Citrus Sinensis ID: 005964

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------
MFFSQGRSDGNHSNNGEHIIKFGSIIEYCNACTTQPGFSSSHAHHQPSAAGSPLPQSRPDYQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGTAENVSHVMGNEIEGIERRLRRYAAMFMSIRPHDHLE
cccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccEEEEccccEEEEEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccEEEHHHcccccHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEEccccccEEEEEEccccEEccccHHccccccccccccccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccc
cccccccccccccccccHHEccccccccccccccccccccccccccccccccccHcccccccccccEcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccHHHHHHHHHHccccEEHEHHHHccccHEEEEEEcccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEEEEEccccccEEEEEEEccccccHHHHHHHHccccccccccccccEEEEHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHcccccccccEEEEEEEccccccccc
mffsqgrsdgnhsnngehiIKFGSIIEYcnacttqpgfssshahhqpsaagsplpqsrpdyqtrtrildprcDFVQKLNRVLLLARGIALAVDPLFFYVFSLyvapgrggapcvYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQqcenskscdfpvscskvyhksefPLALMVgksscldddgpyrygiyaaalpvissnstadtilYPIFWGLlnlssfgneleptsNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCldlvkkvplfhclddlvlDNICDRVKALIyskdekiiregnpVSRMVFLVRGrikrsqslskgklatsvlgpggflgdeLLSWClrrpfkdrlpaspatftCMESVEayglnasdlRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGTAENVSHVMGNEIEGIERRLRRYAAMFMSirphdhle
mffsqgrsdgnhsnnGEHIIKFGSIIEYCNACTTQPGFSSSHAHHQPSaagsplpqsrPDYQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKiqlrsrdmewwmrrrqltsglkwrvrHFERQrwatmgedeldwiedLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALiyskdekiiregnpvsrMVFLVRGrikrsqslskgklatsvlgpggFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITryyssnwrtwaAVNIQFAWRRYRIRIRggtaenvshvmgneiEGIERRLRRYAAMFMSIRPHDHLE
MFFSQGRSDGNHSNNGEHIIKFGSIIEYCNACTTQPGFssshahhqpsaagsPLPQSRPDYQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGTAENVSHVMGNEIEGIERRLRRYAAMFMSIRPHDHLE
*****************HIIKFGSIIEYCNACTT******************************TRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGTAENVSHVMGNEIEGIERRLRRYAAMFMS********
****************************************************************TRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRR********SPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAW***********************************************
***********HSNNGEHIIKFGSIIEYCNACTTQP**********************PDYQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGTAENVSHVMGNEIEGIERRLRRYAAMFMSIRPHDHLE
****************E**IKFGSIIEYCNACTTQPGFS**********************QTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGT**************IERRLRRYAAMFMSIRP*****
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MFFSQGRSDGNHSNNGEHIIKFGSIIEYCNACTTQPGFSSSHAHHQPSAAGSPLPQSRPDYQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGTAENVSHVMGNEIEGIERRLRRYAAMFMSIRPHDHLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query667 2.2.26 [Sep-21-2011]
O65718726 Cyclic nucleotide-gated i yes no 0.952 0.874 0.642 0.0
Q94AS9694 Cyclic nucleotide-gated i no no 0.881 0.847 0.454 1e-154
Q9SJA4726 Probable cyclic nucleotid no no 0.826 0.758 0.381 1e-109
Q8L7Z0720 Probable cyclic nucleotid no no 0.839 0.777 0.369 1e-104
Q9LEQ3706 Putative cyclic nucleotid no no 0.824 0.779 0.367 1e-104
O65717716 Cyclic nucleotide-gated i no no 0.811 0.755 0.350 1e-103
Q9LNJ0711 Probable cyclic nucleotid no no 0.827 0.776 0.359 1e-102
Q9SU64705 Probable cyclic nucleotid no no 0.862 0.815 0.366 1e-102
Q9SL29678 Putative cyclic nucleotid no no 0.829 0.815 0.362 1e-102
O82226747 Probable cyclic nucleotid no no 0.821 0.733 0.357 1e-100
>sp|O65718|CNGC2_ARATH Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/676 (64%), Positives = 509/676 (75%), Gaps = 41/676 (6%)

Query: 29  CNACTTQ--PGFSSS-----HAHHQPSAAGS---PLPQSRPDYQTRTR----------IL 68
           C ACT    P F S+     HA    ++AGS   P+ +       RTR          +L
Sbjct: 55  CYACTQVGVPAFHSTSCDQAHAPEWRASAGSSLVPIQEGSVPNPARTRFRRLKGPFGEVL 114

Query: 69  DPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAP-CVYMDAELALIVTVI 127
           DPR   VQ+ NR LLLARG+ALAVDPLFFY  S+    GR   P C+YMD   A +VTV+
Sbjct: 115 DPRSKRVQRWNRALLLARGMALAVDPLFFYALSI----GRTTGPACLYMDGAFAAVVTVL 170

Query: 128 RTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILP 187
           RTC+D VHLWH+WLQFRLAYVSRESLVVGCGKLVWD RAIA HY  S T FW DV VILP
Sbjct: 171 RTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYARSLTGFWFDVIVILP 230

Query: 188 IPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVW 247
           +PQAV WLVVPKLI+E+++KLIMTIL+L+ LFQFLPK+YH +CLMRRM+KVTGYIFGT+W
Sbjct: 231 VPQAVFWLVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIW 290

Query: 248 WGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSC-SKVYHKSEFP 306
           WGF +NLIAY I SHVAGGCWY LA QR+ SC++QQC  + +C+  ++C  +V ++   P
Sbjct: 291 WGFALNLIAYFIASHVAGGCWYVLAIQRVASCIRQQCMRTGNCNLSLACKEEVCYQFVSP 350

Query: 307 ------------LALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLN 354
                       L  +V K  CLD +GP+RYGIY  ALPVISSNS A  ILYPIFWGL+ 
Sbjct: 351 TSTVGYPCLSGNLTSVVNKPMCLDSNGPFRYGIYRWALPVISSNSLAVKILYPIFWGLMT 410

Query: 355 LSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDME 414
           LS+F N+LEPTSN LEV+FSI +VL GL LFTLL+GNIQV L  VMA+++K+Q+R RDME
Sbjct: 411 LSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDME 470

Query: 415 WWMRRRQLTSGLKWRVRHFERQRWATM-GEDELDWIEDLPQGLRRDIKRYLCLDLVKKVP 473
           WWM+RRQL S L+ RVR FERQRW  + GEDEL+ I DLP GLRRDIKRYLC DL+ KVP
Sbjct: 471 WWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVP 530

Query: 474 LFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATS 533
           LF  +DDL+LDNICDR K  ++SKDEKIIREG+PV RM+F++RGR+KR QSLSKG LATS
Sbjct: 531 LFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATS 590

Query: 534 VLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLA 593
            L PGG+LGDELLSWCLRRPF DRLP S ATF C+E++EA+ L + DLRYI DHFRYK A
Sbjct: 591 TLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFA 650

Query: 594 DERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRG-GTAENVSHVMGNEIEG-IERRLR 651
           +ERLKR  RYYSSNWRTWAAVNIQ AWRR R R RG     ++S V  N IEG  ERRL 
Sbjct: 651 NERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLL 710

Query: 652 RYAAMFMSIRPHDHLE 667
           +YAAMFMSIRPHDHLE
Sbjct: 711 QYAAMFMSIRPHDHLE 726
Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and calcium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Could also transport lithium, cesium and rubium and displays a strong selectivity against sodium. Seems to directly participate in pathogen-induced calcium influx. May function in homeostasis, re-establishing ionic balance after defense action and/or other stimuli. Could mediate the initiation of the developmentally regulated cell death programs.
Arabidopsis thaliana (taxid: 3702)
>sp|Q94AS9|CNGC4_ARATH Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 Back     alignment and function description
>sp|Q9LEQ3|CNG18_ARATH Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=3 SV=1 Back     alignment and function description
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 Back     alignment and function description
>sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1 Back     alignment and function description
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query667
224141041705 predicted protein [Populus trichocarpa] 0.946 0.895 0.656 0.0
356568702714 PREDICTED: cyclic nucleotide-gated ion c 0.980 0.915 0.652 0.0
356526469718 PREDICTED: cyclic nucleotide-gated ion c 0.980 0.910 0.646 0.0
255584317715 Cyclic nucleotide-gated ion channel, put 0.979 0.913 0.646 0.0
169635151712 putative cyclic nucleotide-gated cation 0.979 0.917 0.620 0.0
60459560715 CNGC2 [Gossypium hirsutum] 0.971 0.906 0.634 0.0
357502127710 Cyclic nucleotide-gated ion channel [Med 0.949 0.891 0.677 0.0
312282005722 unnamed protein product [Thellungiella h 0.982 0.907 0.627 0.0
449447404684 PREDICTED: cyclic nucleotide-gated ion c 0.941 0.918 0.643 0.0
225452934701 PREDICTED: cyclic nucleotide-gated ion c 0.973 0.925 0.639 0.0
>gi|224141041|ref|XP_002323883.1| predicted protein [Populus trichocarpa] gi|222866885|gb|EEF04016.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/673 (65%), Positives = 519/673 (77%), Gaps = 42/673 (6%)

Query: 29  CNACTTQ--PGFSSSHAH--HQP---SAAGSPL--------PQSRPDY-QTRT------R 66
           C ACT    P F S+     HQP   + AGS L        P S+P   QT         
Sbjct: 41  CYACTQVGVPVFHSTSCDSVHQPEWQALAGSSLVPIHAKSDPISKPARCQTPNTKGPFGS 100

Query: 67  ILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTV 126
           ILDPR  +V+K NRVLLL RGIALA+DPLFFY  SL +  G+GGAPC+Y++   A IVTV
Sbjct: 101 ILDPRSKWVKKWNRVLLLTRGIALAIDPLFFYALSLSI--GKGGAPCLYVNIGFAAIVTV 158

Query: 127 IRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVIL 186
            R+CVD VHLWHLWLQFRLAYVSRESLV GCGKLVW+ARAIA HYV S   FW DVFVIL
Sbjct: 159 ARSCVDAVHLWHLWLQFRLAYVSRESLVFGCGKLVWNARAIAYHYVRSLKGFWFDVFVIL 218

Query: 187 PIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTV 246
           PIPQA+ WL+VPKLI+E+++K ++T+L++   FQFLPKVYHS CL RRMRKVTGYIFGT+
Sbjct: 219 PIPQAIFWLLVPKLIREEKIKQVLTMLLVTFSFQFLPKVYHSFCLARRMRKVTGYIFGTI 278

Query: 247 WWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCS-KVYHKSEF 305
           WWGF +NL+AYLI SHV GGCWY LAT+R+ +CL++QCE + +CD  + CS  V ++  +
Sbjct: 279 WWGFGLNLVAYLIASHVTGGCWYVLATERVATCLKKQCERNGNCDLTLQCSMNVCYQFMY 338

Query: 306 PL----------ALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNL 355
           P           +  + K  CLDD+GP+ YGIY+ AL V+SSNS A  ILYPIFWGLLNL
Sbjct: 339 PADNYGNPCGRNSTWIAKPLCLDDNGPFNYGIYSPALLVVSSNSLAVKILYPIFWGLLNL 398

Query: 356 SSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEW 415
           SSFGNEL PTSN++EVMFSI IVLCG TLFTLL+GNIQV L VVMA+ KK+QLR +D+EW
Sbjct: 399 SSFGNELAPTSNLVEVMFSIYIVLCGFTLFTLLIGNIQVFLHVVMAKNKKMQLRRQDVEW 458

Query: 416 WMRRRQLTSGLKWRVRHFERQRWATMG-EDELDWIEDLPQGLRRDIKRYLCLDLVKKVPL 474
           WMRRRQL +GL+ R RHFERQ+W  MG EDE+ WIE+LP+GLRRDIKRYLCLDL+KKVPL
Sbjct: 459 WMRRRQLPTGLRQRFRHFERQKWRVMGGEDEMSWIEELPEGLRRDIKRYLCLDLIKKVPL 518

Query: 475 FHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSV 534
           FH LDDL+LDNICDRVK L+YSKDEKI+REG+PV RMVF+V GR+K SQ LSKG +ATSV
Sbjct: 519 FHNLDDLILDNICDRVKLLVYSKDEKILREGDPVLRMVFIVHGRVKYSQCLSKGMVATSV 578

Query: 535 LGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLAD 594
           L PGGFLGDELLSWCLRRPF DRLPAS ATF CME  EA+ L+A DLRYI++HFRY+ A 
Sbjct: 579 LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMEPTEAFVLDAYDLRYISEHFRYRFAS 638

Query: 595 ERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRGGTAENVSHVMGNEIEGIERRLRRYA 654
           +RLKR  RYYSSNWRTWAAVNIQFAWRRYRIR RG    ++ +V       +E RLR  A
Sbjct: 639 KRLKRTMRYYSSNWRTWAAVNIQFAWRRYRIRKRGLATPDMVNV------SMENRLRLCA 692

Query: 655 AMFMSIRPHDHLE 667
           AMFMS+RPHDH +
Sbjct: 693 AMFMSLRPHDHFQ 705

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356568702|ref|XP_003552549.1| PREDICTED: cyclic nucleotide-gated ion channel 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356526469|ref|XP_003531840.1| PREDICTED: cyclic nucleotide-gated ion channel 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255584317|ref|XP_002532894.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223527328|gb|EEF29474.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|169635151|gb|ACA58352.1| putative cyclic nucleotide-gated cation channel [Sandersonia aurantiaca] Back     alignment and taxonomy information
>gi|60459560|gb|AAX18166.2| CNGC2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|357502127|ref|XP_003621352.1| Cyclic nucleotide-gated ion channel [Medicago truncatula] gi|355496367|gb|AES77570.1| Cyclic nucleotide-gated ion channel [Medicago truncatula] Back     alignment and taxonomy information
>gi|312282005|dbj|BAJ33868.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|449447404|ref|XP_004141458.1| PREDICTED: cyclic nucleotide-gated ion channel 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225452934|ref|XP_002284164.1| PREDICTED: cyclic nucleotide-gated ion channel 2 [Vitis vinifera] gi|296082976|emb|CBI22277.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query667
TAIR|locus:2180867726 DND1 "AT5G15410" [Arabidopsis 0.895 0.822 0.676 8e-227
TAIR|locus:2162605694 CNGC4 "AT5G54250" [Arabidopsis 0.881 0.847 0.458 8.1e-147
TAIR|locus:2046703726 CNGC14 "cyclic nucleotide-gate 0.829 0.761 0.386 8.6e-104
TAIR|locus:2118816720 CNGC17 "cyclic nucleotide-gate 0.854 0.791 0.369 4.9e-101
TAIR|locus:2062814678 CNGC15 "cyclic nucleotide-gate 0.826 0.812 0.366 6.4e-99
TAIR|locus:2185510706 CNGC18 "AT5G14870" [Arabidopsi 0.829 0.783 0.376 2e-97
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.817 0.761 0.356 9.7e-96
TAIR|locus:2097860705 CNGC16 "cyclic nucleotide-gate 0.830 0.785 0.376 2e-95
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.818 0.744 0.364 6.8e-95
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.832 0.752 0.357 1.1e-94
TAIR|locus:2180867 DND1 "AT5G15410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2189 (775.6 bits), Expect = 8.0e-227, P = 8.0e-227
 Identities = 418/618 (67%), Positives = 488/618 (78%)

Query:    67 ILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAP-CVYMDAELALIVT 125
             +LDPR   VQ+ NR LLLARG+ALAVDPLFFY  S+    GR   P C+YMD   A +VT
Sbjct:   113 VLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSI----GRTTGPACLYMDGAFAAVVT 168

Query:   126 VIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVI 185
             V+RTC+D VHLWH+WLQFRLAYVSRESLVVGCGKLVWD RAIA HY  S T FW DV VI
Sbjct:   169 VLRTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYARSLTGFWFDVIVI 228

Query:   186 LPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGT 245
             LP+PQAV WLVVPKLI+E+++KLIMTIL+L+ LFQFLPK+YH +CLMRRM+KVTGYIFGT
Sbjct:   229 LPVPQAVFWLVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGT 288

Query:   246 VWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSK-VYHKSE 304
             +WWGF +NLIAY I SHVAGGCWY LA QR+ SC++QQC  + +C+  ++C + V ++  
Sbjct:   289 IWWGFALNLIAYFIASHVAGGCWYVLAIQRVASCIRQQCMRTGNCNLSLACKEEVCYQFV 348

Query:   305 FP------------LALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGL 352
              P            L  +V K  CLD +GP+RYGIY  ALPVISSNS A  ILYPIFWGL
Sbjct:   349 SPTSTVGYPCLSGNLTSVVNKPMCLDSNGPFRYGIYRWALPVISSNSLAVKILYPIFWGL 408

Query:   353 LNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRD 412
             + LS+F N+LEPTSN LEV+FSI +VL GL LFTLL+GNIQV L  VMA+++K+Q+R RD
Sbjct:   409 MTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRD 468

Query:   413 MEWWMRRRQLTSGLKWRVRHFERQRWATMG-EDELDWIEDLPQGLRRDIKRYLCLDLVKK 471
             MEWWM+RRQL S L+ RVR FERQRW  +G EDEL+ I DLP GLRRDIKRYLC DL+ K
Sbjct:   469 MEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINK 528

Query:   472 VPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA 531
             VPLF  +DDL+LDNICDR K  ++SKDEKIIREG+PV RM+F++RGR+KR QSLSKG LA
Sbjct:   529 VPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLA 588

Query:   532 TSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYK 591
             TS L PGG+LGDELLSWCLRRPF DRLP S ATF C+E++EA+ L + DLRYI DHFRYK
Sbjct:   589 TSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYK 648

Query:   592 LADERLKRITRYYSSNWRTWAAVNIQFAWRRYRIRIRG-GTAENVSHVMGNEIEG-IERR 649
              A+ERLKR  RYYSSNWRTWAAVNIQ AWRR R R RG     ++S V  N IEG  ERR
Sbjct:   649 FANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERR 708

Query:   650 LRRYAAMFMSIRPHDHLE 667
             L +YAAMFMSIRPHDHLE
Sbjct:   709 LLQYAAMFMSIRPHDHLE 726
GO:0005261 "cation channel activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0005242 "inward rectifier potassium channel activity" evidence=IGI
GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IMP
GO:0006952 "defense response" evidence=TAS
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0005516 "calmodulin binding" evidence=TAS
GO:0005222 "intracellular cAMP activated cation channel activity" evidence=IDA
GO:0005262 "calcium channel activity" evidence=IMP
GO:0007263 "nitric oxide mediated signal transduction" evidence=IMP
TAIR|locus:2162605 CNGC4 "AT5G54250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185510 CNGC18 "AT5G14870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097860 CNGC16 "cyclic nucleotide-gated channel 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65718CNGC2_ARATHNo assigned EC number0.64200.95200.8746yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query667
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 2e-11
COG0664214 COG0664, Crp, cAMP-binding proteins - catabolite g 3e-08
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 2e-07
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 5e-05
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 0.002
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 474 LFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLAT- 532
           LF  LDD  L+ + D ++   +   E IIR+G+P   +  ++ G ++  +    G+    
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 533 SVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYI 584
             LGPG   G+  L     R          AT   +   E   L  SD R +
Sbjct: 61  GFLGPGDLFGELALLGNGPR---------SATVRALTDSELLVLPRSDFRRL 103

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 667
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 100.0
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.54
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.46
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.44
cd00038115 CAP_ED effector domain of the CAP family of transc 99.42
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.37
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.37
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.36
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.34
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.32
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.3
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.24
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.22
COG2905 610 Predicted signal-transduction protein containing c 99.21
PLN02868 413 acyl-CoA thioesterase family protein 99.19
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.19
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.17
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.15
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 99.11
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.0
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.85
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.83
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 98.8
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.37
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.13
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.99
PRK10537393 voltage-gated potassium channel; Provisional 97.92
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 97.68
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.52
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.46
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 96.72
PF04831153 Popeye: Popeye protein conserved region; InterPro: 96.68
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 96.64
PRK11832207 putative DNA-binding transcriptional regulator; Pr 96.61
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 96.3
PLN032231634 Polycystin cation channel protein; Provisional 95.94
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 95.9
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.77
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 95.43
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 93.39
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 91.55
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 89.22
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 89.22
COG4709195 Predicted membrane protein [Function unknown] 83.94
KOG3676782 consensus Ca2+-permeable cation channel OSM-9 and 82.85
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-100  Score=851.15  Aligned_cols=507  Identities=41%  Similarity=0.726  Sum_probs=459.6

Q ss_pred             CCCCCceeCCCChhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHH
Q 005964           61 YQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLW  140 (667)
Q Consensus        61 ~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~  140 (667)
                      .+...+|++|+|+|+..||.+++++++|+++++|++||++..    ++ +..|  .|+.+...+++++.++|++|++||+
T Consensus        63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~----~~-~~~~--~d~~~~~~l~v~d~ivD~fflvdIv  135 (727)
T KOG0498|consen   63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLI----DD-ERKC--IDGKLAAPLTVLDTIVDIFFLVDIV  135 (727)
T ss_pred             ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEec----cc-cccc--ccccccCceeeHHHHHHHHHHHHHH
Confidence            344566999999999999999999999999999998888765    44 3667  7888889999999999999999999


Q ss_pred             HHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhHHHHHHHHHHHHHHh
Q 005964          141 LQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQ  220 (667)
Q Consensus       141 l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l~~  220 (667)
                      +||||||++++|     -++|.||++||+||+|+  ||++|++|++|+++++.|.++    +........+.+..+.+++
T Consensus       136 L~Frtayv~~~s-----~elV~dpk~IA~rYl~t--wFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~  204 (727)
T KOG0498|consen  136 LNFRTAYVDPSS-----YELVDDPKKIAKRYLKT--WFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQ  204 (727)
T ss_pred             HhheEEEECCCC-----ceeeeCHHHHHHHHHhh--hHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHH
Confidence            999999999986     47999999999999999  999999999999999988765    1111222233455556778


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCccccccCC
Q 005964          221 FLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVY  300 (667)
Q Consensus       221 ~Llkl~r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~~~  300 (667)
                      ||+|++|+++++.++++..++..+++|++++++|+++++++||+||+||++|.++..+||.++                 
T Consensus       205 rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-----------------  267 (727)
T KOG0498|consen  205 RLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-----------------  267 (727)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-----------------
Confidence            999999999999999999999999999998899999999999999999999999887777643                 


Q ss_pred             CCCCCccccccccc----cCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHH
Q 005964          301 HKSEFPLALMVGKS----SCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSIC  376 (667)
Q Consensus       301 ~~~~w~~~sw~~~~----~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~  376 (667)
                              +|+...    .|.  ++.|+||+|.          ++.+|++|+||+++||||+|||+++++|..|++|+|+
T Consensus       268 --------tw~~~l~~~~~~~--~~~~~fg~~s----------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~  327 (727)
T KOG0498|consen  268 --------TWLGSLGRLLSCY--NLSFTFGIYS----------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIF  327 (727)
T ss_pred             --------ccccccccccccC--cccccccchh----------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHH
Confidence                    233211    122  1225677764          4569999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-CCCHHHHHhhCChh
Q 005964          377 IVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM-GEDELDWIEDLPQG  455 (667)
Q Consensus       377 i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~-~~de~~il~~Lp~~  455 (667)
                      +|++|+++||++||||++++|+++++.++|+.+++++++||++++||+.||+||++|++|+|..+ |+||++++++||++
T Consensus       328 ~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~  407 (727)
T KOG0498|consen  328 IMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKD  407 (727)
T ss_pred             HHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEc
Q 005964          456 LRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVL  535 (667)
Q Consensus       456 Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l  535 (667)
                      ||++|++|+|.++++++|+|+++|++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...+.+|..+...+
T Consensus       408 LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L  487 (727)
T KOG0498|consen  408 LRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAIL  487 (727)
T ss_pred             HHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999988765666678999


Q ss_pred             CCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 005964          536 GPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVN  615 (667)
Q Consensus       536 ~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ys~~~~~~~~~~  615 (667)
                      ++||+|||..++||++      .| ++.||+|+|.|+++.|+++||.+++++|| .++.+++++++++|+++|++|++++
T Consensus       488 ~~Gd~~GeEl~~~~~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~~  559 (727)
T KOG0498|consen  488 GPGDFFGEELLTWCLD------LP-QTRTVRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAACF  559 (727)
T ss_pred             cCCCccchHHHHHHhc------CC-CCceeehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhhh
Confidence            9999999888888863      56 58999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 005964          616 IQFAWRRYRIRIRGG  630 (667)
Q Consensus       616 ~q~~~~~~~~r~~~~  630 (667)
                      +|.+|+++.+|+...
T Consensus       560 iq~a~r~~~~~~~~~  574 (727)
T KOG0498|consen  560 IQAAWRRHIKRKGEE  574 (727)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999999777

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query667
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 2e-21
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 1e-08
3otf_A220 Structural Basis For The Camp-Dependent Gating In H 2e-07
4hbn_A205 Crystal Structure Of The Human Hcn4 Channel C-termi 2e-07
3u10_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-06
1q3e_A207 Hcn2j 443-645 In The Presence Of Cgmp Length = 207 2e-06
3u11_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-06
3ffq_A202 Hcn2i 443-640 Apo-State Length = 202 3e-06
2q0a_A200 Structure And Rearrangements In The Carboxy-Termina 4e-06
3u0z_A210 Tetramerization Dynamics Of The C-Terminus Underlie 5e-06
3bpz_A202 Hcn2-I 443-460 E502k In The Presence Of Camp Length 6e-06
3ukn_A212 Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN 9e-06
3etq_A204 X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 2e-04
3beh_A355 Structure Of A Bacterial Cyclic Nucleotide Regulate 2e-04
1q43_A207 Hcn2i 443-640 In The Presence Of Camp, Selenomethio 7e-04
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 469 VKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKR--SQSLS 526
           V++VPLF  +D+ +LD IC+R+K  ++++   ++REG+PV+ M+F++RGR++   +    
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 527 KGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIAD 586
            G    S+L  G F GDELL+W L       LP+S  T   +  VEA+ L A +L+++A 
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 587 HFR 589
            FR
Sbjct: 128 QFR 130
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 Back     alignment and structure
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 Back     alignment and structure
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 Back     alignment and structure
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 Back     alignment and structure
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 Back     alignment and structure
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 Back     alignment and structure
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 Back     alignment and structure
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 Back     alignment and structure
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 Back     alignment and structure
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query667
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 7e-52
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 2e-45
3ukn_A212 Novel protein similar to vertebrate potassium VOL 9e-45
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 1e-34
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 3e-30
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 1e-13
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 2e-13
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 9e-13
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 5e-12
2pqq_A149 Putative transcriptional regulator; APC7345, strep 8e-12
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 9e-12
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 1e-11
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 5e-11
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 7e-11
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 8e-11
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 2e-10
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 4e-10
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 5e-10
4din_B381 CAMP-dependent protein kinase type I-beta regulat 5e-10
4din_B381 CAMP-dependent protein kinase type I-beta regulat 1e-07
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 8e-10
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 9e-10
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 3e-09
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 1e-09
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 1e-09
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-09
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 9e-09
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 2e-09
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 7e-09
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 2e-09
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 3e-09
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 9e-08
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 3e-09
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 5e-09
1ft9_A222 Carbon monoxide oxidation system transcription reg 5e-09
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 1e-08
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 1e-08
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 2e-08
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 2e-07
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 6e-07
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 2e-06
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 5e-06
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 8e-06
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 1e-05
3b02_A195 Transcriptional regulator, CRP family; structural 1e-04
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 2e-04
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
 Score =  177 bits (450), Expect = 7e-52
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 18/206 (8%)

Query: 401 ARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDI 460
           +  ++ + + + +E +M+ R+L S L+ ++  +   R+     DE     ++ + +R+D+
Sbjct: 5   SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDV 64

Query: 461 KRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIK 520
             Y C DLV  VP F   D   +  +   ++  ++   + +I+EG    RM F+ +G + 
Sbjct: 65  ANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIV- 123

Query: 521 RSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASD 580
               +    +  + L  G + G+  L    RR          A+  C      + L+   
Sbjct: 124 --DIIMSDGVIATSLSDGSYFGEICLLTRERR---------VASVKCETYCTLFSLSVQH 172

Query: 581 LRYIADHFR------YKLADERLKRI 600
              + D F        ++A  RL RI
Sbjct: 173 FNQVLDEFPAMRKTMEEIAVRRLTRI 198
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194 Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query667
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.98
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.97
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.97
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.97
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.84
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.79
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.77
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.73
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.71
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.71
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.7
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.7
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.67
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.66
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.66
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.64
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.64
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.64
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.63
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.62
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.62
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.61
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.6
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.6
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.59
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.59
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.57
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.57
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.57
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.56
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.55
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.52
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.52
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.52
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.51
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.5
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.5
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.49
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.48
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.47
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.47
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.47
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.47
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.46
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.46
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.44
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.43
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.43
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.41
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.41
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.39
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.38
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.37
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.32
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.26
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.26
3b02_A195 Transcriptional regulator, CRP family; structural 99.18
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.18
2q67_A114 Potassium channel protein; inverted teepee, helix 99.1
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.08
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.06
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.03
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.03
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.93
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.85
1xl4_A301 Inward rectifier potassium channel; integral membr 98.67
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.59
3um7_A309 Potassium channel subfamily K member 4; potassium 98.58
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.5
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.36
3sya_A340 G protein-activated inward rectifier potassium CH; 98.36
3um7_A309 Potassium channel subfamily K member 4; potassium 98.24
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.2
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.12
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.07
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.99
1lnq_A336 MTHK channels, potassium channel related protein; 97.9
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 96.64
1ors_C132 Potassium channel; voltage-dependent, voltage sens 96.14
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=99.98  E-value=6.4e-33  Score=297.26  Aligned_cols=340  Identities=19%  Similarity=0.254  Sum_probs=128.2

Q ss_pred             eCCCChhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHHHHhceeE
Q 005964           68 LDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAY  147 (667)
Q Consensus        68 i~P~s~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~l~f~t~y  147 (667)
                      +.|+|+..   +.+++++++.++++.-+.    ..   |+-        .......+..++.++-++|.+|+++++..+ 
T Consensus         3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~----t~---~~~--------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~-   63 (355)
T 3beh_A            3 VLPFLRIY---APLNAVLAAPGLLAVAAL----TI---PDM--------SGRSRLALAALLAVIWGAYLLQLAATLLKR-   63 (355)
T ss_dssp             ----CCSS---SSHHHHHHHHHHHHHHHH----TS---SSC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCchhHHH---HHHHHHHHHHHHHHHHHH----cc---cch--------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc-
Confidence            46777754   555555556666555431    11   110        011122344555566667899999987422 


Q ss_pred             EcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhh-cchhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhHHHH
Q 005964          148 VSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVI-LPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVY  226 (667)
Q Consensus       148 ~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~-lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~Llkl~  226 (667)
                        +       .         ...|.++ +|.++|++++ +|+..++.    +..    +.   .+++|++    |++|+.
T Consensus        64 --~-------~---------~~~~~~~-~~~i~Dl~~i~~p~~~~~~----~~~----~~---~r~lr~~----R~lrl~  109 (355)
T 3beh_A           64 --R-------A---------GVVRDRT-PKIAIDVLAVLVPLAAFLL----DGS----PD---WSLYCAV----WLLKPL  109 (355)
T ss_dssp             --C-------S---------CSSCCCH-HHHHHHHHHHHHHHHHHHS----CCS----GG---GGGGGGG----GGSHHH
T ss_pred             --c-------c---------cceeccC-cchHHHHHHHHHHHHHHHh----ccc----hh---HHHHHHH----HHHHHH
Confidence              1       1         1246666 3999999999 69765321    110    11   1111111    222332


Q ss_pred             HHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCccccccCCCCCCCc
Q 005964          227 HSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFP  306 (667)
Q Consensus       227 r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~~~~~~~w~  306 (667)
                      |..+..+.+.+.   +.. ...++...+++++++.|+.||++|.+...                               .
T Consensus       110 r~~~~~~~l~~~---l~~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~~-------------------------------~  154 (355)
T 3beh_A          110 RDSTFFPVLGRV---LAN-EARNLIGVTTLFGVVLFAVALAAYVIERD-------------------------------I  154 (355)
T ss_dssp             HTCSSHHHHHHH---HHH-THHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------------------------T
T ss_pred             HHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------------------C
Confidence            222222222221   111 12234555666678899999999987421                               0


Q ss_pred             cccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHH
Q 005964          307 LALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFT  386 (667)
Q Consensus       307 ~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa  386 (667)
                      +                              ++.+..|..|+||+++||||+||||+.|.+..|+++++++|++|+++++
T Consensus       155 ~------------------------------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~  204 (355)
T 3beh_A          155 Q------------------------------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFG  204 (355)
T ss_dssp             C------------------------------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             C------------------------------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence            0                              1123468899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHH
Q 005964          387 LLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCL  466 (667)
Q Consensus       387 ~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~~i~~~l~~  466 (667)
                      +.+|.+++.+.....+                            +++.+                             ..
T Consensus       205 ~~~~~i~~~~~~~~~~----------------------------~~~~~-----------------------------~~  227 (355)
T 3beh_A          205 LWAGILATGFYQEVRR----------------------------GDFVR-----------------------------NW  227 (355)
T ss_dssp             HHHHHHHHHHHHHHHH----------------------------HHHHH-----------------------------HH
T ss_pred             HHHHHHHHHHHHHHHH----------------------------Hhhcc-----------------------------cc
Confidence            9999998876432110                            00000                             23


Q ss_pred             HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccch
Q 005964          467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELL  546 (667)
Q Consensus       467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~L  546 (667)
                      +.++++|+|++++++++++++..++.+.++|||.|+++||+++++|||.+|.++++..+    +  ..+.+|++|||.++
T Consensus       228 ~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~----~--~~l~~G~~fGe~~~  301 (355)
T 3beh_A          228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P--VELGPGAFFGEMAL  301 (355)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC----e--eEECCCCEEeehHH
Confidence            56788899999999999999999999999999999999999999999999999998642    2  47899999999844


Q ss_pred             hhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHH
Q 005964          547 SWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLK  598 (667)
Q Consensus       547 l~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~  598 (667)
                              +.+.| +.++++|.++|+++.+++++|+++++++| .+.....+
T Consensus       302 --------l~~~~-~~~~~~A~~~~~l~~i~~~~f~~ll~~~p-~~~~~l~~  343 (355)
T 3beh_A          302 --------ISGEP-RSATVSAATTVSLLSLHSADFQMLCSSSP-EIAEIFRK  343 (355)
T ss_dssp             ----------------------------------------------------
T ss_pred             --------hCCCC-cceEEEECccEEEEEEeHHHHHHHHHHCH-HHHHHHHH
Confidence                    57778 79999999999999999999999999999 55554433
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 667
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 4e-16
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 3e-14
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 1e-09
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 6e-08
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 5e-07
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 1e-06
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 2e-06
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 3e-06
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 0.001
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 73.4 bits (179), Expect = 4e-16
 Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLS 526
             V++VPLF  +D+ +LD IC+R+K  ++++   ++REG+PV+ M+F++RGR++   +  
Sbjct: 6   SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65

Query: 527 KGKLATSVLG--PGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYI 584
                 +      G F GDELL+W L       LP+S  T   +  VEA+ L A +L+++
Sbjct: 66  GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125

Query: 585 ADHFR 589
           A  FR
Sbjct: 126 ASQFR 130
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query667
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.96
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.78
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.74
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.71
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.71
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.67
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.66
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.66
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.66
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.65
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.62
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.61
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.6
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.59
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.57
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.53
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.38
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.29
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.1
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.94
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.59
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 96.86
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 96.7
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 94.94
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 81.24
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.2e-29  Score=241.23  Aligned_cols=181  Identities=20%  Similarity=0.356  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q 005964          400 MARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLD  479 (667)
Q Consensus       400 ~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls  479 (667)
                      ++++.+|+++++.+++||+.+++|++|+.||++|++|.|+..+.+++++++.||+.|+.++..+++.++++++|+|++++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~   80 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD   80 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence            36789999999999999999999999999999999999987788999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCC
Q 005964          480 DLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLP  559 (667)
Q Consensus       480 ~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p  559 (667)
                      +.++..|+..+++..|.||++|+++||+++.+|||.+|.|+++.  .++.  ...+.+|++||+.++        +.+.|
T Consensus        81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~--~~~~--~~~l~~G~~fGe~~~--------~~~~~  148 (193)
T d1q3ea_          81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNK--EMKLSDGSYFGEICL--------LTRGR  148 (193)
T ss_dssp             HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC---CCC--EEEECTTCEECHHHH--------HHCSB
T ss_pred             HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec--CCcc--eeeeccceeeeeeec--------cCCCc
Confidence            99999999999999999999999999999999999999999875  2333  356899999999866        46777


Q ss_pred             CcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHH
Q 005964          560 ASPATFTCMESVEAYGLNASDLRYIADHFRYKLAD  594 (667)
Q Consensus       560 ~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~  594 (667)
                       ++++++|.++|+++.|++++|.+++++|| .+..
T Consensus       149 -~~~~~~a~~~~~l~~l~~~~f~~ll~~~p-~~~~  181 (193)
T d1q3ea_         149 -RTASVRADTYCRLYSLSVDNFNEVLEEYP-MMRR  181 (193)
T ss_dssp             -CSSEEEESSCEEEEEEEHHHHHHHHHHSG-GGHH
T ss_pred             -ccccceecCceEEEEEeHHHHHHHHHHCH-HHHH
Confidence             89999999999999999999999999999 4443
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure