~---~d~~~~g~i~~~eF~~~~~~~~~~~----   75 (145)
T d2mysc_           4 DDFKEAFLLFDRTGDAKITASQVGDIARA-LGQNPTNAEINKILGNPS---KEEMNAAAITFEEFLPMLQAAANNK----   75 (145)
T ss_pred             HHHHHHHHHHcCCCCCeECHHHHHHHHHH-hhhcchhhhhHHHHHHHh---hcccccCccchhHHHHHHhhhhhcc----
Confidence            45788899999999999999998765443 455666666665555433   2223345578888876643222100    


Q ss_pred             hhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                                                         .....+-++..|+.+|.|++|.++..|+..++...
T Consensus        76 -----------------------------------~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~  110 (145)
T d2mysc_          76 -----------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATL  110 (145)
T ss_pred             -----------------------------------ccchHHHHHHHHHHhhcCCCCEEcHHHHHHHHHHh
Confidence                                               01122347889999999999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.10  E-value=0.0054  Score=55.04  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      +.+||+|+|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999999985

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.025  Score=53.73  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=40.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC---CcccceEEEEEEcC-CCceEEEEEecCCh
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP---TTGEQYAVNVVDQP-GGNKKTLILQEIPE  482 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~---t~~~~~~~~~vd~~-g~~~~~~i~d~~g~  482 (670)
                      ..+..-|+|+|+.++|||+|+|.|++..+.-...+   ..+.++.......+ +....++++|+-|-
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL   95 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence            34567889999999999999999998764322111   12223444333333 34556777888884

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0054  Score=54.43  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      +||+|+|+||+||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0034  Score=57.25  Aligned_cols=22  Identities=41%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      =|+|+|++|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0062  Score=54.11  Aligned_cols=24  Identities=25%  Similarity=0.536  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .++|+|+|+|||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999999753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.01  E-value=0.0045  Score=55.54  Aligned_cols=25  Identities=12%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+++|+|+|+||+||||+++.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4688999999999999999998754

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0075  Score=52.71  Aligned_cols=136  Identities=17%  Similarity=0.219  Sum_probs=84.5

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      ..++-.+.|.++|...|.+++|.++.+|+...-....     ...++.+.+.+...     .+..++.+.|+.....+. 
T Consensus        10 ft~eei~~l~~~F~~~D~d~~G~I~~~E~~~~~~~~~-----~~~~~~l~~~~d~~-----~~g~i~~~EFl~~~~~~~-   78 (165)
T d1auib_          10 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQ-----NPLVQRVIDIFDTD-----GNGEVDFKEFIEGVSQFS-   78 (165)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCSEECHHHHTTSHHHHT-----CTTHHHHHHHHCTT-----CSSSEEHHHHHHHHGGGC-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHhhhccC-----CHHHHHHHHHHccc-----cchhhhhhhhhhhccccc-
Confidence            5667778999999999999999999999854322211     12234444444322     344588889887643110 


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p  349 (670)
                                                              ......+.++..|+.+|.|++|.++.+|+.+++....+..
T Consensus        79 ----------------------------------------~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~~~~~  118 (165)
T d1auib_          79 ----------------------------------------VKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNN  118 (165)
T ss_dssp             ----------------------------------------TTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTTS
T ss_pred             ----------------------------------------cchhhHHHHHHHHHHhcccccccccHHHHHHHHHHhcccc
Confidence                                                    0112356688899999999999999999988886543322


Q ss_pred             CCCC-------CCCCCccccCCCccchhhhHhhh
Q 005908          350 WDEA-------PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       350 ~~~~-------~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ....       ........+..|.|++..|+...
T Consensus       119 ~~~~~~~~~~~~~~~~~D~~~dG~Is~~EF~~i~  152 (165)
T d1auib_         119 LKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV  152 (165)
T ss_dssp             SCHHHHHHHHHHHHHHHCTTSSSSEEHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence            2111       01111234556667776665543

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=94.96  E-value=0.0082  Score=53.45  Aligned_cols=138  Identities=17%  Similarity=0.194  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCcc
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  274 (670)
                      ...|+++|...|.+++|.++.+++...-... +..+....+..+...+...     .+..++++.|+.+........+.+
T Consensus         9 i~~l~~~F~~~D~d~dG~Is~~e~~~~l~~l-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~~~~~e   82 (182)
T d1s6ia_           9 IGGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADID-----KSGTIDYGEFIAATVHLNKLEREE   82 (182)
T ss_dssp             TCSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCTT-----CSSEECHHHHHHHHTTSSSSCCCC
T ss_pred             HHHHHHHHHHHcCCCcCCCCHHHHHHHHHHc-CCccccccchhhhhhhhcc-----ccccchHHHHHHHHHhhcccccHH
Confidence            3458889999999999999999987655443 5666776766665555333     234578899998888777777778


Q ss_pred             chhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC
Q 005908          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (670)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~  346 (670)
                      ..+.+.+.+..+.+..+...-+-..+.-     ..++.   ..+..+|+.+|.|+||.++-.|...++...|
T Consensus        83 ~l~~aF~~~D~d~~G~i~~~el~~~l~~-----~gl~~---~ev~~~f~~~D~d~DG~Is~~EF~~~m~~~~  146 (182)
T d1s6ia_          83 NLVSAFSYFDKDGSGYITLDEIQQACKD-----FGLDD---IHIDDMIKEIDQDNDGQIDYGEFAAMMRKRK  146 (182)
T ss_dssp             STHHHHHHTTTTCSSEEEHHHHHHTTTT-----TTCCT---THHHHHHHHHCSSSSSEEETTHHHHTTSCCC
T ss_pred             HHHHHHHHHhhcCCCccchhhhhhhhhh-----cCccH---HHHHHHHHHhhcCCCCeEeHHHHHHHHHhCc
Confidence            8888888877776544443111001110     01222   3467899999999999999999999988654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.93  E-value=0.0059  Score=53.37  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q 005908           15 VVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~   35 (670)
                      |+|.|+|||||||++++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.92  E-value=0.0085  Score=52.67  Aligned_cols=27  Identities=19%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .+++.+-|.|+|.|||||||+.+.|..
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            356678899999999999999988863

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.91  E-value=0.0037  Score=56.09  Aligned_cols=21  Identities=43%  Similarity=0.692  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q 005908           15 VVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~   35 (670)
                      |+|+|++|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999765

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.86  E-value=0.0064  Score=53.91  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      +||+|+|+||+||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.007  Score=52.26  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.67  E-value=0.0087  Score=53.75  Aligned_cols=26  Identities=12%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .++..|+|+|+||+||||+.++|...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.67  E-value=0.0087  Score=53.67  Aligned_cols=26  Identities=15%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ...++|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.64  E-value=0.0076  Score=51.57  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 005908          426 CLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~  446 (670)
                      |+|.|.||||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999999754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.61  E-value=0.0077  Score=52.58  Aligned_cols=20  Identities=20%  Similarity=0.529  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 005908          426 CLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~  445 (670)
                      |.|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999975

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.60  E-value=0.0081  Score=53.31  Aligned_cols=23  Identities=39%  Similarity=0.668  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ++|+|+|+||+||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=94.59  E-value=0.037  Score=48.94  Aligned_cols=125  Identities=20%  Similarity=0.235  Sum_probs=80.3

Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccch
Q 005908          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (670)
Q Consensus       197 ~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  276 (670)
                      .|++.|...|.+++|.++..|+...-+. .+..++..++..+.+.+...     .+..++.+.|+..+..          
T Consensus        19 ~l~~~F~~~D~d~dG~Is~~El~~~l~~-l~~~~s~~~~~~l~~~~d~d-----~~~~i~~~ef~~~~~~----------   82 (182)
T d1y1xa_          19 ELMEWFRAVDTDGSGAISVPELNAALSS-AGVPFSLATTEKLLHMYDKN-----HSGEITFDEFKDLHHF----------   82 (182)
T ss_dssp             CHHHHHHHHCTTCSSSBCHHHHHHHHCB-TTBCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHH----------
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHHH-hcccCchhhhhhhhcccccc-----cccccccccccccccc----------
Confidence            4778899999999999999998876433 56788888888777765433     2445777777665431          


Q ss_pred             hHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC-CCC-CCCCCC
Q 005908          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PES-PWDEAP  354 (670)
Q Consensus       277 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~-~~~-p~~~~~  354 (670)
                                                            ...+...|+.+|.+++|.++.+|+.+++... ... +.....
T Consensus        83 --------------------------------------~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~ls~~e~~~  124 (182)
T d1y1xa_          83 --------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQA  124 (182)
T ss_dssp             --------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHH
T ss_pred             --------------------------------------ccccccchhccccccchhhhhHHHHHHHHHhCCchhHHHHHH
Confidence                                                  1234567788888888888888887777653 111 111111


Q ss_pred             CCCCccccCCCccchhhhHhh
Q 005908          355 YKDAAETTALGNLTLKGFVSK  375 (670)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~l~~  375 (670)
                      .......+..|.|++..|+..
T Consensus       125 i~~~~d~~~dg~I~~~eF~~~  145 (182)
T d1y1xa_         125 LMRKFDRQRRGSLGFDDYVEL  145 (182)
T ss_dssp             HHHHHCTTCSSSBCHHHHHHH
T ss_pred             HHhhcccCCCCCcCHHHHHHH
Confidence            112233455666766666554

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.0017  Score=55.71  Aligned_cols=136  Identities=17%  Similarity=0.188  Sum_probs=85.1

Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccch
Q 005908          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (670)
Q Consensus       197 ~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  276 (670)
                      +++.+|...|.+++|.++.+|+...-+. ++..++..++..+.....    ..-.+..++++.|..++.........   
T Consensus         3 ~~k~~F~~~D~d~~G~I~~~el~~~l~~-lg~~~s~~ei~~l~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~---   74 (146)
T d1m45a_           3 ANKDIFTLFDKKGQGAIAKDSLGDYLRA-IGYNPTNQLVQDIINADS----SLRDASSLTLDQITGLIEVNEKELDA---   74 (146)
T ss_dssp             CCTTCHHHHCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHC------CC--CCEEEHHHHHHHHHHTHHHHHG---
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHHH-cCCchhHHHHhhhhcccc----ccccccccccchhhhhhhhhcccccc---
Confidence            4567899999999999999999877654 477788888777654222    12234458888888875432211000   


Q ss_pred             hHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCC---
Q 005908          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA---  353 (670)
Q Consensus       277 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~---  353 (670)
                               .         .               ....+-++..|+.||.+++|.|+.+|+..++...- .|....   
T Consensus        75 ---------~---------~---------------~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~g-~~l~~~ei~  120 (146)
T d1m45a_          75 ---------T---------T---------------KAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLG-EKLTDAEVD  120 (146)
T ss_dssp             ---------G---------G---------------CCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHST-TCCCHHHHH
T ss_pred             ---------c---------c---------------cchHHHHHHHHHhhccccccccchhhhhhhhcccC-CcchHHHHH
Confidence                     0         0               00113478889999999999999999999988642 222211   


Q ss_pred             CCCCCccccCCCccchhhhHh
Q 005908          354 PYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      ..-.....+..|.|++..|+.
T Consensus       121 ~l~~~~D~d~dG~I~y~eF~~  141 (146)
T d1m45a_         121 ELLKGVEVDSNGEIDYKKFIE  141 (146)
T ss_dssp             HHHTTCCCCTTSEEEHHHHHH
T ss_pred             HHHHHhCCCCCCcEEHHHHHH
Confidence            111223345667777766653

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=94.59  E-value=0.017  Score=49.50  Aligned_cols=107  Identities=18%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHhC--CCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          192 PRCVRALKRIFIICD--HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d--~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      ++..+.++.+|...|  .+++|.++..++...-+ .+|..++..++..+..    .  .......++++.|+.++..+..
T Consensus         3 ~eqi~~l~~~F~~fD~~~~~dG~I~~~el~~~l~-~lG~~~t~~e~~~~~~----~--~~~~~~~i~~~eFl~~~~~~~~   75 (152)
T d1wdcc_           3 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCR-CLGINPRNEDVFAVGG----T--HKMGEKSLPFEEFLPAYEGLMD   75 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHH-HTTCCCCHHHHHHTTC----C--SSTTSCEECHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHH-HhccCccHhhhhhhhh----h--hccccccccccccccccccccc
Confidence            445566888898887  47889999999876643 4566677777665421    1  1223445899999987553321


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                      ..+                                        ...+-++..|+.||.|++|.++..|+..++...
T Consensus        76 ~~~----------------------------------------~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~~  111 (152)
T d1wdcc_          76 CEQ----------------------------------------GTFADYMEAFKTFDREGQGFISGAELRHVLTAL  111 (152)
T ss_dssp             SCC----------------------------------------CCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHS
T ss_pred             cch----------------------------------------hHHHhhhhhhhccccccCccchHHHHHHHHHHc
Confidence            100                                        112457889999999999999999999988753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.54  E-value=0.0086  Score=53.21  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ++|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999864

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.051  Score=45.90  Aligned_cols=109  Identities=20%  Similarity=0.355  Sum_probs=74.9

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (670)
                      ++++....++.+|...|.+++|.++..++...-. ..+..+....+..+.......     ....++++.|........ 
T Consensus         4 ls~~~i~~l~~~F~~~D~d~~G~i~~~e~~~~l~-~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-   76 (146)
T d1lkja_           4 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMR-SLGLSPSEAEVNDLMNEIDVD-----GNHQIEFSEFLALMSRQL-   76 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHH-HHTCCCCHHHHHHHHHHHCSS-----SCCEEEHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcEeHHHHHHHHH-hcCCCCCHHHHHHHHHHhccC-----CcccccHHHHHHHHHHhh-
Confidence            4566777899999999999999999999976543 356666666655544332222     133356667666543211 


Q ss_pred             cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                        ..                                      ....+-++..|+.||.|++|.|+.+|+..++...
T Consensus        77 --~~--------------------------------------~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~  112 (146)
T d1lkja_          77 --KS--------------------------------------NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI  112 (146)
T ss_dssp             --CC--------------------------------------CCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHHHH
T ss_pred             --cc--------------------------------------ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence              00                                      1123567889999999999999999999888754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.43  E-value=0.008  Score=52.52  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .+|+++|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.011  Score=52.90  Aligned_cols=23  Identities=30%  Similarity=0.435  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ++.|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999975

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.01  Score=55.25  Aligned_cols=24  Identities=21%  Similarity=0.091  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      =+|+|+|++|+|||||++.+.+-.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            479999999999999999999854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.32  E-value=0.013  Score=52.01  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      =|+|+|++|||||||++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.011  Score=52.21  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .|.|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.01  Score=52.49  Aligned_cols=23  Identities=30%  Similarity=0.536  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      +||+|+|+||+||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.012  Score=52.69  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ++.|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.20  E-value=0.011  Score=51.56  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      -|+|.|+|||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999853

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=94.15  E-value=0.015  Score=35.31  Aligned_cols=28  Identities=29%  Similarity=0.546  Sum_probs=25.0

Q ss_pred             HHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          317 FLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       317 ~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                      -|+.-|+.||+|++|.++..|+..++..
T Consensus         4 el~eAF~~FDkDg~G~Is~~EL~~vm~~   31 (33)
T d2hf5a1           4 EIREAFRVFDKDGNGYISAAELRHVMTN   31 (33)
T ss_dssp             HHHHHHHHHSSSCCSCBCHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            4788999999999999999999888753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.013  Score=51.86  Aligned_cols=24  Identities=38%  Similarity=0.613  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+||+|+|+||+||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.96  E-value=0.019  Score=51.23  Aligned_cols=26  Identities=15%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ...++-|+|.|.+|+|||||.++|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999964

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.011  Score=52.75  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhc
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ....|.++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356788999999999999999964

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.013  Score=54.40  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .=+|+|+|++|+|||||++.+.+-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            447999999999999999999774

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.93  E-value=0.012  Score=51.04  Aligned_cols=21  Identities=43%  Similarity=0.608  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      +|+|+|.|||||||+...|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999854

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=93.92  E-value=0.076  Score=43.70  Aligned_cols=102  Identities=19%  Similarity=0.233  Sum_probs=71.9

Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchh
Q 005908          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (670)
Q Consensus       198 l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (670)
                      .+.+|...|.+++|.++..|+...-.. .+..+...+++.+...+...     .+..++.+.|+.+...           
T Consensus         2 ae~~F~~~D~d~dG~is~~E~~~~l~~-~~~~~~~~~~~~~~~~~D~~-----~~g~i~~~Ef~~~~~~-----------   64 (134)
T d1jfja_           2 AEALFKEIDVNGDGAVSYEEVKAFVSK-KRAIKNEQLLQLIFKSIDAD-----GNGEIDQNEFAKFYGS-----------   64 (134)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHT-TCCSSHHHHHHHHHHHHCSS-----CCSEEEHHHHHHHTTC-----------
T ss_pred             HHHHHHHHcCCCcCCCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhhhc-----cccccccccccccccc-----------
Confidence            367899999999999999999876644 45566666666665554222     2445888888775210           


Q ss_pred             HHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                                              ..+    .-.......++.+|+.+|.|++|.++.+|+..++..
T Consensus        65 ------------------------~~~----~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~~~~  103 (134)
T d1jfja_          65 ------------------------IQG----QDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKK  103 (134)
T ss_dssp             ------------------------SSC----CSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTT
T ss_pred             ------------------------ccc----cccccccccccccccccccccCCcccHHHHHHHHHh
Confidence                                    000    012345667889999999999999999999888764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.92  E-value=0.014  Score=51.61  Aligned_cols=21  Identities=33%  Similarity=0.378  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      -|+|.|.+||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.91  E-value=0.014  Score=54.37  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            479999999999999999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.90  E-value=0.014  Score=51.72  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=18.2

Q ss_pred             eEEE-EEcCCCCCHHHHHHHHHc
Q 005908           13 VRVV-VVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        13 ~kI~-ivG~~~vGKSSLi~~l~~   34 (670)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            4664 579999999999999953

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.87  E-value=0.016  Score=53.05  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=22.7

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      |+.++|+|-|+|||||||+...|...
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            46688999999999999999999753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.85  E-value=0.013  Score=54.89  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      =+++|+|++|+|||||++.+.+-.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            379999999999999999998753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.82  E-value=0.011  Score=51.52  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ++|+++|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.02  Score=50.97  Aligned_cols=27  Identities=30%  Similarity=0.548  Sum_probs=22.3

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      +..-++++||+||||||+++..|...-
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            345589999999999999999887543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.013  Score=51.48  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~  445 (670)
                      .|.|.|+||+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999984

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=0.11  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .++|.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.016  Score=54.36  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            479999999999999999999854

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.68  E-value=0.015  Score=52.42  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58999999999999999999854

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=93.67  E-value=0.062  Score=40.47  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=26.3

Q ss_pred             ccccHHHHHHHHHHHHHhCCCC-CCCCChHHHHH
Q 005908          188 QTLKPRCVRALKRIFIICDHDM-DGALNDAELNE  220 (670)
Q Consensus       188 ~~~~~~~~~~l~ri~~~~d~~~-~~~l~~~el~~  220 (670)
                      ..+.++....++.+|...|.++ +|.++..++..
T Consensus         7 ~~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~   40 (82)
T d1wrka1           7 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGK   40 (82)
T ss_dssp             HHCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHH
Confidence            3466777888899999999884 78999888754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.67  E-value=0.017  Score=50.49  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -|+|.|+|||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.65  E-value=0.016  Score=53.39  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++|+|++|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            58999999999999999888753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.013  Score=51.90  Aligned_cols=21  Identities=19%  Similarity=0.581  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 005908          426 CLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~  446 (670)
                      |+|+|++||||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.63  E-value=0.016  Score=52.32  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .++|+|+.|+|||||++.+++-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5789999999999999999774

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.019  Score=54.08  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      -++++||+||||||+++..|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999988753

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.61  E-value=0.052  Score=45.85  Aligned_cols=103  Identities=18%  Similarity=0.358  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCC
Q 005908          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (670)
Q Consensus       193 ~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  272 (670)
                      +....++.+|...|.+++|.++..++...-+..-..+.....+.   .... .     .+..++++.|+..+.-...   
T Consensus         4 ~qi~el~e~F~~~D~~~~G~I~~~e~~~~l~~lg~~~~~~~~~~---~~~~-~-----~~g~i~~~eF~~~~~~~~~---   71 (145)
T d2mysb_           4 TEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELD---AMIK-E-----ASGPINFTVFLTMFGEKLK---   71 (145)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCcchHHHHH---HHHH-h-----ccCceeechhhhhhhhccc---
Confidence            44567888999999999999999998776544322223332222   2221 1     1234667777765321000   


Q ss_pred             ccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                                                            .....+.++..|+.||.+++|.++..++..++...
T Consensus        72 --------------------------------------~~~~~~~l~~aF~~fD~~~~g~I~~~el~~~l~~~  106 (145)
T d2mysb_          72 --------------------------------------GADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG  106 (145)
T ss_pred             --------------------------------------ccchHHHHHHHHHhhhhcccchhhHHHHHHHHHHc
Confidence                                                  01123468889999999999999999998888653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.60  E-value=0.015  Score=51.85  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 005908          426 CLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~  446 (670)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999865

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.016  Score=49.79  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.017  Score=51.61  Aligned_cols=21  Identities=43%  Similarity=0.637  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q 005908           15 VVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~   35 (670)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999998653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.017  Score=53.22  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++++|++|+|||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999998854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.54  E-value=0.017  Score=54.18  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .=+++|+|++|+|||||++-+.+-
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhcc
Confidence            347999999999999999999764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.53  E-value=0.018  Score=53.63  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      +.=+++|+|+.|+|||||++-+.+-
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999999764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.026  Score=49.01  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=20.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ..-=|+|+|.|||||||+.+.|...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3444778999999999999999753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.48  E-value=0.016  Score=51.33  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      -|+|+|++|||||||+++|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.46  E-value=0.021  Score=50.94  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=22.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ...++-|+|-|.+|+|||||.++|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34578899999999999999999974

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.023  Score=49.84  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ..+.-|+++|.|||||||+..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556789999999999999999964

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.064  Score=50.19  Aligned_cols=23  Identities=48%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -.|++.|+||+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45999999999999999999753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.018  Score=54.83  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      =.++|+|++|+|||||++.+.|-.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            369999999999999999999753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.02  Score=53.64  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .=+++|+|+.|+|||||++-+.+-
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcc
Confidence            347899999999999999998764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.02  Score=52.62  Aligned_cols=23  Identities=43%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      =-++|+|+.|+|||||++.+.+-
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            35899999999999999999775

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.27  E-value=0.021  Score=54.48  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      .=.|+|+|+.|+|||||++.+.+-.
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3469999999999999999998743

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.26  E-value=0.019  Score=50.58  Aligned_cols=21  Identities=10%  Similarity=0.175  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~  445 (670)
                      -|+|.|.+||||||++++|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999998863

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.012  Score=52.47  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      +.+.|.++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999999999964

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.20  E-value=0.026  Score=49.29  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhc
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ...+-|.++|.|||||||+.++|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999988874

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.18  E-value=0.021  Score=52.80  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++|+|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            58999999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.16  E-value=0.021  Score=52.71  Aligned_cols=23  Identities=39%  Similarity=0.670  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++++|++|+|||||++.+.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999999854

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.11  E-value=0.021  Score=52.48  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -++|+|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            5899999999999999988663

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.06  E-value=0.023  Score=49.59  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q 005908           15 VVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~   34 (670)
                      |+++|.+||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999954

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=93.04  E-value=0.37  Score=42.04  Aligned_cols=155  Identities=12%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             cHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhh----hcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHH
Q 005908          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVK----CFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (670)
Q Consensus       191 ~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~----~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~  266 (670)
                      .|+..+.++.+|..+|.+++|.++.+|+......    ..+......+...+..........-.....++.+.|+..+..
T Consensus         9 ~~~~i~r~k~~F~~~D~d~dG~I~~~E~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~   88 (189)
T d1qv0a_           9 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQ   88 (189)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhccccCCCceehHHHHHHHHH
Confidence            4677778899999999999999999998765433    223332322222221111111111222444666666665443


Q ss_pred             HHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC-
Q 005908          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-  345 (670)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~-  345 (670)
                      .....       ..+...-                        ......+.+..+|+.+|.|++|.|+..|+..+.... 
T Consensus        89 ~~~~~-------~~~~~~~------------------------~~~~~~~~~~~~F~~~D~d~~G~is~~E~~~~l~~~g  137 (189)
T d1qv0a_          89 LATSE-------LKKWARN------------------------EPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG  137 (189)
T ss_dssp             HHHHH-------HHHHHTT------------------------CCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHHS
T ss_pred             HHHHh-------hhccccc------------------------cHHHHHHHHHHHHHHHccCCCCcccchhhHHHHHhcC
Confidence            22111       0000000                        011233456678888888888888888877666643 


Q ss_pred             CCCCCCC-CCCCCCccccCCCccchhhhHhhh
Q 005908          346 PESPWDE-APYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       346 ~~~p~~~-~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ...+... .........+..|.|++..|+..+
T Consensus       138 ~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~  169 (189)
T d1qv0a_         138 ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQH  169 (189)
T ss_dssp             SCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            1111100 001112334566777776666554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.03  E-value=0.035  Score=49.60  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .--|+|+|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999999764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.99  E-value=0.025  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999998853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.98  E-value=0.023  Score=49.55  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 005908          426 CLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~  446 (670)
                      |+|.|+|||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.023  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      -|+|+|++|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.93  E-value=0.025  Score=52.19  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            58999999999999999998753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.022  Score=52.63  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++|+|++|+|||||++.+.|-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            58999999999999999999853

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.89  E-value=0.017  Score=54.11  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      =+++|+|++|+|||||++.+.+-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            489999999999999999888743

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.84  E-value=0.17  Score=46.75  Aligned_cols=23  Identities=35%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ..+++.|++|+||||++..+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999998764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.84  E-value=0.019  Score=52.76  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++|+|++|+|||||++.+.|-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            58999999999999999999854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.79  E-value=0.025  Score=50.50  Aligned_cols=21  Identities=43%  Similarity=0.759  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 005908          426 CLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~  446 (670)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.034  Score=52.37  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      +..-++++||+||||||+++..|...-
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            344589999999999999999987543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.73  E-value=0.026  Score=52.12  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999999854

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.69  E-value=0.027  Score=50.41  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      --|+|+|+|||||||+..+|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.64  E-value=0.033  Score=52.47  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      --|++.|+||+|||||+..+.+.-
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999997643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.63  E-value=0.035  Score=48.23  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      =|+|.|.+|+||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3667799999999999999764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.033  Score=49.81  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ....|+|+|+|||||||+...|...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.56  E-value=0.025  Score=48.96  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~  445 (670)
                      +|+++|.|||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.52  E-value=0.027  Score=49.75  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=17.6

Q ss_pred             EEE-EEcCCCCcHHHHHHHHhc
Q 005908          425 RCL-LFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       425 kI~-ivG~~~vGKSSLin~l~~  445 (670)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 579999999999999863

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.47  E-value=0.029  Score=50.16  Aligned_cols=28  Identities=18%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            7 SSSRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ...++++-|+|-|..||||||+++.|..
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4566778999999999999999999865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.023  Score=52.48  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      -++|+|+.|+|||||++.+.|-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999983

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.43  E-value=0.028  Score=52.08  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -.+++.|+||+||||+++.+.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.42  E-value=0.03  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++++|+.|+|||||++.+.|-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999999864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.04  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      --++|+|.||+||||+.++|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34667899999999999999753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.35  E-value=0.022  Score=52.21  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            58999999999999999998853

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.32  E-value=0.033  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.025  Score=52.18  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999873

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.27  E-value=0.032  Score=51.64  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++++|+.|+|||||++.+.|-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.038  Score=50.09  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ++-|+|-|.+|+|||||.++|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            68899999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.25  E-value=0.021  Score=53.54  Aligned_cols=24  Identities=42%  Similarity=0.553  Sum_probs=20.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      +.=+|+|+|++|+|||||++-+.+
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHh
Confidence            344899999999999999987765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.031  Score=51.66  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      =-++|+|++|+|||||++.+.+-
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            35799999999999999999774

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.18  E-value=0.038  Score=55.10  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=19.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHc
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      +..-++++||+||||||+++..|..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHH
Confidence            3445689999999999999876654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.17  E-value=0.033  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -++|+|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999875

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=92.16  E-value=0.0071  Score=44.83  Aligned_cols=67  Identities=19%  Similarity=0.416  Sum_probs=45.9

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC--CCCCCCCCCccccCCCccchhhhHhh
Q 005908          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSK  375 (670)
Q Consensus       309 ~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~l~~  375 (670)
                      +||++-..-++..|+.||.|++|.|+..|+..++...-..|  ......-.....+..|.|++..|+..
T Consensus         1 qLs~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~   69 (73)
T d2pq3a1           1 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM   69 (73)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            57888889999999999999999999999988887642211  00001111233456677777777654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.15  E-value=0.032  Score=48.51  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 005908          426 CLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~  446 (670)
                      |+|.|.+|+||||+.++|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.04  Score=49.00  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      -++++||+||||||+++..|..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            4789999999999999998875

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.12  Score=44.64  Aligned_cols=85  Identities=19%  Similarity=0.201  Sum_probs=56.6

Q ss_pred             CCCCCCChHHHHHHhhhhc----CCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhc
Q 005908          208 DMDGALNDAELNEFQVKCF----NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKF  283 (670)
Q Consensus       208 ~~~~~l~~~el~~~q~~~~----~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~  283 (670)
                      +.++.++.+|+...-..+.    ..++..+.+..+...+.   .+  .+.-+..+.|..++..                 
T Consensus        11 ~~dG~I~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~D---~~--~~G~i~~~EF~~l~~~-----------------   68 (165)
T d1k94a_          11 GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLD---RD--HTGKMGFNAFKELWAA-----------------   68 (165)
T ss_dssp             GGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHC---TT--CSSCBCHHHHHHHHHH-----------------
T ss_pred             CCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHhC---CC--CCCcCcHHHHHHHhhc-----------------
Confidence            4688888888876654432    22334444444444332   11  2444889999887431                 


Q ss_pred             cCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          284 GYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       284 ~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                                                     .+.++.+|+.||.|++|.++.+|+..++...
T Consensus        69 -------------------------------~~~~~~~F~~fD~d~sG~I~~~El~~~l~~~   99 (165)
T d1k94a_          69 -------------------------------LNAWKENFMTVDQDGSGTVEHHELRQAIGLM   99 (165)
T ss_dssp             -------------------------------HHHHHHHHHHHCTTCCSBCCHHHHHHHHHHT
T ss_pred             -------------------------------cchhHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence                                           2346789999999999999999999888765

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.96  E-value=0.036  Score=51.91  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      .++|+|++|+|||||++.+.|-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999999753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.92  E-value=0.035  Score=51.34  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .+++.|+||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.046  Score=49.56  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ++-|+|.|.+|+|||||.++|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=91.90  E-value=0.038  Score=51.14  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.79  E-value=0.024  Score=52.45  Aligned_cols=24  Identities=25%  Similarity=0.402  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            368999999999999999999854

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.72  E-value=0.012  Score=44.62  Aligned_cols=65  Identities=15%  Similarity=0.321  Sum_probs=44.4

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCC---CCCCCccccCCCccchhhhHh
Q 005908          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA---PYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       309 ~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      .||..-.+-|+..|+.||.|++|.++..|+..++...- .+....   ..-.....+..|.|++..|+.
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~~s~~e~~~~~~~~D~d~~g~I~~~eF~~   74 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG-QNPTKEELDAIIEEVDEDGSGTIDFEEFLV   74 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT-CCCCHHHHHHHHHHHCTTCCSSEEHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            57888888899999999999999999999999987642 222211   111123335556666665554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.71  E-value=0.065  Score=50.26  Aligned_cols=25  Identities=28%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+--|++.|+||+|||||+.++.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3344889999999999999999864

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=91.71  E-value=0.014  Score=44.14  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             chhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC-CCCCCCCCCccccCCCccchhhhHhhh
Q 005908          311 ASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       311 s~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      |++-.+-++.+|+.||.|++|.++..|+..++......+ .....+-.....+..|.|++..|+...
T Consensus         1 T~ee~~e~~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~ei~~~~~~~D~d~~G~I~~~EF~~~~   67 (81)
T d2opoa1           1 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFA   67 (81)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            456677789999999999999999999998887753211 111111223445677888888777643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.67  E-value=0.041  Score=51.48  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 005908          425 RCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      -++++|+.|+|||||++.+.|-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            47999999999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.58  E-value=0.068  Score=49.67  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      .-.+++.|+||+||||++..+.+.-
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3469999999999999999998753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.56  E-value=0.6  Score=43.36  Aligned_cols=87  Identities=8%  Similarity=0.055  Sum_probs=50.7

Q ss_pred             eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcE-EEEEeCCCCCCCcc
Q 005908          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIASKDDLKPYTM  550 (670)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~NK~Dl~~~~~  550 (670)
                      ..+.++|+++.-..... ........||.++++.+.. ..++.........+.......  +.++ -+|.|+.+....  
T Consensus       116 ~D~viiD~p~~~~~~~~-~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~--~~~~~~vv~N~~~~~~~--  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGF-AMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSG--GVRLGGIICNSRKVANE--  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTT-THHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTB--BCEEEEEEEECCSSSCC--
T ss_pred             CCEEEeccCCccchhHH-HHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhcccc--ceeccceEEeeecCCCc--
Confidence            34566777653211111 0223335588888887763 456666666666666554332  3333 378899886552  


Q ss_pred             cHHHHHHHHHHhCCC
Q 005908          551 AVQDSARVTQELGIE  565 (670)
Q Consensus       551 ~~~~~~~~~~~~~~~  565 (670)
                       .+..+++++.++.+
T Consensus       190 -~~~~~~~~~~~~~~  203 (269)
T d1cp2a_         190 -YELLDAFAKELGSQ  203 (269)
T ss_dssp             -HHHHHHHHHHHTCC
T ss_pred             -cchhhhhHhhcCCe
Confidence             45677788888875

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.54  E-value=0.18  Score=41.91  Aligned_cols=98  Identities=18%  Similarity=0.288  Sum_probs=68.3

Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchh
Q 005908          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (670)
Q Consensus       198 l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (670)
                      .+.+|...|.+++|.++..++...-+ .+|..++..++..+.   ..      .+..++++.|+.++..           
T Consensus         7 fke~F~~~D~d~dG~I~~~el~~~l~-~lg~~~t~~ei~~~~---~~------~~~~i~~~eF~~~~~~-----------   65 (140)
T d1ggwa_           7 YKQAFSLFDRHGTGRIPKTSIGDLLR-ACGQNPTLAEITEIE---ST------LPAEVDMEQFLQVLNR-----------   65 (140)
T ss_dssp             THHHHHHTCSSSSSEECHHHHHHHHH-HTSCCCCHHHHHHHH---TT------SCSSEEHHHHHHHHCT-----------
T ss_pred             HHHHHHHHCCCCCCeECHHHHHHHHH-HHHhhhHHHhhhhhh---cc------ccccccchhhhhhhhh-----------
Confidence            46789999999999999999876643 467778877765542   11      2456888888876320           


Q ss_pred             HHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                          .....         .|               ...+-++..|+.+|.|++|.++.+|+..++..
T Consensus        66 ----~~~~~---------~~---------------~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~  104 (140)
T d1ggwa_          66 ----PNGFD---------MP---------------GDPEEFVKGFQVFDKDATGMIGVGELRYVLTS  104 (140)
T ss_dssp             ----TSSSS---------SS---------------CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHH
T ss_pred             ----hhhcc---------hh---------------hHHHHHHHHHHHHhccCCCcchHHHHHHHHHH
Confidence                00000         00               11234788999999999999999999888864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.51  E-value=0.044  Score=47.72  Aligned_cols=20  Identities=10%  Similarity=0.326  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 005908          426 CLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~  445 (670)
                      |+++|.+||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999964

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.42  E-value=0.049  Score=49.60  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .++|+|-|+|||||||....|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999853

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.40  E-value=0.057  Score=50.26  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      +...|++.|+||+|||+|++.+.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3456999999999999999999753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.37  E-value=0.04  Score=49.20  Aligned_cols=23  Identities=13%  Similarity=0.281  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .-|+|+|+||+||||+..+|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.36  E-value=0.046  Score=51.17  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            36899999999999999999764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.35  E-value=0.059  Score=47.78  Aligned_cols=25  Identities=16%  Similarity=0.104  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      +++-|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5788999999999999999988653

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.29  E-value=0.51  Score=40.76  Aligned_cols=134  Identities=10%  Similarity=0.088  Sum_probs=82.8

Q ss_pred             CCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCC
Q 005908          208 DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGD  287 (670)
Q Consensus       208 ~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~  287 (670)
                      +.+|.++.+++...-...+...-...-++.+.+.+...     .+..++.+.|+.....+......+....+.+.+..+.
T Consensus        26 ~~~G~is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~~-----~~g~I~~~EFl~~~~~~~~~~~~~~~~~~f~~~D~~~  100 (178)
T d1s6ca_          26 CPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTT-----QTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINK  100 (178)
T ss_dssp             CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTT-----CSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTC
T ss_pred             CcCCCccHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHHHhccchHHHHHHHHHhhccCC
Confidence            45678888887765555444433444446666655332     2334999999999999998888888888888888877


Q ss_pred             CcccCCCCC-C--CCC--CCCCCCceecchh-HHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC
Q 005908          288 DLELRDDFL-P--VPT--KLSPDQSVELASE-AVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (670)
Q Consensus       288 ~l~~~~~~~-p--~~~--~~~~~~~~~ls~~-~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~  346 (670)
                      +-.+...-+ .  ..+  .........++.. ..++...+|+.+|.|+||.++.+|.....+..|
T Consensus       101 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~~i~~~~  165 (178)
T d1s6ca_         101 DGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDD  165 (178)
T ss_dssp             SSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSCC
T ss_pred             CCeecHHHHHHHHHHHHhhcccccccCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHCH
Confidence            655543111 0  000  0011111122222 234566799999999999999999887666543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.27  E-value=0.047  Score=51.09  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -++|+|+.|+|||||++.+.+-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            4799999999999999999875

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.23  E-value=0.83  Score=39.79  Aligned_cols=142  Identities=14%  Similarity=0.103  Sum_probs=75.6

Q ss_pred             HHHHHHHHhCC-CCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccc
Q 005908          197 ALKRIFIICDH-DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (670)
Q Consensus       197 ~l~ri~~~~d~-~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (670)
                      .++.+++.... ..+|.++-.|+...- ..++.......++.+.+.+...     .++-+++..|+.....+......+.
T Consensus        22 ei~~~~~~F~~~~~~G~i~~~Ef~~~l-~~~~~~~~~~~~~~lf~~~D~d-----~dG~I~f~Ef~~~l~~~~~~~~~~~   95 (189)
T d1jbaa_          22 QLQEWYKKFLEECPSGTLFMHEFKRFF-KVPDNEEATQYVEAMFRAFDTN-----GDNTIDFLEYVAALNLVLRGTLEHK   95 (189)
T ss_dssp             HHHHHHHHHHSSSTTCCEEHHHHHHHH-HCCSSSTTHHHHHHHHHHHCCS-----SSSEECHHHHHHHHHHHSSCCCTHH
T ss_pred             HHHHHHHHhcccCCCCeeeHHHHHHHH-HHcCCCccHHHHHHHHHHhccC-----CCCeEeehhHHHHHHhhcccchHHH
Confidence            34444444332 235666666664442 2344445555555555444322     1223667777666666655555555


Q ss_pred             hhHHHhhccCCCCcccCCCCC----C--------CCCCCCC-CCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhh
Q 005908          276 TWAVLRKFGYGDDLELRDDFL----P--------VPTKLSP-DQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF  342 (670)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~----p--------~~~~~~~-~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f  342 (670)
                      +..+.+.+..+.+-.+...-+    .        ....... .....++  ..+....+|+.+|.|+||.|+.+|+.++.
T Consensus        96 ~~~~F~~~D~d~~g~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~if~~~D~d~dG~Is~~EF~~~~  173 (189)
T d1jbaa_          96 LKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLT--PEEVVDRIFLLVDENGDGQLSLNEFVEGA  173 (189)
T ss_dssp             HHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCC--HHHHHHHHHHHHCCSCCSCBCHHHHHHHH
T ss_pred             HHHHHhhhccCCCCcccHhHHHHHHHHHHHhhccccccchhhhhccccc--hHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            555666655554433332100    0        0000000 1111112  23567789999999999999999999888


Q ss_pred             ccCC
Q 005908          343 LTAP  346 (670)
Q Consensus       343 ~~~~  346 (670)
                      +..|
T Consensus       174 ~~~p  177 (189)
T d1jbaa_         174 RRDK  177 (189)
T ss_dssp             TTTT
T ss_pred             HhCH
Confidence            8655

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.18  E-value=0.046  Score=52.89  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .-.|+++|+||||||.|++++.+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            346899999999999999999764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.17  E-value=0.061  Score=49.62  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ....+++.|+||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3456889999999999999999864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.2  Score=46.10  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      -++|.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.15  E-value=0.083  Score=49.09  Aligned_cols=24  Identities=38%  Similarity=0.587  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .--|++.|+||+|||+|++++.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            456999999999999999999863

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=90.99  E-value=0.29  Score=35.49  Aligned_cols=70  Identities=21%  Similarity=0.312  Sum_probs=55.1

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~  265 (670)
                      +.++-...++.+|...|.+++|.++..++...-.. .+..++..++..+.+.+...     .+..++++.|+.++.
T Consensus         2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~s~~~~~~~~~~~D~d-----~~g~I~f~eF~~~m~   71 (73)
T d2pq3a1           2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GNGTIDFPEFLTMMA   71 (73)
T ss_dssp             CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----CSSEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC-----CCCeEeHHHHHHHHh
Confidence            45666778999999999999999999998876544 67888888888877766433     245599999988753

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.98  E-value=0.13  Score=44.96  Aligned_cols=147  Identities=13%  Similarity=0.080  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCc
Q 005908          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (670)
Q Consensus       194 ~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (670)
                      -.+.+.+.|.  +.+.+|.++..++...-...+...-....++.+.+.+...     .+.-++.+.|+.....+......
T Consensus        22 ei~~l~~~F~--~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~-----~~g~i~~~eFl~~~~~~~~~~~~   94 (181)
T d1bjfa_          22 EIQEWYKGFL--RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDAN-----GDGTIDFREFIIALSVTSRGKLE   94 (181)
T ss_dssp             HHHHHHHHHH--HHSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSS-----CSSEEEHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHH--hhCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCC-----CCCcEeHHHHHHHHHHHhhhchH
Confidence            3444544443  2356788888888776665555554445555665555322     12348899999998888877778


Q ss_pred             cchhHHHhhccCCCCcccCCCCC-C---CCCCCCCCC-ce-ecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908          274 ETTWAVLRKFGYGDDLELRDDFL-P---VPTKLSPDQ-SV-ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (670)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~-p---~~~~~~~~~-~~-~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~  347 (670)
                      +..+.+.+.+..+.+..+..+-+ .   ......... .. .......+.+..+|+.+|.|+||.++-+|..+.....|.
T Consensus        95 ~~~~~~f~~~D~d~dg~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~~p~  174 (181)
T d1bjfa_          95 QKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPS  174 (181)
T ss_dssp             HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHHHCTH
T ss_pred             HHHHHHHHHhccCCCCeecHHHHHHHHHHHhhhccccccCCcccccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHH
Confidence            88888899888887665554211 0   001111110 00 111224456778999999999999999999888876553

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.98  E-value=0.03  Score=51.74  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            368999999999999999998743

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.86  E-value=0.075  Score=47.98  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ..+.+-|.|.|.||+|||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45667899999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.82  E-value=0.06  Score=47.93  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=23.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ..+++-|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            356688999999999999999998753

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.65  E-value=0.19  Score=35.88  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=19.8

Q ss_pred             HHHHHHHhCCCCCCCCChHHHHH
Q 005908          198 LKRIFIICDHDMDGALNDAELNE  220 (670)
Q Consensus       198 l~ri~~~~d~~~~~~l~~~el~~  220 (670)
                      .+++|...|.+++|.++..|+..
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~   25 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFRE   25 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHH
Confidence            57889999999999999998754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.63  E-value=0.081  Score=51.26  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      -+|+|.|++|+|||||+|+|++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36999999999999999999964

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.016  Score=45.36  Aligned_cols=63  Identities=25%  Similarity=0.281  Sum_probs=42.9

Q ss_pred             cchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC-CCCCCCCccccCCCccchhhhH
Q 005908          310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD-EAPYKDAAETTALGNLTLKGFV  373 (670)
Q Consensus       310 ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~l  373 (670)
                      ||++-.+.++++|+.+|.|++|.++-+|+..+|.... .|-. -...-.....+.+|.++...|+
T Consensus         4 lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~~~-l~~~~l~~i~~~~D~d~dG~l~~~EF~   67 (95)
T d1c07a_           4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG-LPSTLLAHIWSLCDTKDCGKLSKDQFA   67 (95)
T ss_dssp             SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT-CCHHHHHHHHHHHCTTCSSSEETTTHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhcC-CCHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            6778888999999999999999999999999997642 2200 0000012334566677766554

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.034  Score=44.66  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=46.9

Q ss_pred             CCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC-CCCCCCccccCCCccchhhhH
Q 005908          304 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE-APYKDAAETTALGNLTLKGFV  373 (670)
Q Consensus       304 ~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~l  373 (670)
                      |+....+|++-.+.++.+|+.+|.|++|.++-+|+.++|...- .|-.. ...-.....+.+|.++...|+
T Consensus        10 ~~~~~~lt~ee~~~y~~lF~~~D~d~~G~Is~~e~~~~l~~s~-L~~~~L~~Iw~l~D~d~dG~l~~~EF~   79 (110)
T d1iq3a_          10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK-LSIPELSYIWELSDADCDGALTLPEFC   79 (110)
T ss_dssp             CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSS-CSSCCHHHHHHHHCSSSCSEEEHHHHH
T ss_pred             CCCCCccCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHhhc-cchHHHHHHHHHhccCCCCeECHHHHH
Confidence            3444578888899999999999999999999999999997642 33110 001112334566666666554

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.48  E-value=0.015  Score=41.92  Aligned_cols=58  Identities=26%  Similarity=0.389  Sum_probs=38.8

Q ss_pred             HHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC--CCCCCCccccCCCccchhhhHh
Q 005908          317 FLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE--APYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       317 ~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      -|++.|+.||.|++|.++..|+..++...-..+-..  ...-.....+..|.|++..|+.
T Consensus         4 el~~aF~~fD~d~~G~I~~~el~~~l~~lg~~~~~~e~~~l~~~~D~d~~g~I~~~eF~~   63 (65)
T d1fw4a_           4 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ   63 (65)
T ss_dssp             HHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCSSSEEHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHH
Confidence            378999999999999999999999888652222111  1111223446667777766654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.43  E-value=0.061  Score=49.35  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .++|.|+||+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.36  E-value=0.091  Score=46.49  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .++-|+|.|.+||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998854

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=90.33  E-value=0.06  Score=49.60  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ..+++.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999999864

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.25  E-value=0.56  Score=34.68  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=55.3

Q ss_pred             cccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHH
Q 005908          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       189 ~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~  265 (670)
                      .++++....++++|...|.+++|.++..|+...-. ..+..++..++..+...+...     .+..++++.|+.++.
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~-~~g~~~s~~e~~~~~~~~D~d-----~~g~I~~~eF~~~m~   77 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMR-MLGQNPTKEELDAIIEEVDED-----GSGTIDFEEFLVMMV   77 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH-HTTCCCCHHHHHHHHHHHCTT-----CCSSEEHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHH-HcCCCCCHHHHHHHHHHhCCC-----CCCeEeHHHHHHHHH
Confidence            35667777899999999999999999999977655 468889998887776655322     244599999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.23  E-value=0.064  Score=50.29  Aligned_cols=21  Identities=43%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999875

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.13  E-value=2.9  Score=35.78  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHH
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~  264 (670)
                      ...++.+++..|.++.+.++..++...-.. ++..+...++..+...+..     -.+..++.+.|+.+.
T Consensus        85 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-~~~~l~~e~~~~~~~~~d~-----~~dg~Is~~eF~~~~  148 (181)
T d1hqva_          85 ITDWQNVFRTYDRDNSGMIDKNELKQALSG-FGYRLSDQFHDILIRKFDR-----QGRGQIAFDDFIQGC  148 (181)
T ss_dssp             HHHHHHHHHHHCTTCCSSBCHHHHHHHHHH-HTBCCCHHHHHHHHHHHCS-----SCSSCBCHHHHHHHH
T ss_pred             ccccccccccccccccchhhhHHHHHHHHH-cCCcchhHHHHHHHHHhCC-----CCCCcCcHHHHHHHH
Confidence            345678888999999999999998776554 4667888887776665532     134568899987663

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.06  E-value=0.093  Score=48.98  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .-.++|.|+||+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=89.96  E-value=0.17  Score=48.98  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .+|+|.|.+|+|||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999863

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=89.95  E-value=0.4  Score=37.96  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=21.6

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHH
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEF  221 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~  221 (670)
                      ..++++|...|.+++|.++.+|+...
T Consensus        41 ~~~~~~F~~~D~d~~G~I~~~El~~~   66 (109)
T d1pvaa_          41 NDVKKVFKAIDADASGFIEEEELKFV   66 (109)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTG
T ss_pred             HHHHHHhhCccCCCcCeEcHHHHHHH
Confidence            35678999999999999999987543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.90  E-value=0.074  Score=52.90  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      -++++||+||||||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            4579999999999999976653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=89.86  E-value=0.073  Score=48.24  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -|+|.|+|||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5777899999999999999764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.81  E-value=0.082  Score=49.72  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q 005908           15 VVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        15 I~ivG~~~vGKSSLi~~l~~~   35 (670)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999999754

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.59  E-value=0.24  Score=42.84  Aligned_cols=130  Identities=21%  Similarity=0.260  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCC----CCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHc
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~----~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~  270 (670)
                      .+.++++|...+.+ ++.++..|+...-......    .....-.+.++..+...-.+  .+..++++.|+.++..    
T Consensus         3 ~~~~r~~F~~~d~~-dg~I~~~EL~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~d~d--~~g~i~~~ef~~~~~~----   75 (173)
T d1alva_           3 VRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD--TTGKLGFEEFKYLWNN----   75 (173)
T ss_dssp             HHHHHHHHHHHHGG-GTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTT--CSSSBCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHhCCCcchhhhccCCHHHHHHHHHHhccC--CCCcccchhhhhhhhh----
Confidence            34577888877744 7899999987665432111    11111123344444444222  2345888888877442    


Q ss_pred             CCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC-CCC
Q 005908          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP  349 (670)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-~~p  349 (670)
                                                                  ...++..|+.||.|++|.++..|+..++...- ..|
T Consensus        76 --------------------------------------------~~~~~~~f~~~D~d~~G~I~~~el~~~L~~~g~~~~  111 (173)
T d1alva_          76 --------------------------------------------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLN  111 (173)
T ss_dssp             --------------------------------------------HHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCC
T ss_pred             --------------------------------------------hhHHHHHHHHhccCCCCeecHHHHHHHHHHHHHhhH
Confidence                                                        22356678888888888888888766665431 111


Q ss_pred             CCCCCCCCCccccCCCccchhhhHhh
Q 005908          350 WDEAPYKDAAETTALGNLTLKGFVSK  375 (670)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~l~~  375 (670)
                      ...-..-.....+..|.|++..|+..
T Consensus       112 ~~~~~~~~~~d~d~~G~i~~~EF~~~  137 (173)
T d1alva_         112 EHLYSMIIRRYSDEGGNMDFDNFISC  137 (173)
T ss_dssp             HHHHHHHHHHHTCSSSCBCHHHHHHH
T ss_pred             HHHHHHhhccccCCCCeEeHHHHHHH
Confidence            10000000122255666776666553

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.17  Score=48.39  Aligned_cols=27  Identities=19%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHhc
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      ..+.++-|+|.|.+|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            356789999999999999999988864

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.13  Score=40.02  Aligned_cols=30  Identities=17%  Similarity=0.132  Sum_probs=25.0

Q ss_pred             hHHHHHHHhhhhhcCCCCCCCCHhhHhhhh
Q 005908          313 EAVEFLRGIFGLYDIDNDGAVRPAELEDLF  342 (670)
Q Consensus       313 ~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f  342 (670)
                      ...+.+..+|+..|.|+||.++.+|+....
T Consensus        65 ~~~~~v~~~~~~~D~d~DG~Is~~EF~~~~   94 (99)
T d1snla_          65 ERLRMREHVMKNVDTNQDRLVTLEEFLAST   94 (99)
T ss_dssp             HHHHHHHHHHHHTCSSCSSEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence            345578889999999999999999986654

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=89.42  E-value=0.39  Score=42.01  Aligned_cols=124  Identities=16%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHhhhhc-------CCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHH
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEFQVKCF-------NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~-------~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (670)
                      +.++++|...+ +.++.++..|+...-....       ...+....+..+.......     .+..++++.|..++..  
T Consensus        18 ~~~r~~F~~~d-~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d-----~~G~I~~~EF~~~~~~--   89 (186)
T d1df0a1          18 DGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDED-----GSGKLGLKEFYILWTK--   89 (186)
T ss_dssp             HHHHHHHHHHH-GGGTCEEHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHCCS-----SSSEECHHHHHHHHHH--
T ss_pred             HHHHHHHHHHc-CCCCeEcHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHcCC-----CCCcccHHHHHHHHHh--
Confidence            34567777666 6788999998876543321       1223333444443333221     1334888888777432  


Q ss_pred             HcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC-
Q 005908          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-  347 (670)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~-  347 (670)
                                                                    .+.++..|+.||.|++|.|+..|+.+++..... 
T Consensus        90 ----------------------------------------------~~~~~~~F~~~D~d~sG~I~~~El~~~l~~~g~~  123 (186)
T d1df0a1          90 ----------------------------------------------IQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFK  123 (186)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHCTTCCSCEEGGGHHHHHHHTTEE
T ss_pred             ----------------------------------------------HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Confidence                                                          234678999999999999999999998875421 


Q ss_pred             CC-CCCCCCCCCccccCCCccchhhhHh
Q 005908          348 SP-WDEAPYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       348 ~p-~~~~~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      .| .....+. ....+..|.|++..|+.
T Consensus       124 ~~~~~~~~~~-~~d~d~dg~I~f~eFi~  150 (186)
T d1df0a1         124 LPCQLHQVIV-ARFADDELIIDFDNFVR  150 (186)
T ss_dssp             CCHHHHHHHH-HHHCCSTTEECHHHHHH
T ss_pred             ccHHHHHHHH-HHHcCCCCeEeHHHHHH
Confidence            11 0000000 12235566777776655

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=2.2  Score=36.07  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCc
Q 005908          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (670)
Q Consensus       194 ~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (670)
                      ..+.++.+|...|.+++|.++.+|+...-. -.|..+...+++.+....   .+    +..++.+.|+.+...       
T Consensus        68 ~~~~~~~~F~~fD~d~sG~I~~~El~~~l~-~~G~~l~~~~~~~l~~~~---d~----~g~i~~~eFi~~~~~-------  132 (165)
T d1k94a_          68 ALNAWKENFMTVDQDGSGTVEHHELRQAIG-LMGYRLSPQTLTTIVKRY---SK----NGRIFFDDYVACCVK-------  132 (165)
T ss_dssp             HHHHHHHHHHHHCTTCCSBCCHHHHHHHHH-HTTCCCCHHHHHHHHHHH---CB----TTBCBHHHHHHHHHH-------
T ss_pred             ccchhHHHHHHhCCCCCCeEcHHHHHHHHH-HhhhcCCHHHHHHHHHHc---CC----CCcCcHHHHHHHHHH-------
Confidence            345678899999999999999999876543 346678888777776544   22    235899999886431       


Q ss_pred             cchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCC
Q 005908          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVR  334 (670)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~  334 (670)
                                                               .+.+++.|+++|.|++|.++
T Consensus       133 -----------------------------------------l~~~~~~F~~~D~d~~G~i~  152 (165)
T d1k94a_         133 -----------------------------------------LRALTDFFRKRDHLQQGSAN  152 (165)
T ss_dssp             -----------------------------------------HHHHHHHHHTTCTTCCSEEE
T ss_pred             -----------------------------------------HHHHHHHHHHhCCCCCCcEE
Confidence                                                     23467899999999999764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=89.39  E-value=0.083  Score=49.11  Aligned_cols=23  Identities=43%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -.|++.|+||+|||+|++.+.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999863

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.36  E-value=0.12  Score=49.48  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ..+..+-|+|.|.+|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            356679999999999999999988853

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.33  E-value=0.4  Score=33.81  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=21.3

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHH
Q 005908          196 RALKRIFIICDHDMDGALNDAELNE  220 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~  220 (670)
                      +.++++|...|.+++|.++..++..
T Consensus         3 eel~~aF~~fD~d~~G~I~~~el~~   27 (65)
T d1fw4a_           3 EEIREAFRVFDKDGNGYISAAELRH   27 (65)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHH
Confidence            3578899999999999999998754

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.21  Score=43.17  Aligned_cols=125  Identities=20%  Similarity=0.241  Sum_probs=72.3

Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHhhhh-c---CCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCc
Q 005908          198 LKRIFIICDHDMDGALNDAELNEFQVKC-F---NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (670)
Q Consensus       198 l~ri~~~~d~~~~~~l~~~el~~~q~~~-~---~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (670)
                      ++..|...+ +.+|.++..|+...-... .   ..++....+..+.....   .+  .+..++++.|+.++...      
T Consensus         9 ~~~~F~~~~-~~dG~Is~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~~~D---~d--~~G~I~f~EF~~~~~~~------   76 (172)
T d1juoa_           9 LYGYFAAVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLD---RD--MSGTMGFNEFKELWAVL------   76 (172)
T ss_dssp             THHHHHHHH-TTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHC---TT--CSSCEEHHHHHHHHHHH------
T ss_pred             HHHHHHHhC-CCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHC---CC--CCCceehHHHHHHHHhh------
Confidence            455565554 568899999987654332 2   22344445555544432   22  24458899998875422      


Q ss_pred             cchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCC
Q 005908          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA  353 (670)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~  353 (670)
                                                                .-+...|+.||.|++|.++.+|+..++...........
T Consensus        77 ------------------------------------------~~~~~~f~~~D~d~sG~i~~~El~~~l~~~g~~ls~~~  114 (172)
T d1juoa_          77 ------------------------------------------NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQA  114 (172)
T ss_dssp             ------------------------------------------HHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHH
T ss_pred             ------------------------------------------hhhhHHHHHhCcCCCCcCCHHHHHHHHHHHHHhhhHHH
Confidence                                                      12456799999999999999999888876432211110


Q ss_pred             CCCCCccccCCCccchhhhHhhh
Q 005908          354 PYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      ....-...+..+.+++..|++..
T Consensus       115 ~~~l~~~~d~~g~i~~~eF~~~~  137 (172)
T d1juoa_         115 VNSIAKRYSTNGKITFDDYIACC  137 (172)
T ss_dssp             HHHHHHHTCSSSSEEHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcCHHHHHHHH
Confidence            00000112445667776665543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.22  E-value=0.13  Score=47.95  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       422 ~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ..-.++|.|+||+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.15  E-value=0.11  Score=46.77  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHhc
Q 005908          420 ERNVFRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       420 ~~~~~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      .....-|.+.|.||+|||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35567899999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.96  E-value=0.086  Score=49.33  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~  445 (670)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.96  E-value=0.11  Score=46.55  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998864

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=88.91  E-value=0.19  Score=44.32  Aligned_cols=128  Identities=17%  Similarity=0.150  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCC----CCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAP----LQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~----l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (670)
                      +.++++|...+.+ +|.++..|+...-..+....    ......+.++..+...-.+  .+.-+.++.|..++.      
T Consensus        20 ~~~r~~F~~~d~~-dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~li~~~D~d--~~G~i~~~EF~~l~~------   90 (188)
T d1qxpa2          20 DNFKTLFSKLAGD-DMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRD--GNGKLGLVEFNILWN------   90 (188)
T ss_dssp             -------CCCCCS-SSSCCCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC----CCCCCSSSHHHHHH------
T ss_pred             HHHHHHHHHHcCC-CCEECHHHHHHHHHHhCccccccccccCCHHHHHHHHHHhcCC--CCCcccHHHHHHHHh------
Confidence            4577888877744 78899888755432221111    0011123344444443221  133377778877643      


Q ss_pred             CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC
Q 005908          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD  351 (670)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~  351 (670)
                                                                -.+.++..|+.||.|++|.|+..|+..++...-. +..
T Consensus        91 ------------------------------------------~~~~~~~~F~~~D~d~sG~i~~~El~~~l~~~g~-~~~  127 (188)
T d1qxpa2          91 ------------------------------------------RIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGF-KLP  127 (188)
T ss_dssp             ------------------------------------------HHHHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTE-ECC
T ss_pred             ------------------------------------------hhHHHHHHHHHhCCCCCCEECHHHHHHHHHHhhh-cCC
Confidence                                                      1235778999999999999999999888875311 111


Q ss_pred             CCCCCC--CccccCCCccchhhhHhh
Q 005908          352 EAPYKD--AAETTALGNLTLKGFVSK  375 (670)
Q Consensus       352 ~~~~~~--~~~~~~~~~~~~~~~l~~  375 (670)
                      .+....  ....+..|.+++..|++.
T Consensus       128 ~~~~~~l~~~~~~~dg~i~f~eFi~~  153 (188)
T d1qxpa2         128 CQLHQVIVARFADDELIIDFDNFVRC  153 (188)
T ss_dssp             HHHHHHHHHHTSCSSSBCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcCCHHHHHHH
Confidence            110000  011256667777777654

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=88.82  E-value=1.4  Score=38.48  Aligned_cols=66  Identities=17%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHH
Q 005908          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       193 ~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~  265 (670)
                      .....++.+|...|.+++|.++..|+...-. ..+..+....++.+...   . .+  .+..++++.|+.+..
T Consensus        90 ~~~~~~~~~F~~~D~d~sG~i~~~El~~~l~-~~g~~~~~~~~~~l~~~---~-~~--~dg~i~f~eFi~~~~  155 (188)
T d1qxpa2          90 NRIRNYLTIFRKFDLDKSGSMSAYEMRMAIE-AAGFKLPCQLHQVIVAR---F-AD--DELIIDFDNFVRCLV  155 (188)
T ss_dssp             HHHHHHHHHHGGGCTTCCSCCBHHHHHHHHH-HTTEECCHHHHHHHHHH---T-SC--SSSBCCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCCCCEECHHHHHHHHH-HhhhcCCHHHHHHHHHH---h-cC--CCCcCCHHHHHHHHH
Confidence            4456678899999999999999999876543 34555665544444433   2 11  244599999988753

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=88.79  E-value=0.37  Score=35.28  Aligned_cols=28  Identities=14%  Similarity=0.223  Sum_probs=22.5

Q ss_pred             HHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          317 FLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       317 ~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                      -+..+|+.+|.|++|.++.+|+..+++.
T Consensus        46 e~~~~~~~~D~d~~G~I~~~EF~~~m~k   73 (77)
T d1oqpa_          46 ELQEMIAEADRNDDNEIDEDEFIRIMKK   73 (77)
T ss_dssp             HHHHHHHHHCCSSSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence            3567888899999999999998777653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=88.67  E-value=0.092  Score=50.61  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      --|+++|+||||||.|.+++.+.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            35789999999999999999864

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.077  Score=44.17  Aligned_cols=105  Identities=19%  Similarity=0.226  Sum_probs=68.9

Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchh
Q 005908          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (670)
Q Consensus       198 l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (670)
                      ++++|...|.+++|.++..++...-+ .++..++..++..+...+..   ....+..++++.|..+.........     
T Consensus         2 ~ke~F~~~D~d~~G~I~~~el~~~l~-~lg~~~t~~e~~~~~~~~~~---~~~~~~~i~~~ef~~~~~~~~~~~~-----   72 (139)
T d1w7jb1           2 FKEAFELFDRVGDGKILYSQCGDVMR-ALGQNPTNAEVLKVLGNPKS---DELKSRRVDFETFLPMLQAVAKNRG-----   72 (139)
T ss_dssp             HHHHHHHHCCSSSSEEESTTHHHHHH-HTTCCCCHHHHHHHTTCCCH---HHHTTCEEEHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhCCCCCeECHHHHHHHHH-HhccCCCHHHHHHHHHHHhc---ccccCCceeeeccchhhHhhhhhcc-----
Confidence            56789999999999999999876554 46777787776665432211   1122344777777665432210000     


Q ss_pred             HHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                                                        ....+-++..|+.+|.|++|.++.+|+..++...
T Consensus        73 ----------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~  106 (139)
T d1w7jb1          73 ----------------------------------QGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTL  106 (139)
T ss_dssp             ---------------------------------------CCHHHHHTTCTTSSSEEEHHHHHHHHHHS
T ss_pred             ----------------------------------ccHHHHHHHhhhhccCCCCCeEeHHHHHHHHHHh
Confidence                                              0011125678999999999999999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.44  E-value=0.1  Score=48.43  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ..+++.|+||+||||++.++.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999975

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.38  E-value=0.13  Score=48.28  Aligned_cols=25  Identities=24%  Similarity=0.218  Sum_probs=19.3

Q ss_pred             ceeEE-EEEcCCCCcHHHHHHHHhcC
Q 005908          422 NVFRC-LLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       422 ~~~kI-~ivG~~~vGKSSLin~l~~~  446 (670)
                      ....+ .+.|+||+|||++++++...
T Consensus        44 ~~~~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          44 DVNMIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHH
Confidence            33444 45699999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.17  E-value=0.11  Score=47.25  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .+++.|+||+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999998864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.07  E-value=0.11  Score=47.48  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .++|.|++|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999998754

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=88.03  E-value=0.79  Score=33.81  Aligned_cols=67  Identities=21%  Similarity=0.317  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHH
Q 005908          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~  265 (670)
                      ++....++++|...|.+++|.++..|+...-... + .++..++..+.+.+.   .+  .+..++++.|+.++.
T Consensus         2 ~ee~~e~~~~F~~~D~d~~G~I~~~El~~~l~~l-g-~~~~~ei~~~~~~~D---~d--~~G~I~~~EF~~~~~   68 (81)
T d2opoa1           2 PQDIADRERIFKRFDTNGDGKISSSELGDALKTL-G-SVTPDEVRRMMAEID---TD--GDGFISFDEFTDFAR   68 (81)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTT-T-TCCHHHHHHHHHHHC---TT--CSSEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHh-h-cCCHHHHHHHHHHhC---CC--CCCeEeHHHHHHHHH
Confidence            5667788999999999999999999998765443 4 457767666555442   22  134499999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.00  E-value=0.11  Score=47.44  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      ..+++.|+||+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.93  E-value=0.22  Score=46.96  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             cCCceeEEEEEcCCCCcHHHHHHHHh
Q 005908          419 TERNVFRCLLFGPQNAGKSALLNSFL  444 (670)
Q Consensus       419 ~~~~~~kI~ivG~~~vGKSSLin~l~  444 (670)
                      ..+.++-|+|-|.+|+|||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34568999999999999999998775

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.85  E-value=0.41  Score=37.75  Aligned_cols=27  Identities=19%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             HHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908          317 FLRGIFGLYDIDNDGAVRPAELEDLFL  343 (670)
Q Consensus       317 ~~~~~f~~~~~~~~~~l~~~~~~~~f~  343 (670)
                      -+..+|+.+|.|+||.++.+|+..++.
T Consensus        81 ~~~~~~~~~D~d~dG~I~~~EF~~~m~  107 (108)
T d1rroa_          81 ETKSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             HHHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCCeEeHHHHHHHHc
Confidence            467889999999999999999887764

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=87.84  E-value=2.4  Score=36.38  Aligned_cols=64  Identities=14%  Similarity=0.195  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHH
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~  264 (670)
                      ...+..+|...|.++++.++.+++...-. .++..+...+++.+.+.+...     .++.++.+.|+.+.
T Consensus        83 ~~~~~~~F~~~D~~~~g~I~~~el~~~l~-~~g~~ls~~e~~~i~~~~d~~-----~dg~I~~~eF~~~~  146 (182)
T d1y1xa_          83 ILSMREGFRKRDSSGDGRLDSNEVRAALL-SSGYQVSEQTFQALMRKFDRQ-----RRGSLGFDDYVELS  146 (182)
T ss_dssp             HHHHHHHHHHHCTTSSSCBCHHHHHHHHH-TTSCCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHH
T ss_pred             ccccccchhccccccchhhhhHHHHHHHH-HhCCchhHHHHHHHHhhcccC-----CCCCcCHHHHHHHH
Confidence            34567888999999999999999877654 467888888877766544322     25569999998884

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.74  E-value=0.12  Score=38.06  Aligned_cols=66  Identities=18%  Similarity=0.344  Sum_probs=45.3

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC---CCCCCCccccCCCccchhhhHhh
Q 005908          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE---APYKDAAETTALGNLTLKGFVSK  375 (670)
Q Consensus       309 ~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~l~~  375 (670)
                      .||.+-.+-++..|+.||.|++|.++..|+..++...-. ++..   ...-.....+..|.|++..|+..
T Consensus         3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~-~~t~~e~~~~~~~~D~~~~g~I~~~eF~~~   71 (77)
T d1f54a_           3 NLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGL-SPSEAEVNDLMNEIDVDGNHQIEFSEFLAL   71 (77)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTC-CCCHHHHHHHHHTTCCSSCCEEEHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            577888888999999999999999999999988875421 1111   11112233456677777766653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=87.69  E-value=0.12  Score=46.68  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      +-|+|.|+|||||||+...|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46888899999999999999864

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.67  E-value=0.44  Score=34.83  Aligned_cols=69  Identities=20%  Similarity=0.358  Sum_probs=53.3

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~  264 (670)
                      ++++-...++.+|...|.+++|.++..++...- ..++..++..++..+...+...     .+..++++.|+.++
T Consensus         4 lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l-~~~g~~~t~~e~~~~~~~~D~~-----~~g~I~~~eF~~~m   72 (77)
T d1f54a_           4 LTEEQIAEFKEAFALFDKDNNGSISSSELATVM-RSLGLSPSEAEVNDLMNEIDVD-----GNHQIEFSEFLALM   72 (77)
T ss_dssp             CCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHH-HHHTCCCCHHHHHHHHHTTCCS-----SCCEEEHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHH-HHhCCCCCHHHHHHHHHHhCCC-----CCCeEeHHHHHHHH
Confidence            455667788999999999999999999998775 4468888888877766554322     35559999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.66  E-value=0.16  Score=47.32  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -.|++.|+||+|||+|++.+.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            45999999999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.62  E-value=0.12  Score=46.96  Aligned_cols=22  Identities=45%  Similarity=0.616  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999999764

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=87.53  E-value=0.061  Score=40.51  Aligned_cols=66  Identities=17%  Similarity=0.362  Sum_probs=44.3

Q ss_pred             ecchhHHHHHHHhhhhhcCCC-CCCCCHhhHhhhhccCCCCC--CCCCCCCCCccccCCCccchhhhHh
Q 005908          309 ELASEAVEFLRGIFGLYDIDN-DGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       309 ~ls~~~~~~~~~~f~~~~~~~-~~~l~~~~~~~~f~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      +||.+-.+-++..|+.||.|+ +|.++..|+..++...-..|  ......-.....+..|.|++..|+.
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~el~~~i~~~D~d~~G~I~f~eFl~   76 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV   76 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCCSSBCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            578888899999999999995 89999999999987532222  1111111123335566777666654

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.45  E-value=2.4  Score=35.92  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHH
Q 005908          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (670)
Q Consensus       194 ~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~  264 (670)
                      ....+..+|+..|.+++|.++..|+...-.. .+..+....++.+.....    +  .+..++.+.|+.+.
T Consensus        75 ~~~~~~~~f~~~D~d~~G~I~~~el~~~L~~-~g~~~~~~~~~~~~~~d~----d--~~G~i~~~EF~~~~  138 (173)
T d1alva_          75 NIKKWQAIYKQFDVDRSGTIGSSELPGAFEA-AGFHLNEHLYSMIIRRYS----D--EGGNMDFDNFISCL  138 (173)
T ss_dssp             HHHHHHHHHHHHCTTCCSSBCTTTHHHHHHH-HTCCCCHHHHHHHHHHHT----C--SSSCBCHHHHHHHH
T ss_pred             hhhHHHHHHHHhccCCCCeecHHHHHHHHHH-HHHhhHHHHHHHhhcccc----C--CCCeEeHHHHHHHH
Confidence            4455678888999999999999998776554 466677766665554432    1  24569999998874

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.41  E-value=1.5  Score=33.36  Aligned_cols=70  Identities=23%  Similarity=0.307  Sum_probs=51.9

Q ss_pred             cHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHH
Q 005908          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (670)
Q Consensus       191 ~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (670)
                      .++-...++.+|...|.+++|.++.+|+..+-..   ..+....++.+.+.+...     .++.++.+.|+.++.+..
T Consensus         5 t~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~---~~l~~~~l~~i~~~~D~d-----~dG~l~~~EF~~am~Li~   74 (95)
T d1c07a_           5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLK---TGLPSTLLAHIWSLCDTK-----DCGKLSKDQFALAFHLIS   74 (95)
T ss_dssp             CSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHT---TTCCHHHHHHHHHHHCTT-----CSSSEETTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHh---cCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHHHH
Confidence            3455567789999999999999999998877544   346777777776665432     355699999998876543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=87.28  E-value=0.13  Score=47.67  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      --|++.|+||+|||+|++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999964

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.27  E-value=0.04  Score=38.87  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=35.6

Q ss_pred             HHHhhhhhcCCCCCCCCHhhHhhhhccCC-CCC-CCCCCCCCCccccCCCccchhhhH
Q 005908          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP-WDEAPYKDAAETTALGNLTLKGFV  373 (670)
Q Consensus       318 ~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~l  373 (670)
                      ++..|+.||.|++|.++..|+..++...- ..+ -.....-.....+..|.+++..|+
T Consensus         3 l~~aF~~fD~~~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~D~d~dg~I~~~eFl   60 (61)
T d2fcea1           3 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFI   60 (61)
T ss_dssp             HHHHHHHHCTTCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCTTSEECHHHHH
T ss_pred             HHHHHHHHCCCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHhc
Confidence            67899999999999999999988887542 111 000111122344556666665554

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.13  E-value=0.22  Score=46.91  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=22.3

Q ss_pred             CCCcceEEEEEcCCCCCHHHHHHHHH
Q 005908            8 SSRTGVRVVVVGDRGTGKSSLIAAAA   33 (670)
Q Consensus         8 ~~~~~~kI~ivG~~~vGKSSLi~~l~   33 (670)
                      ..+..+=|.|-|.+|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            45567899999999999999998774

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=87.05  E-value=0.54  Score=33.45  Aligned_cols=65  Identities=22%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHH
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~  265 (670)
                      +.+.++|...|.+++|.++..++...-...-..+++..+++.+.+.+...     .+.-++++.|+.++.
T Consensus         2 eel~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d-----~dG~i~~~EF~~~m~   66 (68)
T d1c7va_           2 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADED-----GNGVIDIPEFMDLIK   66 (68)
T ss_dssp             HHHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSS-----GGGSEEHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC-----CCCcEeHHHHHHHHH
Confidence            35788999999999999999999887666545568888888776654422     245589999988754

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.82  E-value=0.39  Score=42.16  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (670)
Q Consensus       315 ~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~  347 (670)
                      .+....+|+.+|.|+||.++.+|+.......|.
T Consensus       146 ~~~v~~if~~~D~d~dG~Is~~EF~~~~~~~p~  178 (190)
T d1fpwa_         146 EMRVKKIFKLMDKNEDGYITLDEFREGSKVDPS  178 (190)
T ss_dssp             HHHHHHHHHHHTTTCSSEEEHHHHHHHHHSSTT
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHCHH
Confidence            456778999999999999999999888777553

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=86.58  E-value=1.2  Score=38.63  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCcc
Q 005908          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (670)
Q Consensus       195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  274 (670)
                      .+.+..+|...|.+++|.++..|+...-.. .+..+.....+.+..    ...+  .+..++++.|+.+..         
T Consensus        90 ~~~~~~~F~~~D~d~sG~I~~~El~~~l~~-~g~~~~~~~~~~~~~----~d~d--~dg~I~f~eFi~~~~---------  153 (186)
T d1df0a1          90 IQKYQKIYREIDVDRSGTMNSYEMRKALEE-AGFKLPCQLHQVIVA----RFAD--DELIIDFDNFVRCLV---------  153 (186)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEGGGHHHHHHH-TTEECCHHHHHHHHH----HHCC--STTEECHHHHHHHHH---------
T ss_pred             HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHhcccHHHHHHHHH----HHcC--CCCeEeHHHHHHHHH---------
Confidence            355678899999999999999998876543 355566544433332    2222  245599999988742         


Q ss_pred             chhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCC
Q 005908          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVR  334 (670)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~  334 (670)
                                                             -.+.++..|+.||.|++|.++
T Consensus       154 ---------------------------------------~l~~~~~~F~~~D~~~~G~i~  174 (186)
T d1df0a1         154 ---------------------------------------RLEILFKIFKQLDPENTGTIQ  174 (186)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHCTTCCSEEE
T ss_pred             ---------------------------------------HHHHHHHHHHHhCCCCCCcEE
Confidence                                                   123578899999999999763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.31  Score=43.60  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q 005908           14 RVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      -+++.|++|+||||++..+...
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            3899999999999999987653

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=1.1  Score=33.04  Aligned_cols=27  Identities=15%  Similarity=0.166  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCChHHHHH
Q 005908          194 CVRALKRIFIICDHDMDGALNDAELNE  220 (670)
Q Consensus       194 ~~~~l~ri~~~~d~~~~~~l~~~el~~  220 (670)
                      ....+.+.|...|.+++|.++.+++..
T Consensus        18 ~~~~l~~~F~~~D~~~~G~i~~~ef~~   44 (83)
T d1wlza1          18 HYHAITQEFENFDTMKTNTISREEFRA   44 (83)
T ss_dssp             THHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCceEChhHHHH
Confidence            345788899999999999999998754

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=86.20  E-value=0.052  Score=39.21  Aligned_cols=57  Identities=19%  Similarity=0.377  Sum_probs=39.6

Q ss_pred             HHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCC---CCCCccccCCCccchhhhHh
Q 005908          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAP---YKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       318 ~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~l~  374 (670)
                      |+.+|+.||.|++|.|+..|+..++...-..|....-   .-.....+..|.|++..|+.
T Consensus         4 l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d~dG~i~~~EF~~   63 (68)
T d1c7va_           4 ILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD   63 (68)
T ss_dssp             HHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHH
T ss_pred             HHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            7899999999999999999999999876444443211   11223446666666666553

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.11  E-value=0.18  Score=45.25  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      =|+|-|..||||||+++.|..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388899999999999998864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.09  E-value=0.18  Score=45.02  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~  445 (670)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=86.04  E-value=0.17  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      --+.+.|+||+|||++++++...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45899999999999999999863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=0.19  Score=44.87  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      +.--+.|.|+||+|||+|...++.+-
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34457899999999999999997644

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.98  E-value=0.22  Score=43.24  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      ..-|+|.|++|+||||+.-.|....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            4568999999999999999998754

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.92  E-value=0.031  Score=40.30  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=37.7

Q ss_pred             HHHhhhhhcCCCCCCCCHhhHhhhhccCCC-CC-CCCCCCCCCccccCCCccchhhhHhh
Q 005908          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP-WDEAPYKDAAETTALGNLTLKGFVSK  375 (670)
Q Consensus       318 ~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~-~p-~~~~~~~~~~~~~~~~~~~~~~~l~~  375 (670)
                      .+.+|+.||.|++|.++..|+..++...-. .+ ............+..|.|++..|+..
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~   62 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC   62 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHHHHHhccccchHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            478999999999999999999988876421 11 00111112234466677777766654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.88  E-value=0.17  Score=47.20  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      --|.+.|+||+|||+|++++.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            45899999999999999999874

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=85.85  E-value=0.16  Score=51.38  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      +|+++|++|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999975

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.82  E-value=0.13  Score=47.28  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 005908          425 RCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~  445 (670)
                      -+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.81  E-value=0.17  Score=46.09  Aligned_cols=22  Identities=23%  Similarity=0.608  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+.+.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4889999999999999999864

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.70  E-value=1.7  Score=37.31  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=28.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908          314 AVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (670)
Q Consensus       314 ~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~  347 (670)
                      ..+....+|+.+|.|+||.|+.+|...+.+..|.
T Consensus       133 ~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~~p~  166 (183)
T d2zfda1         133 IEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS  166 (183)
T ss_dssp             HHHHHHHHHHHHCSSCSSEECHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHCHH
Confidence            4456667999999999999999999988876544

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.70  E-value=0.22  Score=46.65  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      .-.|++.|+||+|||+|++.+.+.-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3459999999999999999997643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.62  E-value=0.18  Score=45.70  Aligned_cols=22  Identities=14%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+.+.|+||+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            5899999999999999988753

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=85.55  E-value=0.58  Score=36.92  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.5

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHH
Q 005908          196 RALKRIFIICDHDMDGALNDAELNE  220 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~  220 (670)
                      ..++.+|...|.+++|+++.+|+..
T Consensus        41 ~~l~~~F~~~D~d~~G~I~~~El~~   65 (109)
T d5pala_          41 AQVKEVFEILDKDQSGFIEEEELKG   65 (109)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHT
T ss_pred             HHHHHHHhhhcCCCCCeEcHHHHHH
Confidence            3578899999999999999998754

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.25  E-value=0.18  Score=38.71  Aligned_cols=64  Identities=19%  Similarity=0.293  Sum_probs=43.1

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC-CCCCCCccccCCCccchhhhH
Q 005908          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE-APYKDAAETTALGNLTLKGFV  373 (670)
Q Consensus       309 ~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~l  373 (670)
                      .||++-.+.++.+|+.+|.|++|.++.+|+..+|... +.|-.. ...-.....+.+|.++...|+
T Consensus         2 ~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~-~l~~~~l~~i~~~~D~d~dG~l~~~EF~   66 (92)
T d1fi6a_           2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS-KLPILELSHIWELSDFDKDGALTLDEFC   66 (92)
T ss_dssp             CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH-SSCHHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHc-cCCHHHHHHHHHHhCCCCCCeecHHHHH
Confidence            3688889999999999999999999999998888763 222000 000011334566666666554

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.071  Score=40.13  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=41.6

Q ss_pred             HHHHHhhhhhcCCCCCCCCHhhHhhhhccC-CCC-CCCCCCCCCCccccCCCccchhhhHhhh
Q 005908          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PES-PWDEAPYKDAAETTALGNLTLKGFVSKW  376 (670)
Q Consensus       316 ~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~-~~~-p~~~~~~~~~~~~~~~~~~~~~~~l~~w  376 (670)
                      .-++..|+.||.+++|.++.+|+..++... +.. +.....+-.....+.+|.|++..|+..+
T Consensus        20 ~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~f   82 (83)
T d1wlza1          20 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF   82 (83)
T ss_dssp             HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhccccCCCCcEeHHHHHHHh
Confidence            347789999999999999999998887753 111 1111112233445777888888887754

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.058  Score=41.94  Aligned_cols=63  Identities=16%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC-CCCCCCccccCCCccchhhhH
Q 005908          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE-APYKDAAETTALGNLTLKGFV  373 (670)
Q Consensus       309 ~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~l  373 (670)
                      .||++-.+.++++|+.+| |++|.++-.|+..+|... +.|-.. ...-.....+..|.++...|+
T Consensus         3 ~ls~ee~~~y~~~F~~~D-~~~G~i~~~el~~~l~~~-gl~~~~L~~Iw~~~D~~~dG~l~~~EF~   66 (95)
T d2jxca1           3 AVKPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNS-KLPVDILGRVWELSDIDHDGMLDRDEFA   66 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTC-CBTTEEEHHHHHHHHTTS-SCCHHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHHHc-CCCHHHHHHHHHHhcCCCCCeEcHHHHH
Confidence            478888999999999999 899999999999999864 233100 000011334566667666553

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=85.14  E-value=0.26  Score=42.73  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      ..-|+|.|++|+||||+...|....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            4568999999999999999998754

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.04  E-value=0.94  Score=31.24  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHH
Q 005908          197 ALKRIFIICDHDMDGALNDAELNEF  221 (670)
Q Consensus       197 ~l~ri~~~~d~~~~~~l~~~el~~~  221 (670)
                      .+.++|+..|.+++|.++..++...
T Consensus         2 el~~aF~~fD~~~~G~I~~~el~~~   26 (61)
T d2fcea1           2 DFVKAFQVFDKESTGKVSVGDLRYM   26 (61)
T ss_dssp             HHHHHHHHHCTTCCSCEEHHHHHHH
T ss_pred             hHHHHHHHHCCCCCCeEeHHHHHHH
Confidence            4678899999999999999987554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=85.01  E-value=0.31  Score=46.82  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=21.5

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .++.-.++++|++|||||.|+..|..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHh
Confidence            34445789999999999999999865

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.97  E-value=0.2  Score=47.19  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        12 ~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      ..-|+|+|.+|+|||||+..+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=84.95  E-value=2.4  Score=35.57  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             CcceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           10 RTGVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      ++..-|++-|+=|+|||||++.++..-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            455678999999999999999998654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.75  E-value=0.21  Score=45.33  Aligned_cols=22  Identities=23%  Similarity=0.600  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 005908          425 RCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       425 kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      .+.+.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4889999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=84.56  E-value=0.28  Score=48.12  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      --+++.|+||+|||+|++.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=84.39  E-value=0.63  Score=36.69  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             HHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (670)
Q Consensus       316 ~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~  345 (670)
                      .-++.+|+.||.|++|.++.+|+..++...
T Consensus        41 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~l   70 (109)
T d1pvaa_          41 NDVKKVFKAIDADASGFIEEEELKFVLKSF   70 (109)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred             HHHHHHhhCccCCCcCeEcHHHHHHHHHHh
Confidence            347889999999999999999998887653

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.34  E-value=0.041  Score=40.72  Aligned_cols=57  Identities=18%  Similarity=0.320  Sum_probs=0.0

Q ss_pred             HHHhhhhhcCCCCCCCCHhhHhhhhccC--CCCCCCCCCCCCCccccCCCccchhhhHh
Q 005908          318 LRGIFGLYDIDNDGAVRPAELEDLFLTA--PESPWDEAPYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       318 ~~~~f~~~~~~~~~~l~~~~~~~~f~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      |+..|+.||.|++|.++..|+..++...  +..++...........+..|.|++..|+.
T Consensus        11 l~~~F~~fD~~~~G~I~~~el~~~l~~lg~~~~~~e~~~~~~~~D~d~dg~I~~~EF~~   69 (75)
T d1jc2a_          11 LANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLK   69 (75)
T ss_dssp             HHHHHHHHCCSTTSSEEHHHHHHHHHHSSSCCCHHHHHHHHHHHCSSSCSEECHHHHHH
T ss_pred             HHHHHHHHcCCCcCeEcHHHHHHHHHhcCCCccHHHHHHHHHHhCCCCCCcEeHHHHHH

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=84.33  E-value=0.27  Score=42.59  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPF  448 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~  448 (670)
                      .=|+|.|++|+||||+.-.|.....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999987654

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=84.20  E-value=0.06  Score=40.42  Aligned_cols=59  Identities=19%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             HHHHHhhhhhcCCCCCCCCHhhHhhhhccC--CCCCCCCCCCCCCccccCCCccchhhhHh
Q 005908          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTA--PESPWDEAPYKDAAETTALGNLTLKGFVS  374 (670)
Q Consensus       316 ~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~l~  374 (670)
                      +-|+..|+.||.|++|.++..|+..++...  +..+-...........+..|.|++..|+.
T Consensus        15 e~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ev~~~~~~~D~d~dg~I~~~EF~~   75 (81)
T d1fi5a_          15 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE   75 (81)
T ss_dssp             HHHHHHHHHHCSSCSSEECHHHHHHHHHTSSSCCCHHHHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHH

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=84.18  E-value=1.2  Score=37.64  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       421 ~~~~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      +...-|++-|+-|+|||||++.++..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhh
Confidence            44567999999999999999999854

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.15  E-value=0.23  Score=45.36  Aligned_cols=26  Identities=35%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      +.--+.|.|+||+|||+|+..++..-
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            33457899999999999999997543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=0.28  Score=44.00  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .=|+|-|..||||||++..|..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4488889999999998888754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=84.07  E-value=0.13  Score=49.99  Aligned_cols=21  Identities=57%  Similarity=0.822  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .|+++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999863

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.96  E-value=0.5  Score=39.93  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             hHHHhccCCEEEEEEECCChh--hHHH-------HHHHHHHHHHhcCC-CCCEEEEEeCCCC
Q 005908           76 LNEELKRADAVVLTYACNQQS--TLSR-------LSSYWLPELRRLEI-KVPIIVAGCKLDL  127 (670)
Q Consensus        76 ~~~~~~~ad~ii~v~d~~~~~--s~~~-------~~~~~~~~l~~~~~-~~pvilv~NK~Dl  127 (670)
                      ....++++|++++........  +-.+       +...+.+.+.++.+ +.-++++.|-+|.
T Consensus        74 ~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          74 PKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            346789999999988654332  1111       11134555556554 4556677887773

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.86  E-value=0.22  Score=46.58  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 005908          423 VFRCLLFGPQNAGKSALLNSFLERP  447 (670)
Q Consensus       423 ~~kI~ivG~~~vGKSSLin~l~~~~  447 (670)
                      .--|.+.|+||+|||+|++++.+.-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3458999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.84  E-value=0.26  Score=43.91  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      --+.|.|+||+|||+|+..+...
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            35889999999999999998854

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=83.75  E-value=0.37  Score=42.91  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~  446 (670)
                      +-|+|.|..|+||||+++.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            67899999999999999988643

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=83.74  E-value=0.33  Score=43.45  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPF  448 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~  448 (670)
                      +-|+|.|.+|+||||+++.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            5688999999999999998875544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.66  E-value=0.26  Score=45.23  Aligned_cols=26  Identities=31%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      +.--++|.|+||+|||+|..+++..-
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            33457899999999999999997644

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=83.63  E-value=0.34  Score=43.33  Aligned_cols=24  Identities=33%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           13 VRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      +-|+|.|..|+||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            568899999999999999886543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=83.50  E-value=0.41  Score=42.64  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 005908           13 VRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        13 ~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6689999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=83.41  E-value=0.29  Score=42.17  Aligned_cols=26  Identities=35%  Similarity=0.518  Sum_probs=22.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~~   36 (670)
                      ...-|+|.|++|+||||+.-.|+...
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34569999999999999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.19  Score=45.86  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q 005908           14 RVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus        14 kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=83.02  E-value=0.34  Score=42.01  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005908          424 FRCLLFGPQNAGKSALLNSFLERPFS  449 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~~~~~  449 (670)
                      .=|+|.|++|+||||+...|......
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~~   41 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNHL   41 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTCE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence            45899999999999999999876543

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.88  E-value=1.3  Score=38.28  Aligned_cols=134  Identities=14%  Similarity=0.135  Sum_probs=74.3

Q ss_pred             CCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCC
Q 005908          208 DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGD  287 (670)
Q Consensus       208 ~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~  287 (670)
                      +.++.++..++...-...+...-...-.+.+.+.+...     .+.-++++.|+.....+......+..+.+.+.+..+.
T Consensus        35 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~d~~-----~dg~I~~~EF~~~l~~~~~~~~~e~l~~~F~~~D~d~  109 (187)
T d1g8ia_          35 CPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDEN-----KDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDN  109 (187)
T ss_dssp             CTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTT-----CSSEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTC
T ss_pred             CCCCCcCHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcC-----CCCCCcHHHHHHHHHHhccCchhhhHHHHHHHHhcCC
Confidence            34566777766655444444333333334444443222     1233778888888777776666667777777777776


Q ss_pred             CcccCCCCC-CC--C-CC-CCCCCceec-chhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC
Q 005908          288 DLELRDDFL-PV--P-TK-LSPDQSVEL-ASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (670)
Q Consensus       288 ~l~~~~~~~-p~--~-~~-~~~~~~~~l-s~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~  346 (670)
                      +-.+..+-+ ..  . .. ..+...... .....+....+|+.+|.|+||.++.+|..+..+..|
T Consensus       110 dG~i~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~~p  174 (187)
T d1g8ia_         110 DGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADP  174 (187)
T ss_dssp             SSEEEHHHHHHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHCH
T ss_pred             CCeEcHHHHHHHHHHHhhhhcccccCchhhccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHCH
Confidence            554443211 00  0 00 000000000 111234567799999999999999999987766543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=82.74  E-value=0.28  Score=48.14  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      --+++.|+||+|||+|.+.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.73  E-value=2.3  Score=36.42  Aligned_cols=107  Identities=18%  Similarity=0.197  Sum_probs=65.2

Q ss_pred             ccHHHHHHHHHHHHHhCCC--CCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHH
Q 005908          190 LKPRCVRALKRIFIICDHD--MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (670)
Q Consensus       190 ~~~~~~~~l~ri~~~~d~~--~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~  267 (670)
                      ..++-.+.|.+.|...+.+  ++|.++.+++.......... . ..-.+.+.+.+...     .+.-++++.|+.....+
T Consensus        11 Fs~~ei~~L~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~-~~~~~~lf~~~d~~-----~dg~I~f~EFl~~l~~~   83 (183)
T d2zfda1          11 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-E-SLFADRVFDLFDTK-----HNGILGFEEFARALSVF   83 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSC-C-CHHHHHHHHHHCSS-----CSSSBCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhcCCC-C-CHHHHHHHHHHccC-----CCCcCcHHHHHHHHHhh
Confidence            3455666777888766544  68899999886554332222 1 12233333333222     13348888887764322


Q ss_pred             HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (670)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~  344 (670)
                      ..++                                         .....++.+|+.||.|++|.++.+|+..++..
T Consensus        84 ~~~~-----------------------------------------~~~~~~~~~F~~~D~d~~G~Is~~e~~~~~~~  119 (183)
T d2zfda1          84 HPNA-----------------------------------------PIDDKIHFSFQLYDLKQQGFIERQEVKQMVVA  119 (183)
T ss_dssp             STTS-----------------------------------------CHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHH
T ss_pred             hccC-----------------------------------------cHHHHHHHhhcccccCCCCCccHHHHHHHHHH
Confidence            1111                                         12345778999999999999999999887654

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.56  E-value=4.4  Score=34.13  Aligned_cols=62  Identities=16%  Similarity=0.302  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHH
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~  265 (670)
                      ......|+..|.+++|.++.+|+...... .+..+....+..+.+..   ..    +..++.+.|+.++.
T Consensus        77 ~~~~~~f~~~D~d~sG~i~~~El~~~l~~-~g~~ls~~~~~~l~~~~---d~----~g~i~~~eF~~~~~  138 (172)
T d1juoa_          77 NGWRQHFISFDTDRSGTVDPQELQKALTT-MGFRLSPQAVNSIAKRY---ST----NGKITFDDYIACCV  138 (172)
T ss_dssp             HHHHHHHHTTCTTCCSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHT---CS----SSSEEHHHHHHHHH
T ss_pred             hhhhHHHHHhCcCCCCcCCHHHHHHHHHH-HHHhhhHHHHHHHHHHH---Hh----cCCcCHHHHHHHHH
Confidence            44567788999999999999998776544 45667776666555443   11    33488889888754

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=82.56  E-value=1.2  Score=35.87  Aligned_cols=97  Identities=21%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccc
Q 005908          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (670)
Q Consensus       196 ~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (670)
                      ..+++++...|.++++.++.+|+...-..+.... .......++..++..-.++  +.-++.+.|..+..          
T Consensus        36 ~~~~~~~~~~D~~~~g~i~~~Ef~~~~~~~~~~~-~~~~~~~~~~~F~~~D~~~--~g~i~~~el~~~~~----------  102 (134)
T d1jfja_          36 QLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQD-LSDDKIGLKVLYKLMDVDG--DGKLTKEEVTSFFK----------  102 (134)
T ss_dssp             HHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCS-SHHHHHHHHHHHHHHCCSS--SSEEEHHHHHHHHT----------
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccc-ccccccccccccccccccc--CCcccHHHHHHHHH----------
Confidence            3567788889999999999999877655444332 2333344444444432211  22255555444411          


Q ss_pred             hhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhh
Q 005908          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL  341 (670)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~  341 (670)
                                                          ..+.+.+..+|+++|.|+||.++.+|..++
T Consensus       103 ------------------------------------~~~~~~~~~~~~~~D~d~dG~is~~EF~~~  132 (134)
T d1jfja_         103 ------------------------------------KHGIEKVAEQVMKADANGDGYITLEEFLEF  132 (134)
T ss_dssp             ------------------------------------TTTCHHHHHHHHHHHCSSSSEEEHHHHHHH
T ss_pred             ------------------------------------hcCcHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence                                                112245677899999999999999998765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=82.30  E-value=0.33  Score=44.34  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (670)
Q Consensus        11 ~~~kI~ivG~~~vGKSSLi~~l~~~   35 (670)
                      +.--++|.|+||+|||+|+.++..+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4456789999999999999999765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.03  E-value=0.38  Score=47.14  Aligned_cols=26  Identities=19%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             CCcceEEEEEcCCCCCHHHHHHHHHc
Q 005908            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (670)
Q Consensus         9 ~~~~~kI~ivG~~~vGKSSLi~~l~~   34 (670)
                      ..+.-.|+++|++|||||-|.++|..
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            34456699999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.03  E-value=0.2  Score=47.22  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=16.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 005908          424 FRCLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       424 ~kI~ivG~~~vGKSSLin~l~~  445 (670)
                      +-|+|.|.+|+||||+.++|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            3599999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=81.94  E-value=0.1  Score=46.27  Aligned_cols=19  Identities=37%  Similarity=0.555  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 005908          426 CLLFGPQNAGKSALLNSFL  444 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~  444 (670)
                      .+|+|+.|+|||||+.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4678999999999999985

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=81.86  E-value=0.32  Score=43.44  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 005908          426 CLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~  445 (670)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998874

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=81.82  E-value=0.26  Score=43.50  Aligned_cols=20  Identities=40%  Similarity=0.625  Sum_probs=0.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 005908          426 CLLFGPQNAGKSALLNSFLE  445 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~  445 (670)
                      +++.|+|++|||.|+++|++
T Consensus        56 i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          56 LVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEESCGGGCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.79  E-value=0.33  Score=43.68  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 005908          426 CLLFGPQNAGKSALLNSFLER  446 (670)
Q Consensus       426 I~ivG~~~vGKSSLin~l~~~  446 (670)
                      +.|.|++|+|||.|++++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999875

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.72  E-value=0.26  Score=41.00  Aligned_cols=43  Identities=9%  Similarity=0.122  Sum_probs=26.6

Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC
Q 005908           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (670)
Q Consensus        81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~  129 (670)
                      ..+|+  +.+|  ..+=|.+....+...+...  +++|++.|-..|=..
T Consensus        78 ~~~dv--I~ID--E~QFf~d~i~~~~~~~~~~--g~~Viv~GLd~Df~~  120 (139)
T d2b8ta1          78 DETKV--IGID--EVQFFDDRICEVANILAEN--GFVVIISGLDKNFKG  120 (139)
T ss_dssp             TTCCE--EEEC--SGGGSCTHHHHHHHHHHHT--TCEEEEECCSBCTTS
T ss_pred             cCcCE--EEec--hhhhcchhHHHHHHHHHhc--CceEEEEEecccccc
Confidence            34554  4455  5544544222356666666  899999999999543