Citrus Sinensis ID: 005921

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------67

MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVASNSSVDENDRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSSSKGETVDQNVMGTLKNLGQSMLEHIQVIESVLQQEHGQLGSRENFSKNVLVGKGQATAVTALKELRKISNLLSEM

cccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc

ccHHHHHHHEHHHHcHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccccHHHccccHHHHHHcHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEccEEcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHcc

MHELLAPLLYVLHVDVERLSqvrnehedhftdkfdglsfhendltynfDFKKFLDSMEDEigshgnsvkvrsvdeldpeIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDAlmvgsqgsvsmadffahshadgsltcLLPVIEASSAMYHLLSVADSSLHSHLVELgvepqyfgLRWLRVLFGREFSLGDLLIIWDEifasdsskvnkdteddagsgfgilssPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLlnfpvninlKKIIGKTKSLQALALdanlssssppfsgvynqnnpmvvrgsslpsesisprtplnvvpdsywegkwrDLHKAeeqrhdssgkqnqTQKKRWLEKVKLRLsrtesdptprtvdngtkhsrSSIRRSLLEDLSkelgfeedsekdgilevstekdqpsveaevqrqdsvnrefactsderyltgnagseesssifsdpaspvsgandnendsekssvasnssvdendrqshtmpespplpvsqtpddivkdsqsnndsleKSQTVRKVLSGKFQWFWkfgrnsageetsekggvaTETKisannesnqsnskgassndgsckssssskgetvdqNVMGTLKNLGQSMLEHIQVIESVLQQEhgqlgsrenfsknvlvGKGQATAVTALKELRKISNLLSEM

MHELLAPLLYVLHVDVERLSQVRNEHEDhftdkfdglsfheNDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAgsgfgilsspRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSlpsesisprtplnvvpdSYWEGKWRDLHKAeeqrhdssgkqnqtqkkrwlekvklrlsrtesdptprtvdngtkhsrssirrSLLEDLSkelgfeedsekdgilevstekdqpsveaevqrqdsvnrefactsdeRYLTgnagseesssifsdPASPVSGANDNENDSEKSSVAsnssvdendrqshtmpespplpvsqTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFgrnsageetsekggVATETKisannesnqsnskgassndgsckssssskgetvdqNVMGTLKNLGQSMLEHIQVIESVLQQEHGQLGSRENFSKNVLVGKGQATAVTALKELRKISNLLSEM

MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKslqalaldanlssssPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNEndsekssvasnssvdendRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGAssndgscksssssKGETVDQNVMGTLKNLGQSMLEHIQVIESVLQQEHGQLGSRENFSKNVLVGKGQATAVTALKELRKISNLLSEM

***LLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSM************VRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFA*****************FGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALAL****************************************VVPDSYWEGKW******************************************************************************************************************************************************************************************************KVLSGKFQWFWKFG****************************************************************QSMLEHIQVIESVL***************NVLVGKGQATAVTAL*************

MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMAD******************EASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ********************************************************************************************************************************************************************************************************************************************************************************************************************************************SMLEHIQVIESVL******************VGKGQATAVTALKELRKISNLLSEM

MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLH******************KRWLEKVKLRL**********************IRRSLLEDLSKELGFEEDSEKDGILEVS****************SVNREFACTSDERYLT**********************************************************SQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNS***********ATETKISAN****************************VDQNVMGTLKNLGQSMLEHIQVIESVLQQEHGQLGSRENFSKNVLVGKGQATAVTALKELRKISNLLSEM

*HELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDS************KVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMA************TCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFS************************TPLNVVPDSYWEGKWRDLHKA******************WLEKVKLRLSRTES******************************************************************************************************************************************************************LSGKFQWFWKFG*************************************************ETVDQNVMGTLKNLGQSMLEHIQVIESVLQQEHGQLGSRENFSKNVLVGKGQATAVTALKELRKISNLLS**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		669	2.2.26 [Sep-21-2011]
Q80XQ2		815	TBC1 domain family member	yes	no	0.263	0.215	0.310	5e-22
Q92609		795	TBC1 domain family member	yes	no	0.263	0.221	0.314	6e-22
Q54VM3		1173	TBC1 domain family member	yes	no	0.384	0.219	0.209	1e-12
Q54TA5		1016	TBC1 domain family member	no	no	0.133	0.087	0.351	3e-12
Q9NVG8		400	TBC1 domain family member	no	no	0.158	0.265	0.305	3e-08
Q8R3D1		400	TBC1 domain family member	no	no	0.158	0.265	0.312	2e-07
Q9URY3		619	TBC domain-containing pro	yes	no	0.252	0.273	0.246	7e-07

>sp\|Q80XQ2\|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2	Back alignment and function desciption

 Score =  106 bits (265), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 40/216 (18%)

Query: 81  QTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLT 140
           Q  +  S++     E+  +L+ +++EHDAY MF  LM  ++   S    F H    G  T
Sbjct: 222 QAFLHASESAQPSEEMKTLLNPEYLEHDAYAMFSQLMETAEPWFST---FEHDGQKGKET 278

Query: 141 CLLP---------------VIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 185
            + P               V + +    HLL   D  L+ HL  L + PQ +GLRW+R+L
Sbjct: 279 LMAPIPFARPQDLGPTVAIVTKVNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLL 338

Query: 186 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIR 245
           FGREF L DLL++WD +FA DS  +                    +L+  +  +M+LYIR
Sbjct: 339 FGREFPLQDLLVVWDALFA-DSLNL--------------------SLVDYVFTAMLLYIR 377

Query: 246 SSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 281
            +L+++ N  TCL  L+++P+  ++  +I K   L+
Sbjct: 378 DALISS-NYQTCLGLLMHYPIIGDIHSLILKALFLR 412

May act as a GTPase-activating protein for Rab family protein(s).
Mus musculus (taxid: 10090)

>sp\|Q92609\|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1	Back alignment and function description

>sp\|Q54VM3\|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1	Back alignment and function description

>sp\|Q54TA5\|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1	Back alignment and function description

>sp\|Q9NVG8\|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3	Back alignment and function description

>sp\|Q8R3D1\|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1	Back alignment and function description

>sp\|Q9URY3\|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		669
118489839		823	unknown [Populus trichocarpa x Populus d	0.998	0.811	0.685	0.0
255573773		825	conserved hypothetical protein [Ricinus	0.994	0.806	0.677	0.0
224090523		804	predicted protein [Populus trichocarpa]	0.982	0.817	0.675	0.0
225470672		830	PREDICTED: uncharacterized protein LOC10	0.994	0.801	0.663	0.0
449461172		830	PREDICTED: uncharacterized protein LOC10	0.986	0.795	0.626	0.0
449510567		667	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.985	0.988	0.627	0.0
224144337		729	predicted protein [Populus trichocarpa]	0.884	0.812	0.603	0.0
283099385		813	microtubule-associated protein [Nicotian	0.979	0.805	0.600	0.0
357449575		869	TBC1 domain family member-like protein [	0.985	0.758	0.585	0.0
356564825		832	PREDICTED: uncharacterized protein LOC10	0.989	0.795	0.597	0.0

>gi\|118489839\|gb\|ABK96719.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/674 (68%), Positives = 543/674 (80%), Gaps = 6/674 (0%)

Query: 1   MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDE 60
           MHELLAP LYVLH+D E LS+VR ++EDHFTDKFDGL+F ENDLTYNFDFKKFLDSMEDE
Sbjct: 151 MHELLAPFLYVLHIDAEHLSEVRKQYEDHFTDKFDGLAFQENDLTYNFDFKKFLDSMEDE 210

Query: 61  IGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGS 120
           IGSHGN+VKV+ ++ELDPEIQT V L+DAYGAEGELGIV+SEKFMEHDAYCMFDALM GS
Sbjct: 211 IGSHGNAVKVK-LNELDPEIQTTVLLTDAYGAEGELGIVISEKFMEHDAYCMFDALMSGS 269

Query: 121 QGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLR 180
            GSV++ DF++HS A GS + L PVIEAS+A+YHLLSV DSSLHSHLVELGVEPQYF LR
Sbjct: 270 HGSVAVVDFYSHSPAHGSHSGLPPVIEASAALYHLLSVVDSSLHSHLVELGVEPQYFALR 329

Query: 181 WLRVLFGREFSLGDLLIIWDEIFASDSSKV-NKDTEDDAGSGFGILSSPRGALIAAMAVS 239
           WLRVLFGREFSL +LL+IWDEIFA+D++ +  K  EDDA SGF I  SPRGALI AM+VS
Sbjct: 330 WLRVLFGREFSLENLLLIWDEIFAADNNVILEKGAEDDADSGFRIFRSPRGALIPAMSVS 389

Query: 240 MMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGV 299
           M+L++RSSLLATE+ATTCLQRLLNFP NI+L+K+I K KSLQ+LALD N+SS SPPF G+
Sbjct: 390 MILHLRSSLLATEHATTCLQRLLNFPENIDLRKLINKAKSLQSLALDTNMSSVSPPFDGI 449

Query: 300 YNQNNPMVVRG--SSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQ 357
           YN +  +VVRG  ++L S S+SP+TPLN VPDSYWE KWRDLHK EE +HD  GK   +Q
Sbjct: 450 YNHSKSLVVRGHTNALSSGSVSPKTPLNAVPDSYWEEKWRDLHKTEELKHDHLGKLKPSQ 509

Query: 358 KKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILE 417
           KKRW EKV+L LSRTES P P    +G K  +SSIRRSLLEDLS ELG + D  K    E
Sbjct: 510 KKRWTEKVRLPLSRTESAPAPVKAGSGKKDQKSSIRRSLLEDLSHELGMDGDIGKSDCHE 569

Query: 418 VSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNE 477
           VS +KD  + E E    DSVN +F C+++ER L+GN+GSEE+SS+FSDP+S +SG N++E
Sbjct: 570 VSGKKDHQTAEVEGGGPDSVNNDFTCSTEERCLSGNSGSEENSSVFSDPSSSLSGGNEHE 629

Query: 478 NDSEKSSVASNSSVDENDRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEK--SQTVRK 535
           NDSEKSSVASN SVDEND Q+  + E P LPVS  P+ +  +S +NN+   K  +    +
Sbjct: 630 NDSEKSSVASNMSVDENDDQAEALQEDPTLPVSHPPEGVSLNSGTNNEPAGKQVAGPKER 689

Query: 536 VLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSSS 595
            LSGKFQWFWKFGRN+AGEETSEKG    E     N+ SNQ NS G+SS +GSC   +SS
Sbjct: 690 KLSGKFQWFWKFGRNTAGEETSEKGSGTFEATKPVNDASNQINSIGSSSVNGSCNPYASS 749

Query: 596 KGETVDQNVMGTLKNLGQSMLEHIQVIESVLQQEHGQLGSRENFSKNVLVGKGQATAVTA 655
           KGE+VDQNVMGTL+N GQSMLEHIQ+IESV QQ+ GQ+GS ENFSK  LVGKGQ TA+TA
Sbjct: 750 KGESVDQNVMGTLRNFGQSMLEHIQIIESVFQQDRGQVGSLENFSKTALVGKGQVTAMTA 809

Query: 656 LKELRKISNLLSEM 669
           LKELRKISNLLSEM
Sbjct: 810 LKELRKISNLLSEM 823

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255573773\|ref\|XP_002527807.1\| conserved hypothetical protein [Ricinus communis] gi\|223532803\|gb\|EEF34579.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224090523\|ref\|XP_002309012.1\| predicted protein [Populus trichocarpa] gi\|222854988\|gb\|EEE92535.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225470672\|ref\|XP_002269494.1\| PREDICTED: uncharacterized protein LOC100250355 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449461172\|ref\|XP_004148316.1\| PREDICTED: uncharacterized protein LOC101219111 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449510567\|ref\|XP_004163702.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101219111 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224144337\|ref\|XP_002325266.1\| predicted protein [Populus trichocarpa] gi\|222866700\|gb\|EEF03831.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|283099385\|gb\|ADB08056.1\| microtubule-associated protein [Nicotiana benthamiana]	Back alignment and taxonomy information

>gi\|357449575\|ref\|XP_003595064.1\| TBC1 domain family member-like protein [Medicago truncatula] gi\|355484112\|gb\|AES65315.1\| TBC1 domain family member-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356564825\|ref\|XP_003550648.1\| PREDICTED: uncharacterized protein LOC100818700 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		669
TAIR\|locus:2123859		828	AT4G29950 [Arabidopsis thalian	0.971	0.785	0.497	1.1e-149
TAIR\|locus:2047600		840	AT2G19240 [Arabidopsis thalian	0.672	0.535	0.537	3e-144
TAIR\|locus:2165625		737	AT5G57210 [Arabidopsis thalian	0.645	0.586	0.557	6.4e-125
UNIPROTKB\|F1LXN2		771	Tbc1d5 "Protein Tbc1d5" [Rattu	0.180	0.156	0.352	5.1e-19
RGD\|1561626		805	Tbc1d5 "TBC1 domain family, me	0.180	0.150	0.352	5.6e-19
UNIPROTKB\|E1BRI4		788	TBC1D5 "Uncharacterized protei	0.194	0.164	0.349	4.3e-18
MGI\|MGI:1919488		815	Tbc1d5 "TBC1 domain family, me	0.183	0.150	0.359	1.1e-17
UNIPROTKB\|F1N3C5		804	TBC1D5 "Uncharacterized protei	0.180	0.150	0.345	6.7e-17
UNIPROTKB\|Q92609		795	TBC1D5 "TBC1 domain family mem	0.186	0.157	0.349	7.7e-16
UNIPROTKB\|F1RS74		807	TBC1D5 "Uncharacterized protei	0.186	0.154	0.349	1.1e-15

TAIR\|locus:2123859 AT4G29950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
 Identities = 349/701 (49%), Positives = 438/701 (62%)

Query:     1 MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFL-DSMED 59
             MHELLAPLLYVLHVDV+RLS+VR  +EDHF D+FDGLSF E D+TYNF+FKKFL D  +D
Sbjct:   147 MHELLAPLLYVLHVDVDRLSEVRKSYEDHFIDRFDGLSFEERDITYNFEFKKFLEDFTDD 206

Query:    60 EIGS-HGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMV 118
             EIG   GNS K++S+DELDPEIQ+IV+LSDAYGAEGELGIVLSEKFMEHDAYCMFDALM 
Sbjct:   207 EIGGIQGNSKKIKSLDELDPEIQSIVRLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMN 266

Query:   119 GSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFG 178
             G  G V+MA FFA+S A GS T L PV+EAS+A YHLLS  DSSLHSHLVELGVEPQYFG
Sbjct:   267 GVHGCVAMAGFFAYSPASGSHTGLPPVLEASTAFYHLLSFVDSSLHSHLVELGVEPQYFG 326

Query:   179 LRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAV 238
             LRWLRVLFGREF L DLLI+WDEIF++D++    D +++    + I  SPRGALI+ MAV
Sbjct:   327 LRWLRVLFGREFLLQDLLIVWDEIFSADNT-TRTDADNNTNQSYKIFDSPRGALISGMAV 385

Query:   239 SMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKXXXXXXXXXXXXXXXPPFSG 298
             SM+L +RSSLLATENA +CLQRLLNFP  I+++KII K K                  + 
Sbjct:   386 SMILCLRSSLLATENAASCLQRLLNFPEKIDVRKIIEKAKSLQTLALDDDVRSSALSIND 445

Query:   299 VYNQN-NPMV-VRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKA-EEQRHDSSGKQNQ 355
              ++Q+ +P V  R +S PS S SP++PL + P SYWE +WR LHKA EE++   S  Q  
Sbjct:   446 GFDQSISPAVPARTNSFPSGSTSPKSPLIITPQSYWEDQWRVLHKAAEEEKKSPSPIQ-- 503

Query:   356 TQKKRWLEKVKLRLSRTESDPTPRTVD-NGTKHSR-SSIRRSLLEDLSKELGFEEDSEKD 413
              +KK W  +VK RL R ES+PT      NG    + SS+ R+LLED +++L   E  E +
Sbjct:   504 -KKKPWF-RVK-RLFRAESEPTHSAKSPNGKSEVKISSVARNLLEDFNRQL-VSEPVEAN 559

Query:   414 GILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGA 473
              I  V+ E      ++ ++  + +N +F   ++E  +      E SS +FSDP SP+  +
Sbjct:   560 PIDVVNNE------DSSIRETEDINTDFETAAEESIVM----EENSSDLFSDPNSPLRDS 609

Query:   474 NDNEXXXXXXXXXXXXXXXXXXRQSHTMPESPPLPVSQTP--DDIVKDSQSNNDSLEKSQ 531
             N  E                   +  ++ +SP L +S  P  + IV  S+    S+  S 
Sbjct:   610 NYIENDSDSSNESNLFPDETVKDRETSVVDSP-LSISSQPSMEFIVSLSKDQETSVVDSP 668

Query:   532 T-VRKVLSGKFQWFWKFGRNSAGEET----SEKGGV----------------ATETKISA 570
               V    S +F        ++A +++     E+  V                A ET+ + 
Sbjct:   669 LPVSSQPSIEFPVTQSNDEDNAADKSVANIKERSKVLPGKFQWFWKFGRNVTAEETRCNG 728

Query:   571 NNESNQSNSKGAXXXXXXXXXXXXXKGETVDQNVMGTLKNLGQSMLEHIQVIESVLQQEH 630
                S       +             KG+T DQNVM TLKNLG SMLEHIQVIESV QQE 
Sbjct:   729 VESSKSDLVCSSESHSLPQASSSGSKGDT-DQNVMNTLKNLGNSMLEHIQVIESVFQQER 787

Query:   631 GQL--GSRENFSKNVLVGKGQATAVTALKELRKISNLLSEM 669
             GQ+  G  EN SKN LV KGQ TA+TALKELRKISNLL EM
Sbjct:   788 GQVQAGLIENLSKNNLVEKGQVTAMTALKELRKISNLLLEM 828

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

TAIR\|locus:2047600 AT2G19240 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165625 AT5G57210 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LXN2 Tbc1d5 "Protein Tbc1d5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1561626 Tbc1d5 "TBC1 domain family, member 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BRI4 TBC1D5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1919488 Tbc1d5 "TBC1 domain family, member 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N3C5 TBC1D5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92609 TBC1D5 "TBC1 domain family member 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RS74 TBC1D5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VI000579	hypothetical protein (804 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		669
smart00164		216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	1e-14
pfam00566		206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	8e-13
COG5210		496	COG5210, COG5210, GTPase-activating protein [Gener	3e-05

>gnl\|CDD\|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 106 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHS 165
           E DA+     LM          +F+      G    LL        +  L+   D  L+ 
Sbjct: 109 EEDAFWCLVKLM-----ERYGPNFYLPDM-SGLQLDLL-------QLDRLVKEYDPDLYK 155

Query: 166 HLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFA 204
           HL +LG+ P  + LRW   LF RE  L  +L IWD +FA
Sbjct: 156 HLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFA 194

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl\|CDD\|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	Back alignment and domain information

>gnl\|CDD\|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		669
KOG1091		625	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG4567		370	consensus GTPase-activating protein [General funct	99.97
KOG1092		484	consensus Ypt/Rab-specific GTPase-activating prote	99.93
KOG1093		725	consensus Predicted protein kinase (contains TBC a	99.77
PF00566		214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.72
COG5210		496	GTPase-activating protein [General function predic	99.71
KOG2058		436	consensus Ypt/Rab GTPase activating protein [Intra	99.71
smart00164		199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	99.69
KOG2223		586	consensus Uncharacterized conserved protein, conta	99.61
KOG2224		781	consensus Uncharacterized conserved protein, conta	99.53
KOG2197		488	consensus Ypt/Rab-specific GTPase-activating prote	99.52
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.52
KOG2222		848	consensus Uncharacterized conserved protein, conta	99.27
KOG1102		397	consensus Rab6 GTPase activator GAPCenA and relate	99.16
KOG3636		669	consensus Uncharacterized conserved protein, conta	99.15
KOG4347		671	consensus GTPase-activating protein VRP [General f	99.02
KOG2595		395	consensus Predicted GTPase activator protein [Sign	98.98
KOG2221		267	consensus PDZ-domain interacting protein EPI64, co	98.1
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	97.44
PF14961		1296	BROMI: Broad-minded protein	93.8
KOG2801		559	consensus Probable Rab-GAPs [Intracellular traffic	85.2

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=7e-80  Score=668.38  Aligned_cols=464  Identities=49%  Similarity=0.734  Sum_probs=391.3

Q ss_pred             CcchhhhHHHHHhHhHHHHHHhhhhhhhcccccCCCCCccCCcccccccchhhhccccccccccCCccccccCCcCCHHH
Q 005921            1 MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEI   80 (669)
Q Consensus         1 mhellapllyvl~~d~~~l~~v~~~ye~~~~~~fdg~~f~~~~~~~~~~~~~~~~~~~d~~~~~g~~~k~~sldeldp~~   80 (669)
                      ||||||||+||||+|.+.|.|+++.       .||.++|+|.+++|+|+|.|+.+-                    .+++
T Consensus       152 MHElLAPl~fVl~~D~q~l~h~se~-------~~~~l~f~E~d~iy~~~y~k~d~d--------------------n~~l  204 (625)
T KOG1091|consen  152 MHELLAPLLFVLHVDNQALLHVSES-------LFDKLGFEERDVIYNFLYLKTDLD--------------------NTEL  204 (625)
T ss_pred             hhhhhhhhhhheehhHHHHHHHHHh-------hhhhcCcchhhhhhhHHHHhhhcc--------------------chhH
Confidence            9999999999999999999999998       899999999999999999988521                    3889


Q ss_pred             HHHHHHhhhhccchhHHHhhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhc
Q 005921           81 QTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVAD  160 (669)
Q Consensus        81 q~lv~L~~AYg~e~elg~VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~D  160 (669)
                      +..|.+.++||++.+.++++...++|+|||++|..+|..                      ++++++++..++++|..+|
T Consensus       205 qs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~----------------------l~~v~e~~~~~~~lL~~~D  262 (625)
T KOG1091|consen  205 QSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPG----------------------LPPVFEANFAQYHLLAKVD  262 (625)
T ss_pred             HHHHHhhhccccccCcceecCcccCCcCcccchhhhccc----------------------chhHHHHhhhhhhhhhhcc
Confidence            999999999999999999999999999999999999963                      4567888888999999999


Q ss_pred             HHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHH-HHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHH
Q 005921          161 SSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWD-EIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVS  239 (669)
Q Consensus       161 PeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD-~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIlyIaVA  239 (669)
                      +.||.||.++||+|++|++||+|+||+|||||.++|.||| ++|.+.                     |++.|+.||+||
T Consensus       263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~---------------------pr~~Lv~~m~Vs  321 (625)
T KOG1091|consen  263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDS---------------------PRGILVACMFVS  321 (625)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccC---------------------chHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 666654                     567899999999


Q ss_pred             HHHHhhhhhccCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCCCCeeeeccCCCCCCCC
Q 005921          240 MMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESIS  319 (669)
Q Consensus       240 MLl~lR~qLL~~Df~se~LqlLqn~P~~iDV~kLI~~A~~L~~~~lda~~ssps~~~~~~~~~~~s~~~R~~~~~~~~~s  319 (669)
                      ||+++|+.||..++ ..||++|+|||.++|++++|++|+.|+.                +|.++...++|.+++   +.+
T Consensus       322 mLL~IRd~Llss~~-~tcL~~Lm~yP~~~Dv~~~iekAl~l~~----------------~~~K~n~~p~~~~~n---sf~  381 (625)
T KOG1091|consen  322 MLLYIRDSLLSSEY-QTCLQYLMNYPEIIDVDKFIEKALHLQK----------------LFPKSNAKPARDNSN---SFS  381 (625)
T ss_pred             HHHHHHHHHHHhcc-hhHHHHHhcCCCcCcHHHHHHHHHHHHH----------------hcccccccccCCCcc---ccc
Confidence            99999999999998 6799999999999999999999999998                566666668898876   677


Q ss_pred             CCCCCCCCCCCchhhHHHHhhHHHHhhhccCCCCchhh-hhhhhhhhhccccccccCCCCcccCCCcccCC-cchhhhhH
Q 005921          320 PRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQ-KKRWLEKVKLRLSRTESDPTPRTVDNGTKHSR-SSIRRSLL  397 (669)
Q Consensus       320 p~~p~~~~~~syweek~r~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~s~~~~~~~~~~~~~~~-~~~~~~~~  397 (669)
                      +.+|+...|.+||+.|||+++++.+++......+.++. |+.|+. +|+  .|+++|||+     |+...| ++++|.++
T Consensus       382 ~~s~~~isp~~~w~~k~r~~~~~nse~~~~~~sps~~~k~~~~~~-~~~--~r~~~D~S~-----~~~~~k~~~~~R~~~  453 (625)
T KOG1091|consen  382 DLSPVGISPCSYWEGKWRVLPRANSEESSMKISPSPIIKKKPVLQ-MKL--ARLTIDPSR-----GSSEAKLSSSPRVLL  453 (625)
T ss_pred             ccccccCChhhhcccccCCCccccccccccccCCCcccccCcHHH-HHH--HHhhcCCcc-----ccccccCCcchhhhh
Confidence            88899999999999999999999988876555444444 899997 454  499999999     665555 88999999


Q ss_pred             HHHHhhhCCcccccccCccccccccCCCchhhhhhhccccccccccCCCcccccCCCCCCCCcccccCCCCCCCCCCCCC
Q 005921          398 EDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNE  477 (669)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  477 (669)
                      +++.++|+.                                                           |.+|...+|   
T Consensus       454 ~~~~~~l~t-----------------------------------------------------------p~~~d~~~~---  471 (625)
T KOG1091|consen  454 LDLKEQLST-----------------------------------------------------------PLSPDEDAN---  471 (625)
T ss_pred             cccccccCC-----------------------------------------------------------CCCcchhhh---
Confidence            998888651                                                           233322222   


Q ss_pred             CccccccccC-CCCccccccCCCCCCC---CCCCCCCCCCCCCccCCCCCcccccccchhhcccccCceeeeecCCCCcc
Q 005921          478 NDSEKSSVAS-NSSVDENDRQSHTMPE---SPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAG  553 (669)
Q Consensus       478 ~~s~~~s~~s-~~~~~~~~~~~~~~~~---~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~q~~~k~~r~~~~  553 (669)
                         +.+.|.+ +.|.-..|..++++..   +.|++|+.+++++          ....+-++|+|+|+|||+||+|||..+
T Consensus       472 ---~~s~v~~~q~s~lq~~l~~kd~~~~~~~~~l~i~~~~~~~----------~~~~~~~~k~~~~~~q~~~~l~~~l~~  538 (625)
T KOG1091|consen  472 ---EASTVSSIQPSKLQEDLSTKDQVTSQVNGPLEISRTLDGK----------SVLITKEDKLLSGLFQRLRKLGRTLSA  538 (625)
T ss_pred             ---hhhhhhhcchHHHHhhhcccchhhhhcCCcccccccCCcc----------hhhhHHHHHhhhHHHHHHHHhCchhcc
Confidence               2333333 6677777777766554   7999999887661          111233889999999999999999988


Q ss_pred             ccccccCCcccccccccccccccCCCCCCCCCCCCCCCCCC-CCCcccchhHHHHHHhhhHHHHHHHHHHHHHhhcccCC
Q 005921          554 EETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSS-SKGETVDQNVMGTLKNLGQSMLEHIQVIESVLQQEHGQ  632 (669)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~tl~~~g~smle~i~vie~~fq~~~~~  632 (669)
                      |||++.                          +-.|++..+ .+++..|++.+.|++|+||+|++||++||+||||.+++
T Consensus       539 ~etk~~--------------------------~~~~s~~~~~~~s~~~~~~~~~~~~~~gq~~~~h~~~~~~~~~~~p~~  592 (625)
T KOG1091|consen  539 EETKKL--------------------------NTGCSPPKHASSSGDTDQGSATTLKNLGQSMLEHIEMIESVFEQEPIE  592 (625)
T ss_pred             cccccC--------------------------CCCCCCCCcccccCCcccccccccccCchhHHHHHHHHHHhhccCccc
Confidence            888222                          122333322 23347789999999999999999999999999999986


Q ss_pred             CC--cccccccccccccchhhHHHHHHHHHHHh
Q 005921          633 LG--SRENFSKNVLVGKGQATAVTALKELRKIS  663 (669)
Q Consensus       633 ~~--~~~~~~~~~~~~~~q~~a~~al~elrkis  663 (669)
                      +.  ..+|+++|++|++||+||+.||+||||+|
T Consensus       593 ~~~~~~d~l~~~~~~~~g~~ta~~~~~~~~~~~  625 (625)
T KOG1091|consen  593 VPAGLSDNLSGNNLVENGQPTAEPALRELRKSS  625 (625)
T ss_pred             ccccccCCCCccchhhcCCCCCchhHHhhhccC
Confidence            65  56999999999999999999999999986

>KOG4567 consensus GTPase-activating protein [General function prediction only]	Back alignment and domain information

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]	Back alignment and domain information

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []	Back alignment and domain information

>COG5210 GTPase-activating protein [General function prediction only]	Back alignment and domain information

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]	Back alignment and domain information

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]	Back alignment and domain information

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]	Back alignment and domain information

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>PF14961 BROMI: Broad-minded protein	Back alignment and domain information

>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		669
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	1e-22
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	1e-21
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	6e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2qq8_A		334	TBC1 domain family member 14; structural genomics	2e-07
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	5e-07
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	5e-07

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396	Back alignment and structure

 Score = 99.7 bits (248), Expect = 1e-22
 Identities = 31/231 (13%), Positives = 64/231 (27%), Gaps = 40/231 (17%)

Query: 103 KFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSS 162
             +E D +     L+        + D + H            ++     +  L+   D+ 
Sbjct: 172 TDLEADTFWCLTKLLEQ------ITDNYIHGQP--------GILRQVKNLSQLVKRIDAD 217

Query: 163 LHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGF 222
           L++H     VE   F  RW+  L  REF +G ++ +WD   +                  
Sbjct: 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET---------------- 261

Query: 223 GILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQA 282
                 +    +    S  +    +        + +    +F         +    +++ 
Sbjct: 262 -----SQEVTSSYSMSSNDIKPPVTPT-EPRVASFVTPTKDFQSPTTALSNMTPNNAVED 315

Query: 283 LALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPR-TPLNVVPDSYW 332
                 +  SS     V+     ++     L         T L   P   W
Sbjct: 316 ---SGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDW 363

PyMOL of 1fkm

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		669
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.95
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.94
2qq8_A		334	TBC1 domain family member 14; structural genomics	99.94
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.94
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	99.93
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.93
4hl4_A		292	TBC1 domain family member 20; rabgap, RAB1B, hydro	99.93

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*	Back alignment and structure

Probab=99.95  E-value=9.6e-28  Score=255.75  Aligned_cols=167  Identities=19%  Similarity=0.341  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHh
Q 005921          106 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL  185 (669)
Q Consensus       106 EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlL  185 (669)
                      |+||||||++||..++      ++|..++     .|+   ...+..|..+|+.+||+||+||.++||+|.+|++|||+||
T Consensus       175 E~daF~~f~~lm~~~~------~~f~~~~-----~~i---~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~L  240 (396)
T 1fkm_A          175 EADTFWCLTKLLEQIT------DNYIHGQ-----PGI---LRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL  240 (396)
T ss_dssp             HHHHHHHHHHHHGGGG------GGSSTTC-----HHH---HHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH------HHHhhcH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            9999999999999764      7887653     243   3455789999999999999999999999999999999999


Q ss_pred             hcccCChhHHHHHHHHHhhcCCC-----CCCCCC-CC-------CCCCCc---------------------------ccc
Q 005921          186 FGREFSLGDLLIIWDEIFASDSS-----KVNKDT-ED-------DAGSGF---------------------------GIL  225 (669)
Q Consensus       186 FsREFpLedVLRIWD~IFAeg~s-----i~~k~~-e~-------~~es~F---------------------------rIl  225 (669)
                      |+|+||++.++||||.||++|..     ..+... .+       ++...|                           .+.
T Consensus       241 F~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (396)
T 1fkm_A          241 LMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMR  320 (396)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred             HHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcc
Confidence            99999999999999999998810     000000 00       000000                           000


Q ss_pred             CCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHhhc
Q 005921          226 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN----INLKKIIGKTKSLQALALDA  287 (669)
Q Consensus       226 ~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~----iDV~kLI~~A~~L~~~~lda  287 (669)
                      .++...|++|||+|||+.+|++||++|| +++|++|+++|..    .|++.||..|..++..+.++
T Consensus       321 ~~~~~~~~~~v~~AlL~~~r~~Ll~~df-~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~  385 (396)
T 1fkm_A          321 QSSLNEFHVFVCAAFLIKWSDQLMEMDF-QETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDA  385 (396)
T ss_dssp             --CHHHHHHHHHHHHHHHTHHHHTTCCH-HHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhcc
Confidence            0122479999999999999999999997 8999999999974    58999999999999887544

PyMOL of 1fkm

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}	Back alignment and structure

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		669
d1fkma2		188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	1e-14

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188	Back information, alignment and structure


class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (171), Expect = 1e-14
 Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 45/178 (25%)

Query: 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSK 209
             +  L+   D+ L++H     VE   F  RW+  L  REF +G ++ +WD   +  S +
Sbjct: 10  KNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQE 69

Query: 210 V----------------------------------------NKDTEDDAGSGFGILSSPR 229
           V                                        N    +       +  S  
Sbjct: 70  VTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSL 129

Query: 230 GALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV----NINLKKIIGKTKSLQAL 283
                 +  + ++     L+  +     +  L N P       +++ ++ +    Q+L
Sbjct: 130 NEFHVFVCAAFLIKWSDQLMEMDF-QETITFLQNPPTKDWTETDIEMLLSEAFIWQSL 186

PyMOL of d1fkma2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		669
d1fkma2		188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.89
d1fkma1		194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	96.46

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3e-23  Score=197.99  Aligned_cols=141  Identities=19%  Similarity=0.359  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCC---------
Q 005921          142 LLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNK---------  212 (669)
Q Consensus       142 I~plIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k---------  212 (669)
                      .|++..++..|..+|+.+||+||+||++.|+++.+|++|||+|||+|+||+++++||||.||+++....-.         
T Consensus         2 qpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~~   81 (188)
T d1fkma2           2 QPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDI   81 (188)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC--------------
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhhh
Confidence            34445667889999999999999999999999999999999999999999999999999999986531000         


Q ss_pred             ------CCCC-------------------C-------CCCCccccCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHH
Q 005921          213 ------DTED-------------------D-------AGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQR  260 (669)
Q Consensus       213 ------~~e~-------------------~-------~es~FrIl~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~Lql  260 (669)
                            ..+.                   +       .+.. ........+|++|+|+|||+..|++|++.|| +++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~c~A~L~~~r~~Ll~~df-~~~l~~  159 (188)
T d1fkma2          82 KPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSG-KMRQSSLNEFHVFVCAAFLIKWSDQLMEMDF-QETITF  159 (188)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHHHHHHTHHHHTTCCH-HHHHHH
T ss_pred             ccccccccccchhhhhhccccccccccccccchhhhhhccc-ccccccchHHHHHHHHHHHHHHHHHHHHccH-HHHHHH
Confidence                  0000                   0       0000 0002345689999999999999999999987 999999


Q ss_pred             HhCCCCC----CCHHHHHHHHHHHHHHH
Q 005921          261 LLNFPVN----INLKKIIGKTKSLQALA  284 (669)
Q Consensus       261 Lqn~P~~----iDV~kLI~~A~~L~~~~  284 (669)
                      ||++|+.    .|++.|+.+|..++..+
T Consensus       160 Lq~~P~~~~~~~di~~ll~~A~~~~~~~  187 (188)
T d1fkma2         160 LQNPPTKDWTETDIEMLLSEAFIWQSLY  187 (188)
T ss_dssp             HTSCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCcccHHHHHHHHHHHHHHh
Confidence            9999974    59999999998888753

PyMOL of d1fkma2

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure