Citrus Sinensis ID: 005927

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------67
MDHSNSGKEALEGIGNDGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDASGNIRQRDFVCSKEGFPVDEDLCAVKRCNRLETRTGCKVLMRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
ccccccccccccccccccccccccEEccHHHHHHHHHHHccccccEEEEccEEEcccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEccEEEEEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccHHHHHcccEEEEcccccccccccccccEEEEEcccccHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEEEccEEEEEEEEEccccEEEEEEcccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
cccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEcEEEccccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEcccccccccHHHHHcccccccccHHHcccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEcEEccccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEccccEEEEEEEcccccEEEEEEHHEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccc
mdhsnsgkealegigndgelkvgtevksDAEAYNLCNNYAFrkgfslrkghvrrdasgnirqrdfvcskegfpvdedlcavkrcnrletrtgcKVLMRFTVSNGVWVISHINFehnhelakpeERQFLRSCRKIFeasggvdvgrrrtkplsylgndfggdrnvQFAKKDmgnylpremgnmmepgdvqGLLNYFrrkkcedpsfFYAVQVNQLNQATNFfwrdgrskldydcfgdvvsfdatfrlnkynlicapfvgvnhhwkNMLFGCAFLLDESTHSYVWLFESFLesmgntqpktiftNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCfyechdetefQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLvfnsdtfsanidsvqrsdsidTVFHQVSTKRMDVISFVQHFEEKTKEMHLdeleddhfckhvvPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHalkafdfnnltqipVQYILKRWTKEAKKGIVVRVsnerhglssntvKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHakkvdsspslnaisDIWTMASLSQV
mdhsnsgkealegigndgelkVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVrrdasgnirqrdfvcskegfpvdedlcavkrcnrletrtgckvlmrFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIfeasggvdvgrrrtkplsylgndfggdrnvqfAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSanidsvqrsdsIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALkafdfnnltqIPVQYILKRWTKEAKKGIVVrvsnerhglssntvkSVQSLRLSELMHMGSNVYSiaslsdsgTKIVKEKLAEAMELLEKDEEIVNRLAhakkvdsspslnaisdiwtmaslsqv
MDHSNSGKEALEGIGNDGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDASGNIRQRDFVCSKEGFPVDEDLCAVKRCNRLETRTGCKVLMRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVkeklaeamellekdeeIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
****************************DAEAYNLCNNYAFRKGFSLRKGHVRRDASGNIRQRDFVCSKEGFPVDEDLCAVKRCNRLETRTGCKVLMRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYL**********GDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSN********************LMHMGSNVYSIAS*******I***************************************IW********
******************ELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDASGNIRQRDFVCSKE********************TGCKVLMRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIV****************SVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAM****************************************
**********LEGIGNDGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDASGNIRQRDFVCSKEGFPVDEDLCAVKRCNRLETRTGCKVLMRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
**************GNDGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDASGNIRQRDFVCSKE********************TGCKVLMRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEA*G***VGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKK***************NTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVN********************WT**SL***
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MDHSNSGKEALEGIGNDGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDASGNIRQRDFVCSKEGFPVDEDLCAVKRCNRLETRTGCKVLMRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query669 2.2.26 [Sep-21-2011]
Q9SZL8788 Protein FAR1-RELATED SEQU yes no 0.901 0.765 0.338 9e-90
Q9SWG3 827 Protein FAR-RED IMPAIRED no no 0.834 0.674 0.297 4e-72
Q9ZVC9 851 Protein FAR1-RELATED SEQU no no 0.862 0.678 0.298 2e-71
Q9LIE5 839 Protein FAR-RED ELONGATED no no 0.850 0.678 0.292 3e-70
Q9M8J3764 Protein FAR1-RELATED SEQU no no 0.799 0.700 0.289 2e-68
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.826 0.701 0.291 2e-66
Q6NQJ7732 Protein FAR1-RELATED SEQU no no 0.880 0.804 0.292 4e-66
Q9SSQ4703 Protein FAR1-RELATED SEQU no no 0.807 0.768 0.289 3e-60
Q9SZL7545 Protein FAR1-RELATED SEQU no no 0.566 0.695 0.305 2e-59
Q9S793725 Protein FAR1-RELATED SEQU no no 0.813 0.750 0.255 9e-52
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function desciption
 Score =  331 bits (849), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 213/629 (33%), Positives = 331/629 (52%), Gaps = 26/629 (4%)

Query: 17  DGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDA-SGNIRQRDFVCSKEGFP-V 74
           D E   G E +S+  A    N+YA R GFS R    RR    G I QR FVC+KEGF  +
Sbjct: 70  DLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNM 129

Query: 75  DEDLCAVKRCNRLET--RTGCKVLMRFTVSN-GVWVISHINFEHNHELAKPEERQFLRSC 131
           +E     +   R  T  R GCK  +   + + G W++S    +HNHEL  P++   LRS 
Sbjct: 130 NEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSH 189

Query: 132 RKI----------FEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGN 181
           R+I           +A+G   +G RR   +S L  ++GG   V F + D  NY+      
Sbjct: 190 RQISGPAKTLIDTLQAAG---MGPRRI--MSALIKEYGGISKVGFTEVDCRNYMRNNRQK 244

Query: 182 MMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFD 241
            +E G++Q LL+Y R+   ++P+FFY+VQ ++     N FW D ++ +D+  FGD V+FD
Sbjct: 245 SIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFD 303

Query: 242 ATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIF 301
            T+R N+Y L  APF GVNHH + +LFGCAF+++E+  S+VWLF ++L +M    P +I 
Sbjct: 304 TTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSIT 363

Query: 302 TNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQF-ANLEFMKYLNKCFYECHDET 360
           T+ +  +  AI  VF   RHR    HI+K  +  L++ F  +  F    +KC        
Sbjct: 364 TDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVE 423

Query: 361 EFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQV 420
           +F+  W  +++K+ L DH WL+ +YS R +W  V+  DTF A++    RSDSI++ F   
Sbjct: 424 DFERCWFSLLDKYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGY 483

Query: 421 STKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNF 480
                ++  F + +E+  +     E++ D+   +  P L+  + +   A  +YT K+F  
Sbjct: 484 INASTNLSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASELYTRKLFMR 543

Query: 481 FEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQ-QKVCKINYNLSTQDISCSCKLFERMGI 539
           F+ EL+G +     +   DG++  Y+  + G+  K   + +N+     +CSC++FE  GI
Sbjct: 544 FQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGI 603

Query: 540 LCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSE 599
           +CRH L  F   NL  +P  YILKRWT+ AK  ++    N  H   +N ++S  ++R + 
Sbjct: 604 ICRHILAVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYN-LHAY-ANYLES-HTVRYNT 660

Query: 600 LMHMGSNVYSIASLSDSGTKIVKEKLAEA 628
           L H  SN    A  S     +    L EA
Sbjct: 661 LRHKASNFVQEAGKSLYTCDVAVVALQEA 689
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2 Back     alignment and function description
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query669
218197656 819 hypothetical protein OsI_21811 [Oryza sa 0.823 0.672 0.418 1e-121
115466626 780 Os06g0166100 [Oryza sativa Japonica Grou 0.823 0.706 0.418 1e-121
222635024 792 hypothetical protein OsJ_20251 [Oryza sa 0.823 0.695 0.418 1e-121
357149440696 PREDICTED: protein FAR1-RELATED SEQUENCE 0.819 0.787 0.404 1e-120
242050362 781 hypothetical protein SORBIDRAFT_02g03456 0.835 0.715 0.407 1e-119
326498635 777 predicted protein [Hordeum vulgare subsp 0.837 0.720 0.407 1e-118
414886879 779 TPA: FAR1-domain family sequence isoform 0.822 0.706 0.404 1e-117
357118619761 PREDICTED: protein FAR1-RELATED SEQUENCE 0.849 0.746 0.408 1e-117
414886878690 TPA: FAR1-domain family sequence [Zea ma 0.822 0.797 0.404 1e-117
326487428 773 predicted protein [Hordeum vulgare subsp 0.811 0.702 0.417 1e-116
>gi|218197656|gb|EEC80083.1| hypothetical protein OsI_21811 [Oryza sativa Indica Group] Back     alignment and taxonomy information
 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/561 (41%), Positives = 332/561 (59%), Gaps = 10/561 (1%)

Query: 22  VGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRR-DASGNIRQRDFVCSKEGFPVDEDLCA 80
           +G  V S+ EAY L  +Y  R GFS+RKG       + NIR +D+ CSKEG   DE +  
Sbjct: 41  LGCVVHSEEEAYKLYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVTE 100

Query: 81  VKRCNRLETRTGCKVLMRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASG 139
               NR +TRT CK ++RF V   G W +      HNH+LAKP ER  LRS + +     
Sbjct: 101 AN-FNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLAKPGERHMLRSAKSLAVGKS 159

Query: 140 GVDVGRRRTK--PLSYLGNDFGGD--RNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYF 195
           GV   +  T+  P++   +  G D      +  +D  N++  +   ++E GD Q L+NYF
Sbjct: 160 GVIDPQASTESHPINGFSHMIGSDIVEPPGYTIRDCYNHVSMQGITIIEAGDSQSLVNYF 219

Query: 196 RRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAP 255
           +R+  E+  F++ VQV+Q  + TNFF+RD +S+ D+DCFGD V FD TFR NKY+L+CAP
Sbjct: 220 KRRTNEEGMFYWDVQVDQEGRMTNFFFRDAKSRNDFDCFGDAVIFDTTFRTNKYSLVCAP 279

Query: 256 FVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETV 315
           FVGVNHHW+N++FGCAFLLDES+ SYVWLF+SFLESMG   PK+IFT++++A+++A+E V
Sbjct: 280 FVGVNHHWQNIVFGCAFLLDESSASYVWLFKSFLESMGGRSPKSIFTDQDDAITQAVELV 339

Query: 316 FMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSL 375
           F  T+H  S  HI+K+A+ +L     +  F     KC    + ETE + SW  M+N++ L
Sbjct: 340 FPNTQHCFSYWHILKNAQSHLGTVNTSQTFQNMFIKCMQGPNSETELEESWATMLNEYKL 399

Query: 376 GDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFE 435
            ++ WL  LY  R+KWC  FN DTF   I+S Q  +  +  F  +S +   +  F    E
Sbjct: 400 QENSWLSDLYRSRNKWCSAFNKDTFDGGINSSQWGEVSNNTFTGISDESTPLTRFALLLE 459

Query: 436 EKTKEMHLDELEDDHFCKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRM 493
           +  K +  +E E+D  C    P R    + +L  A   YT KI+  FE E L GC     
Sbjct: 460 KVFKGLRRNESEEDFRCSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGATSC 519

Query: 494 KEVCKDGEVCIYEAIEEGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNN 552
            E    G +  +E   +G+  KV  +  + ST +ISC C+ FERMG+LC HALKAF   N
Sbjct: 520 HESSCGGNLLRFEITMQGRGSKVWTVLLDTSTMEISCGCRKFERMGLLCSHALKAFSLQN 579

Query: 553 LTQIPVQYILKRWTKEAKKGI 573
           +  IP +YI KRWTK+A++ +
Sbjct: 580 MDTIPEKYISKRWTKDARRSM 600

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|115466626|ref|NP_001056912.1| Os06g0166100 [Oryza sativa Japonica Group] gi|55296036|dbj|BAD67598.1| putative far-red impaired response protein [Oryza sativa Japonica Group] gi|55296143|dbj|BAD67861.1| putative far-red impaired response protein [Oryza sativa Japonica Group] gi|113594952|dbj|BAF18826.1| Os06g0166100 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222635024|gb|EEE65156.1| hypothetical protein OsJ_20251 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357149440|ref|XP_003575113.1| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242050362|ref|XP_002462925.1| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor] gi|241926302|gb|EER99446.1| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|326498635|dbj|BAK02303.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|414886879|tpg|DAA62893.1| TPA: FAR1-domain family sequence isoform 1 [Zea mays] gi|414886880|tpg|DAA62894.1| TPA: FAR1-domain family sequence isoform 2 [Zea mays] Back     alignment and taxonomy information
>gi|357118619|ref|XP_003561049.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|414886878|tpg|DAA62892.1| TPA: FAR1-domain family sequence [Zea mays] Back     alignment and taxonomy information
>gi|326487428|dbj|BAJ89698.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query669
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.899 0.763 0.346 2e-88
TAIR|locus:2082420764 FRS7 "FAR1-related sequence 7" 0.645 0.565 0.297 2e-73
TAIR|locus:2129665 827 FAR1 "FAR-RED IMPAIRED RESPONS 0.852 0.689 0.302 3.2e-72
TAIR|locus:2144930788 FRS12 "FAR1-related sequence 1 0.684 0.581 0.286 7.6e-72
TAIR|locus:2090394 839 FHY3 "far-red elongated hypoco 0.705 0.562 0.3 6e-68
TAIR|locus:2014639732 FRS4 "FAR1-related sequence 4" 0.825 0.754 0.299 9.2e-68
TAIR|locus:2059304 851 FRS3 "FAR1-related sequence 3" 0.798 0.627 0.310 1.3e-66
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.807 0.768 0.294 4.3e-61
TAIR|locus:2062606 807 FRS2 "FAR1-related sequence 2" 0.635 0.526 0.296 3.3e-57
TAIR|locus:2121003545 FRS9 "FAR1-related sequence 9" 0.635 0.779 0.290 1.1e-55
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 216/624 (34%), Positives = 334/624 (53%)

Query:     5 NSGKEALEGIGNDGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRDA-SGNIRQR 63
             N  +EA + +  D E   G E +S+  A    N+YA R GFS R    RR    G I QR
Sbjct:    60 NQEEEACDLL--DLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQR 117

Query:    64 DFVCSKEGFP-VDEDLCA---VKRCNRLETRTGCKVLMRFTVSN-GVWVISHINFEHNHE 118
              FVC+KEGF  ++E       +KR  R  TR GCK  +   + + G W++S    +HNHE
Sbjct:   118 QFVCAKEGFRNMNEKRTKDREIKR-PRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHE 176

Query:   119 LAKPEERQFLRSCRKIF-EASGGVDV----GRRRTKPLSYLGNDFGGDRNVQFAKKDMGN 173
             L  P++   LRS R+I   A   +D     G    + +S L  ++GG   V F + D  N
Sbjct:   177 LVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRN 236

Query:   174 YLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDC 233
             Y+       +E G++Q LL+Y R+   ++P+FFY+VQ ++     N FW D ++ +D+  
Sbjct:   237 YMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTH 295

Query:   234 FGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMG 293
             FGD V+FD T+R N+Y L  APF GVNHH + +LFGCAF+++E+  S+VWLF ++L +M 
Sbjct:   296 FGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMS 355

Query:   294 NTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFA-NLEFMKYLNKC 352
                P +I T+ +  +  AI  VF   RHR    HI+K  +  L++ F  +  F    +KC
Sbjct:   356 AHPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKC 415

Query:   353 FYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDS 412
                     +F+  W  +++K+ L DH WL+ +YS R +W  V+  DTF A++    RSDS
Sbjct:   416 VNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDS 475

Query:   413 IDTVFHQVSTKRMDVISFVQHFEEKTKEMHLD-ELEDDHFCKHVVPRLQVWNGILNHAVY 471
             I++ F        ++  F + +E K  E  L+ E++ D+   +  P L+  + +   A  
Sbjct:   476 INSYFDGYINASTNLSQFFKLYE-KALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASE 534

Query:   472 VYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQ-QKVCKINYNLSTQDISCS 530
             +YT K+F  F+ EL+G +     +   DG++  Y+  + G+  K   + +N+     +CS
Sbjct:   535 LYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCS 594

Query:   531 CKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVK 590
             C++FE  GI+CRH L  F   NL  +P  YILKRWT+ AK  ++    N  H  + N ++
Sbjct:   595 CQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYN-LHAYA-NYLE 652

Query:   591 SVQSLRLSELMHMGSNVYSIASLS 614
             S  ++R + L H  SN    A  S
Sbjct:   653 S-HTVRYNTLRHKASNFVQEAGKS 675
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
BRADI3G45470.1
annotation not avaliable (723 aa)
(Brachypodium distachyon)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query669
PLN03097 846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 7e-89
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 2e-23
pfam1055188 pfam10551, MULE, MULE transposase domain 4e-19
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 3e-04
pfam0443438 pfam04434, SWIM, SWIM zinc finger 3e-04
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  294 bits (755), Expect = 7e-89
 Identities = 199/631 (31%), Positives = 291/631 (46%), Gaps = 58/631 (9%)

Query: 23  GTEVKSDAEAYNLCNNYAFRKGFSLRKGHVRRD-ASGNIRQRDFVCSKEGFPVDEDLCAV 81
           G E +S  EAY+    YA   GF+    + RR   S       F CS+ G   + D    
Sbjct: 77  GMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYD---- 132

Query: 82  KRCNRLETR-----------------TGCKVLMRFTV-SNGVWVISHINFEHNHEL--AK 121
           K  NR   R                 T CK  M      +G WVI     EHNHEL  A+
Sbjct: 133 KSFNRPRARQTKQDPENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQ 192

Query: 122 PEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGN 181
               Q     RK++ A                +   F   +NV   K D  +   +    
Sbjct: 193 AVSEQ----TRKMYAA----------------MARQFAEYKNVVGLKNDSKSSFDKGRNL 232

Query: 182 MMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFD 241
            +E GD + LL++F + +  + +FFYAV + +  +  N FW D +S+ DY  F DVVSFD
Sbjct: 233 GLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFD 292

Query: 242 ATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIF 301
            T+  NKY +  A FVGVN H++ ML GCA + DES  +Y WL +++L +MG   PK I 
Sbjct: 293 TTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVII 352

Query: 302 TNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFA-NLEFMKYLNKCFYECHDET 360
           T++++AM   I  VF    H     HI+     NL      +  FM    KC Y    E 
Sbjct: 353 TDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEE 412

Query: 361 EFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQV 420
           EF   W  ++++F L +  W++ LY  R +W   +  D F A + +VQRS+SI+  F + 
Sbjct: 413 EFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKY 472

Query: 421 STKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNF 480
             K+  V  FV+ +E   ++ + +E + D    +  P L+  + +      VYT  +F  
Sbjct: 473 VHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKK 532

Query: 481 FEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGIL 540
           F++E+LG +    K   +D     +   +  + +   + +N +  ++SC C+LFE  G L
Sbjct: 533 FQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYL 592

Query: 541 CRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERH--GLSSNTVKSVQSLRLS 598
           CRHAL       L+ IP QYILKRWTK+AK          RH  G  S  V+S +  R +
Sbjct: 593 CRHALVVLQMCQLSAIPSQYILKRWTKDAK---------SRHLLGEESEQVQS-RVQRYN 642

Query: 599 ELMHMGSNVYSIASLSDSGTKIVKEKLAEAM 629
           +L      +   ASLS     I    L EA 
Sbjct: 643 DLCQRALKLSEEASLSQESYNIAFRALEEAF 673

Length = 846
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 669
PLN03097 846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.85
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.81
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.52
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 99.13
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.89
COG3328379 Transposase and inactivated derivatives [DNA repli 98.8
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.49
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 98.29
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 96.72
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 95.07
PF13610140 DDE_Tnp_IS240: DDE domain 91.57
smart0077459 WRKY DNA binding domain. The WRKY domain is a DNA 90.79
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 89.39
PF04684496 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact 87.08
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 84.95
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 84.18
PF04937153 DUF659: Protein of unknown function (DUF 659); Int 82.67
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.5e-134  Score=1135.85  Aligned_cols=612  Identities=31%  Similarity=0.521  Sum_probs=539.9

Q ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHHHHHhcCceEEeccee-ecCCCCeEEEEEEeeccCCCCCcchh------------
Q 005927           13 GIGNDGELKVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVR-RDASGNIRQRDFVCSKEGFPVDEDLC------------   79 (669)
Q Consensus        13 ~~~~~~~p~~G~~F~S~eea~~fy~~YA~~~GF~vr~~~s~-~~~~g~~~~~~f~Csr~G~~~~~~~~------------   79 (669)
                      +.++..+|.+||+|+|.|||++||+.||.+.||+||+.+++ ++.+|.+++++|+|+|+|+++.+..+            
T Consensus        67 ~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~  146 (846)
T PLN03097         67 KEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQD  146 (846)
T ss_pred             cCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccC
Confidence            44677899999999999999999999999999999999998 66788999999999999987643210            


Q ss_pred             -hhhccCCccccccccceEEEEEE-cCeEEEEEeeccCCCCCCCcccccccccccccccccCccccccCCcccceeeccc
Q 005927           80 -AVKRCNRLETRTGCKVLMRFTVS-NGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGND  157 (669)
Q Consensus        80 -~~~~r~~~~~rtgCpa~i~v~~~-~~~w~V~~~~~~HNH~l~~~~~~~~l~s~r~l~~~~~~i~~~~~~~~~~~~~~~~  157 (669)
                       ...+++|+.+||||||+|+|++. +|+|+|+.++.+|||+|.++..... + .|++                +..+...
T Consensus       147 ~~~~~~rR~~tRtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~~-~-~r~~----------------~~~~~~~  208 (846)
T PLN03097        147 PENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSE-Q-TRKM----------------YAAMARQ  208 (846)
T ss_pred             cccccccccccCCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCccccch-h-hhhh----------------HHHHHhh
Confidence             01123567799999999999998 9999999999999999987643210 0 0110                0112223


Q ss_pred             cCCCccccccccccCCcchhhhcCCCCCCChhhHHHHHHhhccCCCCceEEEEeccCCceeeEEecccchHHHHhHcCCE
Q 005927          158 FGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDV  237 (669)
Q Consensus       158 ~g~~~~v~~~~~di~N~~~~~r~~~~~~~d~~~l~~~l~~~~~~np~f~~~~~~d~~~~l~~ifw~~~~~~~~~~~f~dv  237 (669)
                      .++..+++.++.|..|...+.|+..+..+|+++|++||+++|.+||+|||++++|++|+|++|||+|++++.+|.+||||
T Consensus       209 ~~~~~~v~~~~~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDv  288 (846)
T PLN03097        209 FAEYKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDV  288 (846)
T ss_pred             hhccccccccchhhcchhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCE
Confidence            34556777788888898888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecceeccccCCceeeeEEEeccCCChhhhhhhhhcCCChhHHHHHHHHHHHHhCCCCCcEEeCcccHHHHHHHHHHcc
Q 005927          238 VSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFM  317 (669)
Q Consensus       238 v~~D~Ty~~n~y~~pl~~~~gv~~~~~~~~~~~al~~~Et~es~~w~l~~f~~~~~~~~p~~iitD~~~a~~~Ai~~vfP  317 (669)
                      |+||+||+||+|+|||++|+|+|||+|+++|||||+.+|+.|+|.|||++|+++|+|+.|.+||||++.+|.+||++|||
T Consensus       289 V~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP  368 (846)
T PLN03097        289 VSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFP  368 (846)
T ss_pred             EEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccccchHHHHHHHHhhhhhc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHhhcCCCchHHHHHHHHhhcccccccc
Q 005927          318 KTRHRLSTGHIVKDARRNLANQFA-NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFN  396 (669)
Q Consensus       318 ~a~h~~C~~Hi~~n~~~~l~~~~~-~~~~~~~~~~~v~~~~~~~eFe~~w~~l~~~~~~~~~~~l~~~~~~r~~W~~~y~  396 (669)
                      +|.|++|.|||++|+.++|+.++. .+.|..+|.+||+++.+++|||..|..|+++|++++|+||+.+|+.|++|||+|+
T Consensus       369 ~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~  448 (846)
T PLN03097        369 NAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYM  448 (846)
T ss_pred             CceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHh
Confidence            999999999999999999998854 4689999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCCCCchhhhhhcccCCCCCHHHHHHHHHHHHHHhhhhhhhhcccccCcccccchhhhHHHHHHHhccHH
Q 005927          397 SDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSK  476 (669)
Q Consensus       397 ~~~f~~~~~tt~~~Es~n~~lk~~~~~~~~l~~f~~~~~~~~~~~~~~e~~~d~~s~~~~p~~~~~~~~e~q~~~~yT~~  476 (669)
                      ++.|++||+||+|+||+|++||+|++++++|..|+++|+++++.++++|+++|+.+.++.|.+++++|||+||+++||++
T Consensus       449 k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~  528 (846)
T PLN03097        449 RDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHA  528 (846)
T ss_pred             cccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccceEEEeeCCcEEEEEEEEecceeEEEEEEecCCCeEEeEeccccccCcchhhHHHHhhccccccC
Q 005927          477 IFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQI  556 (669)
Q Consensus       477 ~f~~fq~el~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~V~~~~~~~~~~CsC~~fe~~GipC~HiL~Vl~~~~v~~i  556 (669)
                      ||++||+|+..+..+.+.....++..+++.+...+..+.|.|.+|.....++|+|++||+.||||||||+||.++||.+|
T Consensus       529 iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~I  608 (846)
T PLN03097        529 VFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAI  608 (846)
T ss_pred             HHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccC
Confidence            99999999999887665555444554444433333456799999999999999999999999999999999999999999


Q ss_pred             CccccccccccccccCcccccCCcccCCCCCccccchHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHH
Q 005927          557 PVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDE  636 (669)
Q Consensus       557 P~~yil~RWtk~a~~~~~~~~~~~~~~~~~~~~~~~~~~Ry~~l~~~~~~~~~~a~~s~e~~~~~~~~l~~~~~~~~~~~  636 (669)
                      |++|||+||||+||...+.+...       + ..++.+.||+.||++++++|.+|+.|+|.|.+|+++|+++...+.   
T Consensus       609 P~~YILkRWTKdAK~~~~~~~~~-------~-~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~~~~~~---  677 (846)
T PLN03097        609 PSQYILKRWTKDAKSRHLLGEES-------E-QVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCI---  677 (846)
T ss_pred             chhhhhhhchhhhhhcccCcccc-------c-cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH---
Confidence            99999999999999876553221       1 123467899999999999999999999999999999999998885   


Q ss_pred             HHHHhhhccccCCCCCC
Q 005927          637 EIVNRLAHAKKVDSSPS  653 (669)
Q Consensus       637 ~~~~~~~~~~~~~~~~~  653 (669)
                      -+.+...+....+..+.
T Consensus       678 ~~~n~~~~~~~~~~~~~  694 (846)
T PLN03097        678 SMNNSNKSLVEAGTSPT  694 (846)
T ss_pred             HhhccCCCccccccccc
Confidence            33444444444444444

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>smart00774 WRKY DNA binding domain Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query669
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1qzv_F 154 Plant photosystem I: subunit PSAF; photosynthesis, 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 74/440 (16%), Positives = 150/440 (34%), Gaps = 96/440 (21%)

Query: 271 AFLLDESTHSYVWLFESF-LESMGNTQPKTIFTNENEAMSKAIETVFMK-TRHRLSTGHI 328
            F+ +    +Y +L      E    +    ++  + + +    + VF K    RL     
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLK 139

Query: 329 VKDARRNL-ANQFANLEFMKYLNK-------C-FYECHDETEFQVSWDDMINKFSLGDHL 379
           ++ A   L   +   ++ +    K       C  Y+   + +F++ W ++ N  S    L
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 380 -WLKKLYSLRDK-WC-LVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEE 436
             L+KL    D  W     +S      I S+Q    +  +      +   ++        
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLV-------- 249

Query: 437 KTKEMHLDELED----DHF---CKHVV-PR-LQVWNGILN----HAVYVYTSKIFNFFE- 482
                 L  +++    + F   CK ++  R  QV + +      H    + S      E 
Sbjct: 250 ------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 483 MELLG-CMGVRMKEVCKDGEVC---------IYEAIEEG--------------QQKVCKI 518
             LL   +  R +++ +  EV          I E+I +G                 + + 
Sbjct: 304 KSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 519 NYN-LSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRV 577
           + N L   +     K+F+R+ +          F     IP   +   W  +  K  V+ V
Sbjct: 362 SLNVLEPAEYR---KMFDRLSV----------FPPSAHIPTILLSLIWF-DVIKSDVMVV 407

Query: 578 SNERHGLS------SNTVKSVQSLRLSELMHMGSNVYSI-ASLSDSGTKIVKEKLAEAME 630
            N+ H  S        +  S+ S+ L   + +  N Y++  S+ D    I K   ++ + 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIVDH-YNIPKTFDSDDLI 465

Query: 631 LLEKDEEIVNRLA-HAKKVD 649
               D+   + +  H K ++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIE 485
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query669
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 94.74
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 94.68
2rpr_A87 Flywch-type zinc finger-containing protein 1; flyw 80.69
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=94.74  E-value=0.086  Score=41.18  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=25.1

Q ss_pred             cccceEEEEEE--cCeEEEEEeeccCCCCC
Q 005927           92 GCKVLMRFTVS--NGVWVISHINFEHNHEL  119 (669)
Q Consensus        92 gCpa~i~v~~~--~~~w~V~~~~~~HNH~l  119 (669)
                      ||||+=.|.+.  +....++.+..+|||++
T Consensus        44 gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           44 GCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             TCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             CCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            99999999987  66788899999999987
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query669
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 95.67
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.67  E-value=0.013  Score=43.18  Aligned_cols=55  Identities=22%  Similarity=0.366  Sum_probs=38.9

Q ss_pred             CceEEecceeecCCCCeEEEEEEeeccCCCCCcchhhhhccCCccccccccceEEEEEE--cCeEEEEEeeccCCCCC
Q 005927           44 GFSLRKGHVRRDASGNIRQRDFVCSKEGFPVDEDLCAVKRCNRLETRTGCKVLMRFTVS--NGVWVISHINFEHNHEL  119 (669)
Q Consensus        44 GF~vr~~~s~~~~~g~~~~~~f~Csr~G~~~~~~~~~~~~r~~~~~rtgCpa~i~v~~~--~~~w~V~~~~~~HNH~l  119 (669)
                      ||..|+--.+.-++...-|.+|.|+..                     ||||+=.|.+.  ++.-.++.+..+|||++
T Consensus        13 Gy~WRKYGQK~ikgs~~pRsYYrCt~~---------------------~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          13 GYRWRKYGQKVVKGNPYPRSYYKCTTP---------------------GCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             SSCBCCCEEECCTTCSSCEEEEEEECS---------------------SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CcEecccCceeccCCCCceEEEEcccc---------------------CCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            566555544422222334677888742                     99999999988  66788888999999986